Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F50 I1 R1 157 93.7 2947622 98.1% 2891617 150.3

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,097,864 A→G intergenic (‑212/‑22) serX ← / → ghrA tRNA‑Ser/glyoxylate/hydroxypyruvate reductase A

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,097,8640AG99.0% 352.5 / ‑3.8 99intergenic (‑212/‑22)serX/ghrAtRNA‑Ser/glyoxylate/hydroxypyruvate reductase A
Reads supporting (aligned to +/- strand):  ref base A (1/0);  new base G (53/45);  total (54/45)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.60e-01

Only 100 of 101 total aligned reads displayed.

AAACTTTTTGAAAAAATCGCGCGTTTATTCAAACTTCAATCAATGTGTGGTTTTAATAAGCGAAATCTGCTTTTTTTGCCACCGACCACGGATTTGTTATGCTGGTGGCCTTTGTAGATCATAACGATAAGTGCGAATAAATTTCGCACAACGCTTTTCGGGAGTCAGTATGGATATCATCTTTTATCACCCAACGTTCGATACCCAATGGTGGATTGAGGCACTGCGCAAAGCTATTCCTCAGGCAAGAGTCAGAGCATGGAAAAGCGGAGATAATGACTCTGCTGATTATGCT  >  NC_000913/1097717‑1098011
                                                                                                                                                   |                                                                                                                                                   
aaaCTTTTTGAAAAAATCGCGCGTTTATTCAAACTTCAATCAATGTGTGGTTTTAATAAGCGAAATCTGCTTTTTTTGCCACCGACCACGGATTTGTTATGCTGGTGGCCTTTGTAGATCATAACGATAAGTGCGAATAAATTTCGcgca                                                                                                                                                   >  1:840572/1‑150 (MQ=255)
   cTTTTTGAAAAAATCGCGCGTTTATTCAAACTTCAATCAATGTGTGGTTTTAATAAGCGAAATCTGCTTTTTTTGCCACCGACCACGGATTTGTTATGCTGGTGGCCTTTGTAGATCATAACGATAAGTGCGAATAAATTTCGCGCAACGc                                                                                                                                               >  2:1156068/1‑151 (MQ=255)
    tttttGAAAAAATCGCGCGTTTATTCAAACTTCAATCAATGTGTGGTTTTAATAAGCGAAATCTGCTTTTTTTGCCACCGACCACGGATTTGTTATGCTGGTGGCCTTTGTAGATCATAACGATAAGTGCGAATAAATTTCGCGCAACGCt                                                                                                                                              >  1:117979/1‑151 (MQ=255)
       ttGAAAAAATCGCGCGTTTATTCAAACTTCAATCAATGTGTGGTTTTAATAAGCGAAATCTGCTTTTTTTGCCACCGACCACGGATTTGTTATGCTGGTGGCCTTTGTAGATCATAACGATAAGTGCGAATAAATTTCGCGCAACGCttt                                                                                                                                            <  2:505817/150‑1 (MQ=255)
        tGAAAAAATCGCGCGTTTATTCAAACTTCAATCAATGTGTGGTTTTAATAAGCGAAATCTGCTTTTTTTGCCACCGACCACGGATTTGTTATGCTGGTGGCCTTTGTAGATCATAACGATAAGTGCGAATAAATTTCGCGCAACGCTTTTc                                                                                                                                          >  1:1047780/1‑151 (MQ=255)
         gAAAAAATCGCGCGTTTATTCAAACTTCAATCAATGTGTGGTTTTAATAAGCGAAATCTGCTTTTTTTGCCACCGACCACGGATTTGTTATGCTGGTGGCCTTTGTAGATCATAACGATAAGTGCGAATAAATTTCGCGCAACGCTTTTCg                                                                                                                                         <  2:276705/151‑1 (MQ=255)
          aaaaaaTCGCGCGTTTATTCAAACTTCAATCAATGTGTGGTTTTAATAAGCGAAATCTGCTTTTTTTGCCACCGACCACGGATTTGTTATGCTGGTGGCCTTTGTAGATCATAACGATAAGTGCGAATAAATTTCGCGCAACGCTTTTCgg                                                                                                                                        >  1:281275/1‑151 (MQ=255)
           aaaaaTCGCGCGTTTATTCAAACTTCAATCAATGTGTGGTTTTAATAAGCGAAATCTGCTTTTTTTGCCACCGACCACGGATTTGTTATGCTGGTGGCCTTTGTAGATCATAACGATAAGTGCGAATAAATTTCGCGCAACGCTTTTCggg                                                                                                                                       >  2:171305/1‑151 (MQ=255)
            aaaaTCGCGCGTTTATTCAAACTTCAATCAATGTGTGGTTTTAATAAGCGAAATCTGCTTTTTTTGCCACCGACCACGGATTTGTTATGCTGGTGGCCTTTGTAGATCATAACGATAAGTGCGAATAAATTTCGCGCAACGCTTTTCggg                                                                                                                                       >  2:1334676/1‑150 (MQ=255)
