Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A8 F50 I2 R1 150 68.2 2132745 98.7% 2105019 150.2

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,855,661 A→G F104L (TTT→CTT)  yidG ← inner membrane protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,855,6610AG100.0% 278.3 / NA 71F104L (TTT→CTT) yidGinner membrane protein
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (29/42);  total (29/42)

GAAATTGTGATAAAAATCGGCAGGTTGCAGAGCATCCTTGTACTCTACAACCAGTTTATGCCTGTCCTCTTCAGCATCAATGACCTGACTTCCTGTCATGCGACTCTCTCAATAAATACGATAAGTTGATGTATATGCGTTACAGCAAACAGTATTGCGAGAGATAACACCGCGAGGGAGATCAAAAATTTGTCACGGACTACGTGAAATTGGGAAAAATCGCTATTCGTGACATCCATTAAATTGCGATTACGGGTGTAGTGCCAGAGGATCAGCGCCACGATGGCGAGAATGCC  >  NC_000913/3855513‑3855808
                                                                                                                                                    |                                                                                                                                                   
gAAATTGTGATAAAAATCGGCAGGTTGCAGAGCATCCTTGTACTCTACAACCAGTTTATGCCTGTCCTCTTCAGCATCAATGACCTGACTTCCTGTCATGCGACTCTCTCAATAAATACGATAAGTTGATGTATATGCGTTACagcaagca                                                                                                                                                   <  2:762435/151‑1 (MQ=255)
        gATAAAAATCGGCAGGTTGCAGAGCATCCTTGTACTCTACAACCAGTTTATGCCTGTCCTCTTCAGCATCAATGACCTGACTTCCTGTCATGCGACTCTCTCAATAAATACGATAAGTTGATGTATATGCGTTACAGCAAGCAGTATTGCg                                                                                                                                           <  1:605632/151‑1 (MQ=255)
         aTAAAAATCGGCAGGTTGCAGAGCATCCTTGTACTCTACAACCAGTTTATGCCTGTCCTCTTCAGCATCAATGACCTGACTTCCTGTCATGCGACTCTCTCAATAAATACGATAAGTTGATGTATATGCGTTACAGCAAGCAGTATTGCga                                                                                                                                          <  1:991911/151‑1 (MQ=255)
         aTAAAAATCGGCAGGTTGCAGAGCATCCTTGTACTCTACAACCAGTTTATGCCTGTCCTCTTCAGCATCAATGACCTGACTTCCTGTCATGCGACTCTCTCAATAAATACGATAAGTTGATGTATATGCGTTACAGCAAGCAGTATTGCg                                                                                                                                           >  1:1040166/1‑150 (MQ=255)
               aTCGGCAGGTTGCAGAGCATCCTTGTACTCTACAACCAGTTTATGCCTGTCCTCTTCAGCATCAATGACCTGACTTCCTGTCATGCGACTCTCTCAATAAATACGATAAGTTGATGTATATGCGTTACAGCAAGCAGTATTGCGAGAGATa                                                                                                                                    <  2:898213/151‑1 (MQ=255)
                 cGGCAGGTTGCAGAGCATCCTTGTACTCTACAACCAGTTTATGCCTGTCCTCTTCAGCATCAATGACCTGACTTCCTGTCATGCGACTCTCTCAATAAATACGATAAGTTGATGTATATGCGTTACAGCAAGCAGTATTGCGAGAGATAac                                                                                                                                  <  1:908862/151‑1 (MQ=255)
                 cGGCAGGTTGCAGAGCATCCTTGTACTCTACAACCAGTTTATGCCTGTCCTCTTCAGCATCAATGACCTGACTTCCTGTCATGCGACTCTCTCAATAAATACGATAAGTTGATGTATATGCGTTACAGCAAGCAGTATTGCGAGAGATAac                                                                                                                                  <  1:772507/151‑1 (MQ=255)
                  ggCAGGTTGCAGAGCATCCTTGTACTCTACAACCAGTTTATGCCTGTCCTCTTCAGCATCAATGACCTGACTTCCTGTCATGCGACTCTCTCAATAAATACGATAAGTTGATGTATATGCGTTACAGCAAGCAGTATTGCGAGAGATAaca                                                                                                                                 <  2:552139/151‑1 (MQ=255)
