Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F50 I1 R1
|
157 |
93.7 |
2947622 |
98.1% |
2891617 |
150.3 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,111,537 |
T→C |
pseudogene (554/963 nt) |
yghE ← |
pseudogene, secretion pathway protein, L‑type protein homology; putative general secretion pathway for protein export (GSP) |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,111,537 | 0 | T | C | 100.0%
| 299.1
/ NA
| 79 | pseudogene (554/963 nt) | yghE | pseudogene, secretion pathway protein, L‑type protein homology; putative general secretion pathway for protein export (GSP) |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (39/40); total (39/40) |
TGGGCGATATTTTTTCAGCGCCATCGTCACCTGAGAGCGTAAATTCACAATCCGCTTCTGCTCCGGGAACAACGTTAAGAACTGTTCCTCCGCCTGGGTGCGGCTTTGCGCCACCTGTTCGCTGACGCTCCATAACGTCACGCCCCGCTCCACTGCCAGCGCAACCAGAATCAGCAATATCGGCAGAATCATCACCCGCCAGCGCGCCCACTGTTTTCGGTAGCTGACGCGAGGCTGCCACGGCCCTGTCAGCAGGTTCCCTTCCGGTTCGCCATAAGTGGTAATGGCGGGCAGA > NC_000913/3111389‑3111683
|
tgGGCGATATTTTTTCAGCGCCATCGTCACCTGAGAGCGTAAATTCACAATCCGCTTCTGCTCCGGGAACAACGTTAAGAACTGTTCCTCCGCCTGGGTGCGGCTTTGCGCCACCTGTTCGCTGACGCTCCATAACGTCACgccccgcccc > 1:1305982/1‑151 (MQ=255)
atTTTTTCAGCGCCATCGTCACCTGAGAGCGTAAATTCACAATCCGCTTCTGCTCCGGGAACAACGTTAAGAACTGTTCCTCCGCCTGGGTGCGGCTTTGCGCCACCTGTTCGCTGACGCTCCATAACGTCACGCCCCGCCCCACTGCCa < 2:255623/150‑1 (MQ=255)
tttttCAGCGCCATCGTCACCTGAGAGCGTAAATTCACAATCCGCTTCTGCTCCGGGAACAACGTTAAGAACTGTTCCTCCGCCTGGGTGCGGCTTTGCGCCACCTGTTCGCTGACGCTCCATAACGTCACGCCCCGCCCCACTGCCAgcg > 1:715817/1‑151 (MQ=255)
ttCAGCGCCATCGTCACCTGAGAGCGTAAATTCACAATCCGCTTCTGCTCCGGGAACAACGTTAAGAACTGTTCCTCCGCCTGGGTGCGGCTTTGCGCCACCTGTTCGCTGACGCTCCATAACGTCACGCCCCGCCCCACTGCCAGCGCa < 2:32159/150‑1 (MQ=255)
cAGCGCCATCGTCACCTGAGAGCGTAAATTCACAATCCGCTTCTGCTCCGGGAACAACGTTAAGAACTGTTCCTCCGCCTGGGTGCGGCTTTGCGCCACCTGTTCGCTGACGCTCCATAACGTCACGCCCCGCCCCACTGCCAGCGCAAcc > 1:1305899/1‑151 (MQ=255)
