Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A8 F50 I2 R1 150 68.2 2132745 98.7% 2105019 150.2

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,503,797 A→G intergenic (‑366/‑261) insG ← / → yjhB IS4 transposase/putative MFS transporter, membrane protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,503,7970AG100.0% 229.9 / NA 65intergenic (‑366/‑261)insG/yjhBIS4 transposase/putative MFS transporter, membrane protein
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (37/28);  total (37/28)

AAGCAAAGAAATACTGCAAAGGAAAACAGCTATAACGTAAGCTAAAGTAATAACCTCTCAGTCTTTCCTCATTTGACGAAGGGAGTTTTATTCAACCTGAACGGACTACGAAAATGAGCACAATGAATAAGTCAATTTTTGAAGCAGGGTTGAACTGTGCCAGTGGTGGAATATCTGGCGAACATTGTTTTTTGTTGGTGACCCAAAACTGTAGGTGGGTATCAGTTTTATCTTTCATAGAGTGAAATATGTTAAGAAGAAATGGAGGAAAAGATTGTACTGATTAGGTATTG  >  NC_000913/4503652‑4503944
                                                                                                                                                 |                                                                                                                                                   
aaGCAAAGAAATACTGCAAAGGAAAACAGCTATAACGTAAGCTAAAGTAATAACCTCTCAGTCTTTCCTCATTTGACGAAGGGAGTTTTATTCAACCTGAACGGACTACGAAAATGAGCACAATGAATAAGTCAATTTTTGAAGCGGGGtt                                                                                                                                                >  2:1025741/1‑151 (MQ=255)
     aaGAAATACTGCAAAGGAAAACAGCTATAACGTAAGCTAAAGTAATAACCTCTCAGTCTTTCCTCATTTGACGAAGGGAGTTTTATTCAACCTGAACGGACTACGAAAATGAGCACAATGAATAAGTCAATTTTTGAAGCGGGGTTGAACt                                                                                                                                           >  2:939625/1‑151 (MQ=255)
     aaGAAATACTGCAAAGGAAAACAGCTATAACGTAAGCTAAAGTAATAACCTCTCAGTCTTTCCTCATTTGACGAAGGGAGTTTTATTCAACCTGAACGGACTACGAAAATGAGCACAATGAATAAGTCAATTTTTGAAGCGGGGTTGAACt                                                                                                                                           >  1:453640/1‑151 (MQ=255)
          aTACTGCAAAGGAAAACAGCTATAACGTAAGCTAAAGTAATAACCTCTCAGTCTTTCCTCATTTGACGAAGGGAGTTTTATTCAACCTGAACGGACTACGAAAATGAGCACAATGAATAAGTCAATTTTTGAAGCGGGGTTGAACTGTGcc                                                                                                                                      >  1:585810/1‑151 (MQ=255)
             cTGCAAAGGAAAACAGCTATAACGTAAGCTAAAGTAATAACCTCTCAGTCTTTCCTCATTTGACGAAGGGAGTTTTATTCAACCTGAACGGACTACGAAAATGAGCACAATGAATAAGTCAATTTTTGAAGCGGGGTTGAACTGTGCCAg                                                                                                                                    >  1:219910/1‑150 (MQ=255)
               gCAAAGGAAAACAGCTATAACGTAAGCTAAAGTAATAACCTCTCAGTCTTTCCTCATTTGACGAAGGGAGTTTTATTCAACCTGAACGGACTACGAAAATGAGCACAATGAATAAGTCAATTTTTGAAGCGGGGTTGAACTGTGCCAgtg                                                                                                                                  <  1:162611/150‑1 (MQ=255)
                cAAAGGAAAACAGCTATAACGTAAGCTAAAGTAATAACCTCTCAGTCTTTCCTCATTTGACGAAGGGAGTTTTATTCAACCTGAACGGACTACGAAAATGAGCACAATGAATAAGTCAATTTTTGAAGCGGGGTTGAACTGTGCCAgtggt                                                                                                                                <  1:361117/151‑1 (MQ=255)
