Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A8 F50 I3 R1
|
168 |
141.0 |
4346284 |
99.6% |
4328898 |
150.4 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,816,407 |
G→A |
pseudogene (143/669 nt) |
rph ← |
ribonuclease PH (defective);enzyme; Degradation of RNA; RNase PH |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,816,407 | 0 | G | A | 99.2%
| 496.0
/ ‑4.2
| 122 | pseudogene (143/669 nt) | rph | ribonuclease PH (defective);enzyme; Degradation of RNA; RNase PH |
| Reads supporting (aligned to +/- strand): ref base G (0/1); new base A (50/70); total (51/71) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.38e-01 |
Only 100 of 123 total aligned reads displayed.
AGCACGGGCGATCAGACGCTGGATTTCCATTGTGCGTCCACCCTGCTTACCTTTCGCCGCTTCACGAGCGTTACGGGTGTGGGTAGAACGTGGCAGCATGCCGTACTCTGCGGTGATCCAGCCCTGGCCCTGACCTTTCAGGAAGCGCGGCACGCCTTCTTCAATAGAGGC‑GGTACACAACACTTTGGTATCGCCAAATTCGACCAGCACCGAGCCTTCTGCATGTTTTGTATAGTTACGAGTCAGGGTAACGGGACGCACCTGATTATTGCTACGGCCTGCTGGACGCATATTG > NC_000913/3816259‑3816553
|
gggCGATCAGACGCTGGATTTCCATTGTGCGTCCACCCTGCTTACCTTTCGCCGCTTCACGAGCGTTACGGGTGTGGGTAGAACGTGGCAGCATGCCGTACTCTGCGGTGATCCAGCCCTGGCCCTGACCTTTCAGGAAGCGCAGCACGcc < 1:652355/151‑1 (MQ=255)
cGATCAGACGCTGGATTTCCATTGTGCGTCCACCCTGCTTACCTTTCGCCGCTTCACGAGCGTTACGGGTGTGGGTAGAACGTGGCAGCATGCCGTACTCTGCGGTGATCCAGCCCTGGCCCTGACCTTTCAGGAAGCGCAGCACGCcttc < 1:1139898/151‑1 (MQ=255)
cGATCAGACGCTGGATTTCCATTGTGCGTCCACCCTGCTTACCTTTCGCCGCTTCACGAGCGTTACGGGTGTGGGTAGAACGTGGCAGCATGCCGTACTCTGCGGTGATCCAGCCCTGGCCCTGACCTTTCAGGAAGCGCAGCACGCcttc < 2:1412788/151‑1 (MQ=255)
gATCAGACGCTGGATTTCCATTGTGCGTCCACCCTGCTTACCTTTCGCCGCTTCACGAGCGTTACGGGTGTGGGTAGAACGTGGCAGCATGCCGTACTCTGCGGTGATCCAGCCCTGGCCCTGACCTTTCAGGAAGCGCAGCACGCcttct < 1:790698/151‑1 (MQ=255)
gATCAGACGCTGGATTTCCATTGTGCGTCCACCCTGCTTACCTTTCGCCGCTTCACGAGCGTTACGGGTGTGGGTAGAACGTGGCAGCATGCCGTACTCTGCGGTGATCCAGCCCTGGCCCTGACCTTTCAGGAAGCGCAGCACGCcttct < 2:2103779/151‑1 (MQ=255)
