Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A3 F50 I1 R1
|
144 |
141.8 |
4677362 |
93.6% |
4378010 |
150.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,571,851 |
C→T |
R551H (CGC→CAC) |
glgB ← |
1,4‑alpha‑glucan branching enzyme |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,571,851 | 0 | C | T | 99.2%
| 497.7
/ ‑4.9
| 130 | R551H (CGC→CAC) | glgB | 1,4‑alpha‑glucan branching enzyme |
| Reads supporting (aligned to +/- strand): ref base C (1/0); new base T (65/64); total (66/64) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.90e-01 |
Only 100 of 131 total aligned reads displayed.
TGGACACCGTGGTGCCAGTTATCGCCGCCTTCCAACAGATGCCAGTCGAGGCTGGCGTCATGGTTCCACTCGCGGCCCTGGGCAAATTCGTTACCCATGAACAGTAGTTTCTTGCCCGGGAATGCCCACATCCAGCCATAGTAGGCGCGCAGGTTCGCGAATTTCTGCCATGCGTCGCCCGGCATGCGGTCGAGAATCGATTTTTTACCGTGGACCACTTCATCATGCGACAACGGCAGGACGAAGTTTTCAGTGTAGTTGTAGAGAATCCCGAAGGTCAGTTTATCGTGATG > NC_000913/3571704‑3571996
|
gACACCGTGGTGCCAGTTATCGCCGCCTTCCAACAGATGCCAGTCGAGGCTGGCGTCATGGTTCCACTCGCGGCCCTGGGCAAATTCGTTACCCATGAACAGTAGTTTCTTGCCCGGGAATGCCCACATCCAGCCATAGTAGGCGTGCAgg < 2:752993/151‑1 (MQ=255)
gACACCGTGGTGCCAGTTATCGCCGCCTTCCAACAGATGCCAGTCGAGGCTGGCGTCATGGTTCCACTCGCGGCCCTGGGCAAATTCGTTACCCATGAACAGTAGTCTCTTGCCCGGGAATGCCCACATCCAGCCATAGTAGGCGTGCAgg < 2:374359/151‑1 (MQ=255)
gtggtgCCAGTTATCGCCGCCTTCCAACAGATGCCAGTCGAGGCTGGCGTCATGATTCCACTCGCGGCCCTGGGCAAATTCGTTACCCATGAACAGTAGTTTCTTGCCCGGGAATGCCCACATCCAGCCATAGTAGGCGTGCAGGTTcgcg < 1:1533152/151‑1 (MQ=255)
tggtgCCAGTTATCGCCGCCTTCCAACAGATGCCAGTCGAGGCTGGCGTCATGGTTCCACTCGCGGCCCTGGGCAAATTCGTTACCCATGAACAGTAGTTTCTTGCCCGGGAATGCCCACATCCAGCCATAGTAGGCGTGCAGGTTcgcg > 2:35030/1‑150 (MQ=255)
tggtgCCAGTTATCGCCGCCTTCCAACAGATGCCAGTCGAGGCTGGCGTCATGGTTCCACTCGCGGCCCTGGGCAAATTCGTTACCCATGAACAGTAGTTTCTTGCCCGGGAATGCCCACATCCAGCCATAGTAGGCGTGCAGGTTcgcg > 3:149797/1‑150 (MQ=255)
gtgCCAGTTATCGCCGCCTTCCAACAGATGCCAGTCGAGGCTGGCGTCATGGTTCCACTCGCGGCCCTGGGCAAATTCGTTACCCATGAACAGTAGTTTCTTGCCCGGGAATGCCCACATCCAGCCATAGTAGGCGTGCAGGTTCGCGAAt > 2:848687/1‑151 (MQ=255)
ccAGTTATCGCCGCCTTCCAACAGATGCCAGTCGAGGCTGGCGTCATGGTTCCACTCGCGGCCCTGGGCAAATTCGTTACCCATGAACAGTAGTTTCTTGCCCGGGAATGCCCACATCCAGCCATAGTAGGCGTGCAGGTTCGCGAATTTc < 1:1204235/151‑1 (MQ=255)
aTCGCGGCCTTCCAACAGATGCCAGTCGAGGCTGGCGTCATGGTTCCACTCGCGGCCCTGGGCAAATTCGTTACCCATGAACAGTAGTTTCTTGCCCGGGAATGCCCACATCCAGCCATAGTAGGCGTGCAGGTTCGCGAATTTCTGCCAt > 1:1161698/1‑151 (MQ=255)