                 aaaGGAAAACAGCTATAACGTAAGCTAAAGTAATAACCTCTCAGTCTTTCCTCATTTGACGAAGGGAGTTTTATTCAACCTGAACGGACTACGAAAATGAGCACAATGAATAAGTCAATTTTTGAAGCGGGGTTGAACTGTGCCAgtggtg                                                                                                                               <  2:802579/151‑1 (MQ=255)
                      aaaaCAGCTATAACGTAAGCTAAAGTAATAACCTCTCAGTCTTTCCTCATTTGACGAAGGGAGTTTTATTCAACCTGAACGGACTACGAAAATGAGCACAATGAATAAGTCAATTTTTGAAGCGGGGTTGAACTGTGCCAGTGGTGGAata                                                                                                                          <  2:643249/151‑1 (MQ=255)
                             cTATAACGTAAGCTAAAGTAATAACCTCTCAGTCTTTCCTCATTTGACGAAGGGAGTTTTATTCAACCTGAACGGACTACGAAAATGAGCACAATGAATAAGTCAATTTTTGAAGCGGGGTTGAACTGTGCCAGTGGTGGAATATCTGGCg                                                                                                                   >  2:123838/1‑151 (MQ=255)
                              tataACGTAAGCTAAAGTAATAACCTCTCAGTCTTTCCTCATTTGACGAAGGGAGTTTTATTCAACCTGAACGGACTACGAAAATGAGCACAATGAATAAGTCAATTTTTGAAGCGGGGTTGAACTGTGCCAGTGGTGGAATATCTGGCg                                                                                                                   >  2:277499/1‑150 (MQ=255)
                               ataACGTAAGCTAAAGTAATAACCTCTCAGTCTTTCCTCATTTGACGAAGGGAGTTTTATTCAACCTGAACGGACTACGAAAATGAGCACAATGAATAAGTCAATTTTTGAAGCGGGGTTGAACTGTGCCAGTGGTGGAATATCTGGCGaa                                                                                                                 <  1:153844/151‑1 (MQ=255)
                               ataACGTAAGCTAAAGTAATAACCTCTCAGTCTTTCCTCATTTGACGAAGGGAGTTTTATTCAACCTGAACGGACTACGAAAATGAGCACAATGAATAAGTCAATTTTTGAAGCGGGGTTGAACTGTGCCAGTGGTGGAATATCTGGCGa                                                                                                                  <  1:588032/150‑1 (MQ=255)
                                taACGTAAGCTAAAGTAATAACCTCTCAGTCTTTCCTCATTTGACGAAGGGAGTTTTATTCAACCTGAACGGACTACGAAAATGAGCACAATGAATAAGTCAATTTTTGAAGCGGGGTTGAACTGTGCCAGTGGTGGAATATCTGGCGAAc                                                                                                                >  2:1003/1‑151 (MQ=255)
                                     tAAGCTAAAGTAATAACCTCTCAGTCTTTCCTCATTTGACGAAGGGAGTTTTATTCAACCTGAACGGACTACGAAAATGAGCACAATGAATAAGTCAATTTTTGAAGCGGGGTTGAACTGTGCCAGTGGTGGAATATCTGGCGAACATTGt                                                                                                           >  2:638516/1‑151 (MQ=255)
                                      aaGCTAAAGTAATAACCTCTCAGTCTTTCCTCATTTGACGAAGGGAGTTTTATTCAACCTGAACGGACTACGAAAATGAGCACAATGAATAAGTCAATTTTTGAAGCGGGGTTGAACTGTGCCAGTGGTGGAATATCTGGCGAACATTGtt                                                                                                          >  2:287737/1‑151 (MQ=255)
                                          tAAAGTAATAACCTCTCAGTCTTTCCTCATTTGACGAAGGGAGTTTTATTCAACCTGAACGGACTACGAAAATGAGCACAATGAATAAGTCAATTTTTGAAGCGGGGTTGAACTGTGCCAGTGGTGGAATATCTGGCGAACATTGtttttt                                                                                                      >  1:816080/1‑151 (MQ=255)
