Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F50 I2 R1
|
173 |
150.8 |
4954114 |
96.5% |
4780720 |
150.2 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,845,824 |
T→C |
E448E (GAA→GAG) |
uhpT ← |
hexose phosphate transporter |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,845,824 | 0 | T | C | 92.9%
| 290.7
/ 3.9
| 99 | E448E (GAA→GAG) | uhpT | hexose phosphate transporter |
| Reads supporting (aligned to +/- strand): ref base T (3/4); new base C (77/14); total (81/18) |
| Fisher's exact test for biased strand distribution p-value = 2.02e-02 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.98e-01 |
Only 100 of 102 total aligned reads displayed.
GGGGCTATTTGATGGCGAGAAGTTTGCCTTCACTACGCTGGAAGTCACGGAATAATAAAAAAAGCCCGGCGTCATGCCGGGCAAAAGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTCTC‑GCGGCGGATTTT‑‑GCGTTCTTCCATTACCGCCACTATCGCCATCAGGCAGATACAACCAATCGCGGCGATATCCAGCGCGGCGAAGGTGCCTGCCCAGCCGGTAAGGCCGAATACCGGCGTCCCATCGGCAATCATTCCCAGACCTAACTTGGCAAAGCTGTC > NC_000913/3845676‑3845970
|
ggggGTATTTGATGGCGAGAAGTTTGCCTTCACTACGCTGGAAGTCACGGAATAATAAAAAAAGCCCGGCGTCATGCCGGGCAAAAGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTCTC‑GCGGCGGATTTT‑‑GCGttc < 4:1567297/151‑1 (MQ=255)
gggCTATTTGATGGCGAGAAGTTTGCCTTCACTACGCTGGAAGTCACGGAATAATAAAAAAAGCCCGGCGTCATGCCGGGCAAAAGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTCTC‑GCGGCGGATTTT‑‑GCGctct > 1:1150998/1‑151 (MQ=255)
aggCTATTTGATAGCGAGAAGTTTGCCTTCACTACGCTGGAAGTCACGGAATAATAAAAAAAGCCCGGCGTCATGCCGGGCAAAAGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTCTC‑GCGGCGGATTTT‑‑GCGctct > 4:1859058/2‑151 (MQ=255)
cTATTTGATGGCGAGAAGTTTGCCTTCACTACGCTGGAAGTCACGGAATAATAAAAAAAGCCCGGCGTCATGCCGGGCAAAAGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTCTC‑GCGGCGGATTTT‑‑GCGCTCTTcc > 4:800629/1‑151 (MQ=255)
tATTTGATGGCGAGAAGTTTGCCTTCACTACGCTGGAAGTCACGGAATAATAAAAAAAGCCCGGCGTCATGCCGGGCAAAAGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTCTC‑GCGGCGGATTTT‑‑GCGCTCTTcc > 4:399535/1‑150 (MQ=255)
aTTTGATGGCGAGAAGTTTGCCTTCACTACGCTGGAAGTCACGGAATAATAAAAAAAGCCCGGCGTCATGCCGGGCAAAAGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTCTC‑GCGGCGGATTTT‑‑GCGCTCTTCCAt > 1:1008473/1‑151 (MQ=255)
ttGATGGCGAGAAGTTTGCCTTCACTACGCTGGAAGTCACGGAATAATAAAAAAAGCCCGGCGTCATGCCGGGCAAAAGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTCTC‑GCGGCGGATTTT‑‑GCGCTCTTCCAtt < 4:91374/150‑1 (MQ=255)
ttGATGGCGAGAAGTTTGCCTTCACTACGCTGGAAGTCACGGAATAATAAAAAAAGCCCGGCGTCATGCCGGGCAAAAGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTCTC‑GCGGCGGATTTT‑‑GCGCTCTTCCAtt > 1:156305/1‑150 (MQ=255)
