Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F50 I1 R1 157 93.7 2947622 98.1% 2891617 150.3

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,928,879 A→G V242A (GTG→GCG)  viaA ← stimulator of RavA ATPase activity; von Willebrand factor domain protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,928,8790AG98.0% 371.0 / ‑4.2 101V242A (GTG→GCG) viaAstimulator of RavA ATPase activity; von Willebrand factor domain protein
Reads supporting (aligned to +/- strand):  ref base A (1/1);  new base G (55/44);  total (56/45)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.98e-01

Only 100 of 105 total aligned reads displayed.

AGCAACTGTTTTTCCACCAGCCGACGGTAAAACTCATACTCCAGTTCCGTTATCCCTAGTGTCGCCAGTTCTGGCGGCAGGAGACGTAAAATATCATCGCTTTGTTGCAGACCATCAACCTGCTCAGGAACCGTCGCCGGTTCGCGCACCATGGTGCGGAAGGTTTCCATCTGCGCATCGTTGCGCGGTATTGATTTGGCTTCCCGAGAACGCCCCAGCTGCTCTGCCAGGCGTTTCAGTTCCGGCTGTTCGTTAAGAAATTCACCGTATTTCACAATCAACTGATAGTCGCCAC  >  NC_000913/3928732‑3929026
                                                                                                                                                   |                                                                                                                                                   
aGCAACTGTTTTTCCACCAGCCGACGGTAAAACTCATACTCCAGTTCCGTTATCCCTAGTGTCGCCAGTTCTGGCGGCAGGAGACGTAAAATATCATCGCTTTGTTGCAGACCATCAACCTGCTCAGGAACCGTCGCCGGTTCGCGCGcc                                                                                                                                                   >  2:1111543/1‑150 (MQ=255)
aGCAACTGTTTTTCCACCAGCCGACGGTAAAACTCATACTCCAGTTCCGTTATCCCTAGTGTCGCCAGTTCTGGCGGCAGGAGACGTAAAATATCATCGCTTTGTTGCAGACCATCAACCTGCTCAGGAACCGTCGCCGGTTCGCGCGcc                                                                                                                                                   >  1:641731/1‑150 (MQ=255)
 gCAACTGTTTTTCCACCAGCCGACGGTAAAACTCATACTCCAGTTCCGTTATCCCTAGTGTCGCCAGTTCTGGCGGCAGGAGACGTAAAATATCATCGCTTTGTTGCAGACCATCAACCTGCTCAGGAACCGTCGCCGGTTCGCGCGCCAt                                                                                                                                                 >  2:101942/1‑151 (MQ=255)
   aaCTGTTTTTCCACCAGCCGACGGTAAAACTCATACTCCAGTTCCGTTATCCCTAGTGTCGCCAGTTCTGGCGGCAGGAGACGTAAAATATCATCGCTTTGTTGCAGACCATCAACCTGCTCAGGAACCGTCGCCGGTTCGCGCGCCATgg                                                                                                                                               <  1:876848/151‑1 (MQ=255)
    aCTGTTTTTCCACCAGCCGACGGTAAAACTCATACTCCAGTTCCGTTATCCCTAGTGTCGCCAGTTCTGGCGGCAGGAGACGTAAAATATCATCGCTTTGTTGCAGACCATCAACCTGCTCAGGAACCGTCGCCGGTTCGCGCGCCATGGt                                                                                                                                              >  2:826065/1‑151 (MQ=255)
    aCTGTTTTTCCACCAGCCGACGGTAAAACTCATACTCCAGTTCCGTTATCCCTAGTGTCGCCAGTTCTGGCGGCAGGAGACGTAAAATATCATCGCTTTGTTGCAGACCATCAACCTGCTCAGGAACCGTCGCCGGTTCGCGCGCCATGGt                                                                                                                                              <  2:1455396/151‑1 (MQ=255)
       gTTTTTCCACCAGCCGACGGTAAAACTCATACTCCAGTTCCGTTATCCCTAGTGTCGCCAGTTCTGGCGGCAGGAGACGTAAAATATCATCGCTTTGTTGCAGACCATCAACCTGCTCAGGAACCGTCGCCGGTTCGCGCGCCATGGTg                                                                                                                                             <  1:1025854/149‑1 (MQ=255)
            tCCACCAGCCGACGGTAAAACTCATACTCCAGTTCCGTTATCCCTAGTGTCGCCAGTTCTGGCGGCAGGAGACGTAAAATATCATCGCTTTGTTGCAGACCATCAACCTGCTCAGGAACCGTCGCCGGTTCGCGCGCCATGGTGCGGAAgg                                                                                                                                      >  2:642186/1‑151 (MQ=255)
             ccaccaGCCGACGGTAAAACTCATACTCCAGTTCCGTTATCCCTAGTGTCGCCAGTTCTGGCGGCAGGAGACGTAAAATATCGTCGCTTTGTTGCAGACCATCAACCTGCTCAGGAACCGTCGCCGGTTCGCGCGCCATGGTGCGGAAGGt                                                                                                                                     >  1:38225/1‑151 (MQ=255)