aGCGCCATCGTCACCTGAGAGCGTAAATTCACAATCCGCTTCTGCTCCGGGAACAACGTTAAGAACTGTTCCTCCGCCTGGGTGCGGCTTTGCGCCACCTGTTCGCTGACGCTCCATAACGTCACGCCCCGCCCCACTGCCAGCGCAACCa < 2:631471/151‑1 (MQ=255)
aTCGTCACCTGAGAGCGTAAATTCACAATCCGCTTCTGCTCCGGGAACAACGTTAAGAACTGTTCCTCCGCCTGGGTGCGGCTTTGCGCCACCTGTTCGCTGACGCTCCATAACGTCACGCCCCGCCCCACTGCCAGCGCAACCAGAATc > 2:568338/1‑150 (MQ=255)
aTCGTCACCTGAGAGCGTAAATTCACAATCCGCTTCTGCTCCGGGAACAACGTTAAGAACTGTTCCTCCGCCTGGGTGCGGCTTTGCGCCACCTGTTCGCTGACGCTCCATAACGTCACGCCCCGCCCCACTGCCAGCGCAACCAGAATCa < 1:160215/151‑1 (MQ=255)
tCACCTGAGAGCGTAAATTCACAATCCGCTTCTGCTCCGGGAACAACGTTAAGAACTGTTCCTCCGCCTGGGTGCGGCTTTGCGCCACCTGTTCGCTGACGCTCCATAACGTCACGCCCCGCCCCACTGCCAGCGCAACCAGAATCAGCa > 2:1384971/1‑150 (MQ=255)
cACCTGAGAGCGTAAATTCACAATCCGCTTCTGCTCCGGGAACAACGTTAAGAACTGTTCCTCCGCCTGGGTGCGGCTTTGCGCCACCTGTTCGCTGACGCTCCATAACGTCACGCCCCGCCCCACTGCCAGCGCAACCAGAATCAGCAat > 1:221156/1‑151 (MQ=255)
ccTGAGAGCGTAAATTCACAATCCGCTTCTGCTCCGGGAACAACGTTAAGAACTGTTCCTCCGCCTGGGTGCGGCTTTGCGCCACCTGTTCGCTGACGCTCCATAACGTCACGCCCCGCCCCACTGCCAGCGCAACCAGAATCAGCAatat > 2:766216/1‑151 (MQ=255)
cTGAGAGCGTAAATTCACAATCCGCTTCTGCTCCGGGAACAACGTTAAGAACTGTTCCTCCGCCTGGGTGCGGCTTTGCGCCACCTGTTCGCTGACGCTCCATAACGTCACGCCCCGCCCCACTGCCAGCGCAACCAGAATCAGCAATATc > 1:1164015/1‑151 (MQ=255)
cTGAGAGCGTAAATTCACAATCCGCTTCTGCTCCGGGAACAACGTTAAGAACTGTTCCTCCGCCTGGGTGCGGCTTTGCGCCACCTGTTCGCTGACGCTCCATAACGTCACGCCCCGCCCCACTGCCAGCGCAACCAGAATCAGCAATATc > 1:967284/1‑151 (MQ=255)
cTGAGAGCGTAAATTCACAATCCGCTTCTGCTCCGGGAACAACGTTAAGAACTGTTCCTCCGCCTGGGTGCGGCTTTGCGCCACCTGTTCGCTGACGCTCCATAACGTCACGCCCCGCCCCACTGCCAGCGCAACCAGAATCAGCAATATc > 2:64356/1‑151 (MQ=255)
agagCGTAAATTCACAATCCGCTTCTGCTCCGGGAACAACGTTAAGAACTGTTCCTCCGCCTGGGTGCGGCTTTGCGCCACCTGTTCGCTGACGCTCCATAACGTCACGCCCCGCCCCACTGCCAGCGCAACCAGAATCAGCAATATCGGc < 1:83229/151‑1 (MQ=255)
gagCGTAAATTCACAATCCGCTTCTGCTCCGGGAACAACGTTAAGAACTGTTCCTCCGCCTGGGTGCGGCTTTGCGCCACCTGTTCGCTGACGCTCCATAACGTCACGCCCCGCCCCACTGCCAGCGCAACCAGAATCAGCAATATCGGc > 1:1407935/1‑150 (MQ=255)
