Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A3 F50 I3 R1 160 117.2 4331776 85.4% 3699336 149.7

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,789,720 T→C N121S (AAC→AGC)  waaH ← LPS(HepIII)‑glucuronic acid glycosyltransferase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,789,7200TC98.8% 306.8 / ‑4.2 84N121S (AAC→AGC) waaHLPS(HepIII)‑glucuronic acid glycosyltransferase
Reads supporting (aligned to +/- strand):  ref base T (0/1);  new base C (45/38);  total (45/39)
Fisher's exact test for biased strand distribution p-value = 4.64e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.68e-01

AACCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGCCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTCACGAAAACACCAGTCAGCGTTGCACTGCGCCACGTCGAGGTCGTCCTCTAACGCCATGGTCATCAGCGTTTCGTACATGGTGGGATAGACTTCATCGTCAGCATCGACAAAAGCGACATATTTGCCCGTTGCCACTTCAATCCCACGATTACGCGCCACCGATGCGC  >  NC_000913/3789572‑3789867
                                                                                                                                                    |                                                                                                                                                   
aaCCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGCCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTCACGAAAACACCAGTCAGCGCTg                                                                                                                                                   <  4:1189757/151‑1 (MQ=255)
 aCCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGCCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTCACGAAAACACCAGTCAGCGCTGc                                                                                                                                                  >  2:139833/1‑151 (MQ=255)
  cccccATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGCCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTCACGAAAACACCAGTCAGCGCTGCa                                                                                                                                                 <  2:504740/151‑1 (MQ=255)
  cccccATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGCCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTCACGAAAACACCAGTCAGCGCTGCa                                                                                                                                                 <  4:1444136/151‑1 (MQ=255)
      cATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGCCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTCACGAAAACACCAGTCAGCGCTGCACTgc                                                                                                                                             <  2:1598716/151‑1 (MQ=255)
       aTCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGCCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTCACGAAAACACCAGTCAGCGCTGCACTgcg                                                                                                                                            >  2:1546279/1‑151 (MQ=255)
         cccgACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGCCGGTTAATACGCCGGAAGAGCGAAGGCGATCGGTGGGGATGGATTACCAGGTTTCTCCCGTTTAACGAAAACACCAGTCAGCGCTGCACTgc                                                                                                                                             >  1:8287/4‑148 (MQ=255)
         ccAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGCCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTCACGAAAACACCAGTCAGCGCTGCACTgcgc                                                                                                                                           <  4:1610676/150‑1 (MQ=255)
          cAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGCCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTCACGAAAACACCAGTCAGCGCTGCACTGCGcc                                                                                                                                          >  3:125070/1‑150 (MQ=255)
           aGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGCCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTCACGAAAACACCAGTCAGCGCTGCACTGCGCCAc                                                                                                                                        <  4:701661/151‑1 (MQ=255)
              cAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGCCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTCACGAAAACACCAGTCAGCGCTGCACTGCGCCACGTc                                                                                                                                     <  4:475442/151‑1 (MQ=255)
                     aGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGCCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTCACGAAAACACCAGTCAGCGCTGCACTGCGCCACGTCGAGgtcg                                                                                                                              <  1:167545/151‑1 (MQ=255)
                             ggCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGCCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTCACGAAAACACCAGTCAGCGCTGCACTGCGCCACGTCGAGGTCGTCCTCTaa                                                                                                                      <  4:1461408/151‑1 (MQ=255)
                             ggCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGCCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTCACGAAAACACCAGTCAGCGCTGCACTGCGCCACGTCGAGGTCGTCCTCTa                                                                                                                       >  4:1673228/1‑150 (MQ=255)
                              gcgcGAAGAAAGCCCCATCCGCAGCCAGTCCGGGCCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTCACGAAAACACCAGTCAGCGCTGCACTGCGCCACGTCGAGGTCGTCCTCTa                                                                                                                       <  4:564216/149‑1 (MQ=255)
                              gcgcGAAGAAAGCCCCATCCGCAGCCAGTCCGGGCCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTCACGAAAACACCAGTCAGCGCTGCACTGCGCCACGTCGAGGTCGTCCTCTAAc                                                                                                                     <  4:1597155/151‑1 (MQ=255)
                               cgcgAAGAAAGCCCCAACCGCAGCCAGTCCTGGCCGGTTAATACGACGGTTGAGCGAAGTCTATCGTTGTGTATAGATTGCCAAGATTCTCCCGTTTCACGAAAACACCAGTTTTCGTTGCACTGCGCCACGTTGAGGTCGTCCTCTAAc                                                                                                                     <  1:351107/150‑1 (MQ=255)
                                gcgAAGAAAGCCCCATCCGCAGCCAGTCCGGGCCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTCACGAAAACACCAGTCAGCGCTGCACTGCGCCACGTCGAGGTCGTCCTCTAACGc                                                                                                                   >  2:1343537/1‑151 (MQ=255)
                                gcgAAGAAAGCCCCATCCGCAGCCAGTCCGGGCCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTCACGAAAACACCAGTCAGCGCTGCACTGCGCCACGTCGAGGTCGTCCTCTAACGc                                                                                                                   >  2:238256/1‑151 (MQ=255)
                                 cgAAGAAAGCCCCATCCGCAGCCAGTCCGGGCCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTCACGAAAACACCAGTCAGCGCTGCACTGCGCCACGTCGAGGTCGTCCTCTAACGcc                                                                                                                  >  3:85022/1‑151 (MQ=255)
                                  gaagaaAGCCCCATCCGCAGCCAGTCCGGGCCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTCACGAAAACACCAGTCAGCGCTGCACTGCGCCACGTCGAGGTCGTCCTCTAACGcc                                                                                                                  >  2:190434/1‑150 (MQ=255)
                                  gaagaaAGCCCCATCCGCAGCCAGTCCGGGCCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTCACGAAAACACCAGTCAGCGCTGCACTGCGCCACGTCGAGGTCGTCCTCTAACGCCa                                                                                                                 <  4:107556/151‑1 (MQ=255)
                                    agaaAGCCCCATCCGCAGCCAGTCCGGGCCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTCACGAAAACACCAGTCAGCGCTGCACTGCGCCACGTCGAGGTCGTCCTCTAACGCCATg                                                                                                               >  4:1369407/1‑151 (MQ=255)