            aaaaTCGCGCGTTTATTCAAACTTCAATCAATGTGTGGTTTTAATAAGCGAAATCTGCTTTTTTTGCCACCGACCACGGATTTGTTATGCTGGTGGCCTTTGTAGATCATAACGATAAGTGCGAATAAATTTCGCGCAACGCTTTTCGGGa                                                                                                                                      <  1:932754/151‑1 (MQ=255)
            aaaaTCGCGCGTTTATTCAAACTTCAATCAATGTGTGGTTTTAATAAGCGAAATCTGCTTTTTTTGCCACCGACCACGGATTTGTTATGCTGGCGGCCTTTGTAGATCATAACGATAAGTGCGAATAAATTTCGCGCAACGCTTTTCGGGa                                                                                                                                      <  2:730146/151‑1 (MQ=255)
             aaaTCGCGCGTTTATTCAAACTTCAATCAATGTGTGGTTTTAATAAGCGAAATCTGCTTTTTTTGCCACCGACCACGGATTTGTTATGCTGGTGGCCTTTGTAGATCATAACGATAAGTGCGAATAAATTTCGCGCAACGCTTTTCggg                                                                                                                                       >  1:975374/1‑149 (MQ=255)
                tCGCGCGTTTATTCAAACTTCAATCAATGTGTGGTTTTAATAAGCGAAATCTGCTTTTTTTGCCACCGACCACGGATTTGTTATGCTGGTGGCCTTTGTAGATCATAACGATAAGTGCGAATAAATTTCGCGCAACGCTTTTCGGGAGTc                                                                                                                                   >  2:1419894/1‑150 (MQ=255)
                 cgcgcgTTTATTCAAACTTCAATCAATGTGTGGTTTTAATAAGCGAAATCTGCTTTTTTTGCCACCGACCACGGATTTGTTATGCTGGTGGCCTTTGTAGATCATAACGATAAGTGCGAATAAATTTCGCGCAACGCTTTTCGGGAGTc                                                                                                                                   >  2:1160780/1‑149 (MQ=255)
                   cgcgTTTATTCAAACTTCAATCAATGTGTGGTTTTAATAAGCGAAATCTGCTTTTTTTGCCACCGACCACGGATTTGTTATGCTGGTGGCCTTTGTAGATCATAACGATAAGTGCGAATAAATTTCGCGCAACGCTTTTCGGGAGTCAGTa                                                                                                                               <  1:877545/151‑1 (MQ=255)
                      gTTTATTCAAACTTCAATCAATGTGTGGTTTTAATAAGCGAAATCTGCTTTTTTTGCCACCGACCACGGATTTGTTATGCTGGTGGCCTTTGTAGATCATAACGATAAGTGCGAATAAATTTCGCGCAACGCTTTTCGGGAGTCAGTATgg                                                                                                                            <  2:854204/151‑1 (MQ=255)
                      gTTTATTCAAACTTCAATCAATGTGTGGTTTTAATAAGCGAAATCTGCTTTTTTTGCCACCGACCACGGATTTGTTATGCTGGTGGCCTTTGTAGATCATAACGATAAGTGCGAATAAATTTCGCGCAACGCTTTTCGGGAGTCAGTATgg                                                                                                                            <  1:1141454/151‑1 (MQ=255)
                      gTTTATTCAAACTTCAATCAATGTGTGGTTTTAATAAGCGAAATCTGCTTTTTTTGCCACCGACCACGGATTTGTTATGCTGGTGGCCTTTGTAGATCATAACGATAAGTGCGAATAAATTTCGCGCAACGCTTTTCGGGAGTCAGTATgg                                                                                                                            <  1:1102565/151‑1 (MQ=255)
                         tATTCAAACTTCAATCAATGTGTGGTTTTAATAAGCGAAATCTGCTTTTTTTGCCACCGACCACGGATTTGTTATGCTGGTGGCCTTTGTAGATCATAACGATAAGTGCGAATAAATTTCGCGCAACGCTTTTCGGGAGTCAGTATGGat                                                                                                                          <  1:417781/150‑1 (MQ=255)
                         tATTCAAACTTCAATCAATGTGTGGTTTTAATAAGCGAAATCTGCTTTTTTTGCCACCGACCACGGATTTGTTATGCTGGTGGCCTTTGTAGATCATAACGATAAGTGCGAATAAATTTCGCGCAACGCTTTTCGGGAGTCAGTATGGat                                                                                                                          <  1:675434/150‑1 (MQ=255)
                         tATTCAAACTTCAATCAATGTGTGGTTTTAATAAGCGAAATCTGCTTTTTTTGCCACCGACCACGGATTTGTTATGCTGGTGGCCTTTGTAGATCATAACGATAAGTGCGAATAAATTTCGCGCAACGCTTTTCGGGAGTCAGTATGGat                                                                                                                          <  1:532656/150‑1 (MQ=255)
                          aTTCAAACTTCAATCAATGTGTGGTTTTAATAAGCGAAATCTGCTTTTTTTGCCACCGACCACGGATTTGTTATGCTGGTGGCCTTTGTAGATCATAACGATAAGTGCGAATAAATTTCGCGCAACGCTTTTCGGGAGTCAGTATGGatat                                                                                                                        <  1:926128/151‑1 (MQ=255)
                             cAAACTTCAATCAATGTGTGGTTTTAATAAGCGAAATCTGCTTTTTTTGCCACCGACCACGGATTTGTTATGCTGGTGGCCTTTGTAGATCATAACGATAAGTGCGAATAAATTTCGCGCAACGCTTTTCGGGAGTCAGTATGGATatcat                                                                                                                     <  1:464211/151‑1 (MQ=255)