aTCAGACGCTGGATTTCCATTGTGCGTCCACCCTGCTTACCTTTCGCCGCTTCACGAGCGTTACGGGTGTGGGTAGAACGTGGCAGCATGCCGTACTCTGCGGTGATCCAGCCCTGGCCCTGACCTTTCAGGAAGCGCATCACGCcttctt < 1:1363337/151‑1 (MQ=255)
tCAGACGCTGGATTTCCATTGTGCGTCCACCCTGCTTACCTTTCGCCGCTTCACGAGCGTTACGGGTGTGGGTAGAACGTGGCAGCATGCCGTACTCTGCGGTGATCCAGCCCTGGCCCTGACCTTTCAGGAAGCGCAGCACGCCttcttc > 1:2012444/1‑151 (MQ=255)
tCAGACGCTGGATTTCCATTGTGCGTCCACCCTGCTTACCTTTCGCCGCTTCACGAGCGTTACGGGTGTGGGTAGAACGTGGCAGCATGCCGTACTCTGCGGTGATCCAGCCCTGGCCCTGACCTTTCAGGAAGCGCAGCACGCCttcttc > 1:825890/1‑151 (MQ=255)
aGACGCTGGATTTCCATTGTGCGTCCACCCTGCTTACCTTTCGCCGCTTCACGAGCGTTACGGGTGTGGGTAGAACGTGGCAGCATGCCGTACTCTGCGGTGATCCAGCCCTGGCCCTGACCTTTCAGGAAGCGCAGCACGCCTTCTTCaa < 1:379787/151‑1 (MQ=255)
aGACGCTGGATTTCCATTGTGCGTCCACCCTGCTTACCTTTCGCCGCTTCACGAGCGTTACGGGTGTGGGTAGAACGTGGCAGCATGCCGTACTCTGCGGTGATCCAGCCCTGGCCCTGACCTTTCAGGAAGCGCAGCACGCCTTCTTCa > 1:1937692/1‑150 (MQ=255)
aGACGCTGGATTTCCATTGTGCGTCCACCCTGCTTACCTTTCGCCGCTTCACGAGCGTTACGGGTGTGGGTAGAACGTGGCAGAATGCCGTACTCTGCGGTGATCCAGCCCTGGCCCTGACCTTTCAGGAAGCGCAGCACGCCTTCTTCa > 2:1798504/1‑150 (MQ=255)
cGCTGGATTTCCATTGTGCGTCCACCCTGCTTACCTTTCGCCGCTTCACGAGCGTTACGGGTGTGGGTAGAACGTGGCAGCATGCCGTACTCTGCGGTGATCCAGCCCTGGCCCTGACCTTTCAGGAAGCGCAGCACGCCTTCTTCAATag < 2:1133251/151‑1 (MQ=255)
cTGGATTTCCATTGTGCGTCCACCCTGCTTACCTTTCGCCGCTTCACGAGCGTTACGGGTGTGGGTAGAACGTGGCAGCATGCCGTACTCTGCGGTGATCCAGCCCTGGCCCTGACCTTTCAGGAAGCGCAGCACGCCTTCTTCAATaga < 2:1664929/150‑1 (MQ=255)
cTGGATTTCCATTGTGCGTCCACCCTGCTTACCTTTCGCCGCTTCACGAGCGTTACGGGTGTGGGTAGAACGTGGCAGCATGCCGTACTCTGCGGTGATCCAGCCCTGGCCCTGACCTTTCAGGAAGCGCAGCACGCCTTCTTCAATag > 2:1757304/1‑149 (MQ=255)
ggATTTCCATTGTGCGTCCACCCTGCTTACCTTTCGCCGCTTCACGAGCGTTACGGGTGTGGGTAGAACGTGGCAGCATGCCGTACTCTGCGGTGATCCAGCCCTGGCCCTGACCTTTCAGGAAGCGCAGCACGCCTTCTTCAATagag < 1:722527/149‑1 (MQ=255)