                                         gCCCCATCCGCAGCCAGTCCGGGCCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTCACGAAAACACCAGTCAGCGCTGCACTGCGCCACGTCGAGGTCGTCCTCTAACGCCATGGtcat                                                                                                          <  2:24861/151‑1 (MQ=255)
                                           cccATCCGCAGCCAGTCCGGGCCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTCACGAAAACACCAGTCAGCGCTGCACTGCGCCACGTCGAGGTCGTCCTCTAACGCCATGGtcatca                                                                                                        <  4:1068032/151‑1 (MQ=255)
                                             cATCCGCAGCCAGTCCGGGCCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTCACGAAAACACCAGTCAGCGCTGCACTGCGCCACGTCGAGGTCGTCCTCTAACGCCATGGTCATCAGc                                                                                                      <  2:782706/151‑1 (MQ=255)
                                               tCCGCAGCCAGTCCGGGCCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTCACGAAAACACCAGTCAGCGCTGCACTGCGCCACGTCGAGGTCGTCCTCTAACGCCATGGTCATCAGCg                                                                                                     <  2:482708/150‑1 (MQ=255)
                                                 cGCAGCCAGTCCGGGCCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTCACGAAAACACCAGTCAGCGCTGCACTGCGCCACGTCGAGGTCGTCCTCTAACGCCATGGTCATCAGCGttt                                                                                                  >  4:1177918/1‑151 (MQ=255)
                                                     gCCAGTCCGGGCCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTCACGAAAACACCAGTCAGCGCTGCACTGCGCCACGTCGAGGTCGTCCTCTAACGCCATGGTCATCAGCGTTTCGt                                                                                               >  2:927817/1‑150 (MQ=255)
                                                       cAGTCCGGGCCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTCACGAAAACACCAGTCAGCGCTGCACTGCGCCACGTCGAGGTCGTCCTCTAACGCCATGGTCATCAGCGTTTCGTACa                                                                                            <  2:1624486/151‑1 (MQ=255)
                                                        aGTCCGGGCCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTCACGAAAACACCAGTCAGCGCTGCACTGCGCCACGTCGAGGTCGTCCTCTAACGCCATGGTCATCAGCGTTTCGTACAt                                                                                           >  4:1101553/1‑151 (MQ=255)
                                                         gTCCGGGCCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTCACGAAAACACCAGTCAGCGCTGCACTGCGCCACGTCGAGGTCGTCCTCTAACGCCATGGTCATCAGCGTTTCGTACAtg                                                                                          <  2:1482420/151‑1 (MQ=255)
                                                          tCCGGGCCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTCACGAAAACACCAGTCAGCGCTGCACTGCGCCACGTCGAGGTCGTCCTCTAACGCCATGGTCATCAGCGTTTCGTACAtgg                                                                                         >  4:75426/1‑151 (MQ=255)
                                                           ccGGGCCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTCACGAAAACACCAGTCAGCGCTGCACTGCGCCACGTCGAGGTCGTCCTCTAACGCCATGGTCATCAGCGTTTCGTACAtggt                                                                                        >  2:1555791/1‑151 (MQ=255)
                                                           ccGGGCCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTCACGAAAACACCAGTCAGCGCTGCACTGCGCCACGTCGAGGTCGTCCTCTAACGCCATGGTCATCAGCGTTTCGTACAtggt                                                                                        <  4:647720/151‑1 (MQ=255)
                                                             tggCCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTCACGAAAACACCAGTCAGCGCTGCACTGCGCCACGTCGAGGTCGTCCTCTAACGCCATGGTCATCAGCGTTTCGTACAtggtgg                                                                                      >  2:274591/2‑151 (MQ=255)