                                           aaaGTAATAACCTCTCAGTCTTTCCTCATTTGACGAAGGGAGTTTTATTCAACCTGAACGGACTACGAAAATGAGCACAATGAATAAGTCAATTTTTGAAGCGGGGTTGAACTGTGCCAGTGGTGGAATATCTGGCGAACATTGttttt                                                                                                       <  1:246168/149‑1 (MQ=255)
                                            aaGTAATAACCTCTCAGTCTTTCCTCATTTGACGAAGGGAGTTTTATTCAACCTGAACGGACTACGAAAATGAGCACAATGAATAAGTCAATTTTTGAAGCGGGGTTGAACTGTGCCAGTGGTGGAATATCTGGCGAACATTGTTTTttgt                                                                                                    >  2:675661/1‑151 (MQ=255)
                                              gTAATAACCTCTCAGTCTTTCCTCATTTGACGAAGGGAGTTTTATTCAACCTGAACGGACTACGAAAATGAGCACAATGAATAAGTCAATTTTTGAAGCGGGGTTGAACTGTGCCAGTGGTGGAATATCTGGCGAACATTGTTTTttgttg                                                                                                  <  1:580122/151‑1 (MQ=255)
                                              gTAATAACCTCTCAGTCTTTCCTCATTTGACGAAGGGAGTTTTATTCAACCTGAACGGACTACGAAAATGAGCACAATGAATAAGTCAATTTTTGAAGCGGGGTTGAACTGTGCCAGTGGTGGAATATCTGGCGAACATTGTTTTttgttg                                                                                                  <  2:446804/151‑1 (MQ=255)
                                                 ataaCCTCTCAGTCTTTCCTCATTTGACGAAGGGAGTTTTATTCAACCTGAACGGACTACGAAAATGAGCACAATGAATAAGTCAATTTTTGAAGCGGGGTTGAACTGTGCCAGTGGTGGAATATCTGGCGAACATTGTTTTTTGTTGGTg                                                                                               >  1:702894/1‑151 (MQ=255)
                                                     ccTCTCAGTCTTTCCTCATTTGACGAAGGGAGTTTTATTCAACCTGAACGGACTACGAAAATGAGCACAATGAATAAGTCAATTTTTGAAGCGGGGTTGAACTGTGCCAGTGGTGGAATATCTGGCGAACATTGTTTTTTGTTGGTGAccc                                                                                           >  1:180412/1‑151 (MQ=255)
                                                        ctcAGTCTTTCCTCATTTGACGAAGGGAGTTTTATTCAACCTGAACGGACTACGAAAATGAGCACAATGAATAAGTCAATTTTTGAAGCGGGGTTGAACTGTGCCAGTGGTGGAATATCTGGCGAACATTGTTTTTTGTTGGTGACCCa                                                                                          <  2:562434/149‑1 (MQ=255)
                                                          cAGTCTTTCCTCATTTGACGAAGGGAGTTTTATTCAACCTGAACGGACTACGAAAATGAGCACAATGAATAAGTCAATTTTTGAAGCGGGGTTGAACTGTGCCAGTGGTGGAATATCTGGCGAACATTGTTTTTTGTTGGTGACCCaaa                                                                                        <  1:352601/149‑1 (MQ=255)
                                                          cAGTCTTTCCTCATTTGACGAAGGGAGTTTTATTCAACCTGAACGGACTACGAAAATGAGCACAATGAATAAGTCAATTTTTGAAGCGGGGTTGAACTGTGCCAGTGGTGGAATATCTGGCGAACATTGTTTTTTGTTGGTGACCCAAAAc                                                                                      <  2:211013/151‑1 (MQ=255)
                                                           aGTCTTTCCTCATTTGACGAAGGGAGTTTTATTCAACCTGAACGGACTACGAAAATGAGCACAATGAATAAGTCAATTTTTGAAGCGGGGTTGAACTGTGCCAGTGGTGGAATATCTGGCGAACATTGTTTTTTGTTGGTGACCCAAAACt                                                                                     >  2:719342/1‑151 (MQ=255)