aTCGCCGCCTTCCAACAGATGCCAGTCGAGGCTGGCGTCATGGTTCCACTCGCGGCCCTGGGCAAATTCGTTACCCATGAACAGTAGTTTCTTGCCCGGGAATGCCCACATCCAGCCATAGTAGGCGTGCAGGTTCGCGAATTTCTGCCAt > 3:316127/1‑151 (MQ=255)
cgccgcCTTCCAACAGATGCCAGTCGAGGCTGGCGTCATGGTTCCACTCGCGGCCCTGGGCAAATTCGTTACCCATGAACAGTAGTTTCTTGCCCGGGAATGCCCACATCCAGCCATAGTAGGCGTGCAGGTTCGCGAATTTCTGCCATg < 2:990731/150‑1 (MQ=255)
cgccTTCCAACAGATGCCAGTCGAGGCTGGCGTCATGGTTCCACTCGCGGCCCTGGGCAAATTCGTTACCCATGAACAGTAGTTTCTTGCCCGGGAATGCCCACATCCAGCCATAGTAGGCGTGCAGGTTCGCGAATTTCTGCCATGCGTc > 4:597555/1‑151 (MQ=255)
gccTTCCAACAGATGCCAGTCGAGGCTGGCGTCATGGTTCCACTCGCGGCCCTGGGCAAATTCGTTACCCATGAACAGTAGTTTCTTGCCCGGGAATGCCCACATCCAGCCATAGTAGGCGTGCAGGTTCGCGAATTTCTGCCATGCGTCg < 2:655719/151‑1 (MQ=255)
gccTTCCAACAGATGCCAGTCGAGGCTGGCGTCATGGTTCCACTCGCGGCCCTGGGCAAATTCGTTACCCATGAACAGTAGTTTCTTGCCCGGGAATGCCCACATCCAGCCATAGTAGGCGTGCAGGTTCGCGAATTTCTGCCATGCGTCg > 2:164091/1‑151 (MQ=255)
cTTCCAACAGATGCCAGTCGAGGCTGGCGTCATGGTTCCACTCGCGGCCCTGGGCAAATTCGTTACCCATGAACAGTAGTTTCTTGCCCGGGAATGCCCACATCCAGCCATAGAAGGCGTGCAGGTTCGCGCATTTCTGCCATGCGTc > 1:1152357/1‑148 (MQ=255)
tCCAACAGATGCCAGTCGAGGCTGGCGTCATGGTTCCACTCGCGGCCCTGGGCAAATTCGTTACCCATGAACAGTAGTTTCTTGCCCGGGAATGCCCACATCCAGCCATAGTAGGCGTGCAGGTTCGCGAATTTCTGCCATGCGTCGccc < 3:199177/150‑1 (MQ=255)
ccAACAGATGCCAGTCGAGGCTGGCGTCATGGTTCCACTCGCGGCCCTGGGCAAATTCGTTCCCCATGAACAGTAGTTTCTTGCCCGGGAATGCCCACATCCAGCCATAGTAGGCGTGCAGGTTCGCGAATTTCTGCCATGCGTCGccc < 3:290490/149‑1 (MQ=255)
ccAACAGATGCCAGTCGAGGCTGGCGTCATGGTTCCACTCGCGGCCCTGGGCAAATTCGTTACCCATGAACAGTAGTTTCTTGCCCGGGAATGCCCACATCCAGCCATAGTAGGCGTGCAGGTTCGCGAATTTCTGCCATGCGTCGCCCgg > 1:1577002/1‑151 (MQ=255)
aGATGCCAGTCGAGGCTGGCGTCATGGTTCCACTCGCGGCCCTGGGCAAATTCGTTACCCATGAACAGTAGTTTCTTGCCCGGGAATGCCCACATCCAGCCATAGTAGGCGTGCAGGTTCGCGAATTTCTGCCATGCGTCGCCCGGCATGc < 1:1323494/151‑1 (MQ=255)
aTGCCAGTCGAGGCTGGCGTCATGGTTCCACTCGCGGCCCTGGGCAAATTCGTTACCCATGAACAGTAGTTTCTTGCCCGGGAATGCCCACATCCAGCCATAGTAGGCGTGCAGGTTCGCGAATTTCTGCCATGCGTCGCCCGGCATGCgg < 2:1692317/151‑1 (MQ=255)
gCCAGTCGAGGCTGGCGTCATGGTTCCACTCGCGGCGCTGGGCAAATTCGTTACCCATGAACAGTAGTTTCTTGCCCGGGAATGCCCACATCCAGCCATAGTAGGCGTGCAGGTTCGCGAATTTCTGCCATGCGTCGCCCGGCATGCGGTc < 1:418295/151‑1 (MQ=255)
gCCAGTCGAGGCTGGCGTCATGGTTCCACTCGCGGCCCTGGGCAAATTCGTTACCCATGAACAGTAGTTTCTTGCCCGGGAATGCCCACATCCAGCCATAGTAGGCGTGCAGGTTCGCGAATTTCTGCCATGCGTCGCCCGGCATGCGGt < 2:592016/150‑1 (MQ=255)
