Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A2 F50 I2 R1 173 150.8 4954114 96.5% 4780720 150.2

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 4,284,437 (CCA)4→3 coding (464‑466/1650 nt) actP ← acetate transporter

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 4284428 4284430 3 147 [0] [0] 149 actP acetate transporter

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 4284431 =0 (0.000)132 (0.910) 100/280 0.4 100% coding (472/1650 nt) actP acetate transporter
?NC_000913 = 4284427 0 (0.000)coding (476/1650 nt) actP acetate transporter

GATK/CNVnator alignment

N/A