                                                               tttCCTCATTTGACGAAGGGAGTTTTATTCAACCTGAACGGACTACGAAAATGAGCACAATGAATAAGTCAATTTTTGAAGCGGGGTTGAACTGTGCCAGTGGTGGAATATCTGGCGAACATTGTTTTTTGTTGGTGACCCAAAACTg                                                                                    >  1:304699/1‑148 (MQ=255)
                                                                ttCCTCATTTGACGAAGGGAGTTTTATTCAACCTGAACGGACTACGAAAATGAGCACAATGAATAAGTCAATTTTTGAAGCGGGGTTGAACTGTGCCAGTGGTGGAATATCTGGCGAACATTGTTTTTTGTTGGTGACCCAAAACTGTAgg                                                                                >  2:492116/1‑151 (MQ=255)
                                                                  ccTCATTTGACGAAGGGAGTTTTATTCAACCTGAACGGACTACGAAAATGAGCACAATGAATAAGTCAATTTTTGAAGCGGGGTTGAACTGTGCCAGTGGTGGAATATCTGGCGAACATTGTTTTTTGTTGGTGACCCAAAACTGTAGGTg                                                                              <  2:1062914/151‑1 (MQ=255)
                                                                   cTCATTTGACGAAGGGAGTTTTATTCAACCTGAACGGACTACGAAAATGAGCACAATGAATAAGTCAATTTTTGAAGCGGGGTTGAACTGTGCCAGTGGTGGAATATCTGGCGAACATTGTTTTTTGTTGGTGACCCAAAACTGTAGGTgg                                                                             >  1:355349/1‑151 (MQ=255)
                                                                       tttGACGAAGGGAGTTTTCTTCAACCTGAACGGACTACGAAAATGAGCACAATGAATAAGTCAATTTTTGCAGCGGGGTTGAACTGTGCCAGTGGTGGAATATCTGGCGAAAATTGTTTTTTGTTGGTGACCCAAAACTGTAGGTGGGTAt                                                                         >  1:1027575/1‑151 (MQ=255)
                                                                          gACGAAGGGAGTTTTATTCAACCTGAACGGACTACGAAAATGAGCACAATGAATAAGTCAATTTTTGAAGCGGGGTTGAACTGTGCCAGTGGTGGAATATCTGGCGAACATTGTTTTTTGTTGGTGACCCAAAACTGTAGGTGGGTATCa                                                                       <  1:621877/150‑1 (MQ=255)
                                                                          gACGAAGGGAGTTTTATTCAACCTGAACGGACTACGAAAATGAGCACAATGAATAAGTCAATTTTTGAAGCGGGGTTGAACTGTGCCAGTGGTGGAATATCTGGCGAACATTGTTTTTTGTTGGTGACCCAAAACTGTAGGTGGGTATCa                                                                       <  1:420646/150‑1 (MQ=255)
                                                                          gACGAAGGGAGTTTTATTCAACCTGAACGGACTACGAAAATGAGCACAATGAATAAGTCAATTTTTGAAGCGGGGTTGAACTGTGCCAGTGGTGGAATATCTGGCGAACATTGTTTTTTGTTGGTGACCCAAAACTGTAGGTGGGTATCAg                                                                      <  1:294912/151‑1 (MQ=255)
                                                                             gAAGGGAGTTTTATTCAACCTGAACGGACTACGAAAATGAGCACAATGAATAAGTCAATTTTTGAAGCGGGGTTGAACTGTGCCAGTGGTGGAATATCTGGCGAACATTGTTTTTTGTTGGTGACCCAAAACTGTAGGTGGGTATCAGttt                                                                   >  2:615928/1‑151 (MQ=255)
                                                                             gAAGGGAGTTTTATTCAACCTGAACGGACTACGAAAATGAGCACAATGAATAAGTCAATTTTTGAAGCGGGGTTGAACTGTGCCAGTGGTGGAATATCTGGCGAACATTGTTTTTTGTTGGTGACCCAAAACTGTAGGTGGGTATCAGttt                                                                   >  1:281152/1‑151 (MQ=255)
