Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A4 F50 I3 R1
|
105 |
107.9 |
3491495 |
95.1% |
3320411 |
150.2 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,133,069 |
A→G |
T166A (ACT→GCT) |
flgE → |
flagellar hook protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,133,069 | 0 | A | G | 99.0%
| 379.9
/ NA
| 97 | T166A (ACT→GCT) | flgE | flagellar hook protein |
| Reads supporting (aligned to +/- strand): ref base A (0/0); major base G (51/45); minor base T (0/1); total (51/46) |
| Fisher's exact test for biased strand distribution p-value = 4.74e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
GACGGGTTACCCGGCAACCGGTACGCCGCCGACTATTCAGCAAGGGGCGAATCCGACCAATATTTCGATCCCGAATACCCTGATGGCAGCGAAAACTACCACCACGGCATCGATGCAGATCAACCTGAATTCCAGTGATCCGCTTCCTACTGTTACGCCATTCAGCGCCAGCAATGCGGATAGCTATAACAAAAAAGGTTCGGTGACTGTTTTCGACAGTCAGGGTAATGCTCATGACATGAGCGTCTACTTTGTGAAGACCGGGGATAATAACTGGCAGGTCTACACCCAGGAT > NC_000913/1132921‑1133215
|
gACGGGTTACCCGGCAACCGGTACGCCGCCGACTATTCAGCAAGGGGCGAATCCGACCAATATTTCGATCCCGAATACCCTGATGGCAGCGAAAACTACCACCACGGCATCGATGCAGATCAACCTGAATTCCAGTGATCCGCTTCCTGCt > 4:225285/1‑151 (MQ=255)
gACGGGTTACCCGGCAACCGGTACGCCGCCGACTATTCAGCAAGGGGCGAATCCGACCAATATTTCGATCCCGAATACCCTGATGGCAGCGAAAACTACCACCACGGCATCGATGCAGATCAACCTGAATTCCAGTGATCCGCTTCCTGCt > 4:170712/1‑151 (MQ=255)
ggTTACCCGGCAACCGGTACGCCGCCGACTATTCAGCAAGGGGCGAATCCGACCAATATTTCGATCCCGAATACCCTGATGGCAGCGAAAACTACCACCACGGCATCGATGCAGATCAACCTGAATTCCAGTGATCCGCTTCCTGCTGt > 1:1126324/1‑149 (MQ=255)
ggCAACCGGTACGCCGCCGACTATTCAGCAAGGGGCGAATCCGACCAATATTTCGATCCCGAATACCCTGATGGCAGCGAAAACTACCACCACGGCATCGATGCAGATCAACCTGAATTCCAGTGATCCGCTTCCTGCTGTTACGCCATTc < 4:9443/151‑1 (MQ=255)
gCAACCGGTACGCCGCCGACTATTCAGCAAGGGGCGAATCCGACCAATATTTCGATCCCGAATACCCTGATGGCAGCGAAAACTACCACCACGGCATCGATGCAGATCAACCTGAATTCCAGTGATCCGCTTCCTGCTGTTACGCCATTCa < 1:89135/151‑1 (MQ=255)
gCAACCGGTACGCCGCCGACTATTCAGCAAGGGGCGAATCCGACCAATATTTCGATCCCGAATACCCTGATGGCAGCGAAAACTACCACCACGGCATCGATGCAGATCAACCTGAATTCCAGTGATCCGCTTCCTGCTGTTACGCCATTCa < 1:50789/151‑1 (MQ=255)
cAACCGGTACGCCGCCGACTATTCAGCAAGGGGCGAATCCGACCAATATTTCGATCCCGAATACCCTGATGGCAGCGAAAACTACCACCACGGCATCGATGCAGATCAACCTGAATTCCAGTGATCCGCTTCCTGCTGTTACGCCATTc > 2:352655/1‑149 (MQ=255)
ggTACGCCGCCGACTATTCAGCAAGGGGCGAATCCGACCAATATTTCGATCCCGAATACCCTGATGGCAGCGAAAACTACCACCACGGCATCGATGCAGATCAACCTGAATTCCAGTGATCCGCTTCCTGCTGTTACGCCATTCAGCGcc > 1:779081/1‑150 (MQ=255)