ttGATGGCGAGAAGTTTGCCTTCACTACGCTGGAAGTCACGGAATAATAAAAAAAGCCCGGCGTCATGCCGGGCAAAAGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTCTC‑GCGGCGGATTTT‑‑GCGCTCTTCCAtt > 4:265941/1‑150 (MQ=255)
tGATGGCGAGAAGTTTGCCTTCACTACGCTGGAAGTCACGGAATAATAAAAAAAGCCCGGCGTCATGCCGGGCAAAAGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTCTC‑GCGGCGGATTTT‑‑GCGCTCTTCCATTAc > 1:647781/1‑151 (MQ=255)
gATGGCGAGAAGTTTGCCTTCACTACGTTGGAAGTCACGGAATAATAAAAAAAGCCAGGCGTCATGCCGGGCAAAAGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTCTC‑GCGGCGGATTTT‑‑GCGATCTTCCATTa > 4:1770174/1‑149 (MQ=255)
aTGGCGAGAAGTTTGCCTTCACTACGCTGGAAGTCACGGAATAATAAAAAAAGCCCGGCGTCATGCCGGGCAAAAGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTCTC‑GCGGCGGATTTT‑‑GCGCTCTTCCATTACCg < 2:44622/151‑1 (MQ=255)
gCGAGAAGTTTGCCTTCACTACGCTGGAAGTCACGGAATAATAAAAAAAGCCCGGCGTCATGCCGGGCAAAAGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTCTC‑GCGGCGGATTTT‑‑GCGCTCTTCCATTACCGCCa < 4:1041950/151‑1 (MQ=255)
cGAGAAGTTTGCCTTCACTACGCTGGAAGTCACGGAATAATAAAAAAAGCCCGGCGTCATGCCGGGCAAAAGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTCTC‑GCGGCGGATTTT‑‑GCGCTCTTCCATTACCGc > 1:1437464/1‑148 (MQ=255)
gaAGTTTGCCTTCACTACGCTGGAAGTCACGGAATAATAAAAAAAGCCCGGCGTCATGCCGGGCAAAAGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTCTC‑GCGGCGGATTTT‑‑GCGCTCTTCCATTACCGCCACTAt > 4:338559/1‑151 (MQ=255)
aGTTTGCCTTCACTACGCTGGAAGTCACGGAATAATAAAAAAAGCCCGGCGTCATGCCGGGCAAAAGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTCTC‑GCGGCGGATTTT‑‑GCGCTCTTCCATTACCGCCACTATCg > 2:545447/1‑151 (MQ=255)
tttGCCTTCACTACGCTGGAAGTCACGGAATAATAAAAAAAGCCCGGCGTCATGCCGGGCAAAAGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTCTC‑GCGGCGGATTTT‑‑GCGCTCTTCCATTACCGCCACTATCGcc > 1:467075/1‑151 (MQ=255)
ccTTCCCTGCGCGGAAAGTCACGAAATAAAAAAAAACGCCCGGCGTCATGCCGGAAAAAAGTCCCCATTTATTTTTATGCCACTTTCAACTGCTGATTTTTTTTCCC‑GCGGGGTTTTTG‑‑GCGCTCTTCCATTACCGCCACTATCGCCAt < 1:568712/149‑1 (MQ=255)
cACTACGCTGAAAGTCACGAAATAAAAAAAAAAGCCCGGCGTCAGGCCGGAAAAAAGCCCCCAGTTACTTTTATCCCCCTGTCAACTGTTAATTTTTTTTCCC‑GCGGGGGTTTTT‑‑GCCCTCTCCCATTACCGCCACTATCGCCATCAGGc < 4:54380/150‑1 (MQ=255)
cTACGCGGGAACTAACGAAAAAAAAAAAAAGCCCCGGCGTCATGCCGGGCAAAAGCCCCCAGTTACTTTTATCCCCCTGTCAATTGCTAATTTTTTTTCCC‑GCGGCGTTTTTT‑‑GCCCTTTCCCATTACCGCCACTATCGCCATCAGGCa < 4:895119/149‑1 (MQ=255)
aCGCTGGAAGTCACGGAATAATAAAAAAAGCCCGGCGTCATGCCGGGCAAAAGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTCTC‑GCGGCGGATTTT‑‑GCGCTCTTCCATTACCGCCACTATCGCCATCAGGCAGAt > 4:29555/1‑150 (MQ=255)
