Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F50 I1 R1 157 93.7 2947622 98.1% 2891617 150.3

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,571,794 T→C N570S (AAC→AGC)  glgB ← 1,4‑alpha‑glucan branching enzyme

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,571,7940TC100.0% 233.5 / NA 64N570S (AAC→AGC) glgB1,4‑alpha‑glucan branching enzyme
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (32/32);  total (32/32)

AGTTCATGCATTGCTTTATGGTGGCGGTAGGTGAGGTTCAGATCGCGCACCAGACGCTGGACACCGTGGTGCCAGTTATCGCCGCCTTCCAACAGATGCCAGTCGAGGCTGGCGTCATGGTTCCACTCGCGGCCCTGGGCAAATTCGTTACCCATGAACAGTAGTTTCTTGCCCGGGAATGCCCACATCCAGCCATAGTAGGCGCGCAGGTTCGCGAATTTCTGCCATGCGTCGCCCGGCATGCGGTCGAGAATCGATTTTTTACCGTGGACCACTTCATCATGCGACAACGGC  >  NC_000913/3571647‑3571940
                                                                                                                                                   |                                                                                                                                                  
aGTTCATGCATTGCTTTATGGTGGCGGTAGGTGAGGTTCAGATCGCGCACCAGACGCTGGACACCGTGGTGCCAGTTATCGCCGCCTTCCAACAGATGCCAGTCGAGGCTGGCGTCATGGTTCCACTCGCGGCCCTGGGCAAATTCGCTAc                                                                                                                                                 <  2:712119/151‑1 (MQ=255)
 gTTCATGCATTGCTTTATGGTGGCGGTAGGTGAGGTTCAGATCGCGCACCAGACGCTGGACACCGTGGTGCCAGTTATCGCCGCCTTCCAACAGATGCCAGTCGAGGCTGGCGTCATGGTTCCACTCGCGGCCCTGGGCAAATTCGCTAcc                                                                                                                                                <  2:1088139/151‑1 (MQ=255)
    cATGCATTGCTTTATGGTGGCGGTAGGTGAGGTTCAGATCGCGCACCAGACGCTGGACACCGTGGTGCCAGTTATCGCCGCCTTCCAACAGATGCCAGTCGAGGCTGGCGTCATGGTTCCACTCGCGGCCCTGGGCAAATTCGCTACCCAt                                                                                                                                             >  2:395568/1‑151 (MQ=255)
       gCATTGCTTTATGGTGGCGGTAGGTGAGGTTCAGATCGCGCACCAGACGCTGGACACCGTGGTGCCAGTTATCGCCGCCTTCCAACAGATGCCAGTCGAGGCTGGCGTCATGGTTCCACTCGCGGCCCTGGGCAAATTCGCTACCCATGa                                                                                                                                           >  1:1027042/1‑150 (MQ=255)
         aTTGCTTTATGGTGGCGTTAGGTGAGGTTCAGATCGCGCACCAGACGCTGGACACCGTGGTGCCAGTTATCGCCGCCTTCCAACAGATGCCAGTCGAGGCTGGCGTCATGGTTCCACTCGCGGCCCTGGGCAAATTAGCTACCCATGa                                                                                                                                           >  2:941500/1‑148 (MQ=255)
          ttGCTTTATGGTGGCGGTAGGTGAGGTTCAGATCGCGCACCAGACGCTGGACACCGTGGTGCCAGTTATCGCCGCCTTCCAACAGATGCCAGTCGAGGCTGGCGTCATGGTTCCACTCGCGGCCCTGGGCAAATTCGCTACCCATGAAc                                                                                                                                         >  1:272741/1‑149 (MQ=255)
                tATGGTGGCGGTAGGTGAGGTTCAGATCGCGCACCAGACGCTGGACACCGTGGTGCCAGTTATCGCCGCCTTCCAACAGATGCCAGTCGAGGCTGGCGTCATGGTTCCACTCGCGGCCCTGGGCAAATTCGCTACCCATGAACAGTAGttt                                                                                                                                 >  1:234150/1‑151 (MQ=255)