                   gCAGGTTGCAGAGCATCCTTGTACTCTACAACCAGTTTATGCCTGTCCTCTTCAGCATCAATGACCTGACTTCCTGTCATGCGACTCTCTCAATAAATACGATAAGTTGATGTATATGCGTTACAGCAAGCAGTATTGCGAGAGATAacac                                                                                                                                <  2:11596/151‑1 (MQ=255)
                       gTTGCAGAGCATCCTTGTACTCTACAACCAGTTTATGCCTGTCCTCTTCAGCATCAATGACCTGACTTCCTGTCATGCGACTCTCTCAATAAATACGATAAGTTGATGTATATGCGTTACAGCAAGCAGTATTGCGAGAGATAACACcgcg                                                                                                                            <  2:673081/151‑1 (MQ=255)
                        ttGCAGAGCATCCTTGTACTCTACAACCAGTTTATGCCTGTCCTCTTCAGCATCAATGACCTGACTTCCTGTCATGCGACTCTCTCAATAAATACGATAAGTTGATGTATATGCGTTACAGCAAGCAGTATTGCGAGAGATAACACcgcg                                                                                                                            >  1:529486/1‑150 (MQ=255)
                         tGCAGAGCATCCTTGTACTCTACAACCAGTTTATGCCTGTCCTCTTCAGCATCAATGACCTGACTTCCTGTCATGCGACTCTCTCAATAAATACGATAAGTTGATGTATATGCGTTACAGCAAGCAGTATTGCGAGAGATAACACCGCGa                                                                                                                           <  1:102340/150‑1 (MQ=255)
                           cAGAGCATCCTTGTACTCTACAACCAGTTTATGCCTGTCCTCTTCAGCATCAATGACCTGACTTCCTGTCATGCGACTCTCTCAATAAATACGATAAGTTGATGTATATGCGTTACAGCAAGCAGTATTGCGAGAGATAACACCGCGAggg                                                                                                                        <  2:843736/151‑1 (MQ=255)
                            agagCATCCTTGTACTCTACAACCAGTTTATGCCTGTCCTCTTCAGCATCAATGACCTGACTTCCTGTCATGCGACTCTCTCAATAAATACGATAAGTTGATGTATATGCGTTACAGCAAGCAGTATTGCGAGAGATAACACCGCGAggg                                                                                                                        >  2:582011/1‑150 (MQ=255)
                              agCATCCTTGTACTCTACAACCAGTTTATGCCTGTCCTCTTCAGCATCAATGACCTGACTTCCTGTCATGCGACTCTCTCAATAAATACGATAAGTTGATGTATATGCGTTACAGCAAGCAGTATTGCGAGAGATAACACCGCGAGGgaga                                                                                                                     <  1:488707/151‑1 (MQ=255)
                                 aTCCTTGTACTCTACAACCAGTTTATGCCTGTCCTCTTCAGCATCAATGACCTGACTTCCTGTCATGCGACTCTCTCAATAAATACGATAAGTTGATGTATATGCGTTACAGCAAGCAGTATTGCGAGAGATAACACCGCGAGGGAGATCa                                                                                                                  <  1:74807/151‑1 (MQ=255)
                                       gTACTCTACAACCAGTTTATGCCTGTCCTCTTCAGCATCAATGACCTGACTTCCTGTCATGCGACTCTCTCAATAAATACGATAAGTTGATGTATATGCGTTACAGCAAGCAGTATTGCGAGAGATAACACCGCGAGGGAGATCAAAAAtt                                                                                                            <  2:575948/151‑1 (MQ=255)
                                        tACTCTACAACCAGTTTATGCCTGTCCTCTTCAGCATCAATGACCTGACTTCCTGTCATGCGACTCTCTCAATAAATACGATAAGTTGATGTATATGCGTTACAGCAAGCAGTATTGCGAGAGATAACACCGCGAGGGAGATCAAAAAttt                                                                                                           >  1:818415/1‑151 (MQ=255)
                                         aCTCTACAACCAGTTTATGCCTGTCCTCTTCAGCATCAATGACCTGACTTCCTGTCATGCGACTCTCTCAATAAATACGATAAGTTGATGTATATGCGTTACAGCAAGCAGTATTGCGAGAGATAACACCGCGAGGGAGATCAAAAAttt                                                                                                           <  1:1017471/150‑1 (MQ=255)