                                                                 cGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTCACGAAAACACCAGTCAGCGCTGCACTGCGCCACGTCGAGGTCGTCCTCTAACGCCATGGTCATCAGCGTTTCGTACATGGTGGGAt                                                                                   >  2:128536/1‑150 (MQ=255)
                                                                 cGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTCACGAAAACACCAGTCAGCGCTGCACTGCGCCACGTCGAGGTCGTCCTCTAACGCCATGGTCATCAGCGTTTCGTACATGGTGGGATa                                                                                  <  1:81656/151‑1 (MQ=255)
                                                                  ggTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTCACGAAAACACCAGTCAGCGCTGCACTGCGCCACGTCGAGGTCGTCCTCTAACGCCATGGTCATCAGCGTTTCGTACATGGTGGGAt                                                                                   >  3:285923/1‑149 (MQ=255)
                                                                     tAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTCACGAAAACACCAGTCAGCGCTGCACTGCGCCACGTCGAGGTCGTCCTCTAACGCCATGGTCATCAGCGTTTCGTACATGGTGGGATAGACt                                                                              >  4:1393337/1‑151 (MQ=255)
                                                                      aaTACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTCACGAAAACACCAGTCAGCGCTGCACTGCGCCACGTCGAGGTCGTCCTCTAACGCCATGGTCATCAGCGTTTCGTACATGGTGGGATAGACtt                                                                             <  2:361422/151‑1 (MQ=255)
                                                                      aaTACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTCACGAAAACACCAGTCAGCGCTGCACTGCGCCACGTCGAGGTCGTCCTCTAACGCCATGGTCATCAGCGTTTCGTACATGGTGGGATAGACtt                                                                             >  2:1110398/1‑151 (MQ=255)
                                                                         aCGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTCACGAAAACACCAGTCAGCGCTGCACTGCGCCACGTCGAGGTCGTCCTCTAACGCCATGGTCATCAGCGTTTCGTACATGGTGGGATAGACTTCa                                                                           <  2:455855/150‑1 (MQ=255)
                                                                         aCGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTCACGAAAACACCAGTCAGCGCTGCACTGCGCCACGTCGAGGTCGTCCTCTAACGCCATGGTCATCAGCGTTTCGTACATGGTGGGATAGACTTCa                                                                           <  3:213494/150‑1 (MQ=255)
                                                                         aCGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTCACGAAAACACCAGTCAGCGCTGCACTGCGCCACGTCGAGGTCGTCCTCTAACGCCATGGTCATCAGCGTTTCGTACATGGTGGGATAGACTTCAt                                                                          >  3:194615/1‑151 (MQ=255)
                                                                           gCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTCACGAAAACACCAGTCAGCGCTGCACTGCGCCACGTCGAGGTCGTCCTCTAACGCCATGGTCATCAGCGTTTCGTACATGGTGGGATAGACTTCATCg                                                                        >  1:402337/1‑151 (MQ=255)
                                                                            ccGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTCACGAAAACACCAGTCAGCGCTGCACTGCGCCACGTCGAGGTCGTCCTCTAACGCCATGGTCATCAGCGTTTCGTACATGGTGGGATAGACTTCATCGt                                                                       <  2:268493/151‑1 (MQ=255)
                                                                             cGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTCACGAAAACACCAGTCAGCGCTGCACTGCGCCACGTCGAGGTCGTCCTCTAACGCCATGGTCATCAGCGTTTCGTACATGGTGGGATAGACTTCATCGTc                                                                      <  2:741347/151‑1 (MQ=255)
                                                                               gTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTCACGAAAACACCAGTCAGCGCTGCACTGCGCCACGTCGAGGTCGTCCTCTAACGCCATGGTCATCAGCGtt                                                                                                   <  2:710619/120‑1 (MQ=255)