gagCGTAAATTCACAATCCGCTTCTGCTCCGGGAACAACGTTAAGAACTGTTCCTCCGCCTGGGTGCGGCTTTGCGCCACCTGTTCGCTGACGCTCCATAACGTCACGCCCCGCCCCACTGCCAGCGCAACCAGAATCAGCAATATCGGCa < 1:598052/151‑1 (MQ=255)
agCGTAAATTCACAATCCGCTTCTGCTCCGGGAACAACGTTAAGAACTGTTCCTCCGCCTGGGTGCGGCTTTGCGCCACCTGTTCGCTGACGCTCCATAACGTCACGCCCCGCCCCACTGCCAGCGCAACCAGAATCAGCAATATCGGc > 2:1201655/1‑149 (MQ=255)
cGTAAATTCACAATCCGCTTCTGCTCCGGGAACAACGTTAAGAACTGTTCCTCCGCCTGGGTGCGGCTTTGCGCCACCTGTTCGCTGACGCTCCATAACGTCACGCCCCGCCCCACTGCCAGCGCAACCAGAATCAGCAATATCGGCAGaa < 1:768000/151‑1 (MQ=255)
aaTTCACAATCCGCTTCTGCTCCGGGAACAACGTTAAGAACTGTTCCTCCGCCTGGGTGCGGCTTTGCGCCACCTGTTCGCTGACGCTCCATAACGTCACGCCCCGCCCCACTGCCAGCGCAACCAGAATCAGCAATATCGGCAGAatcat > 2:133500/1‑151 (MQ=255)
caATCCGCTTCTGCTCCGGGAACAACGTTAAGAACTGTTCCTCCGCCTGGGTGCGGCTTTGCGCCACCTGTTCGCTGACGCTCCATAACGTCACGCCCCGCCCCACTGCCAGCGCAACCAGAATCAGCAATATCGGCAGAATCATCAccc > 2:1292448/1‑150 (MQ=255)
caATCCGCTTCTGCTCCGGGAACAACGTTAAGAACTGTTCCTCCGCCTGGGTGCGGCTTTGCGCCACCTGTTCGCTGACGCTCCATAACGTCACGCCCCGCCCCACTGCCAGCGCAACCAGAATCAGCAATATCGGCAGAATCATCAccc > 1:1136621/1‑150 (MQ=255)
caATCCGCTTCTGCTCCGGGAACAACGTTAAGAACTGTTCCTCCGCCTGGGTGCGGCTTTGCGCCACCTGTTCGCTGACGCTCCATAACGTCACGCCCCGCCCCACTGCCAGCGCAACCAGAATCAGCAATATCGGCAGAATCATCACCCg < 2:1459496/151‑1 (MQ=255)
ccGCTTCTGCTCCGGGAACAACGTTAAGAACTGTCCCCCCGCCTGGGTGCGGCTTTGCTCCACCTGTTCGCTGACGCTCCATAACGGCACGCCCCGCCCCACTGCCGGCGCAACCAGAATCAGCAATATCGGCAGAATCATCACCCGCCa < 2:844622/150‑1 (MQ=255)
cGCTTCTGCTCCGGGAACAACGTTAAGAACTGTTCCTCCGCCTGGGTGCGGCTTTGCGCCACCTGTTCGCTGACGCTCCATAACGTCACGCCCCGCCCCACTGCCAGCGCAACCAGAATCAGCAATATCGGCAGAATCATCACCCGCCAgc > 2:954569/1‑151 (MQ=255)
gCTTCTGCTCCGGGAACAACGTTAAGAACTGTTCCTCCGCCTGGGTGCGGCTTTGCGCCACCTGTTCGCTGACGCTCCATAACGTCACGCCCCGCCCCACTGCCAGCGCAACCAGAATCAGCAATATCGGCAGAATCATCACCCGCCAgc > 2:611626/1‑150 (MQ=255)
cTGCTCCGGGAACAACGTTAAGAACTGTTCCTCCGCCTGGGTGCGGCTTTGCGCCACCTGTTCGCTGACGCTCCATAACGTCACGCCCCGCCCCACTGCCAGCGCAACCAGAATCAGCAATATCGGCAGAATCATCACCCGCCAGCGCGcc > 1:14783/1‑151 (MQ=255)
cTCCGGGAACAACGTTAAGAACTGTTCCTCCGCCTGGGTGCGGCTTTGCGCCACCTGTTCGCTGACGCTCCATAACGTCACGCCCCGCCCCACTGCCAGCGCAACCAGAATCAGCAATATCGGCAGAATCATCACCCGCCAGCGCGCCCa < 1:1163182/150‑1 (MQ=255)