                ccaGCCGACGGTAAAACTCATACTCCAGTTCCGTTATCCCTAGTGTCGCCAGTTCTGGCGGCAGGAGACGTAAAATATCATCGCTTTGTTGCAGACCATCAACCTGCTCAGGAACCGTCGCCGGTTCGCGCGCCATGGTGCGGAAGGTTTc                                                                                                                                  >  2:1346751/1‑151 (MQ=255)
                ccaGCCGACGGTAAAACTCATACTCCAGTTCCGTTATCCCTAGTGTCGCCAGTTCTGGCGGCAGGAGACGTAAAATATCATCGCTTTGTTGCAGACCATCAACCTGCTCAGGAACCGTCGCCGGTTCGCGCGCCATGGTGCGGAAGGTTTc                                                                                                                                  <  2:1394564/151‑1 (MQ=255)
                ccaGCCGACGGTAAAACTCATACTCCAGTTCCGTTATCCCTAGTGTCGCCAGTTCTGGCGGCAGGAGACGTAAAATATCATCGCTTTGTTGCAGACCATCAACCTGCTCAGGAACCGTCGCCGGTTCGCGCGCCATGGTGCGGAAGGTTTc                                                                                                                                  >  2:55652/1‑151 (MQ=255)
                  aGCCGACGGTAAAACTCATACTCCAGTTCCGTTATCCCTAGTGTCGCCAGTTCTGGCGGCAGGAGACGTAAAATATCATCGCTTTGTTGCAGACCATCAACCTGCTCAGGAACCGTCGCCGGTTCGCGCGCCATGGTGCGGAAGGTTTcc                                                                                                                                 >  1:876377/1‑150 (MQ=255)
                  aGCCGACGGTAAAACTCATACTCCAGTTCCGTTATCCCTAGTGTCGCCAGTTCTGGCGGCAGGAGACGTAAAATATCATCGCTTTGTTGCAGACCATCAACCTGCTCAGGAACCGTCGCCGGTTCGCGCGCCATGGTGCGGAAGGTTTcc                                                                                                                                 >  1:394368/1‑150 (MQ=255)
                     cGACGGTAAAACTCATACTCCAGTTCCGTTATCCCTAGTGTCGCCAGTTCTGGCGGCAGGAGACGTAAAATATCATCGCTTTGTTGCAGACCATCAACCTGCTCAGGAACCGTCGCCGGTTCGCGCGCCATGGTGCGGAAGGTTTCCATCt                                                                                                                             <  1:256028/151‑1 (MQ=255)
                      gACGGTAAAACTCATACTCCAGTTCCGTTATCCCTAGTGTCGCCAGTTCTGGCGGCAGGAGACGTAAAATATCATCGCTTTGTTGCAGACCATCAACCTGCTCAGGAACCGTCGCCGGTTCGCGCGCCATGGTGCGGAAGGTTTCCATCTg                                                                                                                            >  1:1143492/1‑151 (MQ=255)
                      gACGGTAAAACTCATACTCCAGTTCCGTTATCCCTAGTGTCGCCAGTTCTGGCGGCAGGAGACGTAAAATATCATCGCTTTGTTGCAGACCATCAACCTGCTCAGGAACCGTCGCCGGTTCGCGCGCCATGGTGCGGAAGGTTTCCATCTg                                                                                                                            >  1:400007/1‑151 (MQ=255)
                               aCTCATACTCCAGTTCCGTTATCCCTAGTGTCGCCAGTTCTGGCGGCAGGAGACGTAAAATATCATCGCTTTGTTGCAGACCATCAACCTGCTCAGGAACCGTCGCCGGTTCGCGCGCCATGGTGCGGAAGGTTTCCATCTGCGCATCGtt                                                                                                                   >  1:1264782/1‑151 (MQ=255)
                               aCTCATACTCCAGTTCCGTTATCCCTAGTGTCGCCAGTTCTGGCGGCAGGAGACGTAAAATATCATCGCTTTGTTGCAGACCATCAACCTGCTCAGGAACCGTCGCCGGTTCGCGCGCCATGGTGCGGAAGGTTTCCATCTGCGCATCGtt                                                                                                                   >  2:903845/1‑151 (MQ=255)
                                  cATACTCCAGTTCCGTTATCCCTAGTGTCGCCAGTTCTGGCGGCAGGAGACGTAAAATATCATCGCTTTGTTGCAGACCATCAACCTGCTCAGGAACCGTCGCCGGTTCGCGCGCCATGGTGCGGAAGGTTTCCATCTGCGCATCGTTgc                                                                                                                 <  2:914130/150‑1 (MQ=255)
                                   aTACTCCAGTTCCGTTATCCCTAGTGTCGCCAGTTCTGGCGGCAGGAGACGTAAAATATCATCGCTTTGTTGCAGACCATCAACCTGCTCAGGAACCGTCGCCGGTTCGCGCGCCATGGTGCGGAAGGTTTCCATCTGCGCATCGTTgcgc                                                                                                               >  2:739613/1‑151 (MQ=255)
                                   aTACTCCAGTTCCGTTATCCCTAGTGTCGCCAGTTCTGGCGGCAGGAGACGTAAAATATCATCGCTTTGTTGCAGACCATCAACCTGCTCAGGAACCGTCGCCGGTTCGCGCGCCATGGTGCGGAAGGTTTCCATCTGCGCATCGTTgcgc                                                                                                               >  2:1086825/1‑151 (MQ=255)
                                     ccTCCAGTTCCGTTATCCCTAGTGTCGCCAGTTCTGGCGGCAGGAGACGTAAAATATCATCGCTTTGTTGCAGACCATCAACCTGCTCAGGAACCGTCGCCGGTTCGCGCGCCATGGTGCGGAAGGTTTCCATCTGCGCATCGTTGCGCgg                                                                                                             >  2:1124791/2‑151 (MQ=255)