                                                                               gTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTCACGAAAACACCAGTCAGCGCTGCACTGCGCCACGTCGAGGTCGTCCTCTAACGCCATGGTCATCAGCGtt                                                                                                   >  4:711572/1‑120 (MQ=255)
                                                                                ttGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTCACGAAAACACCAGTCAGCGCTGCACTGCGCCACGTCGAGGTCGTCCTCTAACGCCATGGTCATCAGCGTTTCGTACATGGTGGGATAGACTTCATCGTCAGc                                                                   >  2:1511901/1‑151 (MQ=255)
                                                                                 tGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTCACGAAAACACCAGTCAGCGCTGCACTGCGCCACGTCGAGGTCGTCCTCTAACGCCATGGTCATCAGCGTTTCGTACATGGTGGGATAGACTTCATCGTCAGc                                                                   <  4:373379/150‑1 (MQ=255)
                                                                                   aGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTCACGAAAACACCAGTCAGCGCTGCACTGCGCCACGTCGAGGTCGTCCTCTAACGCCATGGTCATCAGCGTTTCGTACATGGTGGGATAGACTTCATCGTCAGCATc                                                                <  4:1442995/151‑1 (MQ=255)
                                                                                     cGAAGGCGATCGGTGGGGATGGATTGACAGGTTTCTCCCGTTTCACGAAAACACCAGTCAGCGCTGCACTGCGCCACGTCGAGGTCGTCCTCTAACGCCATGGTCATCAGCGTTTCGTACATGGTGGGATAGACTTCATCGTCAGCATCGa                                                              <  1:22306/151‑1 (MQ=255)
                                                                                           cGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTCACGAAAACACCAGTCAGCGCTGCACTGCGCCACGTCGAGGTCGTCCTCTAACGCCATGGTCATCAGCGTTTCGTACATGGTGGGATAGACTTCATCGTCAGCATCGACaaa                                                          >  4:631504/1‑149 (MQ=255)
                                                                                            gATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTCACGAAAACACCAGTCAGCGCTGCACTGCGCCACGTCGAGGTCGTCCTCTAACGCCATGGTCATCAGCGTTTCGTACATGGTGGGATAGACTTCATCGTCAGCATCGACAAAAGc                                                       >  1:353489/1‑151 (MQ=255)
                                                                                            gATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTCACGAAAACACCAGTCAGCGCTGCACTGCGCCACGTCGAGGTCGTCCTCTAACGCCATGGTCATCAGCGTTTCGTACATGGTGGGATAGACTTCATCGTCAGCATCGACAAAAGc                                                       >  1:324096/1‑151 (MQ=255)
                                                                                             aTCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTCACGAAAACACCAGTCAGCGCTGCACTGCGCCACGTCGAGGTCGTCCTCTAACGCCATGGTCATCAGCGTTTCGTACATGGTGGGATAGACTTCATCGTCAGCATCGACAAAAGCg                                                      <  1:102339/151‑1 (MQ=255)
                                                                                              tCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTCACGAAAACACCAGTCAGCGCTGCACTGCGCCACGTCGAGGTCGTCCTCTAACGCCATGGTCATCAGCGTTTCGTACATGGTGGGATAGACTTCATCGTCAGCATCGACAAAAGCg                                                      >  2:426993/1‑150 (MQ=255)
                                                                                                ggTGGGGATGGATTGCCAGGTTTCTCCCGTTTCACGAAAACACCAGTCAGCGCTGCACTGCGCCACGTCGAGGTCGTCCTCTAACGCCATGGTCATCAGCGTTTCGTACATGGTGGGATAGACTTCATCGTCAGCATCGACAAAAGCGAc                                                    >  4:592848/1‑150 (MQ=255)
                                                                                                 gTGGGGATGGATTGCCAGGTTTCTCCCGTTTCACGAAAACACCAGTCAGCGCTGCACTGCGCCACGTCGAGGTCGTCCTCTAACGCCATGGTCATCAGCGTTTCGTACGTGGTGGGATAGACTTCATCGTCAGCATCGACAAAAGCGACat                                                  >  4:1380688/1‑151 (MQ=255)
                                                                                                     tgatggatTGCCAGGTTTCTCCCGTTTCACGAAAACACCAGTCAGCGCTGCACTGCGCCACGTCGAGGTCGTCCTCTAACGCCATGGTCATCAGCGTTTCGTACATGGTGGGATAGACTTCATCGTCAGCATCGACAAAAGCGACATAttt                                              >  2:258078/2‑151 (MQ=255)