                                 cTTCAATCAATGTGTGGTTTTAATAAGCGAAATCTGCTTTTTTTGCCACCGACCACGGATTTGTTATGCTGGTGGCCTTTGTAGATCATAACGATAAGTGCGAATAAATTTCGCGCAACGCTTTTCGGGAGTCAGTATGGATATCATCttt                                                                                                                 >  1:378309/1‑151 (MQ=255)
                                 cTTCAATCAATGTGTGGTTTTAATAAGCGAAATCTGCTTTTTTTGCCACCGACCACGGATTTGTTATGCTGGTGGCCTTTGTAGATCATAACGATAAGTGCGAATAAATTTCGCGCAACGCTTTTCGGGAGTCAGTATGGATATCATCttt                                                                                                                 >  2:1063730/1‑151 (MQ=255)
                                  ttCAATCAATGTGTGGTTTTAATAAGCGAAATCTGCTTTTTTTGCCACCGACCACGGATTTGTTATGCTGGTGGCCTTTGTAGATCATAACGATAAGTGCGAATAAATTTCGCGCAACGCTTTTCGGGAGTCAGTATGGATATCATCtttt                                                                                                                >  1:1053876/1‑151 (MQ=255)
                                     aatcaatGTGTGGTTTTAATAAGCGAAATCTGCTTTTTTTGCCACCGACCACGGATTTGTTATGCTGGTGGCCTTTGTAGATCATAACGATAAGTGCGAATAAATTTCGCGCAACGCTTTTCGGGAGTCAGTATGGATATCATCTTTTATc                                                                                                             >  2:1418525/1‑151 (MQ=255)
                                      atcaatGTGTGGTTTTAATAAGCGAAATCTGCTTTTTTTGCCACCGACCACGGATTTGTTATGCTGGTGGCCTTTGTAGATCATAACGATAAGTGCGAATAAATTTCGCGCAACGCTTTTCGGGAGTCAGTATGGATATCATCTTTTATc                                                                                                             >  1:677390/1‑150 (MQ=255)
                                      atcaatGTGTGGTTTTAATAAGCGAAATCTGCTTTTTTTGCCACCGACCACGGATTTGTTATGCTGGTGGCCTTTGTAGATCATAACGATAAGTGCGAATAAATTTCGCGCAACGCTTTTCGGGAGTCAGTATGGATATCATCTTTTATc                                                                                                             >  2:54122/1‑150 (MQ=255)
                                      atcaatGTGTGGTTTTAATAAGCGAAATCTGCTTTTTTTGCCACCGACCACGGATTTGTTATGCTGGTGGCCTTTGTAGATCATAACGATAAGTGCGAATAAATTTCGCGCAACGCTTTTCGGGAGTCAGTATGGATATCATCTTTTATCa                                                                                                            <  2:19536/151‑1 (MQ=255)
                                       tcaatGTGTGGTTTTAATAAGCGAAATCTGCTTTTTTTGCCACCGACCACGGATTTGTTATGCTGGTGGCCTTTGTAGATCATAACGATAAGTGCGAATAAATTTCGCGCAACGCTTTTCGGGAGTCAGTATGGATATCATCTTTTATCAc                                                                                                           >  1:103852/1‑151 (MQ=255)
                                         aatGTGTGGTTTTAATAAGCGAAATCTGCTTTTTTTGCCACCGACCACGGATTTGTTATGCTGGTGGCCTTTGTAGATCATAACGATAAGTGCGAATAAATTTCGCGCAACGCTTTTCGGGAGTCAGTATGGATATCATCTTTTATCAccc                                                                                                         >  1:1401776/1‑151 (MQ=255)
                                         aatGTGTGGTTTTAATAAGCGAAATCTGCTTTTTTTGCCACCGACCACGGATTTGTTATGCTGGTGGCCTTTGTAGATCATAACGATAAGTGCGAATAAATTTCGCGCAACGCTTTTCGGGAGTCAGTATGGATATCATCTTTTATCAccc                                                                                                         >  2:1034297/1‑151 (MQ=255)
                                         aatGTGTGGTTTTAATAAGCGAAATCTGCTTTTTTTGCCACCGACCACGGATTTGTTATGCTGGTGGCCTTTGTAGATCATAACGATAAGTGCGAATAAATTTCGCGCAACGCTTTTCGGGAGTCAGTATGGATATCATCTTTTATCAccc                                                                                                         >  2:133238/1‑151 (MQ=255)
                                          atGTGTGGTTTTAATAAGCGAAATCTGCTTTTTTTGCCACCGACCACGGATTTGTTATGCTGGTGGCCTTTGTAGATCATAACGATAAGTGCGAATAAATTTCGCGCAACGCTTTTCGGGAGTCAGTATGGATATCATCTTTTATCAccc                                                                                                         >  1:1262356/1‑150 (MQ=255)
                                              gtgGTTTTAATAAGCGAAATCTGCTTTTTTTGCCACCGACCACGGATTTGTTATGCTGGTGGCCTTTGTAGATCATAACGATAAGTGCGAATAAATTTCGCGCAACGCTTTTCGGGAGTCAGTATGGATATCATCTTTTATCACCCAACGt                                                                                                    >  1:717874/1‑151 (MQ=255)