gCCAGTCGAGGCTGGCGTCATGGTTCCACTCGCGGCCCTGGGCAAATTCGTTACCCATGAACAGTAGTTTCTTGCCCGGGAATGCCCACATCCAGCCATAGTAGGCGTGCAGGTTCGCGAATTTCTGCCATGCGTCGCCCGGCATGCGGTc < 1:777279/151‑1 (MQ=255)
cGAGGCTGGCGTCATGGTTCCACTCGCGGCCCTGGGCAAATTCGTTACCCATGAACAGTAGTTTCTTGCCCGGGAATGCCCACATCCAGCCATAGTAGGCGTGCAGGTTCGCGAATTTCTGCCATGCGTCGCCCGGCATGCGGTCGAGAAt > 1:976918/1‑151 (MQ=255)
gAGGCTGGCGTCATGGTTCCACTCGCGGCCCTGGGCAAATTCGTTACCCATGAACAGTAGTTTCTTGCCCGGGAATGCCCACATCCAGCCATAGTAGGCGTGCAGGTTCGCGAATTTCTGCCATGCGTCGCCCGGCATGCGGTCGAGAATc > 2:1734226/1‑151 (MQ=255)
gAGGCTGGCGTCATGGTTCCACTCGCGGCCCTGGGCAAATTCGTTACCCATGAACAGTAGTTTCTTGCCCGGGAATGCCCACATCCAGCCATAGTAGGCGTGCAGGTTCGCGAATTTCTGCCATGCGTCGCCCGGCATGCGGTCGAGAATc < 2:117987/151‑1 (MQ=255)
ggCGTCATGGTTCCACTCGCGGCCCTGGGCAAATTCGTTACCCATGAACAGTAGTTTCTTGCCCGGGAATGCCCACATCCAGCCATAGTAGGCGTGCAGGTTCGCGAATTTCTGCCATGCGTCGCCCGGCATGCGGTCGAGAATCGAttt < 2:1208193/150‑1 (MQ=255)
cGTCATGGTTCCACTCGCGGCCCTGGGCAAATTCGTTACCCATGAACAGTAGTTTCTTGCCCGGGAATGCCCACATCCAGCCATAGTAGGCGTGCAGGTTCGCGAATTTCTGCCATGCGTCGCCCGGCATGCGGTCGAGAATCGAtttttt < 2:1502348/151‑1 (MQ=255)
cATGGTTCCACTCGCGGCCCTGGGCAAATTCGTTACCCATGAACAGTAGTTTCTTGCCCGGGAATGCCCACATCCAGCCATAGTAGGCGTGCAGGTTCGCGAATTTCTGCCATGCGTCGCCCGGCATGCGGTCGAGAATCGATTTTTTAc < 1:566207/150‑1 (MQ=255)
gTTCCACTCGCGGCCCTGGGCAAATTCGTTACCCATGAACAGTAGTTTCTTGCCCGGGAATGCCCACATCCAGCCATAGTAGGCGTGCAGGTTCGCGAATTTCTGCCATGCGTCGCCCGGCATGCGGTCGAGAATCGATTTTTTACCGTgg < 1:946321/151‑1 (MQ=255)
gTTCCACTCGCGGCCCTGGGCAAATTCGTTACCCATGAACAGTAGTTTCTTGCCCGGGAATGCCCACATCCAGCCATAGTAGGCGTGCAGGTTCGCGAATTTCTGCCATGCGTCGCCCGGCATGCGGTCGAGAATCGATTTTTTACCGTgg < 2:1484233/151‑1 (MQ=255)
ttCCACTCGCGGCCCTGGGCAAATTCGTTACCCATGAACAGTAGTTTCTTGCCCGGGAATGCCCACATCCAGCCATAGTAGGCGTGCAGGTTCGCGAATTTCTGCCATGCGTCGCCCGGCATGCGGTCGAGAATCGATTTTTTCCCGTgg < 1:341394/150‑1 (MQ=255)
cACTCGCGGCCCTGGGCAAATTCGTTACCCATGAACAGTAGTTTCTTGCCCGGGAATGCCCACATCCAGCCATAGTAGGCGTGCAGGTTCGCGAATTTCTGCCATGCGTCGCCCGGCATGCGGTCGAGAATCGATTTTTTACCGTGGAcc > 2:1428762/1‑150 (MQ=255)
cACTCGCGGCCCTGGGCAAATTCGTTACCCATGAACAGTAGTTTCTTGCCCGGGAATGCCCACATCCAGCCATAGTAGGCGTGCAGGTTCGCGAATTTCTGCCATGCGTCGCCCGGCATGCGGTCGAGAATCGATTTTTTACCGTGGACCa < 2:1610799/151‑1 (MQ=255)
aCTCGCGGCCCTGGGCAAATTCGTTACCCATGAACAGTAGTTTCTTGCCCGGGAATGCCCACATCCAGCCATAGTAGGCGTGCAGGTTCGCGAATTTCTGCCATGCGTCGCCCGGCATGCGGTCGAGAATCGATTTTTTACCGTGGACCAc > 2:1353341/1‑151 (MQ=255)
ggCCCTGGGCAAATTCGTTACCCATGAACAGTAGTTTCTTGCCCGGGAATGCCCACATCCAGCCATAGTAGGCGTGCAGGTTCGCGAATTTCTGCCATGCGTCGCCCGGCATGCGGTCGAGAATCGATTTTTTACCGTGGACCACTtcatc < 2:1524408/151‑1 (MQ=255)
