Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A8 F50 I1 R1 163 55.0 1534755 98.6% 1513268 150.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,614,870 A→G S402G (AGT→GGT)  nikA → nickel/heme ABC transporter periplasmic binding protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,614,8700AG98.3% 216.4 / NA 59S402G (AGT→GGT) nikAnickel/heme ABC transporter periplasmic binding protein
Reads supporting (aligned to +/- strand):  ref base A (0/0);  major base G (33/25);  minor base C (1/0);  total (34/25)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

ATCCGCGAGAAAAATGGTCAGCCGCTGCGCATTGAACTTTCGTTCATCGGCACCGATGCGTTAAGCAAATCGATGGCGGAAATCATTCAGGCTGATATGCGCCAGATTGGCGCAGATGTCTCGCTGATTGGCGAAGAAGAGAGCAGTATCTATGCTCGTCAGCGCGACGGTCGTTTTGGCATGATTTTCCACCGCACCTGGGGCGCGCCATATGATCCACACGCCTTCCTCAGTTCAATGCGCGTACCGTCACACGCTGACTTCCAGGCACAGCAAGGATTAGCCGACAA  >  NC_000913/3614726‑3615015
                                                                                                                                                |                                                                                                                                                 
aTCCGCGAGAAAAATGGTCAGCCGCTGCGCATTGAACTTTCGTTCATCGGCACCGATGCGTTAAGCAAATCGATGGCGGAAATCATTCAGGCTGATATGCGCCAGATTGGCGCAGATGTCTCGCTGATTGGCGAAGAAGAGAGCGGTATCt                                                                                                                                             >  1:498602/1‑151 (MQ=255)
aTCCGCGAGAAAAATGGTCAGCCGCTGCGCATTGAACTTTCGTTCATCGGCACCGATGCGTTAAGCAAATCGATGGCGGAAATCATTCAGGCTGATATGCGCCAGATTGGCGCAGATGTCTCGCTGATTGGCGAAGAAGAGAGCGGTATCt                                                                                                                                             >  1:382681/1‑151 (MQ=255)
 tCCGCGAGAAAAATGGTCCGCCGCTGCGCATTGAACTTTCGTTCATCGGCACCGATGCGTTAAGCACATCGATGGCGGAAATCATTCAGGCTGATATGCGCCAGATTGGCGCAGATGTCTCGCTGATTGGCGAAGAAGAGAGCGGTagc                                                                                                                                              >  2:359018/1‑147 (MQ=255)
         aaaaaTGGTCAGCCGCTGCGCATTGAACTTTCGTTCATCGGCACCGATGCGTTAAGCAAATCGATGGCGGAAATCATTCAGGCTGATATGCGCCAGATTGGCGCAGATGTCTCGCTGATTGGCGAAGAAGAGAGCGGTATCTATGCTCGTc                                                                                                                                    >  1:100219/1‑151 (MQ=255)
         aaaaaTGGTCAGCCGCTGCGCATTGAACTTTCGTTCATCGGCACCGATGCGTTAAGCAAATCGATGGCGGAAATCATTCAGGCTGATATGCGCCAGATTGGCGCAGATGTCTCGCTGATTGGCGAAGAAGAGAGCGGTATCTATGCTCGTc                                                                                                                                    >  2:598764/1‑151 (MQ=255)
          aaaaTGGTCAGCCGCTGCGCATTGAACTTTCGTTCATCGGCACCGATGCGTTAAGCAAATCGATGGCGGAAATCATTCAGGCTGATATGCGCCAGATTGGCGCAGATGTCTCGCTGATTGGCGAAGAAGAGAGCGGTATCTATGCTCGTCa                                                                                                                                   <  2:594850/151‑1 (MQ=255)
            aaTGGTCAGACGCTGCGCATTGAACTTTCGTTCATCGGCACCGATGCGTTAAGCAAATCGATGGCGGAAATCATTCAGGCTGATATGCGCCAGATTGGCGCAGATGTCTCGCTGATTGGCGAAGAAGAGAGCGGTATCTATGCTCGTCAgc                                                                                                                                 <  2:40467/151‑1 (MQ=255)