                                           tctACAACCAGTTTATGCCTGTCCTCTTCAGCATCAATGACCTGACTTCCTGTCATGCGACTCTCTCAATAAATACGATAAGTTGATGTATATGCGTTACAGCAAGCAGTATTGCGAGAGATAACACCGCGAGGGAGATCAAAAATTTGTc                                                                                                        >  1:611078/1‑151 (MQ=255)
                                           tctACAACCAGTTTATGCCTGTCCTCTTCAGCATCAATGACCTGACTTCCTGTCATGCGACTCTCTCAATAAATACGATAAGTTGATGTATATGCGTTACAGCAAGCAGTATTGCGAGAGATAACACCGCGAGGGAGATCAAAAATTTGTc                                                                                                        >  1:524401/1‑151 (MQ=255)
                                              aCAACCAGTTTATGCCTGTCCTCTTCAGCATCAATGACCTGACTTCCTGTCATGCGACTCTCTCAATAAATACGATAAGTTGATGTATATGCGTTACAGCAAGCAGTATTGCGAGAGATAACACCGCGAGGGAGATCAAAAATTTGTCACg                                                                                                     >  1:1054165/1‑151 (MQ=255)
                                               cAACCAGTTTATGCCTGTCCTCTTCAGCATCAATGACCTGACTTCCTGTCATGCGACTCTCTCAATAAATACGATAAGTTGATGTATATGCGTTACAGCAAGCAGTATTGCGAGAGATAACACCGCGAGGGAGATCAAAAATTTGTCACgg                                                                                                    <  1:868963/151‑1 (MQ=255)
                                                aaCCAGTTTATGCCTGTCCTCTTCAGCATCAATGACCTGACTTCCTGTCATGCGACTCTCTCAATAAATACGATAAGTTGATGTATATGCGTTACAGCAAGCAGTATTGCGAGAGATAACACCGCGAGGGAGATCAAAAATTTGTCACgg                                                                                                    >  1:453501/1‑150 (MQ=255)
                                                 aCCAGTTTATGCCTGTCCTCTTCAGCATCAATGACCTGACTTCCTGTCATGCGACTCTCTCAATAAATACGATAAGTTGATGTATATGCGTTACAGCAAGCAGTATTGCGAGAGATAACACCGCGAGGGAGATCAAAAATTTGTCACGGAc                                                                                                  <  2:18330/151‑1 (MQ=255)
                                                     gTTTATGCCTGTCCTCTTCAGCATCAATGACCTGACTTCCTGTCATGCGACTCTCTCAATAAATACGATAAGTTGATGTATATGCGTTACAGCAAGCAGTATTGCGAGAGATAACACCGCGAGGGAGATCAAAAATTTGTCACGGACTACg                                                                                              <  1:953352/151‑1 (MQ=255)
                                                        tATGCCTGTCCTCTTCAGCATCAATGACCTGACTTCCTGTCATGCGACTCTCTCAATAAATACGATAAGTTGATGTATATGCGTTACAGCAAGCAGTATTGCGAGAGATAACACCGCGAGGGAGATCAAAAATTTGTCACGGACTACGTg                                                                                            >  1:484997/1‑150 (MQ=255)
                                                         aTGCCTGTCCTCTTCAGCATCAATGACCTGACTTCCTGTCATGCGACTCTCTCAATAAATACGATAAGTTGATGTATATGCGTTACAGCAAGCAGTATTGCGAGAGATAACACCGCGAGGGAGATCAAAAATTTGTCACGGACTACGTGa                                                                                           <  2:834388/150‑1 (MQ=255)
                                                           gCCTGTCCTCTTCAGCATCAATGACCTGACTTCCTGTCATGCGACTCTCTCAATAAATACGATAAGTTGATGTATATGCGTTACAGCAAGCAGTATTGCGAGAGATAACACCGCGAGGGAGATCAAAAATTTGTCACGGACTACGTGAAAt                                                                                        >  2:427708/1‑151 (MQ=255)
                                                             cTGTCCTCTTCAGCATCAATGACCTGACTTCCTGTCATGCGACTCTCTCAATAAATACGATAAGTTGATGTATATGCGTTACAGCAAGCAGTATTGCGAGAGATAACACCGCGAGGGAGATCAAAAATTTGTCACGGACTACGTGAAATTg                                                                                      >  2:205468/1‑151 (MQ=255)