ccTGGGCAAATTCGTTACCCATGAACAGTAGTTTCTTGCCCGGGAATGCCCACATCCAGCCATAGTAGGCGTGCAGGTTCGCGAATTTCTGCCATGCGTCGCCCGGCATGCGGTCGAGAATCGATTTTTTACCGTGGACCACTTcatcat < 2:1403308/150‑1 (MQ=255)
ccTGGGCAAATTCGTTACCCATGAACAGTAGTTTCTTGCCCGGGAATGCCCACATCCAGCCATAGTAGGCGTGCAGGTTCGCGAATTTCTGCCATGCGTCGCCCGGCATGCGGTCGAGAATCGATTTTTTACCGTGGACCACTTCATCATg < 1:133516/151‑1 (MQ=255)
cTGGGCAAATTCGTTACCCATGAACAGTAGTTTCTTGCCCGGGAATGCCCACATCCAGCCATAGTAGGCGTGCAGGTTCGCGAATTTCTGCCATGCGTc > 2:1183306/1‑99 (MQ=255)
tGGGCAAATTCGTTACCCATGAACAGTAGTTTCTTGCCCGGGAATGCCCACATCCAGCCATAGTAGGCGTGCAGGTTCGCGAATTTCTGCCATGCGTCGCCCGGCATGCGGTCGAGAATCGATTTTTTACCGTGGACCACTTCATCATGCg > 1:961266/1‑151 (MQ=255)
tGGGCAAATTCGTTACCCATGAACAGTAGTTTCTTGCCCGGGAATGCCCACATCCAGCCATAGTAGGCGTGCAGGTTCGCGAATTTCTGCCATGCGTCGCCCGGCATGCGGTCGAGAATCGATTTTTTACCGTGGACCACTTCATCATGCg > 2:607896/1‑151 (MQ=255)
tGGGCAAATTCGTTACCCATGAACAGTAGTTTCTTGCCCGGGAATGCCCACATCCAGCCATAGTAGGCGTGCAGGTTCGCGAATTTCTGCCATGCGTCGCCCGGCATGCGGTCGAGAATCGATTTTTTACCGTGGACCACTTCATCATGCg > 2:1147210/1‑151 (MQ=255)
cAAATTCGTTACCCATGAACAGTAGTTTCTTGCCCGGGAATGCCCACATCCAGCCATAGTAGGCGTGCAGGTTCGCGAATTTCTGCCATGCGTCGCCCGGCATGCGGTCGAGAATCGATTTTTTACCGTGGACCACTTCATCATGCGACa > 2:939953/1‑150 (MQ=255)
aaaTTCGTTACCCATGAACAGTAGTTTCTTGCCCGGGAATGCCCACATCCAGCCATAGTAGGCGTGCAGGTTCGCGAATTTCTGCCATGCGTCGCCCGGCATGCGGTCg > 3:44689/1‑109 (MQ=255)
aaaTTCGTTACCCATGAACAGTAGTTTCTTGCCCGGGAATGCCCACATCCAGCCATAGTAGGCGTGCAGGTTCGCGAATTTCTGCCATGCGTCGCCCGGCATGCGGTCg < 4:44688/109‑1 (MQ=255)
aaaTTCGTTACCCATGAACAGTAGTTTCTTGCCCGGGAATGCCCACATCCAGCCATAGTAGGCGTGCAGGTTCGCGAATTTCTGCCATGCGTCGCCCGGCATGCGGTCGAGAATCGATTTTTTACCGTGGACCACTTCATCATGCGACAAc < 1:1144316/151‑1 (MQ=255)
aaTTCGTTACCCATGAACAGTAGTTTCTTGCCCGGGAATGCCCACATCCAGCCATAGTAGGCGTGCAGGTTCGCGAATTTCTGCCATGCGTCGCCCGGCATGCGGTCGAGAATCGATTTTTTACCGTGGACCACTTCATCATGCGACAACg > 1:1250682/1‑151 (MQ=255)
aTTCGTTACCCATGAACAGTAGTTTCTTGCCCGGGAATGCCCACATCCAGCCATAGTAGGCGTGCAGGTTCGCGAATTTCTGCCATGCGTCGCCCGGCATGCGGTCGAGAATCGATTTTTTACCGTGGACCACTTCATCATGCGACAACgg < 1:208563/151‑1 (MQ=255)
aTTCGTTACCCATGAACAGTAGTTTCTTGCCCGGGAATGCCCACATCCAGCCATAGTAGGCGTGCAGGTTCGCGAATTTCTGCCATGCGTCGCCCGGCATGCGGTCGAGAATCGATTTTTTACCGTGGACCACTTCATCATGCGACAACgg > 2:1189508/1‑151 (MQ=255)
aTTCGTTACCCATGAACAGTAGTTTCTTGCCCGGGAATGCCCACATCCAGCCATAGTAGGCGTGCAGGTTCGCGAATTTCTGCCATGCGTCGCCCGGCATGCGGTCGAGAATCGATTTTTTACCGTGGACCACTTCATCATGCGACAACgg > 2:328892/1‑151 (MQ=255)