cTCCGGGAACAACGTTAAGAACTGTTCCTCCGCCTGGGTGCGGCTTTGCGCCACCTGTTCGCTGACGCTCCATAACGTCACGCCCCGCCCCACTGCCAGCGCAACCAGAATCAGCAATATCGGCAGAATCATCACCCGCCAGCGCGCCCAc > 2:1004000/1‑151 (MQ=255)
cTCCGGGAACAACGTTAAGAACTGTTCCTCCGCCTGGGTGCGGCTTTGCGCCACCTGTTCGCTGACGCTCCATAACGTCACGCCCCGCCCCACTGCCAGCGCAACCAGAATCAGCAATATCGGCAGAATCATCACCCGCCAGCGCGCCCAc > 2:740761/1‑151 (MQ=255)
ccGGGAACAACGTTAAGAACTGTTCCTCCGCCTGGGTGCGGCTTTGCGCCACCTGTTCGCTGACGCTCCATAACGTCACGCCCCGCCCCACTGCCAGCGCAACCAGAATCAGCAATATCGGCAGAATCATCACCCGCCAGCGCGCCCACTg < 1:1471695/151‑1 (MQ=255)
ggAACAACTTTAAGAACTGTTCCTCCGCCTGGGTGCGGCTTTGCGCCACCTGTTCGCTGACGCTCCATAACGTCACGCCCCGCCCCACTGCCAGCGCAACCAGAATCAGCAATATCGGCAGAATCATCACCCGCCAGCGCGCCCACTGttt < 1:1254056/151‑1 (MQ=255)
aacaacGTTAAGAACTGTTCCTCCGCCTGGGTGCGGCTTTGCGCCACCTGTTCGCTGACGCTCCATAACGTCACGCCCCGCCCCACTGCCAGCGCTACCAGAATCAGCAATATCGGCAGAATCATCACCCGCCAGCGCGCCCACTGTTTTc > 1:1367857/1‑151 (MQ=255)
aacaacGTTAAGAACTGTTCCTCCGCCTGGGTGCGGCTTTGCGCCACCTGTTCGCTGACGCTCCATAACGTCACGCCCCGCCCCACTGCCAGCGCAACCAGAATCAGCAATATCGGCAGAATCATCACCCGCCAGCGCGCCCACTGtttt < 1:487443/150‑1 (MQ=255)
caacGTTAAGAACTGTTCCTCCGCCTGGGTGCGGCTTTGCGCCACCTGTTCGCTGACGCTCCATAACGTCACGCCCCGCCCCACTGCCAGCGCAACCAGAATCAGCAATATCGGCAGAATCATCACCCGCCAGCGCGCCCACTGTTTTCgg > 2:1211594/1‑151 (MQ=255)
caacGTTAAGAACTGTTCCTCCGCCTGGGTGCGGCTTTGCGCCACCTGTTCGCTGACGCTCCATAACGTCACGCCCCGCCCCACTGCCAGCGCAACCAGAATCAGCAATATCGGCAGAATCATCACCCGCCAGCGCGCCCACTGTTTTCgg > 2:365394/1‑151 (MQ=255)
acGTTAAGAACTGTTCCTCCGCCTGGGTGCGGCTTTGCGCCACCTGTTCGCTGACGCTCCATAACGTCACGCCCCGCCCCACTGCCAGCGCAACCAGAATCAGCAATATCGGCAGAATCATCACCCGCCAGCGCGCCCACTGTTTTCGGt > 1:28195/1‑150 (MQ=255)
cGTTAAGAACTGTTCCTCCGCCTGGGTGCGGCTTTGCGCCACCTGTTCGCTGACGCTCCATAACGTCACGCCCCGCCCCACTGCCAGCGCAACCAGAATCAGCAATATCGGCAGAATCATCACCCGCCAGCGCGCCCACTGTTTTCGGTAg < 2:855729/151‑1 (MQ=255)
cGTTAAGAACTGTTCCTCCGCCTGGGTGCGGCTTTGCGCCACCTGTTCGCTGACGATCCATAACGTCACGCCCCGCCCCACTGCCAGCGCAACCAGAATCAGCAATATCGGCAGAATCATCACCCGCCAGCGCGCCCACTGTTTTCg > 1:1018050/1‑147 (MQ=255)