                                                               gTCCTCTTCAGCATCAATGACCTGACTTCCTGTCATGCGACTCTCTCAATAAATACGATAAGTTGATGTATATGCGTTACAGCAAGCAGTATTGCGAGAGATAACACCGCGAGGGAGATCAAAAATTTGTCACGGACTACGTGAAATTggg                                                                                    >  2:318411/1‑151 (MQ=255)
                                                                      tCAGCATCAATGACCTGACTTCCTGTCATGCGACTCTCTCAATAAATACGATAAGTTGATGTATATGCGTTACAGCAAGCAGTATTGCGAGAGATAACACCGCGAGGGAGATCAAAAATTTGTCACGGACTACGTGAAATTGGGAAAAAt                                                                              <  2:947423/150‑1 (MQ=255)
                                                                       cAGCATCAATGACCTGACTTCCTGTCATGCGACTCTCTCAATAAATACGATAAGTTGATGTATATGCGTTACAGCAAGCAGTATTGCGAGAGATAACACCGCGAGGGAGATCAAAAATTTGTCACGGACTACGTGAAATTGGGAAAAATc                                                                             <  2:736771/150‑1 (MQ=255)
                                                                              aaTGACCTGACTTCCTGTCATGCGACTCTCTCAATAAATACGATAAGTTGATGTATATGCGTTACAGCAAGCAGTATTGCGAGAGATAACACCGCGAGGGAGATCAAAAATTTGTCACGGACTACGTGAAATTGGGAAAAATCGCTATTCg                                                                     >  2:611439/1‑151 (MQ=255)
                                                                                 gACCTGACTTCCTGTCATGCGACTCTCTCAATAAATACGATAAGTTGATGTATATGCGTTACAGCAAGCAGTATTGCGAGAGATAACACCGCGAGGGAGATCAAAAATTTGTCACGGACTACGTGAAATTGGGAAAAATCGCTATTCGTg                                                                   <  2:702689/150‑1 (MQ=255)
                                                                                  aCCTGACTTCCTGTCATGCGACTCTCTCAATAAATACGATAAGTTGATGTATATGCGTTACAGCAAGCAGTATTGCGAGAGATAACACCGCGAGGGAGATCAAAAATTTGTCACGGACTACGTGAAATTGGGAAAAATCGCTATTCGTGAc                                                                 <  1:981279/151‑1 (MQ=255)
                                                                                          tCCTGTCATGCGACTCTCTCAATAAATACGATAAGTTGATGTATATGCGTTACAGCAAGCAGTATTGCGAGAGATAACACCGCGAGGGAGATCAAAAATTTGTCACGGACTACGTGAAATTGGGAAAAATCGCTATTCGTGACATCCAtt                                                          <  2:328893/150‑1 (MQ=255)
                                                                                          tCCTGTCATGCGACTCTCTCAATAAATACGATAAGTTGATGTATATGCGTTACAGCAAGCAGTATTGCGAGAGATAACACCGCGAGGGAGATCAAAAATTTGTCACGGACTACGTGAAATTGGGAAAAATCGCTATTCGTGACATCCAtt                                                          <  2:731672/150‑1 (MQ=255)
                                                                                            cTGTCATGCGACTCTCTCAATAAATACGATAAGTTGATGTATATGCGTTACAGCAAGCAGTATTGCGAGAGATAACACCGCGAGGGAGATCAAAAATTTGTCACGGACTACGTGAAATTGGGAAAAATCGCTATTCGTGACATCCATTaa                                                        >  1:795403/1‑150 (MQ=255)
                                                                                             tGTCATGCGACTCTCTCAATAAATACGATAAGTTGATGTATATGCGTTACAGCAAGCAGTATTGCGAGAGATAACACCGCGAGGGAGATCAAAAATTTGTCACGGACTACGTGAAATTGGGAAAAATCGCTATTCGTGACATCCATTAAAt                                                      >  1:954765/1‑151 (MQ=255)
                                                                                              gTCATGCGACTCTCTCAATAAATACGATAAGTTGATGTATATGCGTTACAGCAAGCAGTATTGCGAGAGATAACACCGCGAGGGAGATCAAAAATTTGTCACGGACTACGTGAAATTGGGAAAAATCGCTATTCGTGACATCCATTAAAtt                                                     <  2:524386/151‑1 (MQ=255)