                                                                               aGGGAGTTTTATTCAACCTGAACGGACTACGAAAATGAGCACAATGAATAAGTCAATTTTTGAAGCGGGGTTGAACTGTGCCAGTGGTGGAATATCTGGCGAACATTGTTTTTTGTTGGTGACCCAAAACTGTAGGTGGGTATCAGTTTTa                                                                 <  2:793000/151‑1 (MQ=255)
                                                                               aGGGAGTTTTATTCAACCTGAACGGACTACGAAAATGAGCACAAGGAATAAGTCAATTTTTGAAGCGGGGTTGAACTGGGCCAGTGGTGGAATATCTGGCGAACATTGTTTTTTGTTGGTGACCCAAAACTGTAGGTGGGTATCAGTTTTa                                                                 <  2:994070/151‑1 (MQ=255)
                                                                                gggAGTTTTATTCAACCTGAACGGACTACGAAAATGAGCACAATGAATAAGTCAATTTTTGAAGCGGGGTTGAACTGTGCCAGTGGTGGAATATCTGGCGAACATTGTTTTTTGTTGGTGACCCAAAACTGTAGGTGGGTATCAGTTTTAt                                                                >  2:1043736/1‑151 (MQ=255)
                                                                                     ttttATTCAACCTGAACGGACTACGAAAATGAGCACAATGAATAAGTCAATTTTTGAAGCGGGGTTGAACTGTGCCAGTGGTGGAATATCTGGCGAACATTGTTTTTTGTTGGTGACCCAAAACTGTAGGTGGGTATCAGTTTTATCTTTc                                                           >  2:117780/1‑151 (MQ=255)
                                                                                       ttATTCAACCTGAACGGACTACGAAAATGAGCACAATGAATAAGTCAATTTTTGAAGCGGGGTTGAACTGTGCCAGTGGTGGAATATCTGGCGAACATTGTTTTTTGTTGGTGACCCAAAACTGTAGGTGGGTATCAGTTTTATCTTTCa                                                          <  1:176247/150‑1 (MQ=255)
                                                                                         aTTCAACCTGAACGGACTACGAAAATGAGCACAATGAATAAGTCAATTTTTGAAGCGGGGTTGAACTGTGCCAGTGGTGGAATATCTGGCGAAAATTGTTTTTTGTTGGTGACCCAAAACTGTAGGTGGGTATCAGTTTTATCTTTCAt                                                         >  2:828469/1‑149 (MQ=255)
                                                                                           tCAACCTGAACGGACTACGAAAATGAGCACAATGAATAAGTCAATTTTTGAAGCGGGGTTGAACTGTGCCAGTGGTGGAATATCTGGCGAACATTGTTTTTTGTTGGTGACCCAAAACTGTAGGTGGGTATCAGTTTTATCTTTCATaga                                                      <  2:621178/150‑1 (MQ=255)
                                                                                           tCAACCTGAACGGACTACGAAAATGAGCACAATGAATAAGTCAATTTTTGAAGCGGGGTTGAACTGTGCCAGTGGTGGAATATCTGGCGAACATTGTTTTTTGTTGGTGACCCAAAACTGTAGGTGGGTATCAGTTTTATCTTTCATag                                                       >  2:1039217/1‑149 (MQ=255)
                                                                                            cAACCTGAACGGACTACGAAAATGAGCACAATGAATAAGTCAATTTTTGAAGCGGGGTTGAACTGTGCCAGTGGTGGAATATCTGGCGAACATTGTTTTTTGTTGGTGACCCAAAACTGTAGGTGGGTATCAGTTTTATCTTTCATagag                                                     <  1:580155/150‑1 (MQ=255)
                                                                                              aCCTGAACGGACTACGAAAATGAGCACAATGAATAAGTCAATTTTTGAAGCGGGGTTGAACTGTGCCAGTGGTGGAATATCTGGCGAACATTGTTTTTTGTTGGTGACCCAAAACTGTAGGTGGGTATCAGTTTTATCTTTCATAGAGTg                                                   >  1:156408/1‑150 (MQ=255)