ggATTTCCATTGTGCGTCCACCCTGCTTACCTTTCGCCGCTTCACGAGCGTTACGGGTGTGGGTAGAACGTGGCAGCATGCCGTACTCTGCGGTGATCCAGCCCTGGCCCTGACCTTTCAGGAAGCGCAGCACGCCTTCTTCAATAGAgg < 2:875279/150‑1 (MQ=255)
ggATTTCCATTGTGCGTCCACCCTGCTTACCTTTCGCCGCTTCACGAGCGTTACGGGTGTGGGTAGAACGTGGCAGCATGCCGTACTCTGCGGTGATCCAGCCCTGGCCCTGACCTTTCAGGAAGCGCAGCACGCCTTCTTCAATAGAGGc < 1:1616749/151‑1 (MQ=255)
ggATTTCCATTGTGCGTCCACCCTGCTTACCTTTCGCCGCTTCACGAGCGTTACGGGTGTGGGTAGAACGTGGCAGCATGCCGTACTCTGCGGTGATCCAGCCCTGGCCCTGACCTTTCAGGAAGCGCAGCACGCCTTCTTCAATAGAGGc < 2:937095/151‑1 (MQ=255)
aTTTCCATTGTGCGTCCACCCTGCTTACCTTTCGCCGCTTCACGAGCGTTACGGGTGTGGGTAGAACGTGGCAGCATGCCGTACTCTGCGGTGATCCAGCCCTGGCCCTGACCTTTCAGGAAGCGCAGCACGCCTTCTTCAATAGAGGC‑gg < 1:1552479/151‑1 (MQ=255)
ttCCATTGTGCGTCCACCCTGCTTACCTTTCGCCGCTTCACGAGCGTTACGGGTGTGGGTAGAACGTGGCAGCATGCCGTACTCTGCGGTGATCCAGCCCTGGCCCTGACCTTTCAGGAAGCGCAGCACGCCTTCTTCAATAGAGGC‑GGt > 1:681021/1‑150 (MQ=255)
ttCCATTGTGCGTCCACCCTGCTTACCTTTCGCCGCTTCACGAGCGTTACGGGTGTGGGTAGAACGTGGCAGAATGCCGTACTCTGCGGTGATCCAGCCCTGGCCCTGACCTTTCAGGAAGCGCAGCACGCCTTCTTCAATAGAGGC‑GGt < 1:1798538/150‑1 (MQ=255)
ccATTGTGCGTCCACCCTGCTTACCTTTCGCCGCTTCACGAGCGTTACGGGTGTGGGTAGAACGTGGCAGCATGCCGTACTCTGCGGTGATCCAGCCCTGGCCCTGACCTTTCAGGAAGCGCAGCACGCCTTCTTCAATAGAGGC‑GGTaca < 1:1357275/151‑1 (MQ=255)
cATTGTGCGTCCACCCTGCTTACCTTTCGCCGCTTCACGAGCGTTACGGGTGTGGGTAGAACGTGGCAGCATGCCGTACTCTGCGGTGATCCAGCCCTGGCCCTGACCTTTCAGGAAGCGCAGCACGCCTTCTTCAATAGAGGC‑GGTacac > 1:195087/1‑151 (MQ=255)
gtgCGTCCACCCTGCTTACCTTTCGCCGCTTCACGAGCGTTACGGGTGTGGGTAGAACGTGGCAGCATGCCGTACTCTGCGGTGATCCAGCCCTGGCCCTGACCTTTCAGGAAGCGCAGCACGCCTTCTTCAATAGAGGC‑GGTACacaaca < 1:794498/151‑1 (MQ=255)
gCGTCCACCCTGCTTACCTTTCGCCGCTTCACGAGCGTTACGGGTGTGGGTAGAACGTGGCAGCATGCCGTACTCTGCGGTGATCCAGCCCTGGCCCTGACCTTTCAGGAAGCGCAGCACGCCTTCTTCAATAGAGGC‑GGTACACAacac < 1:1301232/150‑1 (MQ=255)
gCGTCCACCCTGCTTACCTTTCGCCGCTTCACGAGCGTTACGGGTGTGGGTAGAACGTGGCAGCATGCCGTACTCTGCGGTGATCCAGCCCTGGCCCTGACCTTTCAGGAAGCGCAGCACGCCTTCTTCAATAGAGGC‑GGTACACAACACt < 2:1012550/151‑1 (MQ=255)
