Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F50 I2 R1
|
14 |
50.4 |
1586623 |
98.1% |
1556477 |
150.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| MC JC |
NC_000913 |
2,911,491 |
Δ7,528 bp |
|
[relA]–[gudD] |
[relA], rlmD, barA, [gudD] |
|
| | | | seq id |
start |
end |
size |
←reads |
reads→ |
gene |
description |
|---|
| * |
* |
÷ |
NC_000913 |
2911491 |
2919018 |
7528 |
38 [0] |
[1] 39 |
[relA]–[gudD] |
[relA], rlmD, barA, [gudD] |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
NC_000913 |
= 2911490 | 0 (0.000) | 35 (0.740) |
31/280 |
0.9 |
100% |
coding (2162/2235 nt) |
relA |
(p)ppGpp synthetase I/GTP pyrophosphokinase |
| ? | NC_000913 |
2919019 = |
0 (0.000) | coding (367/1341 nt) |
gudD |
D‑glucarate dehydratase 1 |
GATK/CNVnator alignment
N/A