                                              gtgGTTTTAATAAGCGAAATCTGCTTTTTTTGCCACCGACCACGGATTTGTTATGCTGGTGGCCTTTGTAGATCATAACGATAAGTGCGAATAAATTTCGCGCAACGCTTTTCGGGAGTCAGTATGGATATCATCTTTTATCACCCAACGt                                                                                                    <  1:725773/151‑1 (MQ=255)
                                               tgGTTTTAATAAGCGAAATCTGCTTTTTTTGCCACCGACCACGGATTTGTTATGCTGGTGGCCTTTGTAGATCATAACGATAAGTGCGAATAAATTTCGCGCAACGCTTTTCGGGAGTCAGTATGGATATCATCTTTTATCACCCAACGtt                                                                                                   >  1:942388/1‑151 (MQ=255)
                                                ggTTTTAATAAGCGAAATCTGCTTTTTTTGCCACCGACCACGGATTTGTTATGCTGGTGGCCTTTGTAGATCATAACGATAAGTGCGAATAAATTTCGCGCAACGCTTTTCGGGAGTCAGTATGGATATCATCTTTTATCACCCAACGtt                                                                                                   <  1:1346092/150‑1 (MQ=255)
                                                ggTTTTAATAAGCGAAATCTGCTTTTTTTGCCACCGACCACGGATTTGTTATGCTGGTGGCCTTTGTAGATCATAACGATAAGTGCGAATAAATTTCGCGCAACGCTTTTCGGGAGTCAGTATGGATATCATCTTTTATCACCCAACGTTc                                                                                                  >  2:654339/1‑151 (MQ=255)
                                                ggTTTTAATAAGCGAAATCTGCTTTTTTTGCCACCGACCACGGATTTGTTATGCTGGTGGCCTTTGTAGATCATAACGATAAGTGCGAATAAATTTCGCGCAACGCTTTTCGGGAGTCAGTATGGATATCATCTTTTATCACCCAACGTTc                                                                                                  <  2:860482/151‑1 (MQ=255)
                                                 gTTTTAATAAGCGAAATCTGCTTTTTTTGCCACCGACCACGGATTTGTTATGCTGGTGGCCTTTGTAGATCATAACGATAAGTGCGAATAAATTTCGCGCAACGCTTTTCGGGAGTCAGTATGGATATCATCTTTTATCACCCAACGTTCg                                                                                                 <  2:315180/151‑1 (MQ=255)
                                                   tttAATAAGCGAAATCTGCTTTTTTTGCCACCGACCACGGATTTGTTATGCTGGTGGCCTTTGTAGATCATAACGATAAGTGCGAATAAATTTCGCGCAACGCTTTTCGGGAGTCAGTATGGATATCATCTTTTATCACCCAACGTTCGa                                                                                                <  2:1106714/150‑1 (MQ=255)
                                                    ttAATAAGCGAAATCTGCTTTTTTTGCCACCGACCACGGATTTGTTATGCTGGTGGCCTTTGTAGATCATAACGATAAGTGCGAATAAATTTCGCGCAACGCTTTTCGGGAGTCAGTATGGATATCATCTTTTATCACCCAACGTTCGAt                                                                                               <  2:921498/150‑1 (MQ=255)
                                                       ataaGCGAAATCTGCTTTTTTTGCCACCGACCACGGATTTGTTATGCTGGTGGCCTTTGTAGATCATAACGATAAGTGCGAATAAATTTCGCGCAACGCTTTTCGGGAGTCAGTATGGATATCATCTTTTATCACCCAACGTTCGATAccc                                                                                           >  2:133835/1‑151 (MQ=255)
                                                         aaGCGAAATCTGCTTTTTTTGCCACCGACCACGGATTTGTTATGCTGGTGGCCTTTGTAGATCATAACGATAAGTGCGAATAAATTTCGCGCAACGCTTTTCGGGAGTCAGTATGGATATCATCTTTTATCACCCAACGTTCGATACCCa                                                                                          >  1:659523/1‑150 (MQ=255)
                                                                aTCTGCTTTTTTTGCCACCGACCACGGATTTGTTATGCTGGTGGCCTTTGTAGATCATAACGATAAGTGCGAATAAATTTCGCGCAACGCTTTTCGGGAGTCAGTATGGATATCATCTTTTATCACCCAACGTTCGATACCCAAtggtgg                                                                                   >  2:790980/1‑150 (MQ=255)
                                                                   tGCTTTTTTTGCCACCGACCACGGATTTGTTATGCTGGTGGCCTTTGTAGATCATAACGATAAGTGCGAATAAATTTCGCGCAACGCTTTTCGGGAGTCAGTATGGATATCATCTTTTATCACCCAACGTTCGATACCCAATGGTGGATTg                                                                               >  1:748885/1‑151 (MQ=255)
                                                                    gCTTTTTTTGCCACCGACCACGGATTTGTTATGCTGGTGGCCTTTGTAGATCATAACGATAAGTGCGAATAAATTTCGCGCAACGCTTTTCGGGAGTCAGTATGGATATCATCTTTTATCACCCAACGTTCGATACCCAATGGTGGAtt                                                                                <  2:728984/149‑1 (MQ=255)