                                     aCTCCAGTTCCGTTATCCCTAGTGTCGCCAGTTCTGGCGGCAGGAGACGTAAAATATCATCGCTTTGTTGCAGACCATCAACCTGCTCAGGAACCGTCGCCGGTTCGCGCGCCATGGTGCGGAAGGTTTCCATCTGCGCATCGTTGcgcg                                                                                                              <  1:147697/150‑1 (MQ=255)
                                        ccAGTTCCGTTATCCCTAGTGTCGCCAGTTCTGGCGGCAGGAGACGTAAAATATCATCGCTTTGTTGCAGACCATCAACCTGCTCAGGAACCGTCGCCGGTTCGCGCGCCATGGTGCGGAAGGTTTCCATCTGCGCATCGTTGCGCGGt                                                                                                            <  1:1047060/149‑1 (MQ=255)
                                        ccAGTTCCGTTATCCCTAGTGTCGCCAGTTCTGGCGGCAGGAGACGTAAAATATCATCGCTTTGTTGCAGACCATCAACCTGCTCAGGAACCGTCGCCGGTTCGCGCGCCATGGTGCGGAAGGTTTCCATCTGCGCATCGTTGCGCGGTAt                                                                                                          >  1:1145260/1‑151 (MQ=255)
                                         cAGTTCCGTTATCCCTAGTGTCGCCAGTTCTGGCGGCAGGAGACGTAAAATATCATCGCTTTGTTGCAGACCATCAACCTGCTCAGGAACCGTCGCCGGTTCGCGCGCCATGGTGCGGAAGGTTTCCATCTGCGCATCGTTGCGCGGTAtt                                                                                                         <  1:47985/151‑1 (MQ=255)
                                          aGTTCCGTTATCCCTAGTGTCGCCAGTTCTGGCGGCAGGAGACGTAAAATATCATCGCTTTGTTGCAGACCATCAACCTGCTCAGGAACCGTCGCCGGTTCGCGCGCCATGGTGCGGAAGGTTTCCATCTGCGCATCGTTGCGCGGTATTg                                                                                                        >  2:791402/1‑151 (MQ=255)
                                           gTTCCGTTATCCCTAGTGTCGCCAGTTCTGGCGGCAGGAGACGTAAAATATCATCGCTTTGTTGCAGACCATCAACCTGCTCAGGAACCGTCGCCGGTTCGCGCGCCATGGTGCGGAAGGTTTCCATCTGCGCATCGTTGCGCGGTATTGa                                                                                                       <  2:789019/151‑1 (MQ=255)
                                              ccGTTATCCCTAGTGTCGCCAGTTCTGGCGGCAGGAGACGTAAAATATCATCGCTTTGTTGCAGACCATCAACCTGCTCAGGAACCGTCGCCGGTTCGCGCGCCATGGTGCGGAAGGTTTCCATCTGCGCATCGTTGCGCGGTATTGAttt                                                                                                    <  1:1022045/151‑1 (MQ=255)
                                              ccGTTATCCCTAGTGTCGCCAGTTCTGGCGGCAGGAGACGTAAAATATCATCGCTTTGTTGCAGACCATCAACCTGCTCAGGAACCGTCGCCGGTTCGCGCGCCATGGTGCGGAAGGTTTCCATCTGCGCATCGTTGCGCGGTATTGAttt                                                                                                    <  1:642259/151‑1 (MQ=255)
                                                   aTCCCTAGTGTCGCCAGTTCTGGCGGCAGGAGACGTAAAATATCATCGCTTTGTTGCAGACCATCAACCTGCTCAGGAACCGTCGCCGGTTCGCGCGCCATGGTGCGGAAGGTTTCCATCTGCGCATCGTTGCGCGGTATTGATTTGGCtt                                                                                               <  1:272352/151‑1 (MQ=255)
                                                    tCCCTAGTGTCGCCAGTTCTGGCGGCAGGAGACGTAAAATATCATCGCTTTGTTGCAGACCATCAACCTGCTCAGGAACCGTCGCCGGTTCGCGCGCCATGGTGCGGAAGGTTTCCATCTGCGCATCGTTGCGCGGTATTGATTTGGCTTc                                                                                              >  1:187988/1‑151 (MQ=255)
                                                     cccTAGTGTCGCCAGTTCTGGCGGCAGGAGACGTAAAATATCATCGCTTTGTTGCAGACCATCAACCTGCTCAGGAACCGTCGCCGGTTCGCGCGCCATGGTGCGGAAGGTTTCCATCTGCGCATCGTTGCGCGGTATTGATTTGGCTTcc                                                                                             <  2:1121628/151‑1 (MQ=255)
                                                        tAGTGTCGCCAGTTCTGGCGGCAGGAGACGTAAAATATCATCGCTTTGTTGCAGACCATCAACCTGCTCAGGAACCGTCGCCGGTTCGCGCGCCATGGTGCGGAAGGTTTCCATCTGCGCATCGTTGCGCGGTATTGATTTGGCTTCCCg                                                                                           >  1:546665/1‑150 (MQ=255)
                                                          gtgtCGCCAGTTCTGGCGGCAGGAGACGTAAAATATCATCGCTTTGTTGCAGACCATCAACCTGCTCAGGAACCGTCGCCGGTTCGCGCGCCATGGTGCGGAAGGTCTCCAGCTGCGCATCGTTGCGCGGTATTGATTTGGCTTCCCgaga                                                                                        <  1:1019505/151‑1 (MQ=255)