                                                                                                      gatggatTGCCAGGTTTCTCCCGTTTCACGAAAACACCAGTCAGCGCTGCACTGCGCCACGTCGAGGTCGTCCTCTAACGCCATGGTCATCAGCGTTTCGTACATGGTGGGATAGACTTCATCGTCAGCATCGACAAAAGCGACATATTTg                                             <  3:170349/151‑1 (MQ=255)
                                                                                                        tggatTGCCAGGTTTCTCCCGTTTCACGAAAACACCAGTCAGCGCTGCACTGCGCCACGTCGAGGTCGTCCTCTAACGCCATGGTCATCAGCGTTTCGTACATGGTGGGATAGACTTCATCGTCAGCATCGACAAAAGCGACATATTTGcc                                           >  3:404206/1‑151 (MQ=255)
                                                                                                          gatTGCCAGGTTTCTCCCGTTTCACGAAAACACCAGTCAGCGCTGCACTGCGCCACGTCGAGGTCGTCCTCTAACGCCATGGTCATCAGCGTTTCGTACATGGTGGGATAGACTTCATCGTCAGCATCGACAAAAGCGACATATTTGCCCg                                         >  4:1257490/1‑151 (MQ=255)
                                                                                                          gatTGCCAGGTTTCTCCCGTTTCACGAAAACACCAGTCAGCGCTGCACTGCGCCACGTCGAGGTCGTCCTCTAACGCCATGGTCATCAGCGTTTCGTACATGGTGGGATAGACTTCATCGTCAGCATCGACAAAAGCGACATATTTGCCCg                                         >  4:68850/1‑151 (MQ=255)
                                                                                                                cAGGTTTCTCCCGTTTCACGAAAACACCAGTCAGCGCTGCACTGCGCCACGTCGAGGTCGTCCTCTAACGCCATGGTCATCAGCGTTTCGTACATGGTGGGATAGACTTCATCGTCAGCATCGACAAAAGCGACATATTTGCCCGTTGcc                                    >  4:694699/1‑150 (MQ=255)
                                                                                                                cAGGTTTCTCCCGTTTCACGAAAACACCAGTCAGCGCTGCACTGCGCCACGTCGAGGTCGTCCTCTAACGCCATGGTCATCAGCGTTTCGTACATGGTGGGATAGACTTCATCGTCAGCATCGACAAAAGCGACATATTTGCCCGTTGcc                                    >  4:1419708/1‑150 (MQ=255)
                                                                                                                  ggTTTCTCCCGTTTCACGAAAACACCAGTCAGCGCTGCACTGCGCCACGTCGAGGTCGTCCTCTAACGCCATGGTCATCAGCGTTTCGTACATGGTGGGATAGACTTCATCGTCAGCATCGACAAAAGCGACATATTTGCCCGTTGCCACt                                 <  2:388999/151‑1 (MQ=255)
                                                                                                                     ttCTCCCGTTTCACGAAAACACCAGTCAGCGCTGCACTGCGCCACGTCGAGGTCGTCCTCTAACGCCATGGTCATCAGCGTTTCGTACATGGTGGGATAGACTTCATCGTCAGCATCGACAAAAGCGACATATTTGCCCGTTGCCACTTc                               >  2:901227/1‑150 (MQ=255)
                                                                                                                        tcCCGTTTCACGAAAACACCAGTCAGCGCTGCACTGCGCCACGTCGAGGTCGTCCTCTAACGCCATGGTCATCAGCGTTTCGTACATGGTGGGATAGACTTCATCGTCAGCATCGACAAAAGCGACATATTTGCCCGTTGCCACTTCAATc                           >  2:240631/1‑151 (MQ=255)
                                                                                                                         cccGTTTCACGAAAACACCAGTCAGCGCTGCACTGCGCCACGTCGAGGTCGTCCTCTAACGCCATGGTCATCAGCGTTTCGTACATGGTGGGATAGACTTCATCGTCAGCATCGACAAAAGCGACATATTTGCCCGTTGCCACTTCAATc                           <  2:1176437/150‑1 (MQ=255)
                                                                                                                          ccGTTTCACGAAAACACCAGTCAGCGCTGCACTGCGCCACGTCGAGGTCGTCCTCTAACGCCATGGTCATCAGCGTTTCGTACATGGTGGGATAGACTTCATCGTCAGCATCGACAAAAGCGACATATTTGCCCGTTGCCACTTCAATccc                         <  2:576374/151‑1 (MQ=255)
                                                                                                                               tCACGAAAACACCAGTCAGCGCTGCACTGCGCCACGTCGAGGTCGTCCTCTAACGCCATGGTCATCAGCGTTTCGTACATGGTGGGATAGACTTCATCGTCAGCATCGACAAAAGCGACATATTTGCCCGTTGCCACTTCAATCCCACGAt                    >  4:567479/1‑151 (MQ=255)
                                                                                                                                  cGAAAACACCAGTCAGCGCTGCACTGCGCCACGTCGAGGTCGTCCTCTAACGCCATGGTCATCAGCGTTTCGTACATGGTGGGATAGACTTCATCGTCAGCATCGACAAAAGCGACATATTTGCCCGTTGCCACTTCAATCCCACGATTAc                 <  1:285907/151‑1 (MQ=255)