cGCTGGAAGTCACGGAATAATAAAAAAAGCCCGGCGTCATGCCGGGCAAAAGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTCTC‑GCGGCGGATTTT‑‑GCGCTCTTCCATTACCGCCACTATCGCCATCAGGCAGATa > 1:1223030/1‑150 (MQ=255)
cGCTGGAAGTCACGGAATAATAAAAAAAGCCCGGCGTCATGCCGGGCAAAAGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTCTC‑GCGGCGGATTTT‑‑GCGCTCTTCCATTACCGCCACTATCGCCATCAGGCAGATAc > 3:103869/1‑151 (MQ=255)
gCTGGAAGTCACGGAATAATAAAAAAAGCCCGGCGTCATGCCGGGCAAAAGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTCTC‑GCGGCGGATTTT‑‑GCGCTCTTCCATTACCGCCACTATCGCCATCAGGCAGATAc > 4:1797001/1‑150 (MQ=255)
tGGAAGTCACGGAATAATAAAAAAAGCCCGGCGTCATGCCGGGCAAAAGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTCTC‑GCGGCGGATTTT‑‑GCGCTCTTCCATTACCGCCACTATCGCCATCAGGCAGATACAAc > 1:333304/1‑151 (MQ=255)
cACGGAATAATAAAAAAAGCCCGGCGTCATGCCGGGCAAAAGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTCTC‑GCGGCGGATTTT‑‑GCGCTCTTCCATTACCGCCACTATCGCCATCAGGCAGATACAACCAATcgc > 1:316100/1‑151 (MQ=255)
cGGAATAATAAAAAAAGCCCGGCGTCATGCCGGGCAAAAGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTCTC‑GCGGCGGATTTT‑‑GCGCTCTTCCATTACCGCCACTATCGCCATCAGGCAGATACAACCAATCgcgg > 1:1493529/1‑151 (MQ=255)
aaaaaaaaaaaaagGCCCGGCGCCAGGCCGGAAAAAAGCCCCCATTTTGTTTTACCCCATTACCACCT‑CTTATTTTTTTTCCCGGGGGCGTTTTTC‑‑CCCTTCTTCCATTTCCGCCACTATCGCCATCAGGCAGATACAACCAATCgcggcg < 1:1812587/144‑1 (MQ=255)
aataatAAAAAAAGCCCGGCGTCATGCCGGGCAAAAGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTCTC‑GCGGCGGATTTT‑‑GCGCTCTTCCATTACCGCCACTATCGCCATCAGGCAGATACAACCAATCgcggcg > 4:294640/1‑150 (MQ=255)
aaaaaaaaaaaaaGCCGGGCGTCATGCGGGGAAAAAGCCCCCAGTTCCTTTTATCCCACTGTCACCTGCTAATTTTTTTTCCG‑GGGGCGTTTTTT‑‑GCGCTCTCCCATTACCGCCACTATCGCCATCAGGCAGATACAACCAATCgcggcg < 1:491818/144‑1 (MQ=255)
taataaAAAAAGCCCGGCGTCATGCCGGGCAAAAGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTCTC‑GCGGCGGATTTT‑‑GCGCTCTTCCATTACCGCCACTATCGCCATCAGGCAGATACAACCAATCGCGGCGat > 1:604869/1‑150 (MQ=255)
taataaAAAAAGCCCGGCGTCATGCCGGGCAAAAGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTCTC‑GCGGCGGATTTT‑‑GCGCTCTTCCATTACCGCCACTATCGCCATCAGGCAGATACAACCAATCGCGGCGat > 1:142069/1‑150 (MQ=255)
aaaaaaaaaaGCCGGGCTTCAGGCGGGGAAAAAGCCACCATTTCCTTTTACCCCACTGTAAACTCTTTATTTTTTTCCCC‑GGGGCGATTTTC‑‑CCCCTTTCCCATTACCGCCACTATCGCCATCAGGCAGATACAACCAATCGCGGCGatat < 4:1712283/148‑1 (MQ=255)
ataaAAAAAGCCCGGCGTCATGCCGGGCAAAAGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTCTC‑GCGGCGGATTTT‑‑TCGCTCTTCCATTACCGCCACTATCGTCATCAGGCAGATACAACCAATCGCGGCGATATc > 4:29207/1‑151 (MQ=255)