                                                            gtCGCCAGTTCTGGCGGCAGGAGACGTAAAATATCATCGCTTTGTTGCAGACCATCAACCTGCTCAGGAACCGTCGCCGGTTCGCGCGCCATGGTGCGGAAGGTTTCCATCTGCGCATCGTTGCGCGGTATTGATTTGGCTTCCCGAGAAc                                                                                      <  1:1427248/151‑1 (MQ=255)
                                                            ggcGCCAGTTCTGGCGGCAGGAGACGTAAAATATCATCGCTTTGTTGCAGACCATCAACCTGCTCAGGAACCGTCGCCGGTTCGCGCGCCATGGTGCGGAAGGTTTCCATCTGCGCATCGTTGCGCGGTATTGATTTGGCTTCCCGAGAAc                                                                                      <  2:1381482/149‑1 (MQ=255)
                                                             tCGCCAGTTCTGGCGGCAGGAGACGTAAAATATCATCGCTTTGTTGCAGACCATCAACCTGCTCAGGAACCGTCGCCTGTTCGCGCGCCATGGTGCGGGAGGTTTCCATCTGCGCATCGTTGCGCGGTATTGATTTGGCTTCCCGAGAAc                                                                                      >  2:223251/1‑150 (MQ=255)
                                                             tCGCCAGTTCTGGCGGCAGGAGACGTAAAATATCATCGCTTTGTTGCAGACCATCAACCTGCTCAGGAACCGTCGCCGGTTCGCGCGCCATGGTGCGGAAGGTTTCCATCTGCGCATCGTTGCGCGGTATTGATTTGGCTTCCCGAGAAc                                                                                      >  1:747766/1‑150 (MQ=255)
                                                               gCCAGTTCTGGCGGCAGGAGACGTAAAATATCATCGCTTTGTTGCAGACCATCAACCTGCTCAGGAACCGTCGCCGGTTCGCGCGCCATGGTGCGGAAGGTTTCCATCTGCGCATCGTTGCGCGGTATTGATTTGGCTTCCCGAGAACGcc                                                                                   >  2:957271/1‑151 (MQ=255)
                                                                ccAGTTCTGGCGGCAGGAGACGTAAAATATCATCGCTTTGTTGCAGACCATCAACCTGCTCAGGAACCGTCGCCGGTTCGCGCGCCATGGTGCGGACGGGTTCCATCTGCGCATCGTTGCGCGGTATTGATTTGGCTTCCCGAGAACGccc                                                                                  >  2:912317/1‑151 (MQ=255)
                                                                    ttCTGGCGGCAGGAGACGTAAAATATCATCGCTTTGTTGCAGACCATCAACCTGCTCAGGAACCGTCGCCGGTTCGCGCGCCATGGTGCGGAAGGTTTCCATCTGCGCATCGTTGCGCGGTATTGATTTGGCTTCCCGAGAACGCCCCAgc                                                                              >  2:894709/1‑151 (MQ=255)
                                                                    ttCTGGCGGCAGGAGACGTAAAATATCATCGCTTTGTTGCAGACCATCAACCTGCTCAGGAACCGTCGCCGGTTCGCGCGCCATGGTGCGGAAGGTTTCCATCTGCGCATCGTTGCGCGGTATTGATTTGGCTTCCCGAGAACGCCCCAgc                                                                              >  2:325777/1‑151 (MQ=255)
                                                                        ggcggcAGGAGACGTAAAATATCATCGCTTTGTTGCAGACCATCAACCTGCTCAGGAACCGTCGCCGGTTCGCGCGCCATGGTGCGGAAGGTTTCCATCTGCGCATCGTTGCGCGGTATTGATTTGGCTTCCCGAGAACGCCCCAgctg                                                                            <  2:1143396/149‑1 (MQ=255)
                                                                        ggcggcAGGAGACGTAAAATATCATCGCTTTGTTGCAGACCATCAACCTGCTCAGGAACCGTCGCCGGTTCGCGCGCCATGGTGCGGAAGGTTTCCATCTGCGCATCGTTGCGCGGTATTGATTTGGCTTCCCGAGAACGCCCCAgct                                                                             <  2:394314/148‑1 (MQ=255)
                                                                         gcggcAGGAGACGTAAAATATCATCGCTTTGTTGCAGACCATCAACCTGCTCAGGAACCGTCGCCGGTTCGCGCGCCATGGTGCGGAAGGTTTCCATCTGCGCATCGTTGCGCGGTATTGATTTGGCTTCCCGAGAACGCCCCAGCTGctc                                                                         <  2:129674/151‑1 (MQ=255)
                                                                         gcggcAGGAGACGTAAAATATCATCGCTTTGTTGCAGACCATCAACCTGCTCAGGAACCGTCGCCGGTTCGCGCGCCATGGTGCGGAAGGTTTCCATCTGCGCATCGTTGCGCGGTATTGATTTGGCTTCCCGAGAACGCCCCAGCTGctc                                                                         <  2:1138480/151‑1 (MQ=255)
                                                                           ggcAGGAGACGTAAAATATCATCGCTTTGTTGCAGACCATCAACCTGCTCAGGAACCGTCGCCGGTTCGCGCGCCATGGTGCGGAAGGTTTCCATCTGCGCATCGTTGCGCGGTATTGATTTGGCTTCCCGAGAACGCCCCAGCTGCTCTg                                                                       >  1:352125/1‑151 (MQ=255)