                                                                    gCTTTTTTTGCCACCGACCACGGATTTGTTATGCTGGTGGCCTTTGTAGATCATAACGATAAGTGCGAATAAATTTCGCGCAACGCTTTTCGGGAGTCAGTATGGATATCATCTTTTATCACCCAACGTTCGATACCCAATGGTGGAt                                                                                 <  2:852348/148‑1 (MQ=255)
                                                                    gCTTTTTTTGCCACCGACCACGGATTTGTTATGCTGGTGGCCTTTGTAGATCATAACGATAAGTGCGAATAAATTTCGCGCAACGCTTTTCGGGAGTCAGTATGGATATCATCTTTTATCACCCAACGTTCGATACCCAATGGTGGATTGa                                                                              <  2:1139042/151‑1 (MQ=255)
                                                                     cTTTTTTTGCCACCGACCACGGATTTGTTATGCTGGTGGCCTTTGTAGATCATAACGATAAGTGCGAATAAATTTCGCGCAACGCTTTTCGGGAGTCAGTATGGATATCATCTTTTATCACCCAACGTTCGATACCCAATGGTGGATTg                                                                               >  1:230318/1‑149 (MQ=255)
                                                                     cTTTTTTTGCCACCGACCACGGATTTGTTATGCTGGTGGCCTTTGTAGATCATAACGATAAGTGCGAATAAATTTCGCGCAACGCTTTTCGGGAGTCAGTATGGATATCATCTTTTATCACCCAACGTTCGATACCCAATGGTGGATTg                                                                               >  1:229385/1‑149 (MQ=255)
                                                                       ttttttGCCACCGACCACGGATTTGTTATGCTGGTGGCCTTTGTAGATCATAACGATAAGTGCGAATAAATTTCGCGCAACGCTTTTCGGGAGTCAGTATGGATATCATCTTTTATCACCCAACGTTCGATACCCAATGGTGGATTGAg                                                                             <  1:930923/149‑1 (MQ=255)
                                                                          tttGCCACCGACCACGGATTTGTTATGCTGGTGGCCTTTGTAGATCATAACGATAAGTGCGAATAAATTTCGCGCAACGCTTTTCGGGAGTCAGTATGGATATCATCTTTTATCACCCAACGTTCGATACCCAATGGTGGATTGAGGCACt                                                                        >  1:884441/1‑151 (MQ=255)
                                                                           ttGCCACCGACCACGGATTTGTTATGCTGGTGGCCTTTGTAGATCATAACGATAAGTGCGAATAAATTTCGCGCAACGCTTTTCGGGAGTCAGTATGGATATCATCTTTTATCACCCAACGTTCGATACCCAATGGTGGATTGAGGCACTg                                                                       >  2:427973/1‑151 (MQ=255)
                                                                             gCCACCGACCACGGATTTGTTATGCTGGTGGCCTTTGTAGATCATAACGATAAGTGCGAATAAATTTCGCGCAACGCTTTTCGGGAGTCAGTATGGATATCATCTTTTATCACCCAACGTTCGATACCCAATGGTGGATTGAGGCACTgcg                                                                     >  2:395695/1‑151 (MQ=255)
                                                                             gCCACCGACCACGGATTTGTTATGCTGGTGGCCTTTGTAGATCATAACGATAAGTGCGAATAAATTTCGCGCAACGCTTTTCGGGAGTCAGTATGGATATCATCTTTTATCACCCAACGTTCGATACCCAATGGTGGATTGAGGCACTgcg                                                                     >  2:517138/1‑151 (MQ=255)
                                                                              ccACCGACCACGGATTTGTTATGCTGGTGGCCTTTGTAGATCATAACGATAAGTGCGAATAAATTTCGCGCAACGCTTTTCGGGAGTCAGTATGGATATCATCTTTTATCACCCAACGTTCGATACCCAATGGTGGATTGAGGCACTgcgc                                                                    >  2:869513/1‑151 (MQ=255)
                                                                                   gACCACGGATTTGTTATGCTGGTGGCCTTTGTAGATCATAACGATAAGTGCGAATAAATTTCGCGCAACGCTTTTCGGGAGTCAGTATGGATATCATCTTTTATCACCCAACGTTCGATACCCAATGGTGGATTGAGGCACTGCGCAAAGc                                                               >  1:618908/1‑151 (MQ=255)
                                                                                   gACCACGGATTTGTTATGCTGGTGGCCTTTGTAGATCATAACGATAAGTGCGAATAAATTTCGCGCAACGCTTTTCGGGAGTCAGTATGGATATCATCTTTTATCACCCAACGTTCGATACCCAATGGTGGATTGAGGCACTGCGCAAAGc                                                               >  2:1218137/1‑151 (MQ=255)
                                                                                   gACCACGGATTTGTTATGCTGGTGGCCTTTGTAGATCATAACGATAAGTGCGAATAAATTTCGCACAACGCTTTTCGGGAGTCAGTATGGATATCATCTTTTATCACCCAACGTTCGATACCCAATGGTGGATTGAGGCACTGCGCAAAGc                                                               >  2:1043007/1‑151 (MQ=255)