tCCACCCTGCTTACCTTTCGCCGCTTCACGAGCGTTACGGGTGTGGGTAGAACGTGGCAGCATGCCGTACTCTGCGGTGATCCAGCCCTGGCCCTGACCTTTCAGGAAGCGCAGCACGCCTTCTTCAATAGAGGC‑GGTACACAACACttt > 1:332451/1‑150 (MQ=255)
ccACCCTGCTTACCTTTCGCCGCTTCACGAGCGTTACGGGTGTGGGTAGAACGTGGCAGCATGCCGTACTCTGCGGTGATCCAGCCCTGGCCCTGACCTTTCAGGAAGCGCAGCACGCCTTCTTCAATAGAGGC‑GGTACACAACACTTTgg < 1:1010897/151‑1 (MQ=255)
ccACCCTGCTTACCTTTCGCCGCTTCACGAGCGTTACGGGTGTGGGTAGAACGTGGCAGCATGCCGTACTCTGCGGTGATCCAGCCCTGGCCCTGACCTTTCAGGAAGCGCAGCACGCCTTCTTCAATAGAGGC‑GGTACACAACACTTTg < 1:457477/150‑1 (MQ=255)
cACCCTGCTTACCTTTCGCCGCTTCACGAGCGTTACGGGTGTGGGTAGAACGTGGCAGCATGCCGTACTCTGCGGTGATCCAGCCCTGGCCCTGACCTTTCAGGAAGCGCAGCACGCCTTCTTCAATAGAGGC‑GGTACACAACACttt > 1:949277/1‑148 (MQ=255)
aCCCTGCTTACCTTTCGCCGCTTCACGAGCGTTACGGGTGTGGGTAGAACGTGGCAGCATGCCGTACTCTGCGGTGATCCAGCCCTGGCCCTGACCTTTCAGGAAGCGCAGCACGCCTTCTTCAATAGAGGC‑GGTACACAACACTTTgg > 2:173071/1‑149 (MQ=255)
cccTGCTTACCTTTCGCCGCTTCACGAGCGTTACGGGTGTGGGTAGAACGTGGCAGCATGCCGTACTCTGCGGTGATCCAGCCCTGGCCCTGACCTTTCAGGAAGCGCAGCACGCCTTCTTCAATAGAGGC‑GGTACACAACACTTTGGTAt < 2:1452292/151‑1 (MQ=255)
ccTGCTTACCTTTCGCCGCTTCACGAGCGTTACGGGTGTGGGTAGAACGTGGCAGCATGCCGTACTCTGCGGTGATCCAGCCCTGGCCCTGACCTTTCAGGAAGCGCAGCACGCCTTCTTCAATAGAGGC‑GGTACACAACACTTTGGTAt < 1:173801/150‑1 (MQ=255)
tGCTTACCTTTCGCCGCTTCACGAGCGTTACGGGTGTGGGTAGAACGTGGCAGCATGCCGTACTCTGCGGTGATCCAGCCCTGGCCCTGACCTTTCAGGAAGCGCAGCACGCCTTCTTCAATAGAGGC‑GGTACACAACACTTTGGTATCGc > 2:1905768/1‑151 (MQ=255)
ttACCTTTCGCCGCTTCACGAGCGTTACGGGTGTGGGTAGAACGTGGCAGCATGCCGTACTCTGCGGTGATCCAGCCCTGGCCCTGACCTTTCAGGAAGCGCAGCACGCCTTCTTCAATAGAGGC‑GGTACACAACACTTTGGTATCGCCa > 1:1765692/1‑150 (MQ=255)
tACCTTTCGCCGCTTCACGAGCGTTACGGGTGTGGGTAGAACGTGGCAGCATGCCGTACTCTGCGGTGATCCAGCCCTGGCCCTGACCTTTCAGGAAGCGCAGCACGCCTTCTTCAATAGAGGC‑GGTACACAACACTTTGGTATCGCCa < 2:673650/149‑1 (MQ=255)