               ggTCAGCCGCTGCGCATTGAACTTTCGTTCATCGGCACCGATGCGTTAAGCAAATCGATGGCGGAAATCATTCAGGCTGATATGCGCCAGATTGGCGCAGATGTCTCGCTGATTGGCGAAGAAGAGAGCGGTATCTATGCTCGTCAGcgcg                                                                                                                              >  1:352982/1‑151 (MQ=255)
                gTCAGCCGCTGCGCATTGAACTTTCGTTCATCGGCACCGATGCGTTAAGCAAATCGATGGCGGAAATCATTCAGGCTGATATGCGCCAGATTGGCGCAGATGTCTCGCTGATTGGCGAAGAAGAGAGCGGTATCTATGCTCGTCAGcgcg                                                                                                                              >  2:193885/1‑150 (MQ=255)
                  cAGCCGCTGCGCATTGAACTTTCGTTCATCGGCACCGATGCGTTAAGCAAATCGATGGCGGAAATCATTCAGGCTGATATGCGCCAGATTGGCGCAGATGTCTCGCTGATTGGCGAAGAAGAGAGCGGTATCTATGCTCGTCAGCGCGACg                                                                                                                           >  1:694856/1‑151 (MQ=255)
                   aGCCGCTGCGCATTGAACTTTCGTTCATCGGCACCGATGCGTTAAGCAAATCGATGGCGGAAATCATTCAGGCTGATATGCGCCAGATTGGCGCAGATGTCTCGCTGATTGGCGAAGAAGAGAGCGGTATCTATGCTCGTCAGCGCGACgg                                                                                                                          >  1:174915/1‑151 (MQ=255)
                         tGCGCATTGAACTTTCGTTCATCGGCACCGATGCGTTAAGCAAATCGATGGCGGAAATCATTCAGGCTGATATGCGCCAGATTGGCGCAGATGTCTCGCTGATTGGCGAAGAAGAGAGCGGTATCTATGCTCGTCAGCGCGACGGTCGttt                                                                                                                    >  2:329049/1‑151 (MQ=255)
                            gcATTGAACTTTCGTTCATCGGCACCGATGCGTTAAGCAAATCGACGGCGGAAATCATTCAGGCTGATATGCGCCAGATTGGCGCAGATGTCTCGCTGATTGGCGAAGAAGAGAGCGGTATCTATGCTCGTCAGCGCGACGGTCGTTTTgg                                                                                                                 >  1:98037/1‑151 (MQ=255)
                                            cATCGGCACCGATGCGTTAAGCAAATCGATGGCGGAAATCATTCAGGCTGATATGCGCCAGATTGGCGCAGATGTCTCGCTGATTGGCGAAGAAGAGAGCGGTATCTATGCTCGTCAGCGCGACGGTCGTTTTGGCATGATTTTCCACCg                                                                                                  <  1:190005/150‑1 (MQ=255)
                                                ggCACCGATGCGTTAAGCAAATCGATGGCGGAAATCATTCAGGCTGATATGCGCCAGATTGGCGCAGATGTCTCGCTGATTTGCGAAGAAGAGAGCGGTATCTATGCTCGTCAGCGCGACGGTCGTTTTGGCATGATTTTCCACCGCACCt                                                                                             <  1:312291/151‑1 (MQ=255)
                                                    ccGATGCGTTAAGCAAATCGATGGCGGAAATCATTCAGGCTGATATGCGCCAGATTGGCGCAGATGTCTCGCTGATTGGCGAAGAAGAGAGCGGTATCTATGCTCGTCAGCGCGACGGTCGTTTTGGCATGATTTTCCACCGCACCTgggg                                                                                         >  1:346683/1‑151 (MQ=255)
                                                    ccGATGCGTTAAGCAAATCGATGGCGGAAATCATTCAGGCTGATATGCGCCAGATTGGCGCAGATGTCTCGCTGATTGGCGAAGAAGAGAGCGGTATCTATGCTCGTCAGCGCGACGGTCGTTTTGGCATGATTTTCCACCGCACCTgggg                                                                                         >  2:596646/1‑151 (MQ=255)
                                                       aTGCGTTAAGCAAATCGATGGCGGAAATCATTCAGGCTGATATGCGCCAGATTGGCGCAGATGTCTCGCTGATTGGCGAAGAAGAGAGCGGTATCTATGCTCGTCAGCGCGACGGTCGTTTTGGCATGATTTTCCACCGCACCTGGGgcgc                                                                                      <  1:707716/151‑1 (MQ=255)