aaaaagCCCCGGCGCAAGGCGGGGAAAAGGCCCCCATTTACTTTTATCCCACTGTCAACTGTTGTTTTTTTTTCGC‑GGGGGGTTTTTC‑‑GCGCTCTCCCATTACCGCCACTATCGCCATCAGGCAGATACAACCAATCGCGGCGATATCCAg < 1:940106/151‑1 (MQ=255)
aaaaGCCCGGCGTCATGCCGGGCAAAAGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTCTC‑GCGGCGGATTTT‑‑GCGCTCTTCCATTACCGCCACTATCGCCATCAGGCAGATACAACCAATCGCGGCGATATCCAgcg > 2:184502/1‑151 (MQ=255)
aaaGCCCGGCGTCATGCCGGGCAAAAGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTCTC‑GCGGCGGATTTT‑‑GCGCTCTTCCATTACCGCCACTATCGCCATCAGGCAGATACAACCAATCGCGGCGATATCCAgcgc > 1:1089513/1‑151 (MQ=255)
aaGCCCGGCGTCATGCCGGGCAAAAGTCCCCAGTTACGCTTTTGCCACTGTCCACTGCTGAATTTTTTTCTC‑GCGGCGGATTTT‑‑GAGCTCTTCCATTACCTCCACTATCGCCATCAGGCAGATACAACCAATCGCGGCGATATCCAgc > 1:1544809/1‑148 (MQ=255)
aaGCCCGGCGTCATGCCGGGCAAAAGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTCTC‑GCGGCGGATTTT‑‑GCGCTCTTCCATTACCGCCACTATCGCCATCAGGCAGATACAACCAATCGCGGCGATATCCAGcgcg > 1:1462771/1‑151 (MQ=255)
cccGGCTTCACGCCGGGAAAACTCCCCCTTTTCCTTTTATCCCCCTGTCACCTGCTAATTTTTTTCCCC‑GCGGGGGTTTTT‑‑GCCCTTTTCCATTGCCGCCACTATCGCCATCAGGCAGATACAACCAATCGCGGCGATATCCAGCgcgg < 4:292322/149‑1 (MQ=255)
cccGGCGTCATGCCGGGCAAAAGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTCTC‑GCGGCGGATTTT‑‑GCGCTCTTCCATTGCCGCCACTATCGCCATCAGGCAGATACAACCAATCGCGGCGATATCCAGCgcggcg > 4:273695/1‑151 (MQ=255)
ccGGCGTCATGCCGGGCAAAAGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTCTC‑GCGGCGGATTTT‑‑GCGCTCTTCCATTACCGCCACTATCGCCATCAGGCAGATACAACCAATCGCGGCGATATCCAGCgcggcg > 2:504523/1‑150 (MQ=255)
gCGTCATGCCGGGCAAAAGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTCTC‑GCGGCGGATTTT‑‑GCGCTCTTCCATTACCGCCACTATCGCCATCAGGCAGATACAACCAATCGCGGCGATATCCAGCGCGGCGAAgg > 1:405760/1‑151 (MQ=255)
gTCAGGCCGGAAAAAAGCCCCCAGTTCCTTTTACGCCCCTGTCAACTGCTAATTTTTTTTCCC‑GGGGGGTTTTTT‑‑GCCCTCTTCCATTACCGCCACTATCGCCATCAGGCAGATACAACCAATCGCGGCGATATCCAGCGCGGCGAAg < 1:1196780/148‑1 (MQ=255)
aTGCCGGGCAAAAGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTCTC‑GCGGCGGATTTT‑‑GCGCTCTTCCATTACCGCCACTATCGCCATCAGGCAGATACAACCAATCGCGGCGATATCCAGCGCGGCGAAGGtgcct > 1:902558/1‑151 (MQ=255)
aTGCCGGGCAAAAGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTCTC‑GCGGCGGATTTT‑‑GCGCTCTTCCATTACCGCCACTATCGCCATCAGGCAGATACAACCAATCGCGGCGATATCCAGCGCGGCGAAGGtgcct > 3:422433/1‑151 (MQ=255)
gcgggaaaaaatcccccATTTCCGTTTATCCCACTGTCAACTGCTGATTTTTTTTCCC‑GGGGGGGTTTTT‑‑GCCCTCTTCCATTCCCGCCACTATCGCCATCAGGCAGATACAACCAATCGCGGCGATATCCAGCGCGGCGAAGGtgcctg < 4:710917/135‑1 (MQ=255)
gCCGGGCAAAAGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTCTC‑GCGGCGGATTTT‑‑GCGCTCTTCCATTACCGCCACTATCGCCATCAGGCAGATACAACCAATCGCGGCGATATCCAGCGCGGCGAAGGtgcctgc > 1:1887719/1‑151 (MQ=255)
cGGGCAAAAGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTCTC‑GCGGCGGATTTT‑‑GCGCTCTTCCATTACCGCCACTATCGCCATCAGGCAGATACAACCAATCGCGGCGATATCCAGCGCGGCGAAGGTGCCTGccc > 4:973365/1‑151 (MQ=255)
cGGGCAAAAGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTCTC‑GCGGCGGATTTT‑‑GCGCTCTTCCATTACCGCCACTATCGCCATCAGGCAGATACAACCAATCGCGGCGATATCCAGCGCGGCGAAGGTGCCTGccc > 4:285627/1‑151 (MQ=255)
gCAAAAGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTCTC‑GCGGCGGATTTT‑‑GCGCTCTTCCATTACCGCCACTATCGCCATCAGGCAGATACAACCAATCGCGGCGATATCCAGCGCGGCGAAGGTGCCTGCCCAg > 4:483441/1‑150 (MQ=255)
aaaaGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTCTC‑GCGGCGGATTTT‑‑GCGCTCTTCCATTACCGCCACTATCGCCATCAGGCAGATACAACCAATCGCGGCGATATCCAGCGCGGCGAAGGTGCCTGCCCAGCCg > 1:744569/1‑151 (MQ=255)
aaaaGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTCTC‑GCGGCGGATTTT‑‑GCGCTCTTCCATTACCGCCACTATCGCCATCAGGCAGATACAACCAATCGCGGCGATATCCAGCGCGGCGAAGGTGCCTGCCCAGCCg > 2:313906/1‑151 (MQ=255)
aaaGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTCTC‑GCGGCGGATTTT‑‑GCGCTCTTCCATTACCGCCACTATCGCCATCAGGCAGATACAACCAATCGCGGCGATATCCAGCGCGGCGAAGGTGCCTGCCCAGCCgg > 1:850766/1‑151 (MQ=255)
aGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTCTC‑GCGGCGGATTTT‑‑GCGCTCTTCCATTACCGCCACTATCGCCATCAGGCAGATACAACCAATCGCGGCGATATCCAGCGCGGCGAAGGTGCCTGCCCAGCCGGt > 4:653903/1‑150 (MQ=255)
tCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTCTC‑GCGGCGGATTTT‑‑GCGCTCTTCCATTACCGCCACTATCGCCATCAGGCAGATACAACCAATCGCGGCGATATCCAGCGCGGCGAAGGTGCCTGCCCAGCCGGTa > 1:1456855/1‑149 (MQ=255)
cACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTCTC‑GCGGCGGATTTT‑‑GCGCTCTTCCATTACCGCCACTATCGCCATCAGGCAGATACAACCAATCGCGGCGATATCCAGCGCGGCGAAGGTGCCTGCCCAGCCGGTAAgg > 1:1764289/1‑151 (MQ=255)
cAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTCTC‑GCGGCGGATTTT‑‑GCGCTCTTCCATTACCGCCACTATCGCCATCAGGCAGATACAACCAATCGCGGCGATATCCAGCGCGGCGAAGGTGCCTGCCCAGCCGGTAAGGCCg > 4:1422445/1‑151 (MQ=255)
tACGTTTATGCCACTGTCAACTGCTGAATTTTTTTCTC‑GCGGCGGATTTT‑‑GCGCTCTTCCATTACCGCCACTATCGCCATCAGGCAGATACAACCAATCGCGGCGATATCCAGCGCGGCGAAGGTGCCTGCCCAGCCGGTAAGGCCGAAt > 4:875669/1‑150 (MQ=255)
aCGTTTATGCCACTGTCAACTGCTGAATTTTTTTCTC‑GCGGCGGATTTT‑‑GCGTTCTTCCATTACCGCCACTATCGCCATCAGGCAGATACAACCAATCGCGGCGATATCCAGCGCGGCGAAGGTGCCTGCCCAGCCGGTAAGGCCGAATa > 4:1300171/1‑150 (MQ=255)
aCGTTTATGCCACTGTCAACTGCTGAATTTTTTTCTC‑GCGGCGGATTTT‑‑GCGCTCTTCCATTACCGCCACTATCGCCATCAGGCAGATACAACCAATCGCGGCGATATCCAGCGCGGCGAAGGTGCCTGCCCAGCCGGTAAGGCCGAATAc > 1:958107/1‑151 (MQ=255)