                                                                                            tttGTTATGCTGGTGGCCTTTGTAGATCATAACGATAAGTGCGAATAAATTTCGCGCAACGCTTTTCGGGAGTCAGTATGGATATCATCTTTTATCACCCAACGTTCGATACCCAATGGTGGATTGAGGCACTGCGCAAAGCTATTCCTc                                                       >  1:1240128/1‑150 (MQ=255)
                                                                                                  aTGCTGGTGGCCTTTGTAGATCATAACGATAAGTGCGAATAAATTTCGCGCAACGCTTTTCGGGAGTCAGTATGGATATCATCTTTTATCACCCAACGTTCGATACCCAATGGTGGATTGAGGCACTGCGCAAAGCTATTCCTCAGGCaa                                                 <  2:799448/150‑1 (MQ=255)
                                                                                                  aTGCTGGTGGCCTTTGTAGATCATAACGATAAGTGCGAATAAATTTCGCGCAACGCTTTTCGGGAGTCAGTATGGATATCATCTTTTATCACCCAACGTTCGATACCCAATGGTGGATTGAGGCACTGCGCAAAGCTATTCCTCAGGCa                                                  >  1:913893/1‑149 (MQ=255)
                                                                                                    gCTGGTGGCCTTTGTAGATCATAACGATAAGTGCGAATAAATTTCGCGCAACGCTTTTCGGGAGTCAGTATGGATATCATCTTTTATCACCCAACGTTCGATACCCAATGGTGGATTGAGGCACTGCGCAAAGCTATTCCTCAGGCAaga                                               <  1:672044/150‑1 (MQ=255)
                                                                                                    gCTGGTGGCCTTTGTAGATCATAACGATAAGTGCGAATAAATTTCGCGCAACGCTTTTCGGGAGTCAGTATGGATATCATCTTTTATCACCCAACGTTCGATACCCAATGGTGGATTGAGGCACTGCGCAAAGCTATTCCTCAGGCAaga                                               <  2:913806/150‑1 (MQ=255)
                                                                                                      tggtggCCTTTGTAGATCATAACGATAAGTGCGAATAAATTTCGCGCAACGCTTTTCGGGAGTCAGTATGGATATCATCTTTTATCACCCAACGTTCGATACCCAATGGTGGATTGAGGCACTGCGCAAAGCTATTCCTCAGGCAAGAGTc                                            >  2:871876/1‑151 (MQ=255)
                                                                                                           gCCTTTGTAGATCATAACGATAAGTGCGAATAAATTTCGCGCAACGCTTTTCGGGAGTCAGTATGGATATCATCTTTTATCACCCAACGTTCGATACCCAATGGTGGATTGAGGCACTGCGCAAAGCTATTCCTCAGGCAAGAGTCAGAGc                                       <  1:1063829/151‑1 (MQ=255)
                                                                                                           gCCTTTGTAGATCATAACGATAAATGCGAATAAATTTCGCGCAACGCTTTTCGGGAGTCAGTATGGATATCATCTTTTATCACCCAACGTTCGATACCCAATGGTGGATTGAGGCACTGCGCAAAGCTATTCCTCAGGCAAGAGTCAGAGc                                       >  2:616173/1‑151 (MQ=255)
                                                                                                            ccTTTGTAGATCATAACGATAAGTGCGAATAAATTTCGCGCAACGCTTTTCGGGAGTCAGTATGGATATCATCTTTTATCACCCAACGTTCGATACCCAATGGTGGATTGAGGCACTGCGCAAAGCTATTCCTCAGGCAAGAGTCAGAGc                                       >  2:1350179/1‑150 (MQ=255)
                                                                                                            ccTTTGTAGATCATAACGATAAGTGCGAATAAATTTCGCGCAACGCTTTTCGGGAGTCAGTATGGATATCATCTTTTATCACCCAACGTTCGATACCCAATGGTGGATTGAGGCACTGCGCAAAGCTATTCCTCAGGCAAGAGTCAGAGCa                                      <  1:1051387/151‑1 (MQ=255)
                                                                                                              tttGTAGATCATAACGATAAGTGCGAATAAATTTCGCGCAACGCTTTTCGGGAGTCAGTATGGATATCATCTTTTATCACCCAACGTTCGATACCCAATGGTGGATTGAGGCACTGCGCAAAGCTATTCCTCAGGCAAGAGTCAGAGCATg                                    >  1:29175/1‑151 (MQ=255)
                                                                                                                  tAGATCATAACGATAAGTGCGAATAAATTTCGCGCAACGCTTTTCGGGAGTCAGTATGGATATCATCTTTTATCACCCAACGTTCGATACCCAATGGTGGATTGAGGCACTGCGCAAAGCTATTCCTCAGGCAAGAGTCAGAGCATGGaa                                 >  2:1351232/1‑150 (MQ=255)
                                                                                                                   aGATCATAACGATAAGTGCGAATAAATTTCGCGCAACGCTTTTCGGGAGTCAGTATGGATATCATCTTTTATCACCCAACGTTCGATACCCAATGGTGGATTGAGGCACTGCGCAAAGCTATTCCTCAGGCAAGAGTCAGAGCATGGaaaa                               <  1:886944/151‑1 (MQ=255)
                                                                                                                     aTCATAACGATAAGTGCGAATAAATTTCGCGCAACGCTTTTCGGGAGTCAGTATGGATATCATCTTTTATCACCCAACGTTCGATACCCAATGGTGGATTGAGGCACTGCGCAAAGCTATTCCTCAGGCAAGAGTCAGAGCATGGAAAAg                              >  1:135791/1‑150 (MQ=255)