                                                                            gcAGGAGACGTAAAATATCATCGCTTTGTTGCAGACCATCAACCTGCTCAGGAACCGTCGCCGGTTCGCGCGCCATGGTGCGGAAGGTTTCCATCTGCGCATCGTTGCGCGGTATTGATTTGGCTTCCCGAGAACGCCCCAGCTGCTCTGc                                                                      >  1:1004195/1‑151 (MQ=255)
                                                                             cAGGAGACGTAAAATATCATCGCTTTGTTGCAGACCATCAACCTGCTCAGGAACCGTCGCCGGTTCGCGCGCCATGGTGCGGAAGGTTTCCATCTGCGCATCGTTGCGCGGTATTGATTTGGCTTCCCGAGAACGCCCCAGCTGCTCTGcc                                                                     <  2:1097149/151‑1 (MQ=255)
                                                                                  gaCGTAAAATATCATCGCTTTGTTGCAGACCATCAACCTGCTCAGGAACCGTCGCCGGTTCGCGCGCCATGGTGCGGAAGGTTTCCATCTGCGCATCGTTGCGCGGTATTGATTTGGCTTCCCGAGAACGCCCCAGCTGCTCTGCCAGGCg                                                                <  2:928915/151‑1 (MQ=255)
                                                                                    cGTAAAATATCATCGCTTTGTTGCAGACCATCAACCTGCTCAGGAACCGTCGCCGGTTCGCGCGCCATGGTGCGGAAGGTTTCCATCTGCGCATCGTTGCGCGGTATTGATTTGGCTTCCCGAGAACGCCCCAGCTGCTCTGCCAGGCGtt                                                              <  1:331132/151‑1 (MQ=255)
                                                                                      tAAAATATCATCGCTTTGTTGCAGACCATCAACCTGCTCAGGAACCGTCGCCGGTTCGCGCGCCATGGTGCGGAAGGTTTCCATCTGCGCATCGTTGCGCGGTATTGATTTGGCTTCCCGAGAACGCCCCAGCTGCTCTGCCAGGCGTTTc                                                            >  2:1401876/1‑151 (MQ=255)
                                                                                       aaaaTATCATCGCTTTGTTGCAGACCATCAACCTGCTCAGGAACCGTCGCCGGTTCGCGCGCCATGGTGCGGAAGGTTTCCATCTGCGCATCGTTGCGCGGTATTGATTTGGCTTCCCGAGAACGCCCCAGCTGCTCTGCCAGGCGTTTc                                                            >  2:575340/1‑150 (MQ=255)
                                                                                       aaaaTATCATCGCTTTGTTGCAGACCATCAACCTGCTCAGGAACCATCGCCGGTTCGCGCGCCATGGTGCGGAAGGTTTCCATCTGCGCATCGTTGCGCGGTATTGATTTGGCTTCCCGAGAACGCCCCAGCTGCTCTGCCAGGCGTTTc                                                            <  1:418723/150‑1 (MQ=255)
                                                                                         aaTATCATCGCTTTGTTGCAGACCATCAACCTGCTCAGGAACCGTCGCCGGTTCGCGCGCCATGGTGCGGAAGGTTTCCATCTGCGCATCGTTGCGCGGTATTGATTTGGCTTCCCGAGAACGCCCCAGCTGCTCTGCCAGGCGTTTCAGt                                                         >  1:466108/1‑151 (MQ=255)
                                                                                          atatCATCGCTTTGTTGCAGACCATCAACCTGCTCAGGAACCGTCGCCGGTTCGCGCGCCATGGTGCGGAAGGTTTCCATCTGCGCATCGTTGCGCGGTATTGATTTGGCTTCCCGAGAACGCCCCAGCTGCTCTGCCAGGCGTTTCAGtt                                                        <  2:1376417/151‑1 (MQ=255)
                                                                                            atcatcGCTTTGTTGCAGACCATCAACCTGCTCAGGAACCGTCGCCGGTTCGCGCGCCATGGTGCGGAAGGTTTCCATCTGCGCATCGTTGCGCGGTATTGATTTGGCTTCCCGAGAACGCCCCAGCTGCTCTGCCAGGCGTTTCAGTTcc                                                      <  1:606043/151‑1 (MQ=255)
                                                                                             tcatcGCTTTGTTGCAGACCATCAACCTGCTCAGGAACCGTCGCCGGTTCGCGCGCCATGGTGCGGAAGGTTTCCATCTGCGCATCGTTGCGCGGTATTGATTTGGCTTCCCGAGAACGCCCCAGCTGCTCTGCCAGGCGTTTCAGTTCCg                                                     >  2:752521/1‑151 (MQ=255)
                                                                                                 cGCTTTGTTGCAGACCATCAACCTGCTCAGGAACCGTCGCCGGTTCGCGCGCCATGGTGCGGAAGGTTTCCATCTGCGCATCGTTGCGCGGTATTGATTTGGCTTCCCGAGAACGCCCCAGCTGCTCTGCCAGGCGTTTCAGTTCCGGCt                                                  <  1:1083081/150‑1 (MQ=255)
                                                                                                 cGCTTTGTTGCAGACCATCAACCTGCTCAGGAACCGTCGCCGGTTCGCGCGCCATGGTGCGGAAGGTTTCCATCTGCGCATCGTTGCGCGGTATTGATTTGGCTTCCCGAGAACGCCCCAGCTGCTCTGCCAGGCGTTTCAGTTCCGGCTg                                                 <  2:641657/151‑1 (MQ=255)
