Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F50 I3 R1 143 109.6 3434427 98.5% 3382910 150.4

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,790,211 T→C intergenic (‑130/+109) waaH ← / ← tdh LPS(HepIII)‑glucuronic acid glycosyltransferase/L‑threonine 3‑dehydrogenase, NAD(P)‑binding

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,790,2110TC99.1% 444.8 / ‑4.3 113intergenic (‑130/+109)waaH/tdhLPS(HepIII)‑glucuronic acid glycosyltransferase/L‑threonine 3‑dehydrogenase, NAD(P)‑binding
Reads supporting (aligned to +/- strand):  ref base T (0/1);  new base C (47/65);  total (47/66)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.51e-01

Only 100 of 113 total aligned reads displayed.

GGTGCTGTTCATCATAAATTACCGACGACCTCTGAAGTTATCCTGACGTTTTACAGGCTTTGTATTAAGAAACTATTAAGCCTGTGAGATATTATTTTTACAGGTGAGAGAGTCACTTCAGGGTAGAGAGATAATGAGAGCAGCTATATAAGAGATCAGCACAATTACGAACTCTTTATTACACTGACAGGATTTTACATATTTAACAGATTATCCTCAGATAAAAGGGCTGGAATACCAGCCCTTGTTCGTGTTAATCCCAGCTCAGAATAACTTTCCCGGACTGGCCCGA  >  NC_000913/3790067‑3790358
                                                                                                                                                |                                                                                                                                                   
ggTGCTGTTCATCATAAATTACCGACGACCTCTGAAGTTATCCTGACGTTTTACAGGCTTTGTATTAAGAAACTATTAAGCCTGTGAGATATTATTTTTACAGGTGAGAGAGTCACTTCAGGGTAGAGAGATAATGAGAGCAGCCATATaa                                                                                                                                               <  1:130947/151‑1 (MQ=255)
 gTGCTGTTCATCATAAATTACCGACGACCTCTGAAGTTATCCTGACGTTTTACAGGCTTTGTATTAAGAAACTATTAAGCCTGTGAGATATTATTTTTACAGGTGAGAGAGTCACTTCAGGGTAGAGAGATAATGAGAGCAGCCATATAag                                                                                                                                              <  2:1617601/151‑1 (MQ=255)
     tGTTCATCATAAATTACCGACGACCTCTGAAGTTATCCTGACGTTTTACAGGCTTTGTATTAAGAAACTATTAAGCCTGTGAGATATTATTTTTACAGGTGAGAGAGTCACTTCAGGGTAGAGAGATAATGAGAGCAGCCATATAag                                                                                                                                              >  2:1076099/1‑147 (MQ=255)
      gTTCATCATAAATTACCGACGACCTCTGAAGTTATCCTGACGTTTTACAGGCTTTGTATTAAGAAACTATTAAGCCTGTGAGATATTATTTTTACAGGTGAGAGAGTCACTTCAGGGTAGAGAGATAATGAGAGCAGCCATATAAgaga                                                                                                                                           <  2:1453022/149‑1 (MQ=255)
      gTTCATCATAAATTACCGACGACCTCTGAAGTTATCCTGACGTTTTACAGGCTTTGTATTAAGAAACTATTAAGCCTGTGAGATATTATTTTTACAGGTGAGAGAGTCACTTCAGGGTAGAGAGATAATGAGAGCAGCCATATAAGAGAt                                                                                                                                          <  1:1303371/150‑1 (MQ=255)
          atcatAAATTACCGACGACCTCTGAAGTTATCCTGACGTTTTACAGGCTTTGTATTAAGAAACTATTAAGCCTGTGAGATATTATTTTTACAGGTGAGAGAGTCACTTCAGGGTAGAGAGATAATGAGAGCAGCCATATAAGAGATCAGc                                                                                                                                      >  2:1356597/1‑150 (MQ=255)
           tcatAAATTACCGACGACCTCTGAAGTTATCCTGACGTTTTACAGGCTTTGTATTAAGAAACTATTAAGCCTGTGAGATATTATTTTTACAGGTGAGAGAGTCACTTCAGGGTAGAGAGATAATGAGAGCAGCCATATAAGAGATCAGcac                                                                                                                                    >  1:1348634/1‑151 (MQ=255)
            catAAATTACCGACGACCTCTGAAGTTATCCTGACGTTTTACAGGCTTTGTATTAAGAAACTATTAAGCCTGTGAGATATTATTTTTACAGGTGAGAGAGTCACTTCAGGGTAGAGAGATAATGAGAGCAGCCATATAAGAGATCAGcaca                                                                                                                                   <  1:643759/151‑1 (MQ=255)
            catAAATTACCGACGACCTCTGAAGTTATCCTGACGTTTTACAGGCTTTGTATTAAGAAACTATTAAGCCTGTGAGATATTATTTTTACAGGTGAGAGAGTCACTTCAGGGTAGAGAGATAATGAGAGCAGCCATATAAGAGATCAGcac                                                                                                                                    <  1:818535/150‑1 (MQ=255)