                tATGGTGGCGGTAGGTGAGGTTCAGATCGCGCACCAGACGCTGGACACCGTGGTGCCAGTTATCGCCGCCTTCCAACAGATGCCAGTCGAGGCTGGCGTCATGGTTCCACTCGCGGCCCTGGGCAAATTCGCTACCCATGAACAGTAGtt                                                                                                                                  <  2:511542/150‑1 (MQ=255)
                 aTGGTGGCGGTAGGTGAGGTTCAGATCGCGCACCAGACGCTGGACACCGTGGTGCCAGTTATCGCCGCCTTCCAACAGATGCCAGTCGAGGCTGGCGTCATGGTTCCACTCGCGGCCCTGGGCAAATTCGCTACCCATGAACAGTAGttt                                                                                                                                 <  2:1205815/150‑1 (MQ=255)
                 aTGGTGGCGGTAGGTGAGGTTCAGATCGCGCACCAGACGCTGGACACCGTGGTGCCAGTTATCGCCGCCTTCCAACAGATGCCAGTCGAGGCTGGCGTCATGGTTCCACTCGCGGCCCTGGGCAAATTCGCTACCCATGAACAGTAGTTTc                                                                                                                                >  2:567176/1‑151 (MQ=255)
                   ggtggCGGTAGGTGAGGTTCAGATCGCGCACCAGACGCTGGACACCGTGGTGCCAGTTATCGCCGCCTTCCAACAGATGCCAGTCGAGGCTGGCGTCATGGTTCCACTCGCGGCCCTGGGCAAATTCGCTACCCATGAACAGTAGTTTCt                                                                                                                               <  2:724277/150‑1 (MQ=255)
                       gCGGTAGGTGAGGTTCAGATCGCGCACCAGACGCTGGACACCGTGGTGCCAGTTATCGCCGCCTTCCAACAGATGCCAGTCGAGGCTGGCGTCATGGTTCCACTCGCGGCCCTGGGCAAATTCGCTACCCATGAACAGTAGTTTCTTGccc                                                                                                                          <  1:1428465/151‑1 (MQ=255)
                        cGGTAGGTGAGGTTCAGATCGCGCACCAGACGCTGGACACCGTGGTGCCAGTTATCGCCGCCTTCCAACAGATGCCAGTCGAGGCTGGCGTCATGGTTCCACTCGCGGCCCTGGGCAAATTCGCTACCCATGAACAGTAGTTTCTTGCCCg                                                                                                                         <  2:461769/151‑1 (MQ=255)
                        cGGTAGGTGAGGTTCAGATCGCGCACCAGACGCTGGACACCGTGGTGCCAGTTATCGCCGCCTTCCAACAGATGCCAGTCGAGGCTGGCGTCATGGTTCCACTCGCGGCCCTGGGCAAATTCGCTACCCATGAACAGTAGTTTCTTGCCCg                                                                                                                         >  1:959627/1‑151 (MQ=255)
                         ggTAGGTGAGGTTCAGATCGCGCACCAGACGCTGGACACCGTGGTGCCAGTTATCGCCGCCTTCCAACAGATGCCAGTCGAGGCTGGCGTCATGGTTCCACTCGCGGCCCTGGGCAAATTCGCTACCCATGAACAGTAGTTTCTTGCCCgg                                                                                                                        <  2:760281/151‑1 (MQ=255)
                          gTAGGTGAGGTTCAGATCGCGCACCAGACGCTGGACACCGTGGTGCCAGTTATCGCCGCCTTCCAACAGATGCCAGTCGAGGCTGGCGTCATGGTTCCACTCGCGGCCCTGGGCAAATTCGCTACCCATGAACAGTAGTTTCTTGCCCggg                                                                                                                       <  2:351262/151‑1 (MQ=255)
                            aGGTGAGGTTCAGATCGCGCACCAGACGCTGGACACCGTGGTGCCAGTTATCGCCGCCTTCCAACAGATGCCAGTCGAGGCTGGCGTCATGGTTCCACTCGCGGCCCTGGGCAAATTCGCTACCCATGAACAGTAGTTTCTTGCCCGGGa                                                                                                                      >  2:687850/1‑150 (MQ=255)