gTTTATGCCACTGTCAACTGCTGAATTTTTTTCTC‑GCGGCGGATTTT‑‑GCGCTCTTCCATTACCGCCACTATCGCCATCAGGCAGATACAACCAATCGCGGCGATATCCAGCGCGGCGAAGGTGCCTGCCCAGCCGGTAAGGCCGAATACCg > 4:395176/1‑151 (MQ=255)
tttATGCCACTGTCAACTGCTGAATTTTTTTCTC‑GCGGCGGATTTT‑‑GCGCTCTTCCATTACCGCCACTATCGCCATCAGGCAGATACAACCAATCGCGGCGATATCCAGCGCGGCGAAGGTGCCTGCCCAGCCGGTAAGGCCGAATACCgg > 4:1720768/1‑151 (MQ=255)
tATGCCACTGTCAACTGCTGAATTTTTTTCTC‑GCGGCGGATTTT‑‑GCGCTCTTCCATTACCGCCACTATCGCCATCAGGCAGATACAACCAATCGCGGCGATATCCAGCGCGGCGAAGGTGCCTGCCCAGCCGGTAAGGCCGAATACCGGc > 4:1304218/1‑150 (MQ=255)
tATGCCACTGTCAACTGCTGAATTTTTTTCTC‑GCGGCGGATTTT‑‑GCGCTCTTCCATTACCGCCACTATCGCCATCAGGCAGATACAACCAATCGCGGCGATATCCAGCGCGGCGAAGGTGCCTGCCCAGCCGGTAAGGCCGAATACCGGCg > 4:1863011/1‑151 (MQ=255)
tATGCCACTGTCAACTGCTGAATTTTTTTCTC‑GCGGCGGATTTT‑‑GCGCTCTTCCATTACCGCCACTATCGCCATCAGGCAGATACAACCAATCGCGGCGATATCCAGCGCGGCGAAGGTGCCTGCCCAGCCGGTAAGGCCGAATACCGGCg > 1:151782/1‑151 (MQ=255)
aTGCCACTGTCAACTGCTGAATTTTTTTCTC‑GCGGCGGATTTT‑‑GCGCTCTTCCATTACCGCCACTATCGCCATCAGGCAGATACAACCAATCGCGGCGATATCCAGCGCGGCGAAGGTGCCTGCCCAGCCGGTAAGGCCGAATACCGGCGt > 4:41108/1‑151 (MQ=255)
gCCACTGTCAACTGCTGAATTTTTTTCTC‑GCGGCGGATTTT‑‑GCGCTCTTCCATTACCGCCACTATCGCCATCAGGCAGATACAACCAATCGCGGCGATATCCAGCGCGGCGAAGGTGCCTGCCCAGCCGGTAAGGCCGAATACCGGCGTcc > 2:358560/1‑151 (MQ=255)
cACTGTCAACTGCTGAATTTTTTTCTC‑GCGGCGGATTTT‑‑GCGCTCTTCCATTACCGCCACTATCGCCATCAGGCAGATACAACCAATCGCGGCGATATCCAGCGCGGCGAAGGTGCCTGCCCAGCCGGTAAGGCCGAATACCGGCGTccc > 3:517726/1‑150 (MQ=255)
cACTGTCAACTGCTGAATTTTTTTCTC‑GCGGCGGATTTT‑‑GCGCTCTTCCATTACCGCCACTATCGCCATCAGGCAGATACAACCAATCGCGGCGATATCCAGCGCGGCGAAGGTGCCTGCCCAGCCGGTAAGGCCGAATACCGGCGTccc > 1:1219910/1‑150 (MQ=255)
cACTGTCAACTGCTGAATTTTTTTCTC‑GCGGCGGATTTT‑‑GCGCTCTTCCATTACCGCCACTATCGCCATCAGGCAGATACAACCAATCGCGGCGATATCCAGCGCGGCGAAGGTGCCTGCCCAGCCGGTAAGGCCGAATACCGGCGTccc > 3:269361/1‑150 (MQ=255)
aCTGTCAACTGCTGAATTTTTTTCTC‑GCGGCGGATTTT‑‑GCGCTCTTCCATTACCGCCACTATCGCCATCAGGCAGATACAACCAATCGCGGCGATATCCAGCGCGGCGAAGGTGCCTGCCCAGCCGGTAAGGCCGAATACCGGCGTCCCAt > 1:352610/1‑151 (MQ=255)
tGTCAACTGCTGAATTTTTTTCTC‑GCGGCGGATTTT‑‑GCGCTCTTCCATTACCGCCACTATCGCCATCAGGCAGATACAACCAATCGCGGCGATATCCAGCGCGGCGAAGGTGCCTGCCCAGCCGGTAAGGCCGAATACCGGCGTCCCATCg > 1:214861/1‑151 (MQ=255)
tgctgAATTTTTTTCTC‑GCGGCGGATTTT‑‑GCGCTCTTCCATTACCGCCACTATCGCCATCAGGCAGATACAACCAATCGCGGCGATATCCAGCGCGGCGAAGGTGCCTGCCCAGCCGGTAAGGCCGAATACCGGCGTCCCATCGGCTATc > 4:1299650/1‑150 (MQ=255)
tgttattttttttCGC‑GGGGCGGTTTTG‑‑CCCCTCTCCCATCACCGCCACTATCGCCATCAGGCAGATACAACCAATCGCGGCGATATCCAGCGCGGCGAAGGTGCCTGCCCAGCCGGTAAGGCCGAATACCGGCGTCCCATCGGCaa < 3:79046/141‑1 (MQ=255)