             atAAATTACCGACGACCTCTGAAGTTATCCTGACGTTTTACAGGCTTTGTATTAAGAAACTATTAAGCCTGTGAGATATTATTTTTACAGGTGAGAGAGTCACTTCAGGGTAGAGAGATAATGAGAGCAGCCATATAAGAGATCAGcaca                                                                                                                                   <  2:1669865/150‑1 (MQ=255)
               aaaTTACCGACGACCTCTGAAGTTATCCTGACGTTTTACAGGCTTTGTATTAAGAAACTATTAAGCCTGTGAGATATTATTTTTACAGGTGAGAGAGTCACTTCAGGGTAGAGAGATAATGAGAGCAGCCATATAAGAGATCAGCACAAt                                                                                                                                 <  2:91628/150‑1 (MQ=255)
                 aTTACCGACGACCTCTGAAGTTATCCTGACGTTTTACAGGCTTTGTATTAAGAAACTATTAAGCCTGTGAGATATTATTTTTACAGGTGAGAGAGTCACTTCAGGGTAGAGAGATAATGAGAGCAGCCATATAAGAGATCAGCACAATTAc                                                                                                                              >  1:463121/1‑151 (MQ=255)
                     ccGACGACCTCTGAAGTTATCCTGACGTTTTACAGGCTTTGTATTAAGAAACTATTAAGCCTGTGAGATATTATTTTTACAGGTGAGAGAGTCACTTCAGGGTAGAGAGATAATGAGAGCAGCCATATAAGAGATCAGCACAATTACGaa                                                                                                                           <  2:1045961/150‑1 (MQ=255)
                     ccGACGACCTCTGAAGTTATCCTGACGTTTTACAGGCTTTGTATTAAGAAACTATTAAGCCTGTGAGATATTATTTTTACAGGTGAGAGAGTCACTTCAGGGTAGAGAGATAATGAGAGCAGCCATATAAGAGATCAGCACAATTACGAAc                                                                                                                          <  1:946818/151‑1 (MQ=255)
                         cgacCTCTGAAGTTATCCTGACGTTTTACAGGCTTTGTATTAAGAAACTATTAAGCCTGTGAGATATTATTTTTACAGGTGAGAGAGTCACTTCAGGGTAGAGAGATAATGAGAGCAGCCATATAAGAGATCAGCACAATTACGAACTCtt                                                                                                                      <  1:379177/151‑1 (MQ=255)
                         cgacCTCTGAAGTTATCCTGACGTTTTACAGGCTTTGTATTAAGAAACTATTAAGCCTGTGAGATATTATTTTTACAGGTGAGAGAGTCACTTCAGGGTAGAGAGATAATGAGAGCAGCCATATAAGAGATCAGCACAATTACGAACTCtt                                                                                                                      <  1:1611239/151‑1 (MQ=255)
                          gacCTCTGAAGTTATCCTGACGTTTTACAGGCTTTGTATTAAGAAACTATTAAGCCTGTGAGATATTATTTTTACAGGTGAGAGAGTCACTTCAGGGTAGAGAGATAATGAGAGCAGCCATATAAGAGATCAGCACAATTACGAACTCttt                                                                                                                     >  2:687555/1‑151 (MQ=255)
                          gacCTCTGAAGTTATCCTGACGTTTTACAGGCTTTGTATTAAGAAACTATTAAGCCTGTGAGATATTATTTTTACAGGTGAGAGAGTCACTTCAGGGTAGAGAGATAATGAGAGCAGCCATATAAGAGATCAGCACAATTACGAACTCttt                                                                                                                     <  2:52823/151‑1 (MQ=255)
                            ccTCTGAAGTTATCCTGACGTTTTACAGGCTTTGTATTAAGAAACTATTAAGCCTGTGAGATATTATTTTTACAGGTGAGAGAGTCACTTCAGGGTAGAGAGATAATGAGAGCAGCCATATAAGAGATCAGCACAATTACGAACTCTtta                                                                                                                    <  1:318299/150‑1 (MQ=255)
                             ctctGAAGTTATCCTGACGTTTTACAGGCTTTGTATTAAGAAACTATTAAGCCTGTGAGATATTATTTTTACAGGTGAGAGAGTCACTTCAGGGTAGAGAGATAATGAGAGCAGCCATATAAGAGATCAGCACAATTACGAACTCTttatt                                                                                                                  >  2:1073304/1‑151 (MQ=255)
                                 gAAGTTATCCTGACGTTTTACAGGCTTTGTATTAAGAAACTATTAAGCCTGTGAGATATTATTTTTACAGGTGAGAGAGTCACTTCAGGGTAGAGAGATAATGAGAGCAGCCATATAAGAGATCAGCACAATTACGAACTCTTTATTaca                                                                                                               <  1:1203153/150‑1 (MQ=255)
                                   aGTTATCCTGACGTTTTACAGGCTTTGTATTAAGAAACTATTAAGCCTGTGAGATATTATTTTTACAGGTGAGAGAGTCACTTCAGGGTAGAGAGATAATGAGAGCAGCCATATAAGAGATCAGCACAATTACGAACTCTTTATTACACTg                                                                                                            <  2:593320/151‑1 (MQ=255)