                            aGGTGAGGTTCAGATCGCGCACCAGACGCTGGACACCGTGGTGCCAGTTATCGCCGCCTTCCAACAGATGCCAGTCGAGGCTGGCGTCATGGTTCCACTCGCGGCCCTGGGCAAATTCGCTACCCATGAACAGTAGTTTCTTGCCCGGGa                                                                                                                      <  1:900040/150‑1 (MQ=255)
                                gAGGTTCAGATCGCGCACCAGACGCTGGACACCGTGGTGCCAGTTATCGCCGCCTTCCAACAGATGCCAGTCAAGGCTGGCGTCATGGTTCCACTCGCGGCCCTGGGCAAATTCGCTACCCATGAACAGTAGTTTCTTGCCCGGGAATGca                                                                                                                 <  2:1202659/151‑2 (MQ=255)
                                 aGGTTCAGATCGCGCACCAGACGCTGGACACCGTGGTGCCAGTTATCGCCGCCTTCCAACAGATGCCAGTCGAGGCTGGCGTCATGGTTCCACTCGCGGCCCTGGGCAAATTCGCTACCCATGAACAGTAGTTTCTTGCCCGGGAATGccc                                                                                                                >  2:1354546/1‑151 (MQ=255)
                                      cAGATCGCGCACCAGACGCTGGACACCGTGGTGCCAGTTATCGCCGCCTTCCAACAGATGCCAGTCGAGGCTGGCGTCATGGTTCCACTCGCGGCCCTGGGCAAATTCGCTACCCATGAACAGTAGTTTCTTGCCCGGGAATGCCCACAt                                                                                                            <  2:1079390/150‑1 (MQ=255)
                                           cgcgCACCAGACGCTGGACACCGTGGTGCCAGTTATCGCCGCCTTCCAACAGATGCCAGTCGAGGCTGGCGTCATGGTTCCACTCGCGGCCCTGGGCAAATTCGCTACCCATGAACAGTAGTTTCTTGCCCGGGAATGCCCACATCCAGc                                                                                                       <  1:738651/150‑1 (MQ=255)
                                              gcACCAGACGCTGGACACCGTGGTGCCAGTTATCGCCGCCTTCCAACAGATGCCAGTCGAGGCTGGCGTCATGGTTCCACTCGCGGCCCTGGGCAAATTCGCTACCCATGAACAGTAGTTTCTTGCCCGGGAATGCCCACATCCAGCCAta                                                                                                   <  1:761408/151‑1 (MQ=255)
                                              gcACCAGACGCTGGACACCGTGGTGCCAGTTATCGCCGCCTTCCAACAGATGCCAGTCGAGGCTGGCGTCATGGTTCCACTCGCGGCCCTGGGCAAATTCGCTACCCATGAACAGTAGTTTCTTGCCCGGGAATGCCCACATCCAGCCAta                                                                                                   <  1:199204/151‑1 (MQ=255)
                                               cACCAGACGCTGGACACCGTGGTGCCAGTTATCGCCGCCTTCCAACAGATGCCAGTCGAGGCTGGCGTCATGGTTCCACTCGCGGCCCTGGGCAAATTCGCTACCCATGAACAGTAGTTTCTTGCCCGGGAATGCCCACATCCAGCCAt                                                                                                    >  2:868637/1‑149 (MQ=255)
                                                       gCTGGACACCGTGGTGCCAGTTATCGCCGCCTTCCAACAGATGCCAGTCGAGGCTGGCGTCATGGTTCCACTCGCGGCCCTGGGCAAATTCGCTACCCATGAACAGTAGTTTCTTGCCCGGGAATGCCCACATCCAGCCATAGTAGgcgcg                                                                                          >  2:896371/1‑151 (MQ=255)
                                                       gCTGGACACCGTGGTGCCAGTTATCGCCGCCTTCCAACAGATGCCAGTCGAGGCTGGCGTCATGGTTCCACTCGCGGCCCTGGGCAAATTCGCTACCCATGAACAGTAGTTTCTTGCCCGGGAATGCCCACATCCAGCCATAGTAGgcgcg                                                                                          >  1:624741/1‑151 (MQ=255)
                                                            acacCGTGGTGCCAGTTATCGCCGCCTTCCAACAGATGCCAGTCGAGGCTGGCGTCATGGTTCCACTCGCGGCCCTGGGCAAATTCGCTACCCATGAACAGTAGTTTCTTGCCCGGGAATGCCCACATCCAGCCATAGTAGGCGCGCAgg                                                                                      >  2:704246/1‑150 (MQ=255)
                                                             cacCGTGGTGCCAGTTATCGCCGCCTTCCAACAGATGCCAGTCGAGGCTGGCGTCATGGTTCCACTCGCGGCCCTGGGCAAATTCGCTACCCATGAACAGTAGTTTCTTGCCCGGGAATGCCCACATCCAGCCATAGTAGGCGCGCAGGtt                                                                                    >  1:990806/1‑151 (MQ=255)
                                                                   ggtgCCAGTTATCGCCGCCTTCCAACAGATGCCAGTCGAGGCTGGCGTCATGGTTCCACTCGCGGCCCTGGGCAAATTCGCTACCCATGAACAGTAGTTTCTTGCCCGGGAATGCCCACATCCAGCCATAGTAGGCGCGCAGGTTCGCGa                                                                               <  2:1075036/150‑1 (MQ=255)
                                                                    gtgCCAGTTATCGCCGCCTTCCAACAGATGCCAGTCGAGGCTGGCGTCATGGTTCCACTCGCGGCCCTGGGCAAATTCGCTACCCATGAACAGTAGTTTCTTGCCCGGGAATGCCCACATCCAGCCATAGTAGGCGCGCAGGTTCGCGAAt                                                                             >  1:381744/1‑151 (MQ=255)
                                                                     tgCCAGTTATCGCCGCC‑TCCAACAGATGCCAGTCGAGGCTGGCGTCATGGTTCCACTCGCGGCCCTGGGCAAATTCGCTACCCATGAACAGTAGTTTCTTGCCCGGGAATGCCCACATCCAGCCATAGTAGGCGCGCAGGTTCGCGAAttt                                                                           >  1:194037/1‑151 (MQ=255)
                                                                      gCCAGTTATCGCCGCCTTCCAACAGATGCCAGTCGAGGCTGGCGTCATGGTTCCACTCGCGGCCCTGGGCAAATTCGCTACCCATGAACAGTAGTTTCTTGCCCGGGAATGCCCACATCCAGCCATAGTAGGCGCGCAGGTTCGCGAAtt                                                                            <  1:358725/150‑1 (MQ=255)
                                                                            tATCGCCGCCTTCCAACAGATGCCAGTCGAGGCTGGCGTCATGGTTCCACTCGCGGCCCTGGGCAAATTCGCTACCCATGAACAGTAGTTTCTTGCCCGGGAATGCCCACATCCAGCCATAGTAGGCGCGCAGGTTCGCGAATTTCTGcc                                                                      >  1:372431/1‑150 (MQ=255)
                                                                             aTCGCCGCCTTCCAACAGATGCCAGTCGAGGCTGGCGTCATGGTTCCACTCGCGGCCCTGGGCAAATTCGCTACCCATGAACAGTAGTTTCTTGCCCGGGAATGCCCACATCCAGCCATAGTAGGCGCGCAGGTTCGCGAATTTCTGCCa                                                                     <  1:871271/150‑1 (MQ=255)
                                                                             aTCGCCGCCTTCCAACAGATGCCAGTCGAGGCTGGCGTCATGGTTCCACTCGCGGCCCTGGGCAAATTCGCTACCCATGAACAGTAGTTTCTTGCCCGGGAATGCCCACATCCAGCCATAGTAGGCGCGCAGGTTCGCGAATTTCTGCCAt                                                                    >  2:478570/1‑151 (MQ=255)