ggTACGCCGCCGACTATTCAGCAAGGGGCGAATCCGACCAATATTTCGATCCCGAATACCCTGATGGCAGCGAAAACTACCACCACGGCATCGATGCAGATCAACCTGAATTCCAGTGATCCGCTTCCTGCTGTTACGCCATTCAGCGCCa < 3:399602/151‑1 (MQ=255)
tACGCCGCCGACTATTCAGCAAGGGGCGAATCCGACCAATATTTCGATCCCGAATACCCTGATGGCAGCGAAAACTACCACCACGGCATCGATGCAGATCAACCTGAATTCCAGTGATCCGCTTCCTGCTGTTACGCCATTCAGCGCCAGc > 1:300259/1‑151 (MQ=255)
aCGCCGCCGACTATTCAGCAAGGGGCGAATCCGACCAATATTTCGATCCCGAATACCCTGATGGCAGCGAAAACTACCACCACGGCATCGATGCAGATCAACCTGAATTCCAGTGATCCGCTTCCTGCTGTTACGCCATTCAGCGCCAGc > 1:1070565/1‑150 (MQ=255)
cgccgcCGACTATTCAGCAAGGGGCGAATCCGACCAATATTTCGATCCCGAATACCCTGATGGCAGCGAAAACTACCACCACGGCATCGATGCAGATCAACCTGAATTCCAGTGATCCGCTTCCTGCTGTTACGCCATTCAGCGCCAGCa > 4:164916/1‑150 (MQ=255)
gccgccGACTATTCAGCAAGGGGCGAATCCGACCAATATTTCGATCCCGAATACCCTGATGGCAGCGAAAACTACCACCACGGCATCGATGCAGATCAACCTGAATTCCAGTGATCCGCTTCCTGCTGTTACGCCATTCAGCGCCAGCAAt > 1:64965/1‑151 (MQ=255)
ccgccgACTATTCAGCAAGGGGCGAATCCGACCAATATTTCGATCCCGAATACCCTGATGGCAGCGAAAACTACCACCACGGCATCGATGCAGATCAACCTGAATTCCAGTGATCCGCTTCCTGCTGTTACGCCATTCAGCGCCAGCAATg > 4:127230/1‑151 (MQ=255)
cgccgACTATTCAGCAAGGGGCGAATCCGACCAATATTTCGATCCCGAATACCCTGATGGCAGCGAAAACTACCACCACGGCATCGATGCAGATCAACCTGAATTCCAGTGATCCGCTTCCTGCTGTTACGCCATTCAGCGCCAGCAATGc < 2:106604/151‑1 (MQ=255)
gccgACTATTCAGCAAGGGGCGAATCCGACCAATATTTCGATCCCGAATACCCTGATGGCAGCGAAAACTACCACCACGGCATCGATGCAGATCAACCTGAATTCCAGTGATCCGCTTCCTGCTGTTACGCCATTCAGCGCCAGCAATGCg > 2:251268/1‑151 (MQ=255)
cgACTATTCAGCAAGGGGCGAATCCGACCAATATTTCGATCCCGAATACCCTGATGGCAGCGAAAACTACCACCACGGCATCGATGCAGATCAACCTGAATTCCAGTGATCCGCTTCCTGCTGTTACGCCATTCAGCGCCAGCAATGCGGa < 3:191705/151‑1 (MQ=255)
gACTATTCAGCAAGGGGCGAATCCGACCAATATTTCGATCCCGAATACCCTGATGGCAGCGAAAACTACCACCACGGCATCGATGCAGATCAACCTGAATTCCAGTGATCCGCTTCCTGCTGTTACGCCATTCAGCGCCAGCAATGCGGAt < 3:88262/151‑1 (MQ=255)
aCTATTCAGCAAGGGGCGAATCCGACCAATATTTCGATCCCGAATACCCTGATGGCAGCGAAAACTACCACCACGGCATCGATGCAGATCAACCTGAATTCCAGTGATCCGCTTCCTGCTGTTACGCCATTCAGCGCCAGCAATGCGGATa < 2:32049/151‑1 (MQ=255)
cTATTCAGCAAGGGGCGAATCCGACCAATATTTCGATCCCGAATACCCTGATGGCAGCGAAAACTACCACCACGGCATCGATGCAGATCAACCTGAATTCCAGTGATCCGCTTCCTGCTGTTACGCCATTCAGCGCCAGCAATGCGGATa < 2:1227690/150‑1 (MQ=255)
aTTCAGCAAGGGGCGAATCCGACCAATATTTCGATCCCGAATACCCTGATGGCAGCGAAAACTACCACCACGGCATCGATGCAGATCAACCTGAATTCCAGTGATCCGCTTCCTGCTGTTACGCCATTAAGCGCCAGCAATGCGGATAGCt > 2:402529/1‑151 (MQ=255)
ttCAGCAAGGGGCGAATCCGACCAATATTTCGATCCCGAATACCCTGATGGCAGCGAAAACTACCGCCCCGGCATCGATGCAGATCAACCTGAATTCCAGTGATCCGCTTCCTTCTGTTTCGCCATTCCGCGCCAGCAATGCTGATa < 3:299997/147‑1 (MQ=255)
tCAGCAAGGGGCGAATCCGACCAATATTTCGATCCCGAATACCCTGATGGCAGCGAAAACTACCACCACGGCATCGATGCAGATCAACCTGAATTCCAGTGATCCGCTTCCTGCTGTTACGCCATTCAGCGCCAGCAATGCGGATAGCtat > 2:193098/1‑151 (MQ=255)
cAGCAAGGGGCGAATCCGACCAATATTTCGATCCCGAATACCCTGATGGCAGCGAAAACTACCACCACGGCATCGATGCAGATCAACCTGAATTCCAGTGATCCGCTTCCTGCTGTTACGCCATTCAGCGCCAGCAATGCGGATAGCtata < 1:705139/151‑1 (MQ=255)
gCAAGGGGCGAATCCGACCAATATTTCGATCCTGAATACCCTGATGGCAGCGAAAACTACCACCACGGCATCGATGCACATCAACCTGAATTCCAGTGCTCCGCTTCCTGCTGTTACGCCTTTCAGCGCCAGCAATGCGGATAGCtata > 2:1200150/1‑149 (MQ=255)
gCAAGGGGCGAATCCGACCAATATTTCGATCCCGAATACCCTGATGGCAGCGAAAACTACCACCACGGCATCGATGCAGATCAACCTGAATTCCAGTGATCCGCTTCCTGCTGTTACGCCATTCAGCGCCAGCAATGCGGATAGCTATAAc > 4:242401/1‑151 (MQ=255)
cAAGGGGCGAATCCGACCAATATTTCGATCCCGAATACCCTGATGGCAGCGAAAACTACCACCACGGCATCGATGCAGATCAACCTGAATTCCAGTGATCCGCTTCCTGCTGTTACGCCATTCAGCGCCAGCAATGCGGATAGCTATAACa < 1:358090/151‑1 (MQ=255)
ggggCGAGTCCGACCAAGATTACGATCCCGAATACCCTGATGGCAGCGAAAACTACCGCCACGGCATCGATGCAGATCACCCTGAATTCCAGTGATCCGCTTCCTGCTGTTACGCCATTCAGCGCCAGCAATGCGGATAGCTATAACaaa < 2:483587/150‑1 (MQ=255)
gggCGAATCCGACCAATATTTCGATCCCGAATACCCTGATGGCAGCGAAAACTACCACCACGGCATCGATGCAGATCAACCTGAATTCCAGTGATCCGCTTCCTGCTGTTACGCCATTCAGCGCCAGCAATGCGGATAGCTATAACaaaa > 1:255925/1‑150 (MQ=255)
gAATCCGACCAATATTTCGATCCCGAATACCCTGATGGCAGCGAAAACTACCACCACGGCATCGATGCAGATCAACCTGAATTCCAGTGATCCGCTTCCTGCTGTTACGCCATTCAGCGCCAGCAATGCGGATAGCTATAACAAAAAAg > 1:370754/1‑149 (MQ=255)
gAATCCGACCAATATTTCGATCCCGAATACCCTGATGGCAGCGAAAACTACCACCACGGCATCGATGCAGATCAACCTGAATTCCAGTGATCCGCTTCCTGCTGTTACGCCATTCAGCGCCAGCAATGCGGATAGCTATAACAAAAAAGGt < 1:88790/151‑1 (MQ=255)
aaTCCGACCAATATTTCGATCCCGAATACCCTGATGGCAGCGAAAACTACCACCACGGCATCGATGCAGATCAACCTGAATTCCAGTGATCCGCTTCCTGCTGTTACGCCATTCAGCGCCAGCAATGCGGATAGCTATAACAAAAAAGGtt < 1:858864/151‑1 (MQ=255)
cGACCAATATTTCGATCCCGAATACCCTGATGGCAGCGAAAACTACCACCACGGCATCGATGCAGATTAACCTGAATTCCAGTGATCCGCTTCCTGCTGTTACGCCATTCAGCGCCAGCAATGCGGATAGCTATAACAAAAAAGGTTCGGt > 1:202396/1‑151 (MQ=255)
aCCAATATTTCGATCCCGAATACCCTGATGGCAGCGAAAACTACCACCACGGCATCGATGCAGATCAACCTGAATTCCAGTGATCCGCTTCCTGCTGTTACGCCATTCAGCGCCAGCAATGCGGATAGCTATAACAAAAAAGGTTCGGTGa < 1:748588/151‑1 (MQ=255)