                                                                                              gTCATGCGACTCTCTCAATAAATACGATAAGTTGATGTATATGCGTTACAGCAAGCAGTATTGCGAGAGATAACACCGCGAGGGAGATCAAAAATTTGTCACGGACTACGTGAAATTGGGAAAAATCGCTATTCGTGACATCCATTAAAtt                                                     <  1:969844/151‑1 (MQ=255)
                                                                                                cATGCGACTCTCTCAATAAATACGATAAGTTGATGTATATGCGTTACAGCAAGCAGTATTGCGAGAGATAACACCGCGAGGGAGATCAAAAATTTGTCACGGACTACGTGAAATTGGGAAAAATCGCTATTCGTGACATCCATTAAATTGc                                                   <  1:442929/151‑1 (MQ=255)
                                                                                                 aTGCGACTCTCTCAATAAATACGATAAGTTGATGTATATGCGTTACAGCAAGCAGTATTGCGAGAGATAACACCGCGAGGGAGATCAAAAATTTGTCACGGACTACGTGAAATTGGGAAAAATCGCTATTCGTGACATCCATTAAATTGCg                                                  <  2:646238/151‑1 (MQ=255)
                                                                                                     gACTCTCTCAATAAATACGATAAGTTGATGTATATGCGTTACAGCAAGCAGTATTGCGAGAGATAACACCGCGAGGGAGATCAAAAATTTGTCACGGACTACGTGAAATTGGGAAAAATCGCTATTCGTGACATCCATTAAATTGCGAtt                                               >  1:518740/1‑150 (MQ=255)
                                                                                                      aCTCTCTCAATAAATACGATAAGTTGATGTATATGCGTTACAGCAAGCAGTATTGCGAGAGATAACACCGCGAGGGAGATCAAAAATTTGTCACGGACTACGTGAAATTGGGAAAAATCGCTATTCGTGACATCCATTAAATTGCGATTAc                                             >  2:868826/1‑151 (MQ=255)
                                                                                                       ctctctCAATAAATACGATAAGTTGATGTATATGCGTTACAGCAAGCAGTATTGCGAGAGATAACACCGCGAGGGAGATCAAAAATTTGTCACGGACTACGTGAAATTGGGAAAAATCGCTATTCGTGACATCCATTAAATTGCGATTACg                                            >  2:348092/1‑151 (MQ=255)
                                                                                                             cAATAAATACGATAAGTTGATGTATATGCGTTACAGCAAGCAGTATTGCGAGAGATAACACCGCGAGGGAGATCAAAAATTTGTCACGGACTACGTGAAATTGGGAAAAATCGCTATTCGTGACATCCATTAAATTGCGATTACGGgt                                         <  2:541445/148‑1 (MQ=255)
                                                                                                              aataaataCGATAAGTTGATGTATATGCGTTACAGCAAGCAGTATTGCGAGAGATAACACCGCGAGGGAGATCAAAAATTTGTCACGGACTACGTGAAATTGGGAAAAATCGCTATTCGTGACATCCATTAAATTGCGATTACGGgtgt                                       >  1:685178/1‑149 (MQ=255)
                                                                                                              aataaataCGATAAGTTGATGTATATGCGTTACAGCAAGCAGTATTGCGAGAGATAACACCGCGAGGGAGATCAAAAATTTGTCACGGACTACGTGAAATTGGGAAAAATCGCTATTCGTGACATCCATTAAATTGCGATTACGGGTGTAg                                     <  1:868859/151‑1 (MQ=255)
                                                                                                               ataaataCGATAAGTTGATGTATATGCGTTACAGCAAGCAGTATTGCGAGAGATAACACCGCGAGGGAGATCAAAAATTTGTCACGGACTACGTGAAATTGGGAAAAATCGCTATTCGTGACATCCATTAAATTGCGATTACGGGTGTAg                                     >  2:5545/1‑150 (MQ=255)
                                                                                                               ataaataCGATAAGTTGATGTATATGCGTTACAGCAAGCAGTATTGCGAGAGATAACACCGCGAGGGAGATCAAAAATTTGTCACGGACTACGTGAAATTGGGAAAAATCGCTATTCGTGACATCCATTAAATTGCGATTACGGGTGTAGt                                    >  2:921931/1‑151 (MQ=255)