                                                                             aTCGCCGCCTTCCAACAGATGCCAGTCGAGGCTGGCGTCATGGTTCCACTCGCGGCCCTGGGCAAATTCGCTACCCATGAACAGTAGTTTCTTGCCCGGGAATGCCCACATCCAGCCATAGTAGGCGCGCAGGTTCGCGAATTTCTGCCAt                                                                    <  1:995159/151‑1 (MQ=255)
                                                                                 ccgccTTCCAACAGATGCCAGTCGAGGCTGGCGTCATGGTTCCACTCGCGGCCCTGGGCAAATTCGCTACCCATGAACAGTAGTTTCTTGCCCGGGAATGCCCACATCCAGCCATAGTAGGCGCGCAGGTTCGCGAATTTCTGCCATGCga                                                                <  2:699103/151‑2 (MQ=255)
                                                                                  cgccTTCCAACAGATGCCAGTCGAGGCTGGCGTCATGGTTCCACTCGCGGCCCTGGGCAAATTCGCTACCCATGAACAGTAGTTTCTTGCCCGGGAATGCCCACATCCAGCCATAGTAGGCGCGCAGGTTCGCGAATTTCTGCCATGCGTc                                                               <  1:539135/151‑1 (MQ=255)
                                                                                   gctttCCAACAGATGCCAGTCGAGGCTGGCGTCATGGTTCCACTCGCGGCCCTGGGCAAATTCGCTACCCATGAACAGTAGTTTCTTGCCCGGGAATGCCCACATCCAGCCATAGTAGGCGCGCAGGTTCGCGAATTTCTGCCATGCGTc                                                               <  2:1281309/147‑1 (MQ=255)
                                                                                        ccAACAGATGCCAGTCGAGGCTGGCGTCATGGTTCCACTCGCGGCCCTGGGCAAATTCGCTACCCATGAACAGTAGTTTCTTGCCCGGGAATGCCCACATCCAGCCATAGTAGGCGCGCAGGTTCGCGAATTTCTGCCATGCGTCGCCCg                                                          <  2:198818/150‑1 (MQ=255)
                                                                                           aCAGATGCCAGTCGAGGCTGGCGTCATGGTTCCACTCGCGGCCCTGGGCAAATTCGCTACTCATGAACAGTAGTTTCTTGCCCGGGAATGCCCACATCCAGCCATAGTAGGCGCGCAGGTTCGCGAATTTCTGCCATGCGTCGCCCGGCAt                                                      >  1:956456/1‑151 (MQ=255)
                                                                                              gATGCCAGTCGAGGCTGGCGTCATGGTTCCACTCGCGGCCCTGGGCAAATTCGCTACCCATGAACAGTAGTTTCTTGCCCGGGAATGCCCACATCCAGCCATAGTAGGCGCGCAGGTTCGCGAATTTCTGCCATGCGTCGCCCGGCATGCg                                                   <  1:567242/151‑1 (MQ=255)
                                                                                               aTGCCAGTCGAGGCTGGCGTCATGGTTCCACTCGCGGCCCTGGGCAAATTCGCTACCCATGAACAGTAGTTTCTTGCCCGGGAATGCCCACATCCAGCCATAGTAGGCGCGCAGGTTCGCGAATTTCTGCCATGCGTCGCCCGGCATGCgg                                                  >  2:384973/1‑151 (MQ=255)
                                                                                                  ccAGTCGAGGCTGGCGTCATGGTTCCACTCGCGGCCCTGGGCAAATTCGCTACCCATGAACAGTAGTTTCTTGCCCGGGAATGCCCACATCCAGCCATAGTAGGCGCGCAGGTTCGCGAATTTCTGCCATGCGTCGCCCGGCATGCGGTCg                                               <  1:1460530/151‑1 (MQ=255)
                                                                                                   cAGTCGAGGCTGGCGTCATGGTTCCACTCGCGGCCCTGGGCAAATTCGCTACCCATGAACAGTAGTTTCTTGCCCGGGAATGCCCACATCCAGCCATAGTAGGCGCGCAGGTTCGCGAATTTCTGCCATGCGTCGCCCGGCATGCGGTCg                                               >  1:734133/1‑150 (MQ=255)