aCCAATATTTCGATCCCGAATACCCTGATGGCAGCGAAAACTACCACCACGGCATCGATGCAGATCAACCTGAATTCCAGTGATCCGCTTCCTGCTGTTACGCCATTCAGCGCCAGCAATGCGGATAGCTATAACAAAAAAGGTTCGGTGa < 3:373177/151‑1 (MQ=255)
atatTTCGATCCCGAATACCCTGATGGCAGCGAAAACTACCACCACGGCATCGATGCAGATCAACCTGAATTCCAGTGATCCGCTTCCTGCTGTTACGCCATTCAGCGCCAGCAATGCGGATAGCTATAACAAAAAAGGTTCGGTGACTGt < 3:117068/151‑1 (MQ=255)
atTTCGATCCCGAATACCCTGATGGCAGCGAAAACTACCACCACGGCATCGATGCAGATCAACCTGAATTCCAGTGATCCGCTTCCTGCTGTTACGCCATTCAGCGCCAGCAATGCGGATAGCTATAACAAAAAAGGTTCGGTGACTGttt > 2:622284/1‑151 (MQ=255)
ttCGATCCCGAATACCCTGATGGCAGCGAAAACTACCACCACGGCATCGATGCAGATCAACCTGAATTCCAGTGATCCGCTTCCTGCTGTTACGCCATTCAGCGCCAGCAATGCGGATAGCTATAACAAAAAAGGTTCGGTGACTGTTTTc > 1:548166/1‑151 (MQ=255)
ttCGATCCCGAATACCCTGATGGCAGCGAAAACTACCACCACGGCATCGATGCAGATCAACCTGAATTCCAGTGATCCGCTTCCTGCTGTTACGCCATTCAGCGCCAGCAATGCGGATAGCTATAACAAAAAAGGTTCGGTGACTGTTTTc > 1:135401/1‑151 (MQ=255)
cGATCCCGAATACCCTGATGGCAGCGAAAACTACCACCACGGCATCGATGCAGATCAACCTGAATTCCAGTGATCCGCTTCCTGCTGTTACGCCATTCAGCGCCAGCAATGCGGATAGCTATAACAAAAAAGGTTCGGTGACTGTTTTCg < 1:965601/150‑1 (MQ=255)
cGATCCCGAATACCCTGATGGCAGCGAAAACTACCACCACGGCATCGATGCAGATCAACCTGAATTCCAGTGATCCGCTTCCTGCTGTTACGCCATTCAGCGCCAGCAATGCGGATAGCTATAACAAAAAAGGTTCGGTGACTGTTTTCGa < 2:490555/151‑1 (MQ=255)
gATCCCGAATACCCTGATGGCAGCGAAAACTACCACCACGGCATCGATGCAGATCAACCTGAATTCCAGTGATCCGCTTCCTGCTGTTACGCCATTCAGCGCCAGCAATGCGGATAGCTATAACAAAAAAGGTTCGGTGACTGTTTTCGAc > 2:36675/1‑151 (MQ=255)
tCCCGAATACCCTGATGGCAGCGAAAACTACCACCACGGCATCGATGCAGATCAACCTGAATTCCAGTGATCCGCTTCCTGCTGTTACGCCATTCAGCGCCAGCAATGCGGATAGCTATAACAAAAAAGGTTCGGTGACTGTTTTCGAc > 2:393887/1‑149 (MQ=255)
cGAATACCCTGATGGCAGCGAAAACTACCACCACGGCATCGATGCAGATCAACCTGAATTCCAGTGATCCGCTTCCTGCTGTTACGCCATTCAGCGCCAGCAATGCGGATAGCTATAACAAAAAAGGTTCGGTGACTGTTTTCGACAGTc > 2:941532/1‑150 (MQ=255)
gAATACCCTGATGGCAGCGAAAACTACCACCACGGCATCGATGCAGATCAACCTGAATTCCAGTGATCCGCTTCCTGCTGTTACGCCATTCAGCGCCAGCAATGCGGATAGCTATAACAAAAAAGGTTCGGTGACTGTTTTCGACAGTCAg < 3:205008/151‑1 (MQ=255)
aaTACCCTGATGGCAGCGAAAACTACCACCACGGCATCGATGCAGATCAACCTGAATTCCAGTGATCCGCTTCCTGCTGTTACGCCATTCAGCGCCAGCAATGCGGATAGCTATAACAAAAAAGGTTCGGTGACTGtttt < 1:1068276/140‑1 (MQ=255)
aaTACCCTGATGGCAGCGAAAACTACCACCACGGCATCGATGCAGATCAACCTGAATTCCAGTGATCCGCTTCCTGCTGTTACGCCATTCAGCGCCAGCAATGCGGATAGCTATAACAAAAAAGGTTCGGTGACTGtttt > 2:1068076/1‑140 (MQ=255)
aCCCTGATGGCAGCGAAAACTACCACCACGGCATCGATGCAGATCAACCTGAATTCCAGTGATCCGCTTCCTGCTGTTACGCCATTCAGCGCCAGCAATGCGGATAGCTATAACAAAAAAGGTTCGGTGACTGTTTTCGACAGTCAGGGt > 1:83915/1‑150 (MQ=255)
cccTGATGGCAGCGAAAACCACCCCCACGGCATCGATGCAGATCAACCTGAATTCCAGTGATCCGCTTCCTGCTGTTACGCCATTCAGCGCCAGCAATGCGGATAGCTATAACAAAAAAGGTTCGGTGACTGTTTTCGACAGTCAGGGTa < 1:298895/150‑1 (MQ=255)
gATGGCAGCGAAAACTACCACCACGGCATCGATGCAGATCAACCTGAATTCCAGTGATCCGCTTCCTGCTGTTACGCCATTCAGCGCCAGCAATGCGGATAGCTATAACAAAAAAGGTTCGGTGACTGTTTTCGACAGTCAGGGTAATg < 1:1172618/149‑1 (MQ=255)
gATGGCAGCGAAAACTACCACCACGGCATCGATGCAGATCAACCTGAATTCCAGTGATCCGCTTCCTGCTGTTACGCCATTCAGCGCCAGCAATGCGGATAGCTATAACAAAAAAGGTTCGGTGACTGTTTTCGACAGTCAGGGTAATGc < 4:206956/150‑1 (MQ=255)
gATGGCAGCGAAAACTACCACCACGGCATCGATGCAGATCAACCTGAATTCCAGTGATCCGCTTCCTGCTGTTACGCCATTCAGCGCCAGCAATGCGGATAGCTATAACAAAAAAGGTTCGGTGACTGTTTTCGACAGTCAGGGTAATGCt > 2:1172408/1‑151 (MQ=255)
tGGCAGCGAAAACTACCACCACGGCATCGATGCAGATCAACCTGAATTCCAGTGATCCGCTTCCTGCTGTTACGCCATTCAGCGCCAGCAATGCGGATAGCTATAACAAAAAAGGTTCGGTGACTGTTTTCGACAGTCAGGGTAATGCTc > 2:213949/1‑150 (MQ=255)
cAGCGAAAACTACCACCACGGCATCGATGCAGATCAACCTGAATTCCAGTGATCCGCTTCCTGCTGTTACGCCATTCAGCGCCAGCAATGCGGATAGCTATAACAAAAAAGGTTCGGTGACTGTTTTCGACAGTCAGGGTAATGCTcatg > 2:1039673/1‑150 (MQ=255)
gAAAACTACCACCACGGCATCGATGCAGATCAACCTGAATTCCAGTGATCCGCTTCCTGCTGTTACGCCATTCAGCGCCAGCAATGCGGATAGCTATAACAAAAAAGGTTCGGTGACTGTTTTCGACAGTCAGGGTAATGCTcatgacatg > 2:261120/1‑151 (MQ=255)
gAAAACTACCACCACGGCATCGATGCAGATCAACCTGAATTCCAGTGATCCGCTTCCTGCTGTTACGCCATTCAGCGCCAGCAATGCGGATAGCTATAACAAAAAAGGTTCGGTGACTGTTTTCGACAGTCAGGGTAATGCTcatgacatg > 2:840170/1‑151 (MQ=255)
accaccACGGCATCGATGCAGATCAACCTGAATTCCAGTGATCCGCTTCCTGCTGTTACGCCATTCAGCGCCAGCAATGCGGATAGCTATAACAAAAAAGGTTCGGTGACTGTTTTCGACAGTCAGGGTAATGCTCATGACATGAGCGTc < 1:943849/150‑1 (MQ=255)
accaccACGGCATCGATGCAGATCAACCTGAATTCCAGTGATCCGCTTCCTGCTGTTACGCCATTCAGCGCCAGCAATGCGGATAGCTATAACAAAAAAGGTTCGGTGACTGTTTTCGACAGTCAGGGTAATGCTCATGACATGAGCGTCt > 1:593286/1‑151 (MQ=255)
ccaccaCGGCATCGATGCAGATCAACCTGAATTCCAGTGATCCGCTTCCTGCTGTTACGCCATTCAGCGCCAGCAATGCGGATAGCTATAACAAAAAAGGTTCGGTGACTGTTTTCGACAGTCAGGGTAATGCTCATGACATGAGCGTCt > 1:1155787/1‑150 (MQ=255)
cacctcGACATCGATGCAGATCACCCTCAATTCCATTGATCCGCTTCCTGCTGATACGCCATACAGCGCCAGCAATGCAGATAGCTATAACAAAAAAGGTTCGGTGACTGTTTTCGACAGTCAGAGTAATGCTCATGGCATGAGCTTCTAc < 2:321975/151‑1 (MQ=255)