ttCGCTACCCATGTACAGTAGTTTCTTGCTGGGCAATGCCGACATTAAGCCATAGTAAGCGCGCAGGTTCGTTGATTTCTGCCATGCGACGCTCGGCGTGAGGTAGCGAATGGAATTTTTACCGTGGACCACTTCATTATTCGACAACAGc > 1:1205614/1‑151 (MQ=255)
tCGTTACCCATGAACAGTAGTTTCTTGCCCGGGAATGCCCACATCCAGCCATAGTAGGCGTGCAGGTTCGCGAATTTCTGCCATGCGTCGCCCGGCATGCGGTCGAGAATCGATTTTTTACCGTGGACCACTTCATCATGCGACAACGGc > 2:1738191/1‑150 (MQ=255)
cGTTACCCATGAACAGTAGTTTCTTGCCCGGGAATGCCCACATCCAGCCATAGTAGGCGTGCAGGTTCGCGAATTTCTGCCATGCGTCGCCCGGCATGCGGTCGAGAATCGATTTTTTACCGTGGACCACTTCATCATGCGACAACGGCa < 2:1380171/150‑1 (MQ=255)
ttACCCATGAACAGTAGTTTCTTGCCCGGGAATGCCCACAGCCAGCCATAGTAGGCGTGCAGGTTCGCGAATTTCTGCCATGCGTCGCCCGGCATGCGGTCGAGAATCGATTTTTTACCGTGGACCACTTCATCATGCGACAACGGCAgg < 1:1668597/150‑1 (MQ=255)
aCCCATGAACAGTAGTTTCTTGCCCGGGAATGCCCACATCCAGCCATAGTAGGCGTGCAGGTTCGCGAATTTCTGCCATGCGTCGCCCGGCATGCGGTCGAGAATCGATTTTTTACCGTGGACCACTTCATCATGCGACAACGGCAGGAc < 2:605425/150‑1 (MQ=255)
aCCCATGAACAGTAGTTTCTTGCCCGGGAATGCCCACATCCAGCCATAGTAGGCGTGCAGGTTCGCGAATTTCTGCCATGCGTCGCCCGGCATGCGGTCGAGAATCGATTTTTTACCGTGGACCACTTCATCATGCGACAACGGCAGGACg > 1:1196519/1‑151 (MQ=255)
cccATGAACAGTAGTTTCTTGCCCGGGAATGCCCACATCCAGCCATAGTAGGCGTGCAGGTTCGCGAATTTCTGCCATGCGTCGCCCGGCATGCGGTCGAGAATCGATTTTTTACCGTGGACCACTTCATCATGCGACAACGGCAGGACg > 1:171966/1‑150 (MQ=255)
ccATGAACAGTAGTTTCTTGCCCGGGAATGCCCACATCCAGCCATAGTAGGCGTGCAGGTTCGCGAATTTCTGCCATGCGTCGCCCGGCATGCGGTCGAGAATCGATTTTTTACCGTGGACCACTTCATCATGCGACAACGGCAGGACGaa < 2:89590/151‑1 (MQ=255)
cATGAACAGTAGTTTCTTGCCCGGGAATGCCCACATCCAGCCATAGTAGGCGTGCAGGTTCGCGAATTTCTGCCATGCGTCGCCCGGCATGCGGTCGAGAATCGATTTTTTACCGTGGACCACTTCATCATGCGACAACGGCAGGACGa > 2:680007/1‑149 (MQ=255)
aTGAACAGTAGTTTCTTGCCCGGGAATGCCCACATCCAGCCATAGTAGGCGTGCAGGTTCGCGAATTTCTGCCATGCGTCGCCCGGCATGCGGTCGAGAATCGATTTTTTACCGTGGACCACTTCATCATGCGACAACGGCAGGACGAAGt > 2:1559544/1‑151 (MQ=255)
aTGAACAGTAGTTTCTTGCCCGGGAATGCCCACATCCAGCCATAGTAGGCGTGCAGGTTCGCGAATTTCTGCCATGCGTCGCCCGGCATGCGGTCGAGAATCGATTTTTTACCGTGGACCACTTCATCATGCGACAACGGCAGGACGAAGt < 2:1278437/151‑1 (MQ=255)
gAACAGTAGTTTCTTGCCCGGGAATGCCCGCATCCAGCCATAGTAGGCGTGCAGGTTCGCGAATTTCTGCCATGCGTCGCCCGGCATGCGGTCGAGAATCGATTTTTTACCGTGGACCACTTCATCATGCGACAACGGCAGGACGAAGtt < 1:1705893/150‑1 (MQ=255)
gAACAGTAGTTTCTTGCCCGGGAATGCCCACATCCAGCCATAGTAGGCGTGCAGGTTCGCGAATTTCTGCCATGCGTCGCCCGGCATGCGGTCGAGAATCGATTTTTTACCGTGGACCACTTCATCATGCGACAACGGCAGGACGAAGtt < 3:289217/150‑1 (MQ=255)