                                                                                                        gAGGCTGGCGTCATGGTTCCACTCGCGGCCCTGGGCAAATTCGCTACCCATGAACAGTAGTTTCTTGCCCGGGAATGCCCACATCCAGCCATAGTAGGCGCGCAGGTTCGCGAATTTCTGCCATGCGTCGCCCGGCATGCGGTCGAGAAt                                          >  2:548388/1‑150 (MQ=255)
                                                                                                             tGGCGTCATGGTTCCACTCGCGGCCCTGGGCAAATTCGCTACCCATGAACAGTAGTTTCTTGCCCGGGAATGCCCACATCCAGCCATAGTAGGCGCGCAGGTTCGCGAATTTCTGCCATGCGTCGCCCGGCATGCGGTCGAGAATCGAttt                                    >  2:4897/1‑151 (MQ=255)
                                                                                                             tGGCGTCATGGTTCCACTCGCGGCCCTGGGCAAATTCGCTACCCATGAACAGTAGTTTCTTGCCCGGGAATGCCCACATCCAGCCATAGTAGGCGCGCAGGTTCGCGAATTTCTGCCATGCGTCGCCCGGCATGCGGTCGAGAATCGAttt                                    >  1:319399/1‑151 (MQ=255)
                                                                                                                cGTCATGGTTCCACTCGCGGCCCTGGGCAAATTCGCTACCCATGAACAGTAGTTTCTTGCCCGGGAATGCCCGCATCCAGCCATAGTAGGCGCGCAGGTTCGCGAATTTCTGCCATGCGTCGCCCGGCATGCGGTCGAGAATCGAtttt                                   <  2:568615/149‑1 (MQ=255)
                                                                                                                 gTCATGGTTCCACTCGCGGCCCTGGGCAAATTCGCTACCCATGAACAGTAGTTTCTTGCCCGGGAATGCCCACATCCAGCCATAGTAGGCGCGCAGGTTCGCGAATTTCTGCCATGCGTCGCCCGGCATGCGGTCGAGAATCGAtttt                                   >  2:166722/1‑148 (MQ=255)
                                                                                                                   cATGGTTCCACTCGCGGCCCTGGGCAAATTCGCTACCCATGAACAGTAGTTTCTTGCCCGGGAATGCCCACATCCAGCCATAGTAGGCGCGCAGGTTCGCGAATTTCTGCCATGCGTCGCCCGGCATGCGGTCGAGAATCGATTTTTTAcc                              <  1:785706/151‑1 (MQ=255)
                                                                                                                    aTGGTTCCACTCGCGGCCCTGGGCAAATTCGCTACCCATGAACAGTAGTTTCTTGCCCGGGAATGCCCACATCCAGCCATAGTAGGCGCGCAGGTTCGCGAATTTCTGCCATGCGTCGCCCGGCATGCGGTCGGGAATCGCTTTTTTatc                              >  2:645974/1‑148 (MQ=255)
                                                                                                                    aTGGTTCCACTCGCGGCCCTGGGCAAATTCGCTACCCATGAACAGTAGTTTCTTGCCCGGGAATGCCCACATCCAGCCATAGTAGGCGCGCAGGTTCGCGAATTTCTGCCATGCGTCGCCCGGCATGCGGTCGAGAATCGATTTTTTACCg                             <  1:9231/151‑1 (MQ=255)
                                                                                                                              tCGCGGCCCTGGGCAAATTCGCTACCCATGAACAGTAGTTTCTTGCCCGGGAATGCCCACATCCAGCCATAGTAGGCGCGCAGGTTCGCGAATTTCTGCCATGCGTCGCCCGGCATGCGGTCGAGAATCGATTTTTTACCGTGGACCACtt                   >  2:21226/1‑151 (MQ=255)
                                                                                                                                gcgGCCCTGGGCAAATTCGCTACCCATGAACAGTAGTTTCTTGCCCGGGAATGCCCACATCCAGCCATAGTAGGCGCGCAGGTTCGCGAATTTCTGCCATGCGTCGCCCGGCATGCGGTCGAGAATCGATTTTTTACCGTGGACCACTtc                  >  2:785039/1‑150 (MQ=255)