tACCTTTCGCCGCTTCACGAGCGTTACGGGTGTGGGTAGAACGTGGCAGCATGCCGTACTCTGCGGTGATCCAGCCCTGGCCCTGACCTTTCAGGAAGCGCAGCACGCCTTCTTCAATAGAGGC‑GGTACACAACACTTTGGTATCGCCa < 2:1485801/149‑1 (MQ=255)
aCCTTTCGCCGCTTCACGAGCGTTACGGGTGTGGGTAGAACGTGGCAGCATGCCGTACTCTGCGGTGATCCAGCCCTGGCCCTGACCTTTCAGGAAGCGCAGCACGCCTTCTTCAATAGAGGC‑GGTACACAACACTTTGGTATCGCCaaa < 2:121992/150‑1 (MQ=255)
ccTTTCGCCGCTTCACGAGCGTTACGGGTGTGGGTAGAACGTGGCAGCATGCCGTACTCTGCGGTGATCCAG‑CCTTGCCCTGAACTTTTCGGAAGCGCCGCCCGCCTTTTTCAATAAAAGCGGGTAACCAAACCTTTGGATTCGCCAAAt > 2:1974337/1‑150 (MQ=255)
tttCGCCGCTTCACGAGCGTTACGGGTGTGGGTAGAACGTGGCAGCATGCCGTACTCTGCGGTGATCCAGCCCTGGCCCTGACCTTTCAGGAAGCGCAGCACGCCTTCTTCAATAGAGGC‑GGTACACAACACTTTGGTATCGCCAAATTc > 2:1252460/1‑150 (MQ=255)
tttCGCCGCTTCACGAGCGTTACGGGTGTGGGTAGAACGTGGCAGCATGCCGTACTCTGCGGTGATCCAGCCCTGGCCCTGACCTTTCAGGAAGCGCAGCACGCCTTCTTCAATAGAGGC‑GGTACACAACACTTTGGTATCGCCAAATTCg > 2:689167/1‑151 (MQ=255)
tttCGCCGCTTCACGAGCGTTACGGGTGTGGGTAGAACGTGGCAGCATGCCGTACTCTGCGGTGATCCAGCCCTGGCCCTGACCTTTCAGGAAGCGCAGCACGCCTTCTTCAATAGAGGC‑GGTACACAACACTTTGGTATCGCCAAATTCg > 2:1613795/1‑151 (MQ=255)
ttCGCCGCTTCACGAGCGTTACGGGTGTGGGTAGAACGTGGCAGCATGCCGTACTCTGCGGTGATCCAGCCCTGGCCCTGACCTTTCAGGAAGCGCAGCACGCCTTCTTCAATAGAGGC‑GGTACACAACACTTTGGTATCGCCAAATTCg > 1:1781899/1‑150 (MQ=255)
gccgcTTCACGAGCGTTACGGGTGTGGGTAGAACGTGGCAGCATGCCGTACTCTGCGGTGATCCAGCCCTGGCCCTGACCTTTCAGGAAGCGCAGCACGCCTTCTTCAATAGAGGC‑GGTACACAACACTTTGGTATCGCCAAATTCGAcc > 1:238435/1‑150 (MQ=255)
ccgcTTCACGAGCGTTACGGGTGTGGGTAGAACGTGGCAGCATGCCGTACTCTGCGGTGATCCAGCCCTGGCCCTGACCTTTCAGGAAGCGCAGCACGCCTTCTTCAATAGAGGC‑GGTACACAACACTTTGGTATCGCCAAATTCGAcc > 1:1117128/1‑149 (MQ=255)
ccgcTTCACGAGCGTTACGGGTGTGGGTAGAACGTGGCAGCATGCCGTACTCTGCGGTGATCCAGCCCTGGCCCTGACCTTTCAGGAAGCGCAGCACGCCTTCTTCAATAGAGGC‑GGTACACAACACTTTGGTATCGCCAAATTCGACCAg < 2:1531321/151‑1 (MQ=255)
cgcTTCACGAGCGTTACGGGTGTGGGTAGAACGTGGCAGCATGCCGTACTCTGCGGTGATCCAGCCCTGGCCCTGACCTTTCAGGAAGCGCAGCACGCCTTCTTCAATAGAGGC‑GGTACACAACACTTTGGTATCGCCAAATTCGACCAGc < 2:863377/151‑1 (MQ=255)