ccacGGCATCGATGCAGATCAACCTGAATTCCAGTGATCCGCTTCCTGCTGTTACGCCATTCAGCGCCAGCAATGCGGATAGCTATAACAAAAAAGGTTCGGTGACTGTTTTCGACAGTCAGGGTAATGCTCATGACATGAGCGTCTACtt > 4:528/1‑151 (MQ=255)
cacGGCATCGATGCAGATCAACCTGAATTCCAGTGATCCGCTTCCTGCTGTTACGCCATTCAGCGCCAGCAATGCGGATAGCTATAACAAAAAAGGTTCGGTGACTGTTTTCGACAGTCAGGGTAATGCTCATGACATGAGCGTCTACttt < 2:549896/151‑1 (MQ=255)
acGGCATCGATGCAGATCAACCTGAATTCCAGTGATCCGCTTCCTGCTGTTACGCCATTCAGCGCCAGCAATGCGGATAGCTATAACAAAAAAGGTTCGGTGACTGTTTTCGACAGTCAGGGTAATGCTCATGACATGAGCGTCTACTTtg < 4:38312/151‑1 (MQ=255)
aTCGATGCAGATCAACCTGAATTCCAGTGATCCGCTTCCTGCTGTTACGCCATTCAGCGCCAGCAATGCGGATAGCTATAACAAAAAAGGTTCGGTGACTGTTTTCGACAGTCAGGGTAATGCTCATGACATGAGCGTCTACTTTGTGa > 2:647303/1‑149 (MQ=255)
cGATGCAGATCAACCTGAATTCCAGTGATCCGCTTCCTGCTGTTACGCCATTCAGCGCCAGCAATGCGGATAGCTATAACAAAAAAGGTTCGGTGACTGTTTTCGACAGTCAGGGTAATGCTCATGACATGAGCGTCTACTTTGTGAAGa < 3:85052/150‑1 (MQ=255)
cGATGCAGATCAACCTGAATTCCAGTGATCCGCTTCCTGCTGTTACGCCATTCAGCGCCAGCAATGCGGATAGCTATAACAAAAAAGGTTCGGTGACTGTTTTCGACAGTCAGGGTAATGCTCATGACATGAGCGTCTACTTTGTGAAGAc > 2:618305/1‑151 (MQ=255)
gATGCAGATCAACCTGAATTCCAGTGATCCGCTTCCTGCTGTTACGCCATTCAGCGCCAGCAATGCGGATAGCTATAACAAAAAAGGTTCGGTGACTGTTTTCGACAGTCAGGGTAATGCTCATGACATGAGCGTCTACTTTGTGAAGAcc > 1:300217/1‑151 (MQ=255)
gATGCAGATCAACCTGAATTCCAGTGATCCGCTTCCTGCTGTTACGCCATTCAGCGCCAGCAATGCGGATAGCTATAACAAAAAAGGTTCGGTGACTGTTTTCGACAGTCAGGGTAATGCTCATGACATGAGCGTCTACTTTGTGAAGAcc < 1:889120/151‑1 (MQ=255)
gCAGATCAACCTGAATTCCAGTGATCCGCTTCCTGCTGTTACGCCATTCAGCGCCAGCAATGCGGATAGCTATAACAAAAAAGGTTCGGTGACTGTTTTCGACAGTCAGGGTAATGCTCATGACATGAGCGTCTACTTTGTGAAGACCggg < 2:391612/151‑1 (MQ=255)
gCAGATCAACCTGAATTCCAGTGATCCGCTTCCTGCTGTTACGCCATTCAGCGCCAGCAATGCGGATAGCTATAACAAAAAAGGTTCGGTGACTGTTTTCGACAGTCAGGGTAATGCTCATGACATGAGCGTCTACTTTGTGAAGACCgg < 3:528/150‑1 (MQ=255)
gCAGATCAACCTGAATTCCAGTGATCCGCTTCCTGCTGTTACGCCATTCAGCGCCAGCAATGCGGATAGCTATAACAAAAAAGGTTCGGTGACTGTTTTCGACAGTCAGGGTAATGCTCATGACATGAGCGTCTACTTTGTGAAGACCgg < 4:196635/150‑1 (MQ=255)
acaTCAACCTGAATTCCAGTGATCCGCTTCCTGCTGTTACGCCATTCAGCGCCAGCAATGCGGATAGCTATAACAAAAAAGGTTCGGTGACTGTTTTCGACAGTCAGGGTAATGCTCATGACATGAGCGTCTACTTTGTGAAGACCgggg > 2:196774/3‑150 (MQ=255)
aGATCAACCTGAATTCCAGTGATCCGCTTCCTGCTGTTACGCCATTCAGCGCCAGCAATGCGGATAGCTATGACAATAAATGTTCGGTGACTGATTTCGACAGTCCGGGGAATGCTCATGACATGAGTGTCTACTTTGTGAAGACCgggg > 2:771711/1‑150 (MQ=255)