ttAAGAACTGTTCCTCCGCCTGGGTGCGGCTTTGCGCCACCTGTTCGCTGACGCTCCATAACGTCACGCCCCGCCCCACTGCCAGCGCAACCAGAATCAGCAATATCGGCAGAATCATCACCCGCCAGCGCGCCCACTGTTTTCGGTAGc < 1:1116058/150‑1 (MQ=255)
aggaccTGTTCCCCCCCCTGGGGGCGGCTTGGCCCCCCCTGTTCGCTGACGCCCCATACCGTCACGCCCCGCCCCACGGCCAGCGCAACCAGAATAAGAAATATCGCCAAAATCATCACCCGCCAGCGCGCCCACTGTTTTCGGTAGCTg < 2:1380810/145‑1 (MQ=255)
aaGAACTTTTCCTCCGCCGGGGTGCGGCTTTGCGCCCCCTGTTCGCTGACGCCCCATAACGTCACGCCCCGCCCCACTGCCAGCGCAACCAGAATCAGCAATATCGGCAGAATCATCACCCGCCAGCGCGCCCACTGTTTTCGGTAGCTg < 2:832933/150‑1 (MQ=255)
gAACTGTTCCTCCGCCTGGGTGCGGTTTTGCGCCCCCTGTTCGCTGACGCTCCATAACGTCACGCCCCGCCCCACTGCCAGCGCAACCAGAATCAGCAATATCGGCAGAATCATCACCCGCCAGCGCGCCCACTGTTTTCGGTAGCTGAcg < 1:57508/151‑1 (MQ=255)
aaCTGTTCCTCCGCCTGGGTGCGGCTTTGCGCCACCTGTTCGCTGACGCTCCATAACGTCACGCCCCGCCCCACTGCCAGCGCAACCAGAATCAGCAATATCGGCAGAATCATCACCCGCCAGCGCGCCCACTGTTTTCGGTAGCTGAcgc > 2:469821/1‑151 (MQ=255)
gTTCCTCCGCCTGGGTGCGGCTTTGCGCCACCTGTTCGCTGACGCTCCATAACGTCACGCCCCGCCCCACTGCCAGCGCAACCAGAATCAGCAATATCGGCAGAATCATCACCCGCCAGCGCGCCCACTGTTTTCGGTAGCTGACGCGAgg > 1:216974/1‑151 (MQ=255)
ttCCTCCGCCTGGGTGCGGCTTTGCGCCCCCTGTTCGCTGACGCTCCATAACGTCACGCCCCGCCCCACTGCCAGCGCAACCAGAATCAGCAATATCGGCAGAATCATCACCCGCCAGCGCGCCCACTGTTTTCGGTAGCTGACGCGa < 2:1442236/148‑1 (MQ=255)
cccccgggggccGGTTTTGCGCCCCCTTTTCGCTGACGCCCCATAACGTCCCGCCCCGCCCCCCTGCCAGCGCAACCAGAATCAGCAATATCGGCAGAATCACCACCCGCCAGCGCGCCCACTGTTTTCGGTAGCTGACGCGAGGCTGCCa < 2:866974/140‑1 (MQ=255)
cTGGGTGCGGCTTTGCGCCACCTGTTCGCTGACGCTCCATAACGTCACGCCCCGCCCCACTGCCAGCGCAACCAGAATCAGCAATATCGGCAGAATCATCACCCGCCAGCGCGCCCACTGTTTTCGGTAGCTGACGCGAGGCTGCCACGGc > 1:22948/1‑151 (MQ=255)
gggTGCGGCTTTGCGCCCCCTGTCCGCTGACGCCCCATAACGCCACGCCCCGCCCCACTGCCAGCGCAACCAAAATCAGCAATATCGGCAGAATCATCACCCGCCAGCGCGCCCACTGTTTTCGGTAGCTGACGCGAGGCTGCCACg < 1:653475/147‑1 (MQ=255)
gTGCGGCTTTGCGCCCCCTGTTCGCTGACGCTCCATAACGTCACCCCCCGCCCCACTGCCAGCGCAACCAGAATCAGCAATATCGGCAGAATCATCACCCGCCAGCGCGCCCACTGTTTTCGGTAGCTGACGCGAGGCTGCCACGGCCCTg < 2:229773/151‑1 (MQ=255)