                                                                                                                  aataCGATAAGTTGATGTATATGCGTTACAGCAAGCAGTATTGCGAGAGATAACACCGCGAGGGAGATCAAAAATTTGTCACGGACTACGTGAAATTGGGAAAAATCGCTATTCGTGACATCCATTAAATTGCGATTACGGGTGTAGTGcc                                 >  2:959492/1‑151 (MQ=255)
                                                                                                                     aCGATAAGTTGATGTATATGCGTTACAGCAAGCAGTATTGCGAGAGATAACACCGCGAGGGAGATCAAAAATTTGTCACGGACTACGTGAAATTGGGAAAAATCGCTATTCGTGACATCCATTAAATTGCGATTACGGGTGTAGTGCCaga                              <  1:24603/151‑1 (MQ=255)
                                                                                                                     aCGATAAGTTGATGTATATGCGTTACAGCAAGCAGTATTGCGAGAGATAACACCGCGAGGGAGATCAAAAATTTGTCACGGACTACGTGAAATTGGGAAAAATCGCTATTCGTGACATCCATTAAATTGCGATTACGGGTGTAGTGCCaga                              <  2:1019605/151‑1 (MQ=255)
                                                                                                                     aCGATAAGTTGATGTATATGCGTTACAGCAAGCAGTATTGCGAGAGATAACACCGCGAGGGAGATCAAAAATTTGTCACGGACTACGTGAAATTGGGAAAAATCGCTATTCGTGACATCCATTAAATTGCGATTACGGGTGTAGTGCCag                               <  1:602207/150‑1 (MQ=255)
                                                                                                                      cGATAAGTTGATGTATATGCGTTACAGCAAGCAGTATTGCGAGAGATAACACCGCGAGGGAGATCAAAAATTTGTCACGGACTACGTGAAATTGGGAAAAATCGCTATTCGTGACATCCATTAAATTGCGATTACGGGTGTAGTGCCag                               >  2:124412/1‑149 (MQ=255)
                                                                                                                            gTTGATGTATATGCGTTACAGCAAGCAGTATTGCGAGAGATAACACCGCGAGGGAGATCAAAAATTTGTCACGGACTACGTGAAATTGGGAAAAATCGCTATTCGTGACATCCATTAAATTGCGATTACGGGTGTAGTGCCAGAGGATCAg                       <  1:317611/151‑1 (MQ=255)
                                                                                                                            gTTGATGTATATGCGTTACAGCAAGCAGTATTGCGAGAGATAACACCGCGAGGGAGATCAAAAATTTGTCACGGACTACGTGAAATTGGGAAAAATCGCTATTCGTGACATCCATTAAATTGCGATTACGGGTGTAGTGCCAGAGGATCAg                       <  2:803996/151‑1 (MQ=255)
                                                                                                                              tGATGTATATGCGTTACAGCAAGCAGTATTGCGAGAGATAACACCGCGAGGGAGATCAAAAATTTGTCACGGACTACGTGAAATTGGGAAAAATCGCTATTCGTGACATCCATTAAATTGCGATTACGGGTGTAGTGCCAGAGGATCAgcg                     >  2:399611/1‑151 (MQ=255)
                                                                                                                              tGATGTATATGCGTTACAGCAAGCAGTATTGCGAGAGATAACACCGCGAGGGAGATCAAAAATTTGTCACGGACTACGTGAAATTGGGAAAAATCGCTATTCGTGACATCCATTAAATTGCGATTACGGGTGTAGTGCCAGAGGATCAgc                      <  2:144690/150‑1 (MQ=255)
                                                                                                                               gATGTATATGCGTTACAGCAAGCAGTATTGCGAGAGATAACACCGCGAGGGAGATCAAAAATTTGTCACGGACTACGTGAAATTGGGAAAAATCGCTATTCGTGACATCCATTAAATTGCGATTACGGGTGTAGTGCCAGAGGATCAgcg                     <  1:167030/150‑1 (MQ=255)
                                                                                                                               gATGTATATGCGTTACAGCAAGCAGTATTGCGAGAGATAACACCGCGAGGGAGATCAAAAATTTGTCACGGACTACGTGAAATTGGGAAAAATCGCTATTCGTGACATCAATTAAATTGCGATTACGGGTGTAGTGCCAGAGGATCAgcg                     <  1:538799/150‑1 (MQ=255)