                                                                                                 cGCTTTGTTGCAGACCATCAACCTGCTCAGGAACCGTCGCCGGTTCGCGCGCCATGGTGCGGAAGGTTTCCATCTGCGCATCGTTGCGCGGTATTGATTTGGCTTCCCGAGAACGCCCCAGCTGCTCTGCCAGGCGTTTCAGTTCCGGCTg                                                 <  1:185379/151‑1 (MQ=255)
                                                                                                    tttGTTGCAGACCATCAACCTGCTCAGGAACCGTCGCCGGTTCGCGCGCCATGGTGCGGAAGGTTTCCATCTGCGCATCGTTGCGCGGTATTGATTTGGCTTCCCGAGAACGCCCCAGCTGCTCTGCCAGGCGTTTCAGTTCCGGCTGTTc                                              >  1:545579/1‑151 (MQ=255)
                                                                                                     ttgttgCAGACCATCAACCTGCTCAGGAACCGTCGCCGGTTCGCGCGCCATGGTGCGGAAGGTTTCCATCTGCGCATCGTTGCGCGGTATTGATTTGGCTTCCCGAGAACGCCCCAGCTGCTCTGCCAGGCGTTTCAGTTCCGGCTGTTCg                                             >  1:885669/1‑151 (MQ=255)
                                                                                                        ttgCAGACCATCAACCTGCTCAGGAACCGTCGCCGGTTCGCGCGCCATGGTGCGGAAGGTTTCCATCTGCGCATCGTTGCGCGGTATTGATTTGGCTTCCCGAGAACGCCCCAGCTGCTCTGCCAGGCGTTTCAGTTCCGGCTGTTCGtt                                           >  2:539229/1‑150 (MQ=255)
                                                                                                         tgCAGACCATCAACCTGCTCAGGAACCGTCGCCGGTTCGCGCGCCATGGTGCGGAAGGTTTCCATCTGCGCATCGTTGCGCGGTATTGATTTGGCTTCCCGAGAACGCCCCAGCTGCTCTGCCAGGCGTTTCAGTTCCGGCTGTTCGTTa                                          <  2:399949/150‑1 (MQ=255)
                                                                                                           cAGACCATCAACCTGCTCAGGAACCGTCGCCGGTTCGCGCGCCATGGTGCGGAAGGTTTCCATCTGCGCATCGTTGCGCGGTATTGATTTGGCTTCCCGAGAACGCCCCAGCTGCTCTGCCAGGCGTTTCAGTTCCGGCTGTTCGTTAAGa                                       <  1:101957/151‑1 (MQ=255)
                                                                                                              aCCATCAACCTGCTCAGGAACCGTCGCCGGTTCGCGCGCCATGGTGCGGAAGGTTTCCATCTGCGCATCGTTGCGCGGTATTGATTTGGCTTCCCGAGAACGCCCCAGCTGCTCTGCCAGGCGTTTCAGTTCCGGCTGTTCGTTAAGAAAt                                    >  1:440815/1‑151 (MQ=255)
                                                                                                               ccATCAACCTGCTCAGGAACCGTCGCCGGTTCGCGCGCCATGGTGCGGAAGGTTTCCATCTGCGCATCGTTGCGCGGTATTGATTTGGCTTCCCGAGAACGCCCCAGCTGCTCTGCCAGGCGTTTCAGTTCCGGCTGTTCGTTAAGAAAtt                                   <  1:690107/151‑1 (MQ=255)
                                                                                                               ccATCAACCTGCTCAGGAACCGTCGCCGGTTCGCGCGCCATGGTGCGGAAGGTTTCCATCTGCGCATCGTTGCGCGGTATTGATTTGGCTTCCCGAGAACGCCCCAGCTGCTCTGCCAGGCGTTTCAGTTCCGGCTGTTCGTTAAGAAAtt                                   >  1:901517/1‑151 (MQ=255)
                                                                                                                cATCAACCTGCTCAGGAACCGTCGGCGATTCGCGCACCATAGTGCGAAAAGTTTCCATCTGCGCGTCGTTGCGGGGTATTTATTTGTCTTCCCTAGATCGCCGCAGCTGGTCTGCCAGGTGTTTCAGTTCCGGCTTTTCGTTATGAAAt                                    <  2:952383/149‑1 (MQ=255)
                                                                                                                cATCAACCTGCTCAGGAACCGTCGCCGGTTCGCGCGCCATGGTGCGGAAGGTTTCCATCTGCGCATCGTTGCGCGGTATTGATTTGGCTTCCCGAGAACGCCCCAGCTGCTCTGCCAGGCGTTTCAGTTCCGGCTGTTCGTTAAGAAATTc                                  >  1:143473/1‑151 (MQ=255)
                                                                                                                cATCAACCTGCTCAGGAACCGTCGCCGGTTCGCGCGCCATGGTGCGGAAGGTTTCCATCTGCGCATCGTTGCGCGGTATTGATTTGGCTTCCCGAGAACGCCCCAGCTGCTCTGCCAGGCGTTTCAGTTCCGGCTGTTCGTTAAGAAATTc                                  >  2:605867/1‑151 (MQ=255)
                                                                                                                   cAACCTGCTCAGGAACCGTCGCCGGTTCGCGCGCCATGGTGCGGAAGGTTTCCATCTGCGCATCGTTGCGCGGTATTGATTTGGCTTCCCGAGAACGCCCCAGCTGCTCTGCCAGGCGTTTCAGTTCCGGCTGTTCGTTAAGAAATTCAcc                               <  2:38220/151‑1 (MQ=255)
                                                                                                                     aCCTGCTCAGGAACCGTCGCCGGTTCGCGCGCCATGGTGCGGAAGGTTTCCATCTGCGCATCGTTGCGCGGTATTGATTTGGCTTCCCGAGAACGCCCCAGCTGCTCTGCCAGGCGTTTCAGTTCCGGCTGTTCGTTAAGAAATTCACCg                              <  1:1167668/150‑1 (MQ=255)