aaCAGTAGTTTCTTGCCCGGGAATGCCCACATCCAGCCATAGTAGGCGTGCAGGTTCGCGAATTTCTGCCATGCGTCGCCCGGCATGCGGTCGAGAATCGATTTTTTACCGTGGACCACTTCATCATGCGACAACGGCAGGACGAAGtttt > 2:677825/1‑151 (MQ=255)
aCAGTAGTTTCTTGCCCGGGAATGCCCACATCCAGCCATAGTAGGCGTGCAGGTTCGCGAATTTCTGCCATGCGTCGCCCGGCATGCGGTCGAGAATCGATTTTTTACCGTGGACCACTTCATCATGCGACAACGGCAGGACGAAGTTTTc > 2:276670/1‑151 (MQ=255)
tagtTTCTTGCCCGGGAATGCCCACATCCAGCCATAGTAGGCGTGCAGGTTCGCGAATTTCTGCCATGCGTCGCCCGGCATGCGGTCGAGAATCGATTTTTTACCGTGGACCACTTCATCATGCGACAACGGCAGGACGAAGTTTTCAgtg > 1:609599/1‑151 (MQ=255)
tagtTTCTTGCCCGGGAATGCCCACATCCAGCCATAGTAGGCGTGCAGGTTCGCGAATTTCTGCCATGCGTCGCCCGGCATGCGGTCGAGAATCGATTTTTTACCGTGGACCACTTCATCATGCGACAACGGCAGGACGAAGTTTTCAgt > 4:499501/1‑150 (MQ=255)
agtTTCTTGCCCGGGAATGCCCACATCCAGCCATAGTAGGCGTGCAGGTTCGCGAATTTCTGCCATGCGTCGCCCGGCATGCGGTCGAGAATCGATTTTTTACCGTGGACCACTTCATCATGCGACAACGGCAGGACGAAGTTTTCAgtgt > 4:580980/1‑151 (MQ=255)
agtTTCTTGCCCGGGAATGCCCACATCCAGCCATAGTAGGCGTGCAGGTTCGCGAATTTCTGCCATGCGTCGCCCGGCATGCGGTCGAGAATCGATTTTTTACCGTGGACCACTTCATCATGCGACAACGGCAGGACGAAGTTTTCAgtgt > 2:383352/1‑151 (MQ=255)
ttCTTGCCCGGGAATGCCCACATCCAGCCATAGTAGGCGTGCAGGTCCGCGAATTTCTGCCATGCGTCGCCCGGCATGCGGTCGAGAATCGATTTTTTACCGTGGACCACTTCATCATGCGACAACGGCAGGACGAAGTTTTCAGTGTAGt > 2:1449091/1‑151 (MQ=255)
gCCCGGGAATGCCCACATCCAGCCATAGTAGGCGTGCAGGTTCGCGAATTTCTGCCATGCGTCGCCCGGCATGCGGTCGAGAATCGATTTTTTACCGTGGACCACTTCATCATGCGACAACGGCAGGACGAAGTTTTCAGTGTAGTTGTag < 2:770665/151‑1 (MQ=255)
cccGGGAATGCCCACATCCAGCCATAGTAGGCGTGCAGGTTCGCGAATTTCTGCCATGCGTCGCCCGGCATGCGGTCGAGAATCGATTTTTTACCGTGGACCACTTCATCATGCGACAACGGCAGGACGAAGTTTTCAGTGTAGTTGt > 2:813296/1‑148 (MQ=255)
gggAATGCCCACATCCAGCCATAGTAGGCGTGCAGGTTCGCGAATTTCTGCCATGCGTCGCCCGGCATGCGGTCGAGAATCGATTTTTTACCGTGGACCACTTCATCATGCGACAACGGCAGGACGAAGTTTTCAGTGTAGTTGTAgaga > 1:778644/1‑150 (MQ=255)
gggAATGCCCACATCCAGCCATAGTAGGCGTGCAGGTTCGCGAATTTCTGCCATGCGTCGCCCGGCATGCGGTCGAGAATCGATTTTTTACCGTGGACCACTTCATCATGCGACAACGGCAGGACGAAGTTTTCAGTGTAGTTGTAGAGaa < 1:979511/151‑1 (MQ=255)
ggAATGCCCACATCCAGCCATAGTAGGCGTGCAGGTTCGCGAATTTCTGCCATGCGTCGCCCGGCATGCGGTCGAGAATCGATTTTTTACCGTGGACCACTTCATCATGCGACAACGGCAGGACGAAGTTTTCAGTGTAGTTGTAGAGaa > 4:297392/1‑150 (MQ=255)
aaTGGCCACATCCAGCCATAGTAGGCGTGCAGGTTCGCGAATTTCTGCCATGCGTCGCCCGGCATGCGGTCGAGAATCTATTTTTTACCGTGGACCACTTCATCATGCGACAACGGCAGGACGAAGTTTTCAGTGTAGTTGTAgaga < 1:39411/147‑1 (MQ=255)
aaTGCCCACATCCAGCCATAGTAGGCGTGCAGGTTCGCGAATTTCTGCCATGCGTCGCCCGGCATGCGGTCGAGAATCGATTTTTTACCGTGGACCACTTCATCATGCGACAACGGCAGGACGAAGTTTTCAGTGTAGTTGTAGAGAATcc < 2:139580/151‑1 (MQ=255)