                                       aTCCTGACGTTTTACAGGCTTTGTATTAAGAAACTATTAAGCCTGTGAGATATTATTTTTACAGGTGAGAGAGTCACTTCAGGGTAGAGAGATAATGAGAGCAGCCATATAAGAGATCAGCACAATTACGAACTCTTTATTACACTGACa                                                                                                         <  2:890833/150‑1 (MQ=255)
                                       aTCCTGACGTTTTACAGGCTTTGTATTAAGAAACTATTAAGCCTGTGAGATATTATTTTTACAGGTGAGAGAGTCACTTCAGGGTAGAGAGATAATGAGAGCAGCCATATAAGAGATCAGCACAATTACGAACTCTTTATTACACTGACa                                                                                                         <  2:418487/150‑1 (MQ=255)
                                       aTCCTGACGTTTTACAGGCTTTGTATTAAGAAACTATTAAGCCTGTGAGATATTATTTTTACAGGTGAGAGAGTCACTTCAGGGTAGAGAGATAATGAGAGCAGCCATATAAGAGATCAGCACAATTACGAACTCTTTATTACACTGACAg                                                                                                        <  1:223702/151‑1 (MQ=255)
                                         ccTGACGTTTTACAGGCTTTGTATTAAGAAACTATTAAGCCTGTGAGATATTATTTTTACAGGTGAGAGAGTCACTTCAGGGTAGAGAGATAATGAGAGCAGCCATATAAGAGATCAGCACAATTACGAACTCTTTATTACACTGACAgg                                                                                                       <  2:820213/150‑1 (MQ=255)
                                         ccTGACGTTTTACAGGCTTTGTATTAAGAAACTATTAAGCCTGTGAGATATTATTTTTACAGGTGAGAGAGTCACTTCAGGGTAGAGAGATAATGAGAGCAGCCATATAAGAGATCAGCACAATTACGAACTCTTTATTACACTGACAgg                                                                                                       <  2:28562/150‑1 (MQ=255)
                                         ccTGACGTTTTACAGGCTTTGTATTAAGAAACTATTAAGCCTGTGAGATATTATTTTTACAGGTGAGAGAGTCACTTCAGGGTAGAGAGATAATGAGAGCAGCCATATAAGAGATCAGCACAATTACGAACTCTTTATTACACTGACAgg                                                                                                       <  1:698044/150‑1 (MQ=255)
                                          cTGACGTTTTACAGGCTTTGTATTAAGAAACTATTAAGCCTGTGAGATATTATTTTTACAGGTGAGAGAGTCACTTCAGGGTAGAGAGATAATGAGAGCAGCCATATAAGAGATCAGCACAATTACGAACTCTTTATTACACTGACAGGAt                                                                                                     >  2:1280070/1‑151 (MQ=255)
                                            gACGTTTTACAGGCTTTGTATTAAGAAACTATTAAGCCTGTGAGATATTATTTTTACAGGTGAGAGAGTCACTTCAGGGTAGAGAGATAATGAGAGCAGCCATATAAGAGATCAGCACAATTACGAACTCTTTATTACACTGACAGGAttt                                                                                                   <  2:897372/151‑1 (MQ=255)
                                            gACGTTTTACAGGCTTTGTATTAAGAAACTATTAAGCCTGTGAGATATTATTTTTACAGGTGAGAGAGTCACTTCAGGGTAGAGAGATAATGAGAGCAGCCATATAAGAGATCAGCACAATTACGAACTCTTTATTACACTGACAGGAttt                                                                                                   >  2:1714296/1‑151 (MQ=255)
                                            gACGTTTTACAGGCTTTGTATTAAGAAACTATTAAGCCTGTGAGATATTATTTTTACAGGTGAGAGAGTCACTTCAGGGTAGAGAGATAATGAGAGCAGCCATATAAGAGATCAGCACAATTACGAACTCTTTATTACACTGACAGGAttt                                                                                                   <  2:1502200/151‑1 (MQ=255)
                                            gACGTTTTACAGGCTTTGTATTAAGAAACTATTAAGCCTGTGAGATATTATTTTTACAGGTGAGAGAGTCACTTCAGGGTAGAGAGATAATGAGAGCAGCCATATAAGAGATCAGCACAATTACGAACTCTTTATTACACTGACAGGAtt                                                                                                    <  2:101770/150‑1 (MQ=255)
                                             aCGTTTTACAGGCTTTGTATTAAGAAACTATTAAGCCTGTGAGATATTATTTTTACAGGTGAGAGAGTCACTTCAGGGTAGAGAGATAATGAGAGCAGCCATATAAGAGATCAGCACAATTACGAACTCTTTATTACACTGACAGGAtttt                                                                                                  >  1:803164/1‑151 (MQ=255)
                                                 tttACAGGCTTTGTATTAAGAAACTATTAAGCCTGTGAGATATTATTTTTACAGGTGAGAGAGTCACTTCAGGGTAGAGAGATAATGAGAGCAGCCATATAATAGATCAGCACAATTACGAACTCTTTATTACACTGACAGGATTTTACat                                                                                              >  2:141114/1‑151 (MQ=255)
                                                 tttACAGGCTTTGTATTAAGAAACTATTAAGCCTGTGAGATATTATTTTTACAGGTGAGAGAGTCACTTCAGGGTAGAGAGATAATGAGAGCAGCCATATAAGAGATCAGCACAATTACGAACTCTTTATTACACTGACAGGATTTTACa                                                                                               <  2:265973/150‑1 (MQ=255)