                                                        tGCGTTAAGCAAATCGATGGCGGAAATCATTCAGGCTGATATGCGCCAGATTGGCGCAGATGTCTCGCTGATTGGCGAAGAAGAGAGCGGTATCTATGCTCGTCAGCGCGACGGTCGTTTTGGCATGATTTTCCACCGCACCTGGGgcgcg                                                                                     >  1:253809/1‑151 (MQ=255)
                                                           gTTAAGCAAATCGATGGCGGAAATCATTCAGGCTGATATGCGCCAGATTGGCGCAGATGTCGCGCTGATTGGCGAAGAAGAGAGCGGTATCTATGCTCGTCAGCGCGACGGTCGTTTTGGCATGATTTGCCACCGCACCTGGGGCGCGCCa                                                                                  <  2:23815/151‑1 (MQ=255)
                                                              aaGCAAATCGATGGCGGAAATCATTCAGGCTGATATGCGCCAGATTGGCGCAGATGTCTCGCTGATTGGCGAAGAAGAGAGCGGTATCTATGCTCGTCAGCGCGACGGTCGTTTTGGCATGATTTTCCACCGCACCTGGGGCGCGCCatat                                                                               >  2:292234/1‑151 (MQ=255)
                                                               aGCAAATCGATGGCGGAAATCATTCAGGCTGATATGCGCCAGATTGGCGCAGATGTCTCGCTGATTGGCGAAGAAGAGAGCGGTATCTATGCTCGTCAGCGCGACGGTCGTTTTGGCATGATTTTCCACCGCACCTGGGGCGCGCCATATg                                                                              >  2:135812/1‑151 (MQ=255)
                                                                    aTCGATGGCGGAAATCATTCAGGCTGATATGCGCCAGATTGGCGCAGATGTCTCGCTGATTGGCGAAGAAGAGAGCGGTATCTATGCTCGTCAGCGCGACGGTCGTTTTGGCATGATTTTCCACCGCACCTGGGGCGCGCCATATGATCca                                                                         <  1:700918/151‑1 (MQ=255)
                                                                      cGATGGCGGAAATCATTCAGGCTGATATGCGCCAGATTGGCGCAGATGTCTCGCTGATTGGCGAAGAAGAGAGCGGTATCTATGCTCGTCAGCGCGACGGTCGTTTTGGCATGATTTTCCACCGCACCTGGGGCGCGCCATATGATCcac                                                                        >  2:29270/1‑150 (MQ=255)
                                                                         tGGCGGAAATCATTCAGGCTGATATGCGCCAGATTGGCGCAGATGTCCCGCTGCTTGGCGAAGAAAAGAGCCGCCCCTATGCTCGTCAGCGCCACGGTCGTTTTGGCATGATTTTCCACCGCACCTGGCCCGCGCCATATGATCCACACg                                                                     >  2:528329/1‑150 (MQ=255)
                                                                           gCGGAAATCATTCAGGCTGATATGCGCCAGATTGGCGCAGATGTCTCGCTGATTGGCGAAGAAGAGAGCGGTATCTATGCTCGTCAGCGCGACGGTCGTTTTGGCATGATTTTCCACCGCACCTGGGGCGCGCCATATGATCCACACGCCt                                                                  >  2:597803/1‑151 (MQ=255)
                                                                            cGGAAATCATTCAGGCTGATATGCGCCAGATTGGCGCAGATGTCTCGCTGATTGGCGAAGAAGAGAGCGGTATCTATGCTCGTCAGCGCGACGGTCGTTTTGGCATGATTTTCCACCGCACCTGGGGCGCGCCATATGATCCACACGCCtt                                                                 <  2:538910/151‑1 (MQ=255)
                                                                            cGGAAATCATTCAGGCTGATATGCGCCAGATTGGCGCAGATGTCTCGCTGATTGGCGAAGAAGAGAGCGGTATCTATGCTCGTCAGCGCGACGGTCGTTTTGGCATGATTTTCCACCGCACCTGGGGCGCGCCATATGATCCACACGCCtt                                                                 <  1:286427/151‑1 (MQ=255)
                                                                              gAAATCATTCAGGCTGATATGCGCCAGATTGGCGCAGATGTCTCGCTGATTGGCGAAGAAGAGAGCGGTATCTATGCTCGTCAGCGCGACGGTCGTTTTGGCATGATTTTCCACCGCACCTGGGGCGCGCCATATGATCCACACGCCTTcc                                                               <  2:181810/151‑1 (MQ=255)
                                                                               aaaTCATTCAGGCTGATATGCGCCAGATTGGCGCAGATGTCTCGCTGATTGGCGAAGAAGAGAGCGGTATCTATGCTCGTCAGCGCGACGGTCGTTTTGGCATGATTTTCCACCGCACCTGGGGCGCGCCATATGATCCACACGCCTTCCt                                                              >  1:123019/1‑151 (MQ=255)
                                                                                aaTCATTCAGGCTGATATGCGCCAGATTGGCGCAGATGTCTCGCTGATTGGCGAAGAAGAGAGCGGTATCTATGCTCGTCAGCGCGACGGTCGTTTTGGCATGATTTTCCACCGCACCTGGGGCGCGCCATATGATCCACACGCCTTCCTc                                                             >  1:251506/1‑151 (MQ=255)
                                                                                aaTCATTCAGGCTGATATGCGCCAGATTGGCGCAGATGTCTCGCTGATTGGCGAAGAAGAGAGCGGTATCTATGCTCGTCAGCGCGACGGTCGTTTTGGCATGATTTTCCACCGCACCTGGGGCGCGCCATATGATCCACACGCCTTCCTc                                                             <  1:433700/151‑1 (MQ=255)
                                                                                 aTCATTCAGGCTGATATGCGCCAGATTGGCGCAGATGTCTCGCTGATTGGCGAAGAAGAGAGCGGTATCTATGCTCGTCAGCGCGACGGTCGTTTTGGCATGATTTTCCACCGCACCTGGGGCGCGCCATATGATCCACACGCCTTCCTCa                                                            <  1:29271/151‑1 (MQ=255)
                                                                                   cATTCAGGCTGATATGCGCCAGATTGGCGCAGATGTCTCGCTGATTGGCGAAGAAGAGAGCGGTATCTATGCTCGTCAGCGCGACGGTCGTTTTGGCATGATTTTCCACCGCACCTGGGGCGCGCCATATGATCCACACGCCTTCCTCAg                                                           <  1:254891/150‑1 (MQ=255)
                                                                                         ggCTGATATGCGCCAGATTGGCGCAGATGTCTCGCTGATTGGCGAAGAAGAGAGCGGTATCTATGCTCGTCAGCGCGACGGTCGTTTTGGCATGATTTTCCACCGCACCTGGGGCGCGCCATATGATCCACACGCCTTCCTCAGTTCAATg                                                    >  2:188324/1‑151 (MQ=255)
                                                                                                        gATTGGCGCAGATGTCTCGCTGATTGGCGAAGAAGAGAGCGGTATCTATGCTCGTCAGCGCGACGGTCGTTTTGGCATGATTTTCCACCGCACCTGGGGCGCGCCATATGATCCACACGCCTTCCTCAGTTCAATGCGCGTACCGTCacac                                     <  2:328748/151‑1 (MQ=255)
                                                                                                         aTTGGCGCAGATGTCTCGCTGATTGGCGAAGAAGAGAGCGGTATCTATGCTCGTCAGCGCGACGGTCGTTTTGGCATGATTTTCCACCGCACCTGGGGCGCGCCATATGATCCACACGCCTTCCTCAGTTCAATGCGCGTACCGTCACACg                                    >  1:264630/1‑151 (MQ=255)
                                                                                                         aTTGGCGCAGATGTCTCGCTGATTGGCGAAGAAGAGAGCGGTATCTATGCTCGTCAGCGCGACGGTCGTTTTGGCATGATTTTCCACCGCACCTGGGGCGCGCCATATGATCCACACGCCTTCCTCAGTTCAATGCGCGTACCGTCACACg                                    <  1:493960/151‑1 (MQ=255)
                                                                                                            ggCGCAGATGTCTCGCTGATTGGCGAAGAAGAGAGCGGTATCTATGCTCGTCAGCGCGACGGTCGTTTTGGCATGATTTTCCACCGCACCTGGGGCGCGCCATATGATCCACACGCCTTCCTCAGTTCAATGCGCGTACCGTCACACGCt                                  <  2:155960/150‑1 (MQ=255)