aaTGCCCACATCCAGCCATAGTAGGCGTGCAGGTTCGCGAATTTCTGCCATGCGTCGCCCGGCATGCGGTCGAGAATCGATTTTTTACCGTGGACCACTTCATCATGCGACAACGGCAGGACGAAGTTTTCAGTGTAGTTGTAGAGAATcc > 1:386598/1‑151 (MQ=255)
cccACATCCAGCCATAGTAGGCGTGCAGGTTCGCGAATTTCTGCCATGCGTCGCCCGGCATGCGGTCGAGAATCGATTTTTTACCGTGGACCACTTCATCATGCGACAACGGCAGGACGAAGTTTTCAGTGTAGTTGTAGAGAATCCCGaa < 4:299449/151‑1 (MQ=255)
cccACATCCAGCCATAGTAGGCGTGCAGGTTCGCGAATTTCTGCCATGCGTCGCCCGGCATGCGGTCGAGAATCGATTTTTTACCGTGGACCACTTCATCATGCGACAACGGCAGGACGAAGTTTTCAGTGTAGTTGTAGAGAATCCCGa > 1:330310/1‑150 (MQ=255)
ccACATCCAGCCATAGTAGGCGTGCAGGTTCGCGAATTTCTGCCATGCGTCGCCCGGCATGCGGTCGAGAATCGATTTTTTACCGTGGACCACTTCATCATGCGACAACGGCAGGACGAAGTTTTCAGTGTAGTTGTAGAGAATCCCGAAg < 1:472258/151‑1 (MQ=255)
catatccatccCTAGTCGGCGTGCAGGTTCGCGAATTTCTGACATGCGTCGCCCGGCATGCGGTCGAGCATCGATTTTTTACCGTTGACCACTTCATCATGCCAAAACTGCAGGACGAAGTTTTCAGTGTAGTTGTAGAGAATTTCGaa < 1:1047168/146‑1 (MQ=255)
cacaTCCAGCCATAGTAGGCGTGCAGGTTCGCGAATTTCTGCCATGCGTCGCCCGGCATGCGGTCGAGAATCGATTTTTTACCGTGGACCACTTCATCATGCGACAACGGCAGGACGAAGTTTTCAGTGTAGTTGTAGAGAATCCCGAAgg < 1:558398/151‑1 (MQ=255)
cacaTCCAGCCATAGTAGGCGTGCAGGTTCGCGAATTTCTGCCATGCGTCGCCCGGCATGCGGTCGAGAATCGATTTTTTACCGTGGACCACTTCATCATGCGACAACGGCAGGACGAAGTTTTCAGTGTAGTTGTAGAGAATCCCGAAgg < 3:534084/151‑1 (MQ=255)
cacaTCCAGCCATAGTAGGCGTGCAGGTTCGCGAATTTCTGCCATGCGTCGCCCGGCATGCGGTCGAGAATCGATTTTTTACCGTGGACCACTTCATCATGCGACAACGGCAGGACGAAGTTTTCAGTGTAGTTGTAGAGAATCCCGAAgg > 1:405744/1‑151 (MQ=255)
acaTCCAGCCATAGTAGGCGTGCAGGTTCGCGAATTTCTGCCATGCGTCGCCCGGCATGCGGTCGAGAATCGATTTTTTACCGTGGACCACTTCATCATGCGACAACGGCAGGACGAAGTTTTCAGTGTAGTTGTAGAGAATCCCGAAGGt > 1:1649524/1‑151 (MQ=255)
caTCCAGCCATAGTAGGCGTGCAGGTTCGCTAATTTCTGCCATGCGTCGCCCGGCATGCGGTCGAGAATCGATTTTTTACCGTGGACCACTTCATCATGCGACAACGGCAGGACGAAGTTTTCAGTGTAGTTGTAGAGAATCCCGAAGGTc < 1:1003328/151‑1 (MQ=255)
caTCCAGCCATAGTAGGCGTGCAGGTTCGCGAATTTCTGCCATGCGTCGCCCGGCATGCGGTCGAGAATCGATTTTTTACCGTGGACCACTTCATCATGCGACAACGGCAGGACGAAGTTTTCAGTGTAGTTGTAGAGAATCCCGAAGGTc < 1:421382/151‑1 (MQ=255)
ccAGCCATAGTAGGCGTGCAGGTTCGCGAATTTCTGCCATGCGTCGCCCGGCATGCGGTCGAGAATCGATTTTTTACCGTGGACCACTTCATCATGCGACAACGGTAGGACGAAGTTTTCAGTGTAGTTGTAGAGAATCCCGAAGGTCAg < 1:816154/150‑1 (MQ=255)
ccAGCCATAGTAGGCGTGCAGGTTCGCGAATTTCTGCCATGCGTCGCCCGGCATGCGGTCGAGAATCGATTTTTTACCGTGGACCACTTCATCATGCGACAACGGCAGGACGAAGTTTTCAGTGTAGTTGTAGAGAATCCCGAAGGTCAg < 1:785788/150‑1 (MQ=255)