                                                    aCAGGCTTTGTATTAAGAAACTATTAAGCCTGTGAGATATTATTTTTACAGGTGAGAGAGTCACTTCAGGGTAGAGAGATAATGAGAGCAGCCATATAAGAGATCAGCACAATTACGAACTCTTTATTACACTGACAGGATTTTACatat                                                                                            <  2:507330/150‑1 (MQ=255)
                                                     cAGGCTTTGTATTAAGAAACTATTAAGCCTGTGAGATATTATTTTTACAGGTGAGAGAGTCACTTCAGGGTAGAGAGATAATGAGAGCAGCCATATAAGAGATCAGCACAATTACGAACTCTTTATTACACTGACAGGATTTTACATAttt                                                                                          <  1:771009/151‑1 (MQ=255)
                                                      aGGCTTTGTATTAAGAAACTATTAAGCCTGTGAGATATTATTTTTACAGGTGAGAGAGTCACTTCAGGGTAGAGAGATAATGAGAGCAGCCATATAAGAGATCAGCACAATTACGAACTCTTTATTACACTGACAGGATTTTACATAttt                                                                                          >  1:85019/1‑150 (MQ=255)
                                                        gCTTTGTATTAAGAAACTATTAAGCCTGTGAGATATTATTTTTACAGGTGAGAGAGTCACTTCAGGGTAGAGAGATAATGAGAGCAGCCATATAAGAGATCAGCACAATTACGAACTCTTTATTACACTGACAGGATTTTACATATTTAAc                                                                                       <  1:180215/151‑1 (MQ=255)
                                                         cTTTGTATTAAGAAACTATTAAGCCTGTGAGATATTATTTTTACAGGTGAGAGAGTCACTTCAGGGTAGAGAGATAATGAGAGCAGCCATATAAGAGATCAGCACAATTACGAACTCTTTATTACACTGACAGGATTTTACATATTTAAc                                                                                       >  2:325705/1‑150 (MQ=255)
                                                          tttGTATTAAGAAACTATTAAGCCTGTGAGATATTATTTTTACAGGTGAGAGAGTCACTTCAGGGTAGAGAGATAATGAGAGCAGCCATATAAGAGATCAGCACAATTACGAACTCTTTATTACACTGACAGGATTTTACATATTTAAc                                                                                       >  2:1284423/1‑149 (MQ=255)
                                                          tttGTATTAAGAAACTATTAAGCCTGTGAGATATTATTTTTACAGGTGAGAGAGTCACTTCAGGGTAGAGAGATAATGAGAGCAGCCATATAAGAGATCAGCACAATTACGAACTCTTTATTACACTGACAGGATTTTACATATTTAAc                                                                                       >  1:240575/1‑149 (MQ=255)
                                                           ttGTATTAAGAAACTATTAAGCCTGTGAGATATTATTTTTACAGGTGAGAGAGTCACTTCAGGGTAGAGAGATAATGAGAGCAGCCATATAAGAGATCAGCACAATTACGAACTCTTTATTACACTGACAGGATTTTACATATTTAACa                                                                                      <  2:1242738/149‑1 (MQ=255)
                                                           ttGTATTAAGAAACTATTAAGCCTGTGAGATATTATTTTTACAGGTGAGAGAGTCACTTCAGGGTAGAGAGATAATGAGAGCAGCCATATAAGAGATCAGCACAATTACGAACTCTTTATTACACTGACAGGATTTTACATATTTAACAg                                                                                     <  1:586492/150‑1 (MQ=255)
                                                            tGTATTAAGAAACTATTAAGCCTGTGAGATATTATTTTTACAGGTGAGAGAGTCACTTCAGGGTAGAGAGATAATGAGAGCAGCCATATAAGAGATCAGCACAATTACGAACTCTTTATTACACTGACAGGATTTTACATATTTAACAGa                                                                                    <  1:1479071/150‑1 (MQ=255)
                                                              tATTAAGAAACTATTAAGCCTGTGAGATATTATTTTTACAGGTGAGAGAGTCACTTCAGGGTAGAGAGATAATGAGAGCAGCCATATAAGAGATCAGCACAATTACGAACTCTTTATTACACTGACAGGATTTTACATATTTAACAGAtt                                                                                  >  2:532868/1‑150 (MQ=255)
                                                                  aaGAAACTATTAAGCCTGTGAGATATTATTTTTACAGGTGAGAGAGTCACTTCAGGGTAGAGAGATAATGAGAGCAGCCATATAAGAGATCAGCACAATTACGAACTCTTTATTACACTGACAGGATTTTACATATTTAACAGATTATCCt                                                                             >  1:957541/1‑151 (MQ=255)
                                                                       aCTATTAAGCCTGTGAGATATTATTTTTACAGGTGAGAGAGTCACTTCAGGGTAGAGAGATAATGAGAGCAGCCATATAAGAGATCAGCACAATTACGAACTCTTTATTACACTGACAGGATTTTACATATTTAACAGATTATCCTc                                                                            >  1:428404/1‑147 (MQ=255)
                                                                        cTATTAAGCCTGTGAGATATTATTTTTACAGGTGAGAGAGTCACTTCAGGGTAGAGAGATAATGAGAGCAGCCATATAAGAGATCAGCACAATTACGAACTCTTTATTACACTGACAGGATTTTACATATTTAACAGATTATCCTCAGAt                                                                        >  2:1345221/1‑150 (MQ=255)
                                                                         tATTAAGCCTGTGAGATATTATTTTTACAGGTGAGAGAGTCACTTCAGGGTAGAGAGATAATGAGAGCAGCCATATAAGAGATCAGCACAATTACGAACTCTTTATTACACTGACAGGATTTTACATACTTAACAGATTATCCTCAGATa                                                                       >  1:329535/1‑150 (MQ=255)
                                                                          aTTAAGCCTGTGAGATATTATTTTTACAGGTGAGAGAGTCACTTCAGGGTAGAGAGATAATGAGAGCAGCTATATAAGAGATCAGCACAATTACGAACTCTTTATTACACTGACAGGATTTTACATATTTAACAGATTATCCTCAGATaaa                                                                     <  2:1141272/151‑1 (MQ=255)
                                                                          aTTAAGCCTGTGAGATATTATTTTTACAGGTGAGAGAGTCACTTCAGGGTAGAGAGATAATGAGAGCAGCCATATAAGAGATCAGCACAATTACGAACTCTTTATTACACTGACAGGATTTTACATATTTAACAGATTATCCTCAGATaa                                                                      >  2:1302899/1‑150 (MQ=255)
                                                                          aTTAAGCCTGTGAGATATTATTTTTACAGGTGAGAGAGTCACTTCAGGGTAGAGAGATAATGAGAGCAGCCATATAAGAGATCAGCACAATTACGAACTCTTTATTACACTGACAGGATTTTACATATTTAACAGATTATCCTCAGATa                                                                       <  2:1187034/149‑1 (MQ=255)
                                                                            tAAGCCTGTGAGATATTATTTTTACAGGTGAGAGAGTCACTTCAGGGTAGAGAGATAATGAGAGCAGCCATATAAGAGATCAGCACAATTACGAACTCTTTATTACACTGACAGGATTTTACATATTTAACAGATTATCCTCAGATaaaa                                                                    <  1:1236766/150‑1 (MQ=255)
                                                                              aGCCTGTGAGATATTATTTTTACAGGTGAGAGAGTCACTTCAGGGTAGAGAGATAATGAGAGCAGCCATATAAGAGATCAGCACAATTACGAACTCTTTATTACACTGACAGGATTTTACATATTTAACAGATTATCCTCAGATAAAAggg                                                                 >  2:565441/1‑151 (MQ=255)
                                                                                ccTGTGAGATATTATTTTTACAGGTGAGAGAGTCACTTCAGGGTAGAGAGATAATGAGAGCAGCCATATAAGAGATCAGCACAATTACGAACTCTTTATTACACTGACAGGATTTTACATATTTAACAGATTATCCTCAGATAAAAGGGCt                                                               <  1:252037/151‑1 (MQ=255)
                                                                                ccTGTGAGATATTATTTTTACAGGTGAGAGAGTCACTTCAGGGTAGAGAGATAATGAGAGCAGCCATATAAGAGATCAGCACAATTACGAACTCTTTATTACACTGACAGGATTTTACATATTTAACAGATTATCCTCAGATAAAAGGGCt                                                               >  1:744530/1‑151 (MQ=255)
                                                                                 cTGTGAGATATTATTTTTACAGGTGAGAGAGTCACTTCAGGGTAGAGAGATAATGAGAGCAGCCATATAAGAGATCAGCACAATTACGAACTCTTTATTACACTGACAGGATTTTACATATTTAACAGATTATCCTCAGATAAAAGGGCTg                                                              >  1:814079/1‑151 (MQ=255)
                                                                                     gagaTATTATTTTTACAGGTGAGAGAGTCACTTCAGGGTAGAGAGATAATGAGAGCAGCCATATAAGAGATCAGCACAATTACGAACTCTTTATTACACTGACAGGATTTTACATATTTAACAGATTATCCTCAGATAAAAGGGCTGGaa                                                           <  1:689034/150‑1 (MQ=255)
                                                                                     gagaTATTATTTTTACAGGTGAGAGAGTCACTTCAGGGTAGAGAGATAATGAGAGCAGCCATATAAGAGATCAGCACAATTACGAACTCTTTATTACACTGACAGGATTTTACATATTTAACAGATTATCCTCAGATAAAAGGGCTGGaa                                                           <  1:1398575/150‑1 (MQ=255)
                                                                                      agaTATTATTTTTACAGGTGAGAGAGTCACTTCAGGGTAGAGAGATAATGAGAGCAGCCATATAAGAGATCAGCACAATTACGAACTCTTTATTACACTGACAGGATTTTACATATTTAACAGATTATCCTCAGATAAAAGGGCTGGAATa                                                         <  1:1339192/151‑1 (MQ=255)