                                                                                                                      ccTGCTCAGGAACCGTCGCCGGTTCGCGCGCCATGGTGCGGAAGGTTTCCATCTGCGCATCGTTGCGCGGTATTGATTTGGCTTCCCGAGAACGCCCCAGCTGCTCTGCCAGGCGTTTCAGTTCCGGCTGTTCGTTAAGAAATTCACCGt                             >  2:477505/1‑150 (MQ=255)
                                                                                                                         gCTCAGGAACCGTCGCCGGTTCGCGCGCCATGGTGCGGAAGGTTTCCATCTGCGCATCGTTGCGCGGTATTGATTTGGCTTCCCGAGAACGCCCCAGCTGCTCTGCCAGGCGTTTCAGTTCCGGCTGTTCGTTAAGAAATTCACCGTAttt                         >  2:900904/1‑151 (MQ=255)
                                                                                                                         gCTCAGGAACCGTCGCCGGTTCGCGCGCCATGGTGCGGAAGGTTTCCATCTGCGCATCGTTGCGCGGTATTGATTTGGCTTCCCGAGAACGCCCCAGCTGCTCTGCCAGGCGTTTCAGTTCCGGCTGTTCGTTAAGAAATTCACCGTAttt                         >  1:729035/1‑151 (MQ=255)
                                                                                                                         gCTCAGGAACCGTCGCCGGTTCGCGCGCCATGGTGCGGAAGGTTTCCATCTGCGCATCGTTGCGCGGTATTGATTTGGCTTCCCGAGAACGCCCCAGCTGCTCTGCCAGGCGTTTCAGTTCCGGCTGTTCGTTAAGAAATTCACCGTAttt                         <  2:137101/151‑1 (MQ=255)
                                                                                                                          cTCAGGAACCGTCGCCGGTTCGCGCGCCATGGTGCGGAAGGTTTCCATCTGCGCATCGTTGCGCGGTATTGATTTGGCTTCCCGAGAACGCCCCAGCTGCTCTGCCAGGCGTTTCAGTTCCGGCTGTTCGTTAAGAAATTCACCGTATTTc                        >  1:177095/1‑151 (MQ=255)
                                                                                                                           tCAGGAACCGTCGCCGGTTCGCGCGCCATGGTGCGGAAGGTTTCCATCTGCGCATCGTTGCGCGGTATTGATTTGGCTTCCCGAGAACGCCCCAGCTGCTCTGCCAGGCGTTTCAGTTCCGGCTGTTCGTTAAGAAATTCACCGTATTTc                        >  1:348277/1‑150 (MQ=255)
                                                                                                                            cAGGAACCGTCGCCGGTTCGCGCGCCATGGTGCGGAAGGTTTCCATCTGCGCATCGTTGCGCGGTATTGATTTGGCTTCCCGAGAACGCCCCAGCTGCTCTGCCAGGCGTTTCAGTTCCGGCTGTTCGTTAAGAAATTCACCGTATTTcac                      <  1:739692/151‑1 (MQ=255)
                                                                                                                            cAGGAACCGTCGCCGGTTCGCGCGCCATGGTGCGGAAGGTTTCCATCTGCGCATCGTTGCGCGGTATTGATTTGGCTTCCCGAGAACGCCCCAGCTGCTCTGCCAGGCGTTTCAGTTCCGGCTGTTCGTTAAGAAATTCACCGTATTTca                       <  2:243937/150‑1 (MQ=255)
                                                                                                                                  ccGTCGCCGGTTCGCGCGCCATGGTGCGGAAGGTTTCCATCTGCGCATCGTTGCGCGGTATTGATTTGGCTTCCCGAGAACGCCCCAGCTGCTCTGCCAGGCGTTTCAGTTCCGGCTGTTCGTTAAGAAATTCACCGTATTTCACAATCaa                <  1:895758/151‑1 (MQ=255)
                                                                                                                                     tCGCCGGTTCGCGCGCCATGGTGCGGAAGGTTTCCATCTGCGCATCGTTGCGCGGTATTGATTTGGCTTCCCGAGAACGCCCCAGCTGCTCTGCCAGGCGTTTCAGTTCCGGCTGTTCGTTAAGAAATTCACCGTATTTCACAATCAACTg             >  2:710813/1‑151 (MQ=255)
                                                                                                                                       gCCGGTTCGCGCGCCATGGTGCGGAAGGTTTCCATCTGCGCATCGTTGCGCGGTATTGATTTGGCTTCCCGAGAACGCCCCAGCTGCTCTGCCAGGCGTTTCAGTTCCGGCTGTTCGTTAAGAAATTCACCGTATTTCACAATCAACTGAt           >  1:256859/1‑151 (MQ=255)
                                                                                                                                         cGGTTCGCGCGCCATGGTGCGGAAGGTTTCCATCTGCGCATCGTTGCGCGGTATTGATTTGGCTTCCCGAGAACGCCCCAGCTGCTCTGCCAGGCGTTTCAGTTCCGGCTGTTCGTTAAGAAATTCACCGTATTTCACAATCAACTGAt           >  2:67755/1‑149 (MQ=255)
                                                                                                                                         cGGTTCGCGCGCCATGGTGCGGAAGGTTTCCATCTGCGCATCGTTGCGCGGTATTGATTTGGCTTCCCGAGAACGCCCCAGCTGCTCTGCCAGGCGTTTCAGTTCCGGCTGTTCGTTAAGAAATTCACCGTATTTCACAATCAACTGAt           >  1:1237233/1‑149 (MQ=255)
                                                                                                                                          ggTTCGCGCGCCATGGTGCGGAAGGTTTCCATCTGCGCATCGTTGCGCGGTATTGATTTGGCTTCCCGAGAACGCCCCAGCTGCTCTGCCAGGCGTTTCAGTTCCGGCTGTTCGTTAAGAAATTCACCGTATTTCACAATCAACTGATAGt        <  1:828292/151‑1 (MQ=255)
                                                                                                                                            ttCGCGCGCCATGGTGCGGAAGGTTTCCATCTGCGCATCGTTGCGCGGTATTGATTTGGCTTCCCGAGAACGCCCCAGCTGCTCTGCCAGGCGTTTCAGTTCCGGCTGTTCGTTAAGAAATTCACCGTATTTCACAATCAACTGATAGTCg      >  1:1364276/1‑151 (MQ=255)
                                                                                                                                            ttCGCGCACCATGGTGCGGAAGGTTTCCATCTGCGCATCGTTGCGCGGTATTGATTTGGCTTCCCGAGAACGCCCCAGCTGCTCTGCCAGGCGTTTCAGTTCCGGCTGTTCGTTAAGAAATTCACCGTATTTCACAATCAACTGATAGTCg      >  2:1444692/1‑151 (MQ=255)
                                                                                                                                             tCGCGCGCCATGGTGCGGAAGGTTTCCATCTGCGCATCGTTGCGCGGTATTGATTTGGCTTCCCGAGAACGCCCCAGCTGCTCTGCCAGGCGTTTCAGTTCCGGCTGTTCGTTAAGAAATTCACCGTATTTCACAATCAACTGATAGTCg      <  1:725284/150‑1 (MQ=255)
                                                                                                                                             tCGCGCGCCATGGTGCGGAAGGTTTCCATCTGCGCATCGTTGCGCGGTATTGATTTGGCTTCCCGAGAACGCCCCAGCTGCTCTGCCAGGCGTTTCAGTTCCGGCTGTTCGTTAAGAAATTCACCGTATTTCACAATCAACTGATAGTCGc     >  2:687752/1‑151 (MQ=255)
                                                                                                                                             tCGCGCGCCATGGTGCGGAAGGTTTCCATCTGCGCATCGTTGCGCGGTATTGATTTGGCTTCCCGAGAACGCCCCAGCTGCTCTGCCAGGCGTTTCAGTTCCGGCTGTTCGTTAAGAAATTCACCGTATTTCACAATCAACTGATAGTCGc     >  1:707495/1‑151 (MQ=255)
                                                                                                                                             tCGCGCGCCATGGTGCGGAAGGTTTCCATCTGCGCATCGTTGCGCGGTATTGATTTGGCTTCCCGAGAACGCCCCAGCTGCTCTGCCAGGCGTTTCAGTTCCGGCTGTTCGTTAAGAAATTCACCGTATTTCACAATCAACTGATAGTCGc     >  1:794510/1‑151 (MQ=255)
                                                                                                                                              cgcgcgCCATGGTGCGGAAGGTTTCCATCTGCGCATCGTTGCGCGGTATTGATTTGGCTTCCCGAGAACGCCCCAGCTGCTCTGCCAGGCGTTTCAGTTCCGGCTGTTCGTTAAGAAATTCACCGTATTTCACAATCAACTGATAGTCGcc    <  2:1270091/151‑1 (MQ=255)
                                                                                                                                              cgcgcgCCATGGTGCGGAAGGTTTCCATCTGCGCATCGTTGCGCGGTATTGATTTGGCTTCCCGAGAACGCCCCAGCTGCTCTGCCAGGCGTTTCAGTTCCGGCTGTTCGTTAAGAAATTCACCGTATTTCACAATCAACTGATAGTCGcc    >  1:84828/1‑151 (MQ=255)
                                                                                                                                                cgcgCCATGGTGCGGAAGGTTTCCATCTGCGCATCGTTGCGCGGTATTGATTTGGCTTCCCGAGAACGCCCCAGCTGCTCTGCCAGGCGTTTCAGTTCCGGCTGTTCGTTAAGAAATTCACCGTATTTCACAATCAACTGATAGTCGCCAc  <  2:876290/151‑1 (MQ=255)
                                                                                                                                                cgcgCCATGGTGCGGAAGGTTTCCATCTGCGCATCGTTGCGCGGTATTGATTTGGCTTCCCGAGAACGCCCCAGCTGCTCTGCCAGGCGTTTCAGTTCCGGCTGTTCGTTAAGAAATTCACCGTATTTCACAATCAACTGATAGTCGCCAc  >  1:1438224/1‑151 (MQ=255)
                                                                                                                                                   |                                                                                                                                                   
AGCAACTGTTTTTCCACCAGCCGACGGTAAAACTCATACTCCAGTTCCGTTATCCCTAGTGTCGCCAGTTCTGGCGGCAGGAGACGTAAAATATCATCGCTTTGTTGCAGACCATCAACCTGCTCAGGAACCGTCGCCGGTTCGCGCACCATGGTGCGGAAGGTTTCCATCTGCGCATCGTTGCGCGGTATTGATTTGGCTTCCCGAGAACGCCCCAGCTGCTCTGCCAGGCGTTTCAGTTCCGGCTGTTCGTTAAGAAATTCACCGTATTTCACAATCAACTGATAGTCGCCAC  >  NC_000913/3928732‑3929026

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A