gATCAACCTGAATTCCAGTGATCCGCTTCCTGCTGTTACGCCATTCAGCGCCAGCAATGCGGATAGCTATAACAAAAAAGGTTCGGTGACTGTTTTCGACAGTCAGGGTAATGCTCATGACATGAGCGTCTACTTTGTGAAGACCGGGGat > 2:701868/1‑151 (MQ=255)
gATCAACCTGAATTCCAGTGATCCGCTTCCTGCTGTTACGCCATTCAGCGCCAGCAATGCGGATAGCTATAACAAAAAAGGTTCGGTGACTGTTTTCGACAGTCAGGGTAATGCTCATGACATGAGCGTCTACTTTGTGAAGACCGGGGat < 4:159541/151‑1 (MQ=255)
aTCAACCTGAATTCCAGTGATCCGCTTCCTGCTGTTACGCCATTCAGCGCCAGCAATGCGGATAGCTATAACAAAAAAGGTTCGGTGACTGTTTTCGACAGTCAGGGTAATGCTCATGACATGAGCGTCTACTTTGTGAAGACCGGGGata < 2:924147/151‑1 (MQ=255)
cAACCTGAATTCCAGTGATCCGCTTCCTGCTGTTACGCCATTCAGCGCCAGCAATGCGGATAGCTATAACAAAAAAGGTTCGGTGACTGTTTTCGACAGTCAGGGTAATGCTCATGACATGAGCGTCTACTTTGTGAAGACCGGGGataat > 1:1218804/1‑151 (MQ=255)
aCCTGAATTCCAGTGATCCGCTTCCTGCTGTTACGCCATTCAGCGCCAGCAATGCGGATAGCTATAACAAAAAAGGTTCGGTGACTGTTTTCGACAGTCAGGGTAATGCTCATGACATGAGCGTCTACTTTGTGAAGACCGGGGAtaataa < 1:267191/151‑1 (MQ=255)
gAATTCCAGTGATCCGCTTCCTGCTGTTACGCCATTCAGCGCCAGCAATGCGGATAGCTATAACAAAAAAGGTTCGGTGACTGTTTTCGACAGTTAGGGTAATGCTCATGACATGGGCGTCTTCTTTGTGAAGACCGGGGATAATAACTgg < 1:128109/151‑1 (MQ=255)
gAATTCCAGTGATCCGCTTCCTGCTGTTACGCCATTCAGCGCCAGCAATGCGGATAGCTATAACAAAAAAGGTTCGGTGACTGTTTTCGACAGTCAGGGTAATGCTCATGACATGAGCGTCTACTTTGTGAAGACCGGGGATAATAACTgg < 1:847463/151‑1 (MQ=255)
gAATTCCAGTGATCCGCTTCCTGCTGTTACGCCATTCAGCGCCAGCAATGCGGATAGCTATAACAAAAAAGGTTCGGTGACTGTTTTCGACAGTCAGGGTAATGCTCATGACATGAGCGTCTACTTTGTGAAGACCGGGGATAATAACTg < 4:50705/150‑1 (MQ=255)
aTTCCAGTGATCCGCTTCCTGCTGTTACGCCATTCAGCGCCAGCAATGCGGATAGCTATAACAAAAAAGGTTCGGTGACTGTTTTCGACAGTCAGGGTAATGCTCATGACATGAGCGTCTACTTTGTGAAGACCGGGGATAATAACTGGCa < 2:1242252/151‑1 (MQ=255)
tCCAGTGATCCGCTTCCTGCTGTTACGCCATTCAGCGCCAGCAATGCGGATAGCTATAACAAAAAAGGTTCGGTGACTGTTTTCGACAGTCAGGGTAATGCTCATGACATGAGCGTCTACTTTGTGAAGACCGGGGATAATAACTGGCAgg > 1:1094755/1‑151 (MQ=255)
cAGTGATCCGCTTCCTGCTGTTACGCCATTCAGCGCCAGCAATGCGGATAGCTATAACAAAAAAGGTTCGGTGACTGTTTTCGACAGTCAGGGTAATGCTCATGACATGAGCGTCTACTTTGTGAAGACCGGGGATAATAACTGGCAGGTc > 2:170402/1‑151 (MQ=255)
aGTGATCCGCTTCCTGCTGTTACGCCATTCAGCGCCAGCAATGCGGATAGCTATAACAAAAAAGGTTCGGTGACTGTTTTCGACAGTCAGGGTAATGCTCATGACATGAGCGTCTACTTTGTGAAGACCGGGGATAATAACTGGCAGGTCt < 1:251305/151‑1 (MQ=255)
aGTGATCCGCTTCCTGCTGTTACGCCATTCAGCGCCAGCAATGCGGATAGCTATAACAAAAAAGGTTCGGTGACTGTTTTCGACAGTCAGGGTAATGCTCATGACATGAGCGTCTACTTTGTGAAGACCGGGGATAATAACTGGCAGGTCt > 4:444345/1‑151 (MQ=255)