                                                                                         tattatTTTTACAGGTGAGAGAGTCACTTCAGGGTAGAGAGATAATGAGAGCAGCCATATAAGAGATCAGCACAATTACGAACTCTTTATTACACTGACAGGATTTTACATATTTAACAGATTATCCTCAGATAAAAGGGCTGGAATAcc                                                       >  2:409507/1‑150 (MQ=255)
                                                                                           ttattTTTACAGGTGAGAGAGTCACTTCAGGGTAGAGAGATAATGAGAGCAGCCATATAAGAGATCAGCACAATTACGAACTCTTTATTACACTGACAGGATTTTACATATTTAACAGATTATCCTCAGATAAAAGGGCTGGAATACCAGc                                                    >  2:963450/1‑151 (MQ=255)
                                                                                             attTTTACAGGTGAGAGAGTCACTTCAGGGTAGAGAGATAATGAGAGCAGCCATATAAGAGATCAGCACAATTACGAACTCTTTATTACACTGACAGGATTTTACATATTTAACAGATTATCCTCAGATAAAAGGGCTGGAATACCAGccc                                                  >  2:1670196/1‑151 (MQ=255)
                                                                                             attTTTACAGGTGAGAGAGTCACTTCAGGGTAGAGAGATAATGAGAGCAGCCATATAAGAGATCAGCACAATTACGAACTCTTTATTACACTGACAGGATTTTACATATTTAACAGATTATCCTCAGATAAAAGGGCTGGAATACCAGccc                                                  >  2:148438/1‑151 (MQ=255)
                                                                                             attTTTACAGGTGAGAGAGTCACTTCAGGGTAGAGAGATAATGAGAGCAGCCATATAAGAGATCAGCACAATTACGAACTCTTTATTACACTGACAGGATTTTACATATTTAACAGATTATCCTCAGATAAAAGGGCTGGAATACCAGcc                                                   <  1:1279975/150‑1 (MQ=255)
                                                                                                tttACAGGTGAGAGAGTCACTTCAGGGTAGAGAGATAATGAGAGCAGCCATATAAGAGATCAGCACAATTACGAACTCTTTATTACACTGACAGGATTTTACATATTTAACAGATTATCCTCAGATAAAAGGGCTGGAATACCAGCCCtt                                                <  1:656444/150‑1 (MQ=255)
                                                                                                 ttACAGGTGAGAGAGTCACTTCAGGGTAGAGAGATAATGAGAGCAGCCATATAAGAGATCAGCACAATTACGAACTCTTTATTACACTGACAGGATTTTACATATTTAACAGATTATCCTCAGATAAAAGGGCTGGAATACCAGCCCTTGt                                              >  1:542974/1‑151 (MQ=255)
                                                                                                 ttACAGGTGAGAGAGTCACTTCAGGGTAGAGAGATAATGAGAGCAGCCATATAAGAGATCAGCACAATTACGAACTCTTTATTACACTGACAGGATTTTACATATTTAACAGATTATCCTCAGATAAAAGGGCTGGAATACCAGCCCTTGt                                              >  2:506549/1‑151 (MQ=255)
                                                                                                 ttACAGGTGAGAGAGTCACTTCAGGGTAGAGAGATAATGAGAGCAGCCATATAAGAGATCAGCACAATTACGAACTCTTTATTACACTGACAGGATTTTACATATTTAACAGATTATCCTCAGATAAAAGGGCTGGAATACCAGCCCTTGt                                              >  1:1309276/1‑151 (MQ=255)
                                                                                                 ttACAGGTGAGAGAGTCACTTCAGGGTAGAGAGATAATGAGAGCAGCCATATAAGAGATCAGCACAATTACGAACCCTTTATTACACTGACAGGATTTTACATATTTAACAGATTATCCTCAGATAAAAGGGCTGGAATACCAGCCCTTg                                               <  2:1352906/150‑1 (MQ=255)
                                                                                                   aCAGGTGAGAGAGTCACTTCAGGGTAGAGAGATAATGAGAGCAGCCATATAAGAGATCAGCACAATTACGAACTCTTTATTACACTGACAGGATTTTACATATTTAACAGATTATCCTCAGATAAAAGGGCTGGAATACCAGCCCTTGtt                                             <  1:1502168/150‑1 (MQ=255)
                                                                                                   aCAGGTGAGAGAGTCACTTCAGGGTAGAGAGATAATGAGAGCAGCCATATAAGAGATCAGCACAATTACGAACTCTTTATTACACTGACAGGATTTTACATATTTAACAGATTATCCTCAGATAAAAGGGCTGGAATACCAGCCCTTGTTc                                            >  1:1117944/1‑151 (MQ=255)
                                                                                                      ggTGAGAGAGTCACTTCAGGGTAGAGAGATAATGAGAGCAGCCATATAAGAGATCAGCACAATTACGAACTCTTTATTACACTGACAGGATTTTACATATTTAACAGATTATCCTCAGATAAAAGGGCTGGAATACCAGCCCTTGTTCgtg                                         >  2:1592514/1‑151 (MQ=255)
                                                                                                      ggTGAGAGAGTCACTTCAGGGTAGAGAGATAATGAGAGCAGCCATATAAGAGATCAGCACAATTACGAACTCTTTATTACACTGACAGGATTTTACATATTTAACAGATTATCCTCAGATAAAAGGGCTGGAATACCAGCCCTTGTTCgtg                                         >  1:490065/1‑151 (MQ=255)