                                                                                                                                     ccTGGGCAAATTCGCTACCCATGAACAGTAGTTTCTTGCCCGGGAATGCCCACATCCAGCCATAGTAGGCGCGCAGGTTCGCGAATTTCTGCCATGCGTCGCCCGGCATGCGGTCGAGAATCGATTTTTTACCGTGGACCACTTCATCATg            >  1:1312788/1‑151 (MQ=255)
                                                                                                                                     ccTGGGCAAATTCGCTACCCATGAACAGTAGTTTCTTGCCCGGGAATGCCCACATCCAGCCATAGTAGGCGCGCAGGTTCGCGAATTTCTGCCATGCGTCGCCCGGCATGCGGTCGAGAATCGATTTTTTACCGTGGACCACTTCATCATg            <  1:129321/151‑1 (MQ=255)
                                                                                                                                          gCAAATTCGCTACCCATGAACAGTAGTTTCTTGCCCGGGAATGCCCACATCCAGCCATAGTAGGCGCGCAGGTTCGCGAATTTCTGCCATGCGTCGCCCGGCATGCGGTc                                                <  2:896174/110‑1 (MQ=255)
                                                                                                                                          gCAAATTCGCTACCCATGAACAGTAGTTTCTTGCCCGGGAATGCCCACATCCAGCCATAGTAGGCGCGCAGGTTCGCGAATTTCTGCCATGCGTCGCCCGGCATGCGGTc                                                >  1:896262/1‑110 (MQ=255)
                                                                                                                                          gCAAATTCGCTACCCATGAACAGTAGTTTCTTGCCCGGGAATGCCCACATCCAGCCATAGTAGGCGCGCAGGTTCGCGAATTTCTGCCATGCGTCGCCCGGCATGCGGTCGAGAATCGATTTTTTACCGTGGACCACTTCATCATGCGACa       <  1:1354652/151‑1 (MQ=255)
                                                                                                                                            aaaTTCGCTACCCATGAACAGTAGTTTCTTGCCCGGGAATGCCCACATCCAGCCATAGTAGGCGCGCAGGTTCGCGAATTTCTGCCATGCGTCGCCCGGCATGCGGTCGAGAATCGATTTTTTACCGTGGACCACTTCATCATGCGACAAc     <  1:478625/151‑1 (MQ=255)
                                                                                                                                              aTTCGCTACCCATGAACAGTAGTTTCTTGCCCGGGAATGCCCACATCCAGCCATAGTAGGCGCGCAGGTTCGCGAATTTCTGCCATGCGTCGCCCGGCATGCGGTCGAGAATCGATTTTTTACCGTGGACCACTTCATCATGCGACAACgg   >  1:912147/1‑151 (MQ=255)
                                                                                                                                                tCGCTACCCATGAACAGTAGTTTCTTGCCCGGGAATGCCCACATCCAGCCATAGTAGGCGCGCAGGTTCGCGAATTTCTGCCATGCGTCGCCCGGCATGCGGTCGAGAATCGATTTTTTACCGTGGACCACTTCATCATGCGACAACGGc  >  2:747340/1‑150 (MQ=255)
                                                                                                                                                   |                                                                                                                                                  
AGTTCATGCATTGCTTTATGGTGGCGGTAGGTGAGGTTCAGATCGCGCACCAGACGCTGGACACCGTGGTGCCAGTTATCGCCGCCTTCCAACAGATGCCAGTCGAGGCTGGCGTCATGGTTCCACTCGCGGCCCTGGGCAAATTCGTTACCCATGAACAGTAGTTTCTTGCCCGGGAATGCCCACATCCAGCCATAGTAGGCGCGCAGGTTCGCGAATTTCTGCCATGCGTCGCCCGGCATGCGGTCGAGAATCGATTTTTTACCGTGGACCACTTCATCATGCGACAACGGC  >  NC_000913/3571647‑3571940

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A