tctttaTTTTTTTC‑C‑GCGGGGGGTTTTTGGCCTTCTTCTTTTCCCGCCACTATCGCCATCAGGCAGATACAACCAATCGCGGCGATATCCAGCGCGGCGAAGGTGCCTGCCCAGCCGGTAAGGCCGAATACCGGCGTCCCATCGGCAAt < 4:1169655/144‑1 (MQ=255)
gAATTTTTTTCTC‑GCGGCGGATTTT‑‑GCGCTCTTCCATTACCGCCACTATCGCCATCAGGCAGATACAACCAATCGCGGCGATATCCAGCGCGGCGAAGGTGCCTGCCCAGCCGGTAAGGCCGAATACCGGCGTCCCATCGGCAATCATTcc > 2:6027/1‑151 (MQ=255)
aaTTTTTTTCTC‑GCGGCGGATTTT‑‑GCGCTCTTCCATTACCGCCACTATCGCCATCAGGCAGATACAACCAATCGCGGCGATATCCAGCGCGGCGAAGGTGCCTGCCCAGCCGGTAAGGCCGAATACCGGCGTCCCATCGGCAATCATTccc > 1:273966/1‑151 (MQ=255)
tttttttCTC‑GCGGCGGATTTT‑‑GCGCTCTTCCATTACCGCCACTATCGCCATCAGGCAGATACAACCAATCGCGGCGATATCCAGCGCGGCGAAGGTGCCTGCCCAGCCGGTAAGGCCGAATACCGGCGTCCCATCGGCAATCATTccc > 1:358183/1‑149 (MQ=255)
tttttttCCC‑GGGGGGATTTTT‑‑CCCTGCTCCCTTAACCGCCACTATCGCCATCAGGCAGATACAACCAATCGCGGCGATATCCAGCGCGGCGAAGGTGCCTGCCCAGCCGGTAAGGCCGAATACCGGCGTCCCATCGGCAATc < 1:1631939/143‑1 (MQ=255)
ttttttCTC‑GCGGCGGATTTT‑‑GCGCTCTTCCATTACCGCCACTATCGCCATCAGGCAGATACAACCAATCGCGGCGATATCCAGCGCGGCGAAGGTGCCTGCCCAGCCGGTAAGGCCG‑ATACCGGCCGCCCATTGGGAATTCTTccc > 1:1785058/1‑147 (MQ=255)
tttttCTC‑GCGGCGGATTTT‑‑GCGCTCTTCCATTACCGCCACTATCGCCATCAGGCAGATACAACCAATCGCGGCGATATCCAGCGCGGCGAAGGTGCCTGCCCAGCCGGTAAGGCCGAATACCGGCGTCCCATCGGCAATCATTCCCAGAc > 3:115649/1‑151 (MQ=255)
tttttCTC‑GCGGCGGATTTT‑‑GCGCTCTTCCATTACCGCCACTATCGCCATCAGGCAGATACAACCAATCGCGGCGATATCCAGCGCGGCGAAGGTGCCTGCCCAGCCGGTAAGGCCGAATACCGGCGTCCCATCGGCAATCATTCCCAGAc > 4:1099360/1‑151 (MQ=255)
tttttCTC‑GCGGCGGATTTT‑‑GCGCTCTTCCATTACCGCCACTATCGCCATCAGGCAGATACAACCAATCGCGGCGATATCCAGCGCGGCGAAGGTGCCTGCCCAGCCGGTAAGGCCGAATACCGGCGTCCCATCGGCAATCATTCCCAGAc > 4:521104/1‑151 (MQ=255)
tttcccggcggggGTTTTT‑‑GCCCTTTCCTATTCCCGCCACTATCGCCATCAGGCAGATACAACCAATCGCGGCGATATCCAGCGCGGCGAAGGTGCCTGCCCAGCCGGTAAGGCCGAATACCGGCGTCCCATCGGCAATCATTCCCAGAc < 4:186715/143‑1 (MQ=255)
tttCTC‑GCGGCGGATTTT‑‑GCGTTCTTCCATTACCGCCACTATCGCCATCAGGCAGATACAACCAATCGCGGCGATATCCAGCGCGGCGAAGGTGCCTGCCCAGCCGGTAAGGCCGAATACCGGCGTCCCATCGGCAATCATTCCCAGACCt > 4:1859163/1‑151 (MQ=255)
ttCTC‑GCGGCGGATTTT‑‑GCGCTCTTCCATTACCGCCACTATCGCCATCAGGCAGATACAACCAATCGCGGCGATATCCAGCGCGGCGAAGGTGCCTGCCCAGCCGGTAAGGCCGAATACCGGCGTCCCATCGGCAATCATTCCCAGACCt > 2:137448/1‑150 (MQ=255)
tctc‑GCGGCGGATTTT‑‑GCGCTCTTCCATTACCGCCACTATCGCCATCAGGCAGATACAACCAATCGCGGCGATATCCAGCGCGGCGAAGGTGCCTGCCCAGCCGGTAAGGCCGAATACCGGCGTCCCATCGGCAATCATTCCCAGACCTa > 1:148803/1‑150 (MQ=255)
ctc‑GCGGCGGATTTT‑‑GCGCTCTTCCATTACCGCCACTATCGCCATCAGGCAGATACAACCAATCGCGGCGATATCCAGCGCGGCGAAGGTGCCTGCCCAGCCGGTAAGGCCGAATACCGGCGTCCCATCGGCAATCATTCCCAGACCTAAc > 1:535015/1‑151 (MQ=255)