                                                                                                            ggCGCAGATGTCTCGCTGATTGGCGAAGAAGAGAGCGGTATCTATGCTCGTCAGCGCGACGGTCGTTTTGGCATGATTTTCCACCGCACCTGGGGCGCGCCATATGATCCACACGCCTTCCTCAGTTCAATGCGCGTACCGTCACACGCTg                                 <  1:76408/151‑1 (MQ=255)
                                                                                                            ggCGCAGATGTCTCGCTGATTGGCGAAGAAGAGAGCGGTATCTATGCTCGTCAGCGCGACGGTCGTTTTGGCATGATTTTCCACCGCACCTGGGGCGCGCCATATGATCCACACGCCTTCCTCAGTTCAATGCGCGTACCGTCACACGCTg                                 >  2:449871/1‑151 (MQ=255)
                                                                                                             gcgcAGATGTCTCGCTGATTGGCGAAGAAGAGAGCGGTATCTATGCTCGTCAGCGCGACGGTCGTTTTGGCATGATTTTCCACCGCACCTGGGGCGCGCCATATGATCCACACGCCTTCCTCAGTTCAATGCGCGTACCGTCACACGCTGa                                <  2:251495/151‑1 (MQ=255)
                                                                                                              cgcAGATGTCTCGCTGATTGGCGAAGAAGAGAGCGGTATCTATGCTCGTCAGCGCGACGGTCGTTTTGGCATGATTTTCCACCGCACCTGGGGCGCGCCATATGATCCACACGCCTTCCTCAGTTCAATGCGCGTACCGTCACACGCTGAc                               >  1:367845/1‑151 (MQ=255)
                                                                                                                cAGATGTCTCGCTGATTGGCGAAGAAGAGAGCGGTATCTATGCTCGTCAGCGCGACGGTCGTTTTGGCATGATTTTCCACCGCACCTGGGGCGCGCCATATGATCCACACGCCTTCCTCAGTTCAATGCGCGTACCGTCACACGCTGACtt                             >  1:632883/1‑151 (MQ=255)
                                                                                                                cAGATGTCTCGCTGATTGGCGAAGAAGAGAGCGGTATCTATGCTCGTCAGCGCGACGGTCGTTTTGGCATGATTTTCCACCGCACCTGGGGCGCGCCATATGATCCACACGCCTTCCTCAGTTCAATGCGCGTACCGTCACACGCTGACtt                             <  2:763946/151‑1 (MQ=255)
                                                                                                                cAGATGTCTCGCTGATTGGCGAAGAAGAGAGCGGTATCTATGCTCGTCAGCGCGACGGTCGTTTTGGCATGATTTTCCACCGCACCTGGGGCGCGCCATATGATCCACACGCCTTCCTCAGTTCAATGCGCGTACCGTCACACGCTGACtt                             >  1:183756/1‑151 (MQ=255)
                                                                                                                   aTGTCTCGCTGATTGGCGAAGAAGAGAGCGGTATCTATGCTCGTCAGCGCGACGGTCGTTTTGGCATGATTTTCCACCGCACCTGGGGCGCGCCATATGATCCACACGCCTTCCTCAGTTCAATGCGCGTACCGTCACACGCTGACTTCCa                          <  2:696361/151‑1 (MQ=255)
                                                                                                                   aTGTCTCGCTGATTGGCGAAGAAGAGAGCGGTATCTATGCTCGTCAGCGCGACGGTCGTTTTGGCATGATTTTCCACCGCACCTGGGGCGCGCCATATGATCCACACGCCTTCCTCAGTTCAATGCGCGTACCGTCACACGCTGACTTCCa                          <  2:651420/151‑1 (MQ=255)
                                                                                                                         cGCTGATTGGCGAAGAAGAGAGCGGTATCTATGCTCGTCAGCGCGACGGTCGTTTTGGCATGATTTTCCACCGCACCTGGGGCGCGCCATATGATCCACACGCCTTCCTCAGTTCAATGCGCGTACCGTCACACGCTGACTTCCAGGcac                     >  2:153800/1‑150 (MQ=255)
                                                                                                                         cGCTGATTGGCGAAGAAGAGAGCGGTATCTATGCTCGTCAGCGCGACGGTCGTTTTGGCATGATTTTCCACCGCACCTGGGGCGCGCCATATGATCCACACGCCTTCCTCAGTTCAATGCGCGTACCGTCACACGCTGACTTCCAGGcac                     >  1:2989/1‑150 (MQ=255)