cgcTTCACGAGCGTTACGGGTGTGGGTAGAACGTGGCAGCATGCCGTACTCTGCGGTGATCCAGCCCTGGCCCTGACCTTTCAGGAAGCGCAGCACGCCTTCTTCAATAGAGGC‑GGTACACAACACTTTGGTATCGCCAAATTCGACCAGc < 2:2063818/151‑1 (MQ=255)
cgcTTCACGAGCGTTACGGGTGTGGGTAGAACGTGGCAGCATGCCGTACTCTGCGGTGATCCAGCCCTGGCCCTGACCTTTCAGGAAGCGCAGCACGCCTTCTTCAATAGAGGC‑GGTACACAACACTTTGGTATCGCCAAATTCGACCAGc < 2:647595/151‑1 (MQ=255)
gcTTCACGAGCGTTACGGGTGTGGGTAGAACGTGGCAGCATGCCGTACTCTGCGGTGATCCAGCCCTGGCCCTGACCTTTCAGGAAGCGCAGCACGCCTTCTTCAATAGAGGC‑GGTACACAACACTTTGGTATCGCCAAATTCGACCAGc > 2:412437/1‑150 (MQ=255)
ttCACGAGCGTTACGGGTGTGGGTAGAACGTGGCAGCATGCCGTACTCTGCGGTGATCCAGCCCTGGCCCTGACCTTTCAGGAAGCGCAGCACGCCTTCTTCAATAGAGGC‑GGTACACAACACTTTGGTATCGCCAAATTCGACCAGCAcc > 1:1551297/1‑151 (MQ=255)
tCACGAGCGTTACGGGTGTGGGTAGAACGTGGCAGCATGCCGTACTCTGCGGTGATCCAGCCCTGGCCCTGACCTTTCAGGAAGCGCAGCACGCCTTCTTCAATAGAGGC‑GGTACACAACACTTTGGTATCGCCAAATTCGACCAGCAc < 1:249911/149‑1 (MQ=255)
cACGAGCGTTACGGGTGTGGGTAGAACGTGGCAGCATGCCGTACTCTGCGGTGATCCAGCCCTGGCCCTGACCTTTCAGGAAGCGCAGCACGCCTTCTTCAATAGAGGC‑GGTACACAACACTTTGGTATCGCCAAATTCGACCAGCACCg > 1:875464/1‑150 (MQ=255)
cACGAGCGTTACGGGTGTGGGTAGAACGTGGCAGCATGCCGTACTCTGCGGTGATCCAGCCCTGGCCCTGACCTTTCAGGAAGCGCAGCACGCCTTCTTCAATAGAGGC‑GGTACACAACACTTTGGTATCGCCAAATTCGACCAGCACCGa < 2:445235/151‑1 (MQ=255)
gCGTTACGGGTGTGGGTAGAACGTGGCAGCATGCCGTACTCTGCGGTGATCCAGCCCTGGCCCTGACCTTTCAGGAAGCGCAGCACGCCTTCTTCAATAGAGGC‑GGTACACAACACTTTGGTATCGCCAAATTCGACCAGCACCGAGCCtt > 1:900577/1‑151 (MQ=255)
gTTACGGGTGTGGGTAGAACGTGGCAGCATGCCGTACTCTGCGGTGATCCAGCCCTGGCCCTGACCTTTCAGGAAGCGCAGCACGCCTTCTTCAATAGAGGC‑GGTACACAACACTTTGGTATCGCCAAATTCGACCAGCACCGAGCCTTCt < 1:22113/151‑1 (MQ=255)
gTTACGGGTGTGGGTAGAACGTGGCAGCATGCCGTACTCTGCGGTGATCCAGCCCTGGCCCTGACCTTTCAGGAAGCGCAGCACGCCTTCTTCAATAGAGGC‑GGTACACAACACTTTGGTATCGCCAAATTCGACCAGCACCGAGCCTTCt < 2:1317460/151‑1 (MQ=255)
cGGGTGTGGGTAGAACGTGGCAGCATGCCGTACTCTGCGGTGATCