Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A7 F50 I1 R1
|
121 |
119.5 |
3777739 |
97.6% |
3687073 |
150.2 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| MC JC |
NC_000913 |
3,018,356 |
(GTC)4→3 |
coding (2297‑2299/3099 nt) |
ygfK → |
putative Fe‑S subunit oxidoreductase subunit |
|
| | | | seq id |
start |
end |
size |
←reads |
reads→ |
gene |
description |
|---|
| * |
* |
÷ |
NC_000913 |
3018347 |
3018349 |
3 |
109 [0] |
[0] 110 |
ygfK |
putative Fe‑S subunit oxidoreductase subunit |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
NC_000913 |
3018350 = | 0 (0.000) | 102 (0.920) |
84/280 |
0.3 |
100% |
coding (2291/3099 nt) |
ygfK |
putative Fe‑S subunit oxidoreductase subunit |
| ? | NC_000913 |
= 3018346 |
0 (0.000) | coding (2287/3099 nt) |
ygfK |
putative Fe‑S subunit oxidoreductase subunit |
GATK/CNVnator alignment
N/A