aGCCATAGTAGGCGTGCAGGTTCGCGAATTTCTGCCATGCGTCGCCCGGCATGCGGTCGAGAATCGATTTTTTACCGTGGACCACTTCATCATGCGACAACGGCAGGACGAAGTTTTCAGTGTAGTTGTAGAGAATCCCGAAGGTCAGttt < 1:1615682/151‑1 (MQ=255)
aGCCATAGTAGGCGTGCAGGTTCGCGAATTTCTGCCATGCGTCGCCCGGCATGCGGTCGAGAATCGATTTTTTACCGTGGACCACTTCATCATGCGACAACGGCAGGACGAAGTTTTCAGTGTAGTTGTAGAGAATCCCGAAGGTCAGttt < 1:1086923/151‑1 (MQ=255)
aGCCATAGTAGGCGTGCAGGTTCGCGAATTTCTGCCATGCGTCGCCCGGCATGCGGTCGAGAATCGATTTTTTACCGTGGACCACTTCATCATGCGACAACGGCAGGACGAAGTTTTCAGTGTAGTTGTAGAGAATCCCGAAGGTCAGttt < 1:173943/151‑1 (MQ=255)
aGCCATAGTAGGCGTGCAGGTTCGCGAATTTCTGCCATGCGTCGCCCGGCATGCGGTCGAGAATCGATTTTTTACCGTGGACCACTTCATCATGCGACAACGGCAGGACGAAGTTTTCAGTGTAGTTGTAGAGAATCCCGAAGGTCAGttt > 2:749794/1‑151 (MQ=255)
ccATAGTAGGCGTGCAGGTTCGCGAATTTCTGCCATGCGTCGCCCGGCATGCGGTCGAGAATCGATTTTTTACCGTGGACCACTTCATCATGCGACAACGGCAGGACGAAGTTTTCAGTGTAGTTGTAGAGAATCCCGAAGGTCAGTTTAt < 2:1594101/151‑1 (MQ=255)
aTAGTAGGCGTGCAGGTTCGCGAATTTCTGCCATGCGTCGCCCGGCATGCGGTCGAGAATCGATTTTTTACCGTGGACCACTTCATCATGCGACAACGGCAGGACGAAGTTTTCAGTGTAGTTGTAGAGAATCCCGAAGGTCAGTTTATCg > 1:1012377/1‑151 (MQ=255)
gtagGCGTGCAGGTTCGCGAATTTCTGCCATGCGTCGCCCGGCATGCGGTCGAGAATCGATTTTTTACCGTGGACCACTTCATCATGCGACAACGGCAGGACGAAGTTTTCAGTGTAGTTGTAGAGAATCCCGAAGGTCAGTTTATCGtga < 2:340645/151‑1 (MQ=255)
gtagGCGTGCAGGTTCGCGAATTTCTGCCATGCGTCGCCCGGCATGCGGTCGAGAATCGATTTTTTACCGTGGACCACTTCATCATGCGACAACGGCAGGACGAAGTTTTCAGTGTAGTTGTAGAGAATCCCGAAGGTCAGTTTATCGtg > 1:938380/1‑150 (MQ=255)
tagGCGTGCAGGTTCGCGAATTTCTGCCATGCGTCGCCCGGCATGCGGTCGAGAATCGATTTTTTACCGTGGACCACTTCATCATGCGACAACGGCAGGACGAAGTTTTCAGTGTAGTTGTAGAGAATCCCGAAGGTCAGTTTATCGtgat > 2:1666684/1‑151 (MQ=255)
tagGCGTGCAGGTTCGCGAATTTCTGCCATGCGTCGCCCGGCATGCGGTCGAGAATCGATTTTTTACCGTGGACCACTTCATCATGCGACAACGGCAGGACGAAGTTTTCAGTGTAGTTGTAGAGAATCCCGAAGGTCAGTTTATCGtgat > 2:559940/1‑151 (MQ=255)
ggCGTGCAGGTTCGCGAATTTCTGCCATGCGTCGCCCGGCATGCGGTCGAGAATCGATTTTTTACCGTGGACCACTTCATCATGCGACAACGGCAGGACGAAGTTTTCAGTGTAGTTGTAGAGAATCCCGAAGGTCAGTTTATCGtgatg > 3:410147/1‑150 (MQ=255)
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TGGACACCGTGGTGCCAGTTATCGCCGCCTTCCAACAGATGCCAGTCGAGGCTGGCGTCATGGTTCCACTCGCGGCCCTGGGCAAATTCGTTACCCATGAACAGTAGTTTCTTGCCCGGGAATGCCCACATCCAGCCATAGTAGGCGCGCAGGTTCGCGAATTTCTGCCATGCGTCGCCCGGCATGCGGTCGAGAATCGATTTTTTACCGTGGACCACTTCATCATGCGACAACGGCAGGACGAAGTTTTCAGTGTAGTTGTAGAGAATCCCGAAGGTCAGTTTATCGTGATG > NC_000913/3571704‑3571996
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