                                                                                                                                   gAAAACACCAGTCAGCGCTGCACTGCGCCACGTCGAGGTCGTCCTCTAACGCCATGGTCATCAGCGTTTCGTACATGGTGGGATAGACTTCATCGTCAGCATCGACAAAAGCGACATATTTGCCCGTTGCCACTTCAATCCCACGATTAcg                <  2:77794/151‑1 (MQ=255)
                                                                                                                                     aaaCACCAGTCAGCGCTGCACTGCGCCACGTCGAGGTCGTCCTCTAACGCCATGGTCATCAGCGTTTCGTACATGGTGGGATAGACTTCATCGTCAGCATCGACAAAAGCGACATATTTGCCCGTTGCCACTTCAATCCCACGATTAcgcg              >  2:488281/1‑151 (MQ=255)
                                                                                                                                          ccAGTCAGCGCTGCACTGCGCCACGTCGAGGTCGTCCTCTAACGCCATGGTCATCAGCGTTTCGTACATGGTGGGATAGACTTCATCGTCAGCATCGACAAAAGCGACATATTTGCCCGTTGCCACTTCAATCCCACGATTACGCGCCAcc         >  2:1684199/1‑151 (MQ=255)
                                                                                                                                           cAGTCAGCGCTGCACTGCGCCACGTCGAGGTCGTCCTCTAACGCCATGGTCATCAGCGTTTCGTACATGGTGGGATAGACTTCATCGTCAGCATCGACAAAAGCGACATATTTGCCCGTTGCCACTTCAATCCCACGATTACGCGCCACCg        >  2:691133/1‑151 (MQ=255)
                                                                                                                                            aGTCAGCGCTGCACTGCGCCACGTCGAGGTCGTCCTCTAACGCCATGGTCATCAGCGTTTCGTACATGGTGGGATAGACTTCATCGTCAGCATCGACAAAAGCGACATATTTGCCCGTTGCCACTTCAATCCCACGATTACGCGCCACCg        >  4:620673/1‑150 (MQ=255)
                                                                                                                                            aGTCAGCGCTGCACTGCGCCACGGCGAGGTCGTCCTCTAACGCCATGGTCATCAGCGTTTCGTACATGGTGGGATAGACTTCATCGTCAGCATCGACAAAAGCGACATATTTGCCCGTTGCCACTTCAATCCCCCGATTACGCGCCAca         <  2:1374223/149‑2 (MQ=255)
                                                                                                                                              tCAGCGCTGCACTGCGCCACGTCGAGGTCGTCCTCTAACGCCATGGTCATCAGCGTTTCGTACATGGTGGGATAGACTTCATCGTCAGCATCGACAAAAGCGACATATTTGCCCGTTGCCACTTCAATCCCACGATTACGCGCCACCGATg     >  4:166798/1‑151 (MQ=255)
                                                                                                                                               cAGCGCTGCACTGCGCCACGTCGAGGTCGTCCTCTAACGCCATGGTCATCAGCGTTTCGTACATGGTGGGATAGACTTCATCGTCAGCATCGACAAAAGCGACATATTTGCCCGTTGCCACTTCAATCCCACGATTACGCGCCACCGATg     <  2:1656811/150‑1 (MQ=255)
                                                                                                                                               cAGCGCTGCACTGCGCCACGTCGAGGACGTCCTCTAACGCCATGGTCATCAGCGTTTCGTACATGGTGGGATAGACTTCATCGTCAGCATCGACAAAAGCGACATATTTGCCCGTTGCCACTTCAATCCCACGATTACGCGCCACCGATgc    >  3:122201/1‑151 (MQ=255)
                                                                                                                                                 gcgcTGCACTGCGCCACGTCGAGGTCGTCCTCTAACGCCATGGTCATCAGCGTTTCGTACATGGTGGGATAGACTTCATCGTCAGCATCGACAAAAGCGACATATTTGCCCGTTGCCACTTCAATCCCACGATTACGCGCCACCGATgcgc  >  2:1060235/1‑151 (MQ=255)
                                                                                                                                                 gcgcTGCACTGCGCCACGTCGAGGTCGTCCTCTAACGCCATGGTCATCAGCGTTTCGTACATGGTGGGATAGACTTCATCGTCAGCATCGACAAAAGCGACATATTTGCCCGTTGCCACTTCAATCCCACGATTACGCGCCACCGATgcgc  <  4:1548191/151‑1 (MQ=255)
                                                                                                                                                    |                                                                                                                                                   
AACCCCCATCCAGACAACGTGAGTCCAACGGCGCGAAGAAAGCCCCATCCGCAGCCAGTCCGGGCCGGTTAATACGCCGGTTGAGCGAAGGCGATCGGTGGGGATGGATTGCCAGGTTTCTCCCGTTTCACGAAAACACCAGTCAGCGTTGCACTGCGCCACGTCGAGGTCGTCCTCTAACGCCATGGTCATCAGCGTTTCGTACATGGTGGGATAGACTTCATCGTCAGCATCGACAAAAGCGACATATTTGCCCGTTGCCACTTCAATCCCACGATTACGCGCCACCGATGCGC  >  NC_000913/3789572‑3789867

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A