                                                                                                                       cATAACGATAAGTGCGAATAAATTTCGCGCAACGCTTTTCGGGAGTCAGTATGGATATCATCTTTTATCACCCAACGTTCGATACCCAATGGTGGATTGAGGCACTGCGCAAAGCTATTCCTCAGGCAAGAGTCAGAGCATGGAAAAGCgg                           <  2:840490/151‑1 (MQ=255)
                                                                                                                        aTAACGATAAGTGCGAATAAATTTCGCGCAACGCTTTTCGGGAGTCAGTATGGATATCATCTTTTATCACCCAACGTTCGATACCCAATGGTGGATTGAGGCACTGCGCAAAGCTATTCCTCAGGCAAGAGTCAGAGCATGGAAAAGCgg                           >  1:156567/1‑150 (MQ=255)
                                                                                                                        aTAACGATAAGTGCGAATAAATTTCGCGCAACGCTTTTCGGGAGTCAGTATGGATATCATCTTTTATCACCCAACGTTCGATACCCAATGGTGGATTGAGGCACTGCGCAAAGCTATTCCTCAGGCAAGAGTCAGAGCATGGAAAAGCGga                          <  2:1053781/151‑1 (MQ=255)
                                                                                                                        aTAACGATAAGTGCGAATAAATTTCGCGCAACGCTTTTCGGGAGTCAGTATGGATATCATCTTTTATCACCCAACGTTCGATACCCAATGGTGGATTGAGGCACTGCGCAAAGCTATTCCTCAGGCAAGAGTCAGAGCATGGAAAAGCGga                          <  2:230295/151‑1 (MQ=255)
                                                                                                                          aaCGATAAGTGCGAATAAATTTCGCGCAACGCTTTTCGGGAGTCAGTATGGATATCATCTTTTATCACCCAACGTTCGATACCCAATGGTGGATTGAGGCACTGCGCAAAGCTATTCCTCAGGCAAGAGTCAGAGCATGGAAAAGCgg                           >  1:1252021/1‑148 (MQ=255)
                                                                                                                          aaCGATAAGTGCGAATAAATTTCGCGCAACGCTTTTCGGGAGTCAGTATGGATATCATCTTTTATCACCCAACGTTCGATACCCAATGGTGGATTGAGGCACTGCGCAAAGCTATTCCTCAGGCAAGAGTCAGAGCATGGAAAAGCgg                           >  2:707455/1‑148 (MQ=255)
                                                                                                                          aaCGATAAGTGCGAATAAATTTCGCGCAACGCTTTTCGGGAGTCAGTATGGATATCATCTTTTATCACCCAACGTTCGATACCCAATGGTGGATTGAGGCACTGCGCAAAGCTATTCCTCAGGCAAGAGTCAGAGCATGGAAAAGCGgaga                        <  2:1240028/151‑1 (MQ=255)
                                                                                                                           aCGATAAGTGCGAATAAATTTCGCGCAACGCTTTTCGGGAGTCAGTATGGATATCATCTTTTATCACCCAACGTTCGATACCCAATGGTGGATTGAGGCACTGCGCAAAGCTATTCCTCAGGCAAGAGTCAGAGCATGGAAAAGCgg                           >  1:916846/1‑147 (MQ=255)
                                                                                                                           aCGATAAGTGCGAATAAATTTCGCGCAACGCTTTTCGGGAGTCAGTATGGATATCATCTTTTATCACCCAACGTTCGATACCCAATGGTGGATTGAGGCACTGCGCAAAGCTATTCCTCAGGCAAGAGTCAGAGCATGGAAAAGCGGAGAt                       <  2:609188/151‑1 (MQ=255)
                                                                                                                           aCGATAAGTGCGAATAAATTTCGCGCAACGCTTTTCGGGAGTCAGTATGGATATCATCTTTTATCACCCAACGTTCGATACCCAATGGTGGATTGAGGCACTGCGCAAAGCTATTCCTCAGGCAAGAGTCAGAGCATGGAAAAGCGGAGAt                       <  1:584993/151‑1 (MQ=255)
                                                                                                                              aTAAGTGCGAATAAATTTCGCGCAACGCTTTTCGGGAGTCAGTATGGATATCATCTTTTATCACCCAACGTTCGATACCCAATGGTGGATTGAGGCACTGCGCAAAGCTATTCCTCAGGCAAGAGTCAGAGCATGGAAAAGCGGAGATAAt                    <  1:133853/151‑1 (MQ=255)
                                                                                                                               tAAGTGCGAATAAATTTCGCGCAACGCTTTTCGGGAGTCAGTATGGATATCATCTTTTATCACCCAACGTTCGATACCCAATGGTGGATTGAGGCACTGCGCAAAGCTATTCCTCAGGCAAGAGTCAGAGCATGGAAAAGCGGAGATAATg                   >  2:863606/1‑151 (MQ=255)
                                                                                                                                aaGTGCGAATAAATTTCGCGCAACGCTTTTCGGGAGTCAGTATGGATATCATCTTTTATCACCCAACGTTCGATACCCAATGGTGGATTGAGGCACTGCGCAAAGCTATTCCTCAGGCAAGAGTCAGAGCATGGAAAAGCGGAGATAATg                   >  1:1181052/1‑150 (MQ=255)