ggCTTTGCGCCACCTGTTCGCTGACGCTCCATAACGTCACGCCCCGCCCCACTGCCAGCGCAACCAGAATCAGCAATATCGGCAGAATCATCACCCGCCAGCGCGCCCACTGTTTTCGGTAGCTGACGCGAGGCTGCCACGGCCCTGTca < 1:539794/150‑1 (MQ=255)
ggCTTTGCGCCACCTGTTCGCTGACGCTCCATAACGTCACGCCCCGCCCCACTGCCAGCGCAACCAGAATCAGCAATATCGGCAGAATCATCACCCGCCAGCGCGCCCACTGTTTTCGGTAGCTGACGCGAGGCTGCCACGGCCCTGTc > 2:345094/1‑149 (MQ=255)
cTTTGCGCCACCTGTTCGCTGACGCTCCATAACGTCACGCCCCGCCCCACTGCCAGCGCAACCAGAATCGGCAATATCGGCAGAATCATCACCCGCCAGCGCGCCCACTGTTTTCGGTAGCTGACGCGAGGCTGCCACGGCCCTGTcagc > 1:493478/1‑150 (MQ=255)
cTTTGCGCCACCTGTTCGCTGACGCTCCATAACGTCACGCCCCGCCCCACTGCCAGCGCAACCAGAATCAGCAATATCGGCAGAATCATCACCCGCCAGCGCGCCCACTGTTTTCGGTAGCTGACGCGAGGCTGCCACGGCCCTGTcagc > 2:1306679/1‑150 (MQ=255)
tttGCGCCACCTGTTCGCTGACGCTCCATAACGTCACGCCCCGCCCCACTGCCAGCGCAACCAGAATCAGCAATATCGGCAGAATCATCACCCGCCAGCGCGCCCACTGTTTTCGGTAGCTGACGCGAGGCTGCCACGGCCCTGTcagc > 2:393072/1‑149 (MQ=255)
cccccTGTTCGCTGACGCTCCATAACGTCACGCCCCGCCCCACTGCCAGCGCAACCAGAATCAGCAATATCGGCAGAATCATCACCCGCCAGCGCGCCCACTGTTTTCGGTAGCTGACGCGAGGCTGCCACGGCCCTGTCAGCAGGTTcc < 2:987334/147‑1 (MQ=255)
cccccTGTTCGCGGACGCTCCATAACGTCACGCCCCGCCCCACTGCCAGCGCAACCAGAATCAGCAATATCGGCAGAATCATCCCCCGCCAGCGCGCCCACTGTTTTCGGTAGCTGACGCGAGGCTGCCACGGCCCTGTCAGCAgg < 2:679214/143‑1 (MQ=255)
ccACCTGTTCGCTGACGCTCCATAACGTCACGCCCCGCCCCACTGCCAGCGCAACCAGAATCAGCAATATCGGCAGAATCATCCCCCGCCAGCGCGCCCACTGTTTTCGGTAGCTGACGCGAGGCTGCCACGGCCCTGTCAGCAGGTTcc < 1:568404/150‑1 (MQ=255)
ccACCTGTTCGCTGACGCTCCATAACGTCACGCCCCGCCCCACTGCCAGCGCAACCAGAATCAGCAATATCGGCAGAATCATCACCCGCCAGCGCGCCCACTGTTTTCGGTAGCTGACGCGAGGCTGCCACGGCCCTGTCAGCAGGTTccc < 1:1344598/151‑1 (MQ=255)
ccccTGTTCGCTGACGCTCCATAACGTCACGCCCCGCCCCACTGCCAGCGCAACCAGAATCAGCAATATCGGCAGAATCATCACCCGCCAGCGCGCCCACTGTTTTCGGTAGCTGACGCGAGGCTGCCACGGCCCTGTCAGCAGGTTCCCt < 2:94267/149‑1 (MQ=255)
aCCTGTTCGCTGACGCTCCATAACGTCACGCCCCGCCCCACTGCCAGCGCAACCAGAATCAGCAATATCGGCAGAATCATCACCCGCCAGCGCGCCCACTGTTTTCGGTAGCTGACGCGAGGCTGCCACGGCCCTGTCAGCAGGTTCCCtt > 1:28751/1‑151 (MQ=255)