                                                                                                         gagagaGTCACTTCAGGGTAGAGAGATAATGAGAGCAGCCATATAAGAGATCAGCACAATTACGAACTCTTTATTACACTGACAGGATTTTACATATTTAACAGATTATCCTCAGATAAAAGGGCTGGAATACCAGCCCTTGTTCGTGtt                                       <  2:225145/150‑1 (MQ=255)
                                                                                                         gagagaGTCACTTCAGGGTAGAGAGATAATGAGAGCAGCCATATAAGAGATCAGCACAATTACGAACTCTTTATTACACTGACAGGATTTTACATATTTAACAGATTATCCTCAGATAAAAGGGCTGGAATACCAGCCCTTGTTCGTGtt                                       <  2:1206132/150‑1 (MQ=255)
                                                                                                         gagagaGTCACTTCAGGGTAGAGAGATAATGAGAGCAGCCATATAAGAGATCAGCACAATTACGAACTCTTTATTACACTGACAGGATTTTACATATTTAACAGATTATCCTCAGATAAAAGGGCTGGAATACCAGCCCTTGTTCGTGTTa                                      <  1:828274/151‑1 (MQ=255)
                                                                                                             gagTCACTTCAGGGTAGAGAGATAATGAGAGCAGCCATATAAGAGATCAGCACAATTACGAACTCTTTATTACACTGACAGGATTTTACATATTTAACAGATTATCCTCAGATAAAAGGGCTGGAATACCAGCCCTTGTTCGTGTTAATcc                                  >  1:944159/1‑151 (MQ=255)
                                                                                                               gTCACTTCAGGGTAGAGAGATAATGAGAGCAGCCATATAAGAGATCAGCACAATTACGAACTCTTTATTACACTGACAGGATTTTACATATTTAACAGATTATCCTCAGATAAAAGGGCTGGAATACCAGCCCTTGTTCGTGTTAATCCCa                                <  1:1359928/151‑1 (MQ=255)
                                                                                                               gTCACTTCAGGGTAGAGAGATAATGAGAGCAGCCATATAAGAGATCAGCACAATTACGAACTCTTTATTACACTGACAGGATTTTACATATTTAACAGATTATCCTCAGATAAAAGGGCTGGAATACCAGCCCTTGTTCGTGTTAATCCCa                                <  1:752943/151‑1 (MQ=255)
                                                                                                                  aCTTCAGGGTAGAGAGATAATGAGAGCAGCCATATAAGAGATCAGCACAATTACGAACTCTTTATTACACTGACAGGATTTTACATATTTAACAGATTATCCTCAGATAAAAGGGCTGGAATACCAGCCCTTGTTCGTGTTAATCCCAGCt                             >  2:1629378/1‑151 (MQ=255)
                                                                                                                      cAGGGTAGAGAGATAATGAGAGCAGCCATATAAGAGATCAGCACAATTACGAACTCTTTATTACACTGACAGGATTTTACATATTTAACAGATTATCCTCAGATAAAAGGGCTGGAATACCAGCCCTTGTTCGTGTTAATCCCAGCTCAg                          <  1:687496/150‑1 (MQ=255)
                                                                                                                       aGGGTAGAGAGATAATGAGAGCAGCCATATAAGAGATCAGCACAATTACGAACTCTTTATTACACTGACAGGATTTTACATATTTAACAGATTATCCTCAGATAAAAGGGCTGGAATACCAGCCCTTGTTCGTGTTAATCCCAGCTCAGa                         >  1:1524180/1‑150 (MQ=255)
                                                                                                                              agagaTAATGAGAGCAGCCATATAAGAGATCAGCACAATTACGAACTCTTTATTACACTGACAGGATTTTACATATTTAACAGATTATCCTCAGATAAAAGGGCTGGAATACCAGCCCTTGTTCGTGTTAATCCCAGCTCAGAATAACttt                 <  1:284639/151‑1 (MQ=255)
                                                                                                                                agaTAATGAGAGCAGCCATATAAGAGATCAGCACAATTACGAACTCTTTATTACACTGACAGGATTTTACATATTTAACAGATTATCCTCAGATAAAAGGGCTGGAATACCAGCCCTTGTTCGTGTTAATCCCAGCTCAGAATAACTTTcc               >  2:1385483/1‑151 (MQ=255)
                                                                                                                                    aaTGAGAGCAGCCATATAAGAGATCAGCACAATTACGAACTCTTTATTACACTGACAGGATTTTACATATTTAACAGATTATCCTCAGATAAAAGGGCTGGAATACCAGCCCTTGTTCGTGTTAATCCCAGCTCAGAATAACTTTCCCgg            <  2:1124790/150‑1 (MQ=255)
                                                                                                                                    aaTGAGAGCAGCCATATAAGAGATCAGCACAATTACGAACTCTTTATTACACTGACAGGATTTTACATATTTAACAGATTATCCTCAGATAAAAGGGCTGGAATACCAGCCCTTGTTCGTGTTAATCCCAGCTCAGAATAACTTTCCCgg            <  2:814144/150‑1 (MQ=255)