                                                                                                                                 aGTGCGAATAAATTTCGCGCAACGCTTTTCGGGAGTCAGTATGGATATCATCTTTTATCACCCAACGTTCGATACCCAATGGTGGATTGAGGCACTGCGCAAAGCTATTCCTCAGGCAAGAGTCAGAGCATGGAAAAGCGGAGATAATGAc                 >  1:361651/1‑151 (MQ=255)
                                                                                                                                  gTGCGAATAAATTTCGCGCAACGCTTTTCGGGAGTCAGTATGGATATCATCTTTTATCACCCAACGTTCGATACCCAATGGTGGATTGAGGCACTGCGCAAAGCTATTCCTCAGGCAAGAGTCAGAGCATGGAAAAGCGGAGATAATGAct                <  1:1334783/151‑1 (MQ=255)
                                                                                                                                  gTGCGAATAAATTTCGCGCAACGCTTTTCGGGAGTCAGTATGGATATCATCTTTTATCACCCAACGTTCGATACCCAATGGTGGATTGAGGCACTGCGCAAAGCTATTCCTCAGGCAAGAGTCAGAGCATGGAAAAGCGGAGATAATGAct                <  1:1160873/151‑1 (MQ=255)
                                                                                                                                     cGAATAAATTTCGCGCAACGCTTTTCGGGAGTCAGTATGGATATCATCTTTTATCACCCAACGTTCGATACCCAATGGTGGATTGAGGCACTGCGCAAAGCTATTCCTCAGGCAAGAGTCAGAGCATGGAAAAGCGGAGATAATGActct              >  1:428786/1‑150 (MQ=255)
                                                                                                                                     cGAATAAATTTCGCGCAACGCTTTTCGGGAGTCAGTATGGATATCATCTTTTATCACCCAACGTTCGATACCCAATGGTGGATTGAGGCACTGCGCAAAGCTATTCCTCAGGCAAGAGTCAGAGCATGGAAAAGCGGAGATAATGACTctg             <  1:590283/151‑1 (MQ=255)
                                                                                                                                        aTAAATTTCGCGCAACGCTTTTCGGGAGTCAGTATGGATATCATCTTTTATCACCCAACGTTCGATACCCAATGGTGGATTGAGGCACTGCGCAAAGCTATTCCTCAGGCAAGAGTCAGAGCATGGAAAAGCGGAGATAATGACTctgctg          <  1:287059/151‑1 (MQ=255)
                                                                                                                                          aaaTTTCGCGCAACGCTTTTCGGGAGTCAGTATGGATATCATCTTTTATCACCCAACGTTCGATACCCAATGGTGGATTGAGGCACTGCGCAAAGCTATTCCTCAGGCAAGAGTCAGAGCATGGAAAAGCGGAGATAATGACTCTGCTGAt        <  2:117962/151‑1 (MQ=255)
                                                                                                                                           aaTTTCGCGAAACGTTTTCCGGGAGTCAGTATGGATATCACCTTTTATCCCCCAACGTTCGATCCCCAAGGGTGGTTTGAGGCACGGCGCAAAGCTATCCCTCAGGAAAGAGTCAGAGCATGGAAAAGCGGAGATAATGACTCTGCTAAtt       <  2:1067488/151‑1 (MQ=255)
                                                                                                                                            aTTTCGCGCAACGCTTTTCGGGAGTCAGTATGGATATCATCTTTTATCACCCAACGTTCGATACCCAATGGTGGATTGAGGCACTGCGCAAAGCTATTCCTCAGGCAAGAGTCAGAGCATGGAAAAGCGGAGATAATGACTCTGCTGATTa      <  2:1297629/151‑1 (MQ=255)
                                                                                                                                             tttCGCGCAACGCTTTTCGGGAGTCAGTATGGATATCATCTTTTATCACCCAACGTTCGATACCCAATGGTGGATTGAGGCACTGCGCAAAGCTATTCCTCAGGCAAGAGTCAGAGCATGGAAAAGCGGAGATAATGACTCTGCTGATTAt     >  1:1226117/1‑151 (MQ=255)
                                                                                                                                                cgcgCAACGCTTTTCGGGAGTCAGTATGGATATCATCTTTTATCACCCAACGTTCGATACCCAATGGTGGATTGAGGCACTGCGCAAAGCTATTCCTCAGGCAAGAGTCAGAGCATGGAAAAGCGGAGATAATGACTCTGCTGATTATGCt  >  1:699328/1‑151 (MQ=255)
                                                                                                                                                   |                                                                                                                                                   
AAACTTTTTGAAAAAATCGCGCGTTTATTCAAACTTCAATCAATGTGTGGTTTTAATAAGCGAAATCTGCTTTTTTTGCCACCGACCACGGATTTGTTATGCTGGTGGCCTTTGTAGATCATAACGATAAGTGCGAATAAATTTCGCACAACGCTTTTCGGGAGTCAGTATGGATATCATCTTTTATCACCCAACGTTCGATACCCAATGGTGGATTGAGGCACTGCGCAAAGCTATTCCTCAGGCAAGAGTCAGAGCATGGAAAAGCGGAGATAATGACTCTGCTGATTATGCT  >  NC_000913/1097717‑1098011

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A