ccTGTTCGCTGACGCTCCATAACGTCACGCCCCGCCCCACTGCCAGCGCAACCAGAATCAGCAATATCGGCAGAATCATCACCCGCCAGCGCGCCCACTGTTTTCGGTAGCTGACGCGAGGCTGCCACGGCCCTGTCAGCAGGTTCCCtt < 1:289758/150‑1 (MQ=255)
ccTGTTCGCTGACGCTCCATAACGTCACGCCCCGCCCCACTGCCAGCGCAACCAGAATCAGCAATATCGGCAGAATCATCACCCGCCAGCGCGCCCACTGTTTTCGGTAGCTGACGCGAGGCTGCCACGGCCCTGTCAGCAGGTTCCCtt < 1:954660/150‑1 (MQ=255)
ttCGCTGACGCTCCATAACGTCACGCCCCGCCCCACTGCCAGCGCAACCAGAATCAGCAATATCGGCAGAATCATCACCCGCCAGCGCGCCCACTGTTTTCGGTAGCTGACGCGAGGCTGCCACGGCCCTGTCAGCAGGTTCCCTTCCGGt > 2:546362/1‑151 (MQ=255)
tccctaaCGCCCAATAACGTCACGCCCCGCCCCCCTGACAGCGCAGCCAGAATTAGCAATGTCGGCAGAATCGTCACCCGCCAGCGCGCCCGCTGTTTTCGGTAGCTGACGCGAGGCTGCCACGGCCCTGTCAGCAGGTTCCCTTcc < 2:1259502/141‑1 (MQ=255)
tCGCTGACGCTCCATAACGTCACGCCCCGCCCCACTGCCAGCGCAACCAGAATCAGCAATATCGGCAGAATCATCACCCGCCAGCGCGCCCACTGTTTTCGGTAGCTGACGCGAGGCTGCCACGGCCCTGTCAGCAGGTTCCCTTCCGGt < 1:957249/150‑1 (MQ=255)
cGCTGACGCTCCATAACGTCACGCCCCGCCCCACTGCCAGCGCAACCAGAATCAGCAATATCGGCAGAATCATCACCCGCCAGCGCGCCCACTGTTTTCGGTAGCTGACGCGAGGCTGCCACGGCCCTGTCAGCAGGTTCCCTTCCGGTTc > 1:1102671/1‑151 (MQ=255)
tGACGCTCCATAACGTCACGCCCCGCCCCACTGCCAGCGCAACCAGAATCAGCAATATCGGCAGAATCATCACCCGCCAGCGCGCCCACTGTTTTCGGTAGCTGACGCGAGGCTGCCACGGCCCTGTCAGCAGGTTCCCTTCCGGTTCGcc > 2:594658/1‑151 (MQ=255)
tGACGCTCCATAACGTCACGCCCCGCCCCACTGCCAGCGCAACCAGAATCAGCAATATCGGCAGAATCATCACCCGCCAGCGCGCCCACTGTTTTCGGTAGCTGACGCGAGGCTGCCACGGCCCTGTCAGCAGGTTCCCTTCCGGTTCGcc > 1:964446/1‑151 (MQ=255)
aCGCTCCATAACGTCACGCCCCGCCCCACTGCCAGCGCAACCAGAATCAGCAATATCGGCAGAATCATCACCCGCCAGCGCGCCCACTGTTTTCGGTAGCTGACGCGAGGCTGCCACGGCCCTGTCAGCAGGTTCCCTTCCGGTTCGCCAt > 1:1067380/1‑151 (MQ=255)
cTCCATAACGTCACCCCCCGCCCCACTGCCAGCGCAACCAGAATCAGCAATATCGGCAGAATCATCCCCCGCCAGCGCGCCCACTGTTTTCGGTAGCTGACGCGAGGCTGCCACGGCCCTGTCAGCAGGTTCCCTTCCGGTTCGCCATaa < 2:761616/150‑1 (MQ=255)
ccATAACGTCCCGCCCCGCCCCACTGCCAGCGCAACCAGAATCAGCAATATCGGCAGAATCATCACCCGCCAGCGCGCCCACTGTTTTCGGTAGCTGACGCGAGGCTGCCACGGCCCTGTCAGCAGGTTCCCTTCCGGTTCGCCATAAGt < 2:790707/150‑1 (MQ=255)