                                                                                              aCCTGAACGGACTACGAAAATGAGCACAATGAATAAGTCAATTTTTGAAGCGGGGTTGAACTGTGCCAGTGGTGGAATATCTGGCGAACATTGTTTTTTGTTGGTGACCCAAAACTGTAGGTGGGTATCAGTTTTATCTTTCATAGAGTGa                                                  <  1:556766/151‑1 (MQ=255)
                                                                                               ccTGAACGGACTACGAAAATGAGCACAATGAATAAGTCAATTTTTGAAGCGGGGTTGAACTGTGCCAGTGGTGGAATATCTGGCGAACATTGTTTTTTGTTGGTGACCCAAAACTGTAGGTGGGTATCAGTTTTATCTTTCATAGAGTGaa                                                 <  1:279749/151‑1 (MQ=255)
                                                                                                   aaCGGACTACGAAAATGAGCACAATGAATAAGTCAATTTTTGAAGCGGGGTTGAACTGTGCCAGTGGTGGAATATCTGGCGAACATTGTTTTTTGTTGGTGACCCAAAACTGTAGGTGGGTATCAGTTTTATCTTTCATAGAGTGAAatat                                             <  1:242004/151‑1 (MQ=255)
                                                                                                             gAAAATGAGCACAATGAATAAGTCAATTTTTGAAGCGGGGTTGAACTGTGCCAGTGGTGGAATATCTGGCGAACATTGTTTTTTGTTGGTGACCCAAAACTGTAGGTGGGTATCAGTTTTATCTTTCATAGAGTGAAATATGTTaaga                                      >  2:743360/1‑148 (MQ=255)
                                                                                                                   gAGCACAATGAATAAGTCAATTTTTGAAGCGGGGTTGAACTGTGCCAGTGGTGGAATATCTGGCGAACATTGTTTTTTGTTGGTGACCCAAAACTGTAGGTGGGTATCAGTTTTATCTTTCATAGAGTGAAATATGTTAAGAAGAAATgg                              >  1:737647/1‑150 (MQ=255)
                                                                                                                   gAGCACAATGAATAAGTCAATTTTTGAAGCGGGGTTGAACTGTGCCAGTGGTGGAATATCTGGCGAACATTGTTTTTTGTTGGTGACCCAAAACTGTAGGTGGGTATCAGTTTTATCTTTCATAGAGTGAAATATGTTAAGAAGAAATgg                              >  2:142472/1‑150 (MQ=255)
                                                                                                                     gCACAATGAATAAGTCAATTTTTGAAGCGGGGTTGAACTGTGCCAGTGGTGGAATATCTGGCGAACATTGTTTTTTGTTGGTGACCCAAAACTGTAGGTGGGTATCAGTTTTATCTTTCATAGAGTGAAATATGTTAAGAAGAAATggagg                           >  2:92165/1‑151 (MQ=255)
                                                                                                                            gAATAAGTCAATTTTTGAAGCGGGGTTGAACTGTGCCAGTGGTGGAATATCTGGCGAACATTGTTTTTTGTTGGTGACCCAAAACTGTAGGTGGGTATCAGTTTTATCTTTCATAGAGTGAAATATGTTAAGAAGAAATGGAGGAAAAGa                     <  1:1061766/150‑1 (MQ=255)
                                                                                                                              aTAAGTCAATTTTTGAAGCGGGGTTGAACTGTGCCAGTGGTGGAATATCTGGCGAACATTGTTTTTTGTTGGTGACCCAAAACTGTAGGTGGGTATCAGTTTTATCTTTCATAGAGTGAAATATGTTAAGAAGAAATGGAGGAAAAGATTg                  >  2:500082/1‑151 (MQ=255)
                                                                                                                                aaGTCAATTTTTGAAGCGGGGTTGAACTGTGCCAGTGGTGGAATATCTGGCGAACATTGTTTTTTGTTGGTGACCCAAAACTGTAGGTGGGTATCAGTTTTATCTTTCATAGAGTGAAATATGTTAAGAAGAAATGGAGGAAAAGATTGt                 <  2:1017632/150‑1 (MQ=255)