                                                                                                                          gCTGATTGGCGAAGAAGAGAGCGGTATCTATGCTCGTCAGCGCGACGGTCGTTTTGGCATGATTTTCCACCGCACCTGGGGCGCGCCATATGATCCACACGCCTTCCTCAGTTCAATGCGCGTACCGTCACACGCTGACTTCCAGGcac                     >  2:388392/1‑149 (MQ=255)
                                                                                                                           cTGAGTGGCGAAGAAGAGAGCGGTATCTATGCTCGTCAGCGCGACGGTCGTTTTGGCATGATTTTCCACCGCACCTGGGGCGCGCCATATGATCCACACGCCTTCCTCAGTTCAATGCGCGTACCGTCACACGCTGACTTCCAGGCACAGc                  >  2:406792/1‑151 (MQ=255)
                                                                                                                              aTTGGCGAAGAAGAGAGCGGTATCTATGCTCGTCAGCGCGACGGTCGTTTTGGCATGATTTTCCACCGCACCTGGGGCGCGCCATATGATCCACACGCCTTCCTCAGTTCAATGCGCGTACCGTCACACGCTGACTTCCAGGCACAGCa                 >  2:666965/1‑149 (MQ=255)
                                                                                                                                tGGCGAAGAAGAGAGCGGTATCTATGCTCGTCAGCGCGACGGTCGTTTTGGCATGATTTTCCACCGCACCTGGGGCGCGCCATATGATCCACACGCCTTCCTCAGTTCAATGCGCGTACCGTCACACGCTGACTTCCAGGCACAGCAAgg              <  1:341036/150‑1 (MQ=255)
                                                                                                                                 ggCGAAGAAGAGAGCGGTATCTATGCTCGTCAGCGCGACGGTCGTTTTGGCATGATTTTCCACCGCACCTGGGGCGCGCCATATGATCCACACGCCTTCCTCAGTTCAATGCGCGTACCGTCACACGCTGACTTCCAGGCACAGCAAGGAt            <  1:598800/151‑1 (MQ=255)
                                                                                                                                 ggCGAAGAAGAGAGCGGAATCTATGCTCGTCAGCGCGACGGTCGTTTTGGCAGGATTTTCCACCGCACCTGGGGCGCGCCATATGATCCACACGCCTTCCTCAGTTCAATGCGCGTACCGTCACACGCTGACTTCCAGGCACAGCAAGGAt            >  2:74410/1‑151 (MQ=255)
                                                                                                                                           agagCGGTATCTATGCTCGTCAGCGCGACGGTCGTTTTGGCATGATTTTCCACCGCACCTGGGGCGCGCCATATGATCCACACGCCTTCCTCAGTTCAATGCGCGTACCGTCACACGCTGACTTCCAGGCACAGCAAGGATTAGCCGACaa  <  2:263463/151‑1 (MQ=255)
                                                                                                                                            gagCGGTATCTATGCTCGTCAGCGCGACGGTCGTTTTGGCATGATTTTCCACCGCACCTGGGGCGCGCCATATGATCCACACGCCTTCCTCAGTTCAATGCGCGTACCGTCACACGCTGACTTCCAGGCACAGCAAGGATTAGCCg      <  1:79924/146‑1 (MQ=255)
                                                                                                                                            gagCGGTATCTATGCTCGTCAGCGCGACGGTCGTTTTGGCATGATTTTCCACCGCACCTGGGGCGCGCCATATGATCCACACGCCTTCCTCAGTTCAATGCGCGTACCGTCACACGCTGACTTCCAGGCACAGCAAGGATTAGCCg      >  2:79923/1‑146 (MQ=255)
                                                                                                                                                |                                                                                                                                                 
ATCCGCGAGAAAAATGGTCAGCCGCTGCGCATTGAACTTTCGTTCATCGGCACCGATGCGTTAAGCAAATCGATGGCGGAAATCATTCAGGCTGATATGCGCCAGATTGGCGCAGATGTCTCGCTGATTGGCGAAGAAGAGAGCAGTATCTATGCTCGTCAGCGCGACGGTCGTTTTGGCATGATTTTCCACCGCACCTGGGGCGCGCCATATGATCCACACGCCTTCCTCAGTTCAATGCGCGTACCGTCACACGCTGACTTCCAGGCACAGCAAGGATTAGCCGACAA  >  NC_000913/3614726‑3615015

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A