gATCCGCTTCCTGCTGTTACGCCATTCAGCGCCAGCAATGCGGATAGCTATAACAAAAAAGGTTCGGTGACTGTTTTCGACAGTCAGGGTAATGCTCATGACATGAGCGTCTACTTTGTGAAGACCGGGGATAATAACTGGCAGGTCTac > 2:413478/1‑150 (MQ=255)
aTCCGCTTCCTGCTGTTACGCCATTCAGCGCCAGCAATGCGGATAGCTATAACAAAAAAGGTTCGGTGACTGTTTTCGACAGTCAGGGTAATGCTCATGACATGAGCGTCTACTTTGTGAAGACCGGGGATAATAACTGGCAGGTCTacac < 2:1026553/151‑1 (MQ=255)
aTCCGCTTCCTGCTGTTACGCCATTCAGCGCCAGCAATGCGGATAGCTATAACAAAAAAGGTTCGGTGACTGTTTTCGACAGTCAGGGTAATGCTCATGACATGAGCGTCTACTTTGTGAAGACCGGGGATAATAACTGGCAGGTCTacac > 2:171049/1‑151 (MQ=255)
tCCGCTTCCTGCTGTTACGCCATTCAGCGCCAGCAATGCGGATAGCTATAACAAAAAAGGTTCGGTGACTGTTTTCGACAGTCAGGGTAATGCTCATGACATGAGCGTCTACTTTGTGAAGACCGGGGATAATAACTGGCAGGTCTACAcc > 3:280117/1‑151 (MQ=255)
tCCGCTTCCTGCTGTTACGCCATTCAGCGCCAGCAATGCGGATAGCTATAACAAAAAAGGTTCGGTGACTGTTTTCGACAGTCAGGGTAATGCTCATGACATGAGCGTCTACTTTGTGAAGACCGGGGATAATAACTGGCAGGTCTACAcc > 2:1247307/1‑151 (MQ=255)
ccGCTTCCTGCTGTTACGCCATTCAGCGCCAGCAATGCGGATAGCTATAACAAAAAAGGTTCGGTGACTGTTTTCGACAGTCAGGGTAATGCTCATGACATGAGCGTCTACTTTGTGAAGACCGGGGATAATAACTGGCAGGTCTACAccc < 1:770649/151‑1 (MQ=255)
ccGCTTCCTGCTGTTACGCCATTCAGCGCCAGCAATGCGGATAGCTATAACAAAAAAGGTTCGGTGACTGTTTTCGACAGTCAGGGTAATGCTCATGACATGAGCGTCTACTTTGTGAAGACCGGGGATAATAACTGGCAGGTCTACAccc > 2:975549/1‑151 (MQ=255)
gCTTCCTGCTGTTACGCCATTCAGCGCCAGCAATGCGGATAGCTATAACAAAAAAGGTTCGGTGACTGTTTTCGACAGTCAGGGTAATGCTCATGACATGAGCGTCTACTTTGTGAAGACCGGGGATAATAACTGGCAGGTCTACAccc > 1:803767/1‑149 (MQ=255)
gCTTCCTGCTGTTACGCCATTCAGCGCCAGCAATGCGGATAGCTATAACAAAAAAGGTTCGGTGACTGTTTTCGACAGTCAGGGTAATGCTCATGACATGAGCGTCTACTTTGTGAAGACCGGGGATAATAACTGGCAGGTCTACACCCAg < 4:406018/151‑1 (MQ=255)
tCCTGCTGTTACGCCATTCAGCGCCAGCAATGCGGATAGCTATAACAAAAAAGGTTCGGTGACTGTTTTCGACAGTCAGGGTAATGCTCATGACATGAGCGTCTACTTTGTGAAGACCGGGGATAATAACTGGCAGGTCTACACCCAGGAt > 2:673565/1‑151 (MQ=255)
ccTGCTGTTACGCCATTCAGCGCCAGCAATGCGGATAGCTATAACAAAAAAGGTTCGGTGACTGTTTTCGACAGTCAGGGTAATGCTCATGACATGAGCGTCTACTTTGTGAAGACCGGGGATAATAACTGGCAGGTCTACACCCAGGAt < 2:1158627/150‑1 (MQ=255)
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GACGGGTTACCCGGCAACCGGTACGCCGCCGACTATTCAGCAAGGGGCGAATCCGACCAATATTTCGATCCCGAATACCCTGATGGCAGCGAAAACTACCACCACGGCATCGATGCAGATCAACCTGAATTCCAGTGATCCGCTTCCTACTGTTACGCCATTCAGCGCCAGCAATGCGGATAGCTATAACAAAAAAGGTTCGGTGACTGTTTTCGACAGTCAGGGTAATGCTCATGACATGAGCGTCTACTTTGTGAAGACCGGGGATAATAACTGGCAGGTCTACACCCAGGAT > NC_000913/1132921‑1133215
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