                                                                                                                                   tCAATTTTTGAAGCGGGGTTGAACTGTGCCAGTGGTGGAATATCTGGCGAACATTGTTTTTTGTTGGTGACCCAAAACTGTAGGTGGGTATCAGTTTTATCTTTCATAGAGTGAAATATGTTAAGAAGAAATGGAGGAAAAGATTGTACTg             >  1:1045145/1‑151 (MQ=255)
                                                                                                                                     aaTTTTTGAAGCGGGGTTGAACTGTGCCAGTGGTGGAATATCTGGCGAACATTGTTTTTTGTTGGTGACCCAAAACTGTAGGTGGGTATCAGTTTTATCTTTCATAGAGTGAAATATGTTAAGAAGAAATGGAGGAAAAGATTGTACTGAt           >  2:809917/1‑151 (MQ=255)
                                                                                                                                      aTTTTTGAAGCGGGGTTGAACTGTGCCAGTGGTGGAATATCTGGCGAACATTGTTTTTTGTTGGTGACCCAAAACTGTAGGTGGGTATCAGTTTTATCTTTCATAGAGTGAAATATGTTAAGAAGAAATGGAGGAAAAGATTGTACTGAtt          >  2:429091/1‑151 (MQ=255)
                                                                                                                                       tttttGAAGCGGGGTTGAACTGTGCCAGTGGTGGAATATCTGGCGAACATTGTTTTTTGTTGGTGACCCAAAACTGTAGGTGGGTATCAGTTTTATCTTTCACAGAGTGAAATATGTTAAGAAGAAATGGAGGAAAAGATTGTACTGAtt          >  1:745809/1‑150 (MQ=255)
                                                                                                                                           tGAAGCGGGGTTGAACTGTGCCAGTGGTGGAATATCTGGCGAACATTGTTTTTTGTTGGTGACCCAAAACTGTAGGTGGGTATCAGTTTTATCTTTCATAGAGTGAAATATGTTAAGAAGAAATGGAGGAAAAGATTGTACTGATTAGGt      <  2:330752/150‑1 (MQ=255)
                                                                                                                                            gAAGCGGGGTTGAACTGTGCCAGTGGTGGAATATCTGGCGAACATTGTTTTTTGTTGGTGACCCAAAACTGTAGGTGGGTATCAGTTTTATCTTTCATAGAGTGAAATATGTTAAGAAGAAATGGAGGAAAAGATTGTACTGATTAGGTAt    <  2:573249/151‑1 (MQ=255)
                                                                                                                                             aaGCGGGGTTGAACTGTGCCAGTGGTGGAATATCTGGCGAACATTGTTTTTTGTTGGTGACCCAAAACTGTAGGTGGGGATCAGTTTTATCTTTCATAGAGTGAAATATGTTAAGAAGAAATGGAGGAAAAGATTGTACTGATTAGGTAtt   >  2:665340/1‑151 (MQ=255)
                                                                                                                                              aGCGGGGTTGAACTGTGCCAGTGGTGGAATATCTGGCGAACATTGTTTTTTGTTGGTGACCCAAAACTGTAGGTGGGTATCAGTTTTATCTTTCATAGAGTGAAATATGTTAAGAAGAAATGGAGGAAAAGATTGTACTGATTAGGTATTg  >  2:1065628/1‑151 (MQ=255)
                                                                                                                                                 |                                                                                                                                                   
AAGCAAAGAAATACTGCAAAGGAAAACAGCTATAACGTAAGCTAAAGTAATAACCTCTCAGTCTTTCCTCATTTGACGAAGGGAGTTTTATTCAACCTGAACGGACTACGAAAATGAGCACAATGAATAAGTCAATTTTTGAAGCAGGGTTGAACTGTGCCAGTGGTGGAATATCTGGCGAACATTGTTTTTTGTTGGTGACCCAAAACTGTAGGTGGGTATCAGTTTTATCTTTCATAGAGTGAAATATGTTAAGAAGAAATGGAGGAAAAGATTGTACTGATTAGGTATTG  >  NC_000913/4503652‑4503944

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A