ggcggATTTT‑‑GCGCTCTTCCATTACCGCCACTATCGCCATCAGGCAGATACAACCAATCGCGGCGATATCCAGCGCGGCGAAGGTGCCTGCCCAGCCGGTAAGGCCGAATACCGGCGTCCCATCGGCAATCATTCCCAGACCTAACTTGGc > 4:11967/1‑151 (MQ=255)
ggATTTT‑‑GCGCTCTTCCATTACCGCCACTATCGCCATCAGGCAGATACAACCAATCGCGGCGATATCCAGCGCGGCGAAGGTGCCTGCCCAGCCGGTAAGGCCGAATACCGGCGTCCCATCGGCAATCATTCCCAGACCTAACTTGGCaa > 4:4179/1‑150 (MQ=255)
ggATTTT‑‑GCGCTCTTCCATTACCGCCACTATCGCCATCAGGCAGATACAACCAATCGCGGCGATATCCAGCGCGGCGAAGGTGCCTGCCCAGCCGGTAAGGCCGAATACCGGCGTCCCATCGGCAATCATTCCCAGACCTAACTTGGCaa > 2:435312/1‑150 (MQ=255)
ggATTTT‑‑GCGCTCTTCCATTACCGCCACTATCGCCATCAGGCAGATACAACCAATCGCGGCGATATCCAGCGCGGCGAAGGTGCCTGCCCAGCCGGTAAGGCCGAATACCGGCGTCCCATCGGCAATCATTCCCAGACCTAACTTGGCaa > 1:1862876/1‑150 (MQ=255)
ggATTTT‑‑GCGCTCTTCCATTACCGCCACTATCGCCATCAGGCAGATACAACCAATCGCGGCGATATCCAGCGCGGCGAAGGTGCCTGCCCAGCCGGTAAGGCCGAATACCGGCGTCCCATCGGCAATCATTCCCAGACCTAACTTGGCaa > 1:1110121/1‑150 (MQ=255)
ggATTTT‑‑GCGCTCTTCCATTACCGCCACTATCGCCATCAGGCAGATACAACCAATCGCGGCGATATCCAGCGCGGCGAAGGTGCCTGCCCAGCCGGTAAGGCCGAATACCGGCGTCCCATCGGCAATCATTCCCAGACCTAACTTGGCa > 1:377172/1‑149 (MQ=255)
gATTTT‑‑GCGTTCTTCCATTACCGCCACTATCGCCATCAGGCAGATACAACCAATCGCGGCGATATCCAGCGCGGCGAAGGTGCCTGCCCAGCCGGTAAGGCCGAATACCGGCGTCCCATCGGCAATCATTCCCAGACCTAACTTGGCaa > 1:271435/1‑149 (MQ=255)
gATTTT‑‑GCGCTCTTCCATTACCGCCACTATCGCCATCAGGCAGATACAACCAATCGCGGCGATATCCAGCGCGGCGAAGGTGCCTGCCCAGCCGGTAAGGCCGAATACCGGCGTCCCATCGGCAATCATTCCCAGACCTAACTTGGCaa > 4:1222178/1‑149 (MQ=255)
aTTTT‑‑GCGCTCTTCCATTACCGCCACTATCGCCATCAGGCAGATACAACCAATCGCGGCGATATCCAGCGCGGCGAAGGTGCCTGCCCAGCCGGTAAGGCCGAATACCGGCGTCCCATCGGCAATCATTCCCAGACCTAACTTGGCAAAGc > 2:388228/1‑151 (MQ=255)
t‑‑GCGCTCTTCCATTACCGCCACTATCGCCATCAGGCAGATACAACCAATCGCGGCGATATCCAGCGCGGCGAAGGTGCCTGCCCAGCCGGTAAGGCCGAATACCGGCGTCCCATCGGCAATCATTCCCAGACCTAACTTGGCAAAGCTGTc > 1:358168/1‑151 (MQ=255)
t‑‑GCGCTCTTCCATTACCGCCACTATCGCCATCAGGCAGATACAACCAATCGCGGCGATATCCAGCGCGGCGAAGGTGCCTGCCCAGCCGGTAAGGCCGAATACCGGCGTCCCATCGGCAATCATTCCCAGACCTAACTTGGCAAAGCTGTc > 2:41702/1‑151 (MQ=255)
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GGGGCTATTTGATGGCGAGAAGTTTGCCTTCACTACGCTGGAAGTCACGGAATAATAAAAAAAGCCCGGCGTCATGCCGGGCAAAAGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTCTC‑GCGGCGGATTTT‑‑GCGTTCTTCCATTACCGCCACTATCGCCATCAGGCAGATACAACCAATCGCGGCGATATCCAGCGCGGCGAAGGTGCCTGCCCAGCCGGTAAGGCCGAATACCGGCGTCCCATCGGCAATCATTCCCAGACCTAACTTGGCAAAGCTGTC > NC_000913/3845676‑3845970
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