aTACCGTCGCGCCCCGCCCCACTGCCAGCGCAACCAGAATCAGCAATAGCGGCAGAATCATCCCCCGCCAGCGCGCCCACTGTTTTCGGTAGCTGACGCGAGGCTGCCACGGCCCTGTCAGCAGGTTCCCTTCCGGTTCGCCATAAGTGGt < 2:967190/151‑1 (MQ=255)
aTACCGTCACGCCCCGCCCCACTGCCAGCGCAACCAGAATCAGCAATATCGGCAGAATCATCCCCCGCCAGCGCGCCCACTGTTTTCGGTAGCTGACGCGAGGCTGCCACGGCCCTGTCAGCAGGTTCCCTTCCGGTTCGCCATAAGTGGt < 1:14730/151‑1 (MQ=255)
tAACGTCACGCCCCGCCCCACTGCCAGCGCAACCAGAATCAGCAATATCGGCAGAATCATCACCCGCCAGCGCGCCCACTGTTTTCGGTAGCTGACGCGAGGCTGCCACGGCCCTGTCAGCAGGTTCCCTTCCGGTTCGCCATAAGTGGt > 1:899221/1‑150 (MQ=255)
accGTCACGCCCCGCCCCATTGCCAGCGCAACCAGAACCAGAAATAACGGCAGAATCATCACCCGCCAGCGCGCCCACTGTTTTCGGTAGCTGACGCGAGGCTGCCACGGCCCTGTCAGCAGGTTCCCTTCCGGTTCGCCa < 1:960108/139‑1 (MQ=255)
aaCGTCACGCCCCGCCCCACTGCCAGCGCAACCAGAATCAGCAATATCGGCAGAATCATCACCCGCCAGCGCGCCCACTGTTTTCGGTAGCTGACGCGAGGCTGCCACGGCCCTGTCAGCAGGTTCCCTTCCGGTTCGCCATAAGTgg < 2:1006409/148‑1 (MQ=255)
gccccgccccACTGCCAGCGCAACCAGAATCAGCAATATGGCCAGAATCATCCCCCGCCAGCGCGCCCACTGTTTTCGGTAGCTGACGCGAGGCTGCCACGGCCCTGTCAGCAGGTTCCCTTCCGGTTCGCCATAAGTGGTAATGGCggg < 1:872473/150‑1 (MQ=255)
ccccGCCCCACTGCCAGCGCAACCAGAATCAGCAATATCGGCAGAATCATCACCCGCCAGCGCGCCCACTGTTTTCGGTAGCTGACGCGAGGCTGCCACGGCCCTGTCAGCAGGTTCCCTTCCGGTTCGCCATAAGTGGTAATGGCgg < 1:446329/148‑1 (MQ=255)
ccccGCCCCACTGCCAGCGCAACCAGAATCAGCAATATCGGCAGAATCATCACCCGCCAGCGCGCCCACTGTTTTCGGTAGCTGACGCGAGGCTGCCACGGCCCTGTCAGCAGGTTCCCTTCCGGTTCGCCATAAGTGGTAATGGCGGGc > 1:128817/1‑150 (MQ=255)
ccGCCCCACTGCCAGCGCAACCAGAATCAGCAATATCGGCAGAATCATCACCCGCCAGCGCGCCCACTGTTTTCGGTAGCTGACGCGAGGCTGCCACGGCCCTGTCAGCAGGTTCCCTTCCGGTTCGCCATAAGTGGTAATGGCGGGCaga < 1:821080/151‑1 (MQ=255)
|
TGGGCGATATTTTTTCAGCGCCATCGTCACCTGAGAGCGTAAATTCACAATCCGCTTCTGCTCCGGGAACAACGTTAAGAACTGTTCCTCCGCCTGGGTGCGGCTTTGCGCCACCTGTTCGCTGACGCTCCATAACGTCACGCCCCGCTCCACTGCCAGCGCAACCAGAATCAGCAATATCGGCAGAATCATCACCCGCCAGCGCGCCCACTGTTTTCGGTAGCTGACGCGAGGCTGCCACGGCCCTGTCAGCAGGTTCCCTTCCGGTTCGCCATAAGTGGTAATGGCGGGCAGA > NC_000913/3111389‑3111683
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