                                                                                                                                aTGTATATGCGTTACAGCAAGCAGTATTGCGAGAGATAACACCGCGAGGGAGATCAAAAATTTGTCACGGACTACGTGAAATTGGGAAAAATCGCTATTCGTGACATCCATTAAATTGCGATTACGGGTGTAGTGCCAGAGGATCAGCGcc                   <  1:81482/151‑1 (MQ=255)
                                                                                                                                  gTATATGCGTTACAGCAAGCAGTATTGCGAGAGATAACACCGCGAGGGAGATCAAAAATTTGTCACGGACTACGTGAAATTGGGAAAAATCGCTATTCGTGACATCCATTAAATTGCGATTACGGGTGTAGTGCCAGAGGATCAGCGCCa                  <  2:166439/150‑1 (MQ=255)
                                                                                                                                      atGCGTTACAGCAAGCAGTATTGCGAGAGATAACACCGCGAGGGAGATCAAAAATTTGTCACGGACTACGTGAAATTGGGAAAAATCGCTATTCGTGACATCCATTAAATTGCGATTACGGGTGTAGTGCCAGAGGATCAGCGCCACGATg             >  2:314187/1‑151 (MQ=255)
                                                                                                                                            tACAGCAAGCAGTATTGCGAGAGATAACACCGCGAGGGAGATCAAAAATTTGTCACGGACTACGTGAAATTGGGAAAAATCGCTATTCGTGACATCCATTAAATTGCGATTACGGGTGTAGTGCCAGAGGATCAGCGCCACGATGGCgag        <  1:588614/150‑1 (MQ=255)
                                                                                                                                            tACAGCAAGCAGTATTGCGAGAGATAACACCGCGAGGGAGATCAAAAATTTGTCACGGACTACGTGAAATTGGGAAAAATCGCTATTCGTGACATCCATTAAATTGCGATTACGGGTGTAGTGCCAGAGGATCAGCGCCACGATGGCg          >  1:663757/1‑148 (MQ=255)
                                                                                                                                            tACAGCAAGCAGTATTGCGAGAGATAACACCGCGAGGGAGATCAAAAATTTGTCACGGACTACGTGAAATTGGGAAAAATCGCTATTCGTGACATCCATTAAATTGCGATTACGGGTGTAGTGCCAGAGGATCAGCGCCACGATGGCg          >  1:962239/1‑148 (MQ=255)
                                                                                                                                              cAGCAAGCAGTATTGCGAGAGATAACACCGCGAGGGAGATCAAAAATTTGTCACGGACTACGTGAAATTGGGAAAAATCGCTATTCGTGACATCCATTAAATTGCGATTACGGGTGTAGTGCCAGAGGATCAGCGCCACGATGGCGAGAAt     >  2:334013/1‑151 (MQ=255)
                                                                                                                                                gCAAGCAGTATTGCGAGAGATAACACCGCGAGGGAGATCAAAAATTTGTCACGGACTACGTGAAATTGGGAAAAATCGCTATTCGTGACATCCATTAAATTGCGATTACGGGTGTAGTGCCAGAGGATCAGCGCCACGATGGCGAGAATGc   <  1:62463/151‑1 (MQ=255)
                                                                                                                                                 cAAGCAGTATTGCGAGAGATAACACCGCGAGGGAGATCAAAAATTTGTCACGGACTACGTGAAATTGGGAAAAATCGCTATTCGTGACATCCATTAAATTGCGATTACGGGTGTAGTGCCAGAGGATCAGCGCCACGATGGCGAGAATGcc  >  2:217460/1‑151 (MQ=255)
                                                                                                                                                    |                                                                                                                                                   
GAAATTGTGATAAAAATCGGCAGGTTGCAGAGCATCCTTGTACTCTACAACCAGTTTATGCCTGTCCTCTTCAGCATCAATGACCTGACTTCCTGTCATGCGACTCTCTCAATAAATACGATAAGTTGATGTATATGCGTTACAGCAAACAGTATTGCGAGAGATAACACCGCGAGGGAGATCAAAAATTTGTCACGGACTACGTGAAATTGGGAAAAATCGCTATTCGTGACATCCATTAAATTGCGATTACGGGTGTAGTGCCAGAGGATCAGCGCCACGATGGCGAGAATGCC  >  NC_000913/3855513‑3855808

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A