                                                                                                                                    aaTGAGAGCAGCCATATAAGAGATCAGCACAATTACGAACTCTTTATTACACTGACAGGATTTTACATATTTAACAGATTATCCTCAGATAAAAGGGCTGGAATACCAGCCCTTGTTCGTGTTAATCCCAGCTCAGAATAACTTTCCCGGa           <  2:1348726/151‑1 (MQ=255)
                                                                                                                                     aTGAGAGCAGCCATATAAGAGATCAGCACAATTACGAACTCTTTATTACACTGACAGGATTTTACATATTTAACAGATTATCCTCAGATAAAAGGGCTGGAATACCAGCCCTTGTTCGTGTTAATCCCAGCTCAGAATAACTTTCCCGGAc          <  2:415591/151‑1 (MQ=255)
                                                                                                                                     aTGAGAGCAGCCATATAAGAGATCAGCACAATTACGAACTCTTTATTACACTGACAGGATTTTACATATTTAACAGATTATCCTCAGATAAAAGGGCTGGAATACCAGCCCTTGTTCGTGTTAATCCCAGCTCAGAATAACTTTCCCGGAc          <  2:966441/151‑1 (MQ=255)
                                                                                                                                      tGAGAGCAGCCATATAAGAGATCAGCACAATTACGAACTCTTTATTACACTGACAGGATTTTACATATTTAACAGATTATCCTCAGATAAAAGGGCTGGAATACCAGCCCTTGTTCGTGTTAATCCCAGCTCAGAATAACTTTCCCGGACt         >  1:1111078/1‑151 (MQ=255)
                                                                                                                                       gagaGCAGCCATATAAGAGATCAGCACAATTACGAACTCTTTATTACACTGACAGGATTTTACATATTTAACAGATTATCCTCAGATAAAAGGGCTGGAATACCAGCCCTTGTTCGTGTTAATCCCAGCTCAGAATAACTTTCCCGGACt         <  1:1572806/150‑1 (MQ=255)
                                                                                                                                         gagCAGCCATATAAGAGATCAGCACAATTACGAACTCTTTATTACACTGACAGGATTTTACATATTTAACAGATTATCCTCAGATAAAAGGGCTGGAATACCAGCCCTTGTTCGTGTTAATCCCAGCTCAGAATAACTTTCCCGGACTGGc      >  1:495477/1‑151 (MQ=255)
                                                                                                                                         gagCAGCCATATAAGAGATCAGCACAATTACGAACTCTTTATTACACTGACAGGATTTTACATATTTAACAGATTATCCTCAGATAAAAGGGCTGGAATACCAGCCCTTGTTCGTGTTAATCCCAGCTCAGAATAACTTTCCCGGACTGGc      <  2:672052/151‑1 (MQ=255)
                                                                                                                                          agcagcCATATAAGAGATCAGCACAATTACGAACTCTTTATTACACTGACAGGATTTTACATATTTAACAGATTATCCTCAGATAAAAGGGCTGGAATACCAGCCCTTGTTCGTGTTAATCCCAGCTCAGAATAACTTTCCCGGACTGGcc     >  1:587701/1‑151 (MQ=255)
                                                                                                                                           gcagcCATATAAGAGATCAGCACAATTACGAACTCTTTATTACACTGACAGGATTTTACATATTTAACAGATTATCCTCAGATAAAAGGGCTGGAATACCAGCCCTTGTTCGTGTTAATCCCAGCTCAGAATAACTTTCCCGGACTGGccc    >  2:1423151/1‑151 (MQ=255)
                                                                                                                                            cagcCATATAAGAGATCAGCACAATTACGAACTCTTTATTACACTGACAGGATTTTACATATTTAACAGATTATCCTCAGATAAAAGGGCTGGAATACCAGCCCTTGTTCGTGTTAATCCCAGCTCAGAATAACTTTCCCGGACTGGCCCg   <  1:39093/151‑1 (MQ=255)
                                                                                                                                             agcCATATAAGAGATCAGCACAATTACGAACTCTTTATTACACTGACAGGATTTTACATATTTAACAGATTATCCTCAGATAAAAGGGCTGGAATACCAGCCCTTGTTCGTGTTAATCCCAGCTCAGAATAACTTTCCCGGACTGGCCCg   >  1:695805/1‑150 (MQ=255)
                                                                                                                                                |                                                                                                                                                   
GGTGCTGTTCATCATAAATTACCGACGACCTCTGAAGTTATCCTGACGTTTTACAGGCTTTGTATTAAGAAACTATTAAGCCTGTGAGATATTATTTTTACAGGTGAGAGAGTCACTTCAGGGTAGAGAGATAATGAGAGCAGCTATATAAGAGATCAGCACAATTACGAACTCTTTATTACACTGACAGGATTTTACATATTTAACAGATTATCCTCAGATAAAAGGGCTGGAATACCAGCCCTTGTTCGTGTTAATCCCAGCTCAGAATAACTTTCCCGGACTGGCCCGA  >  NC_000913/3790067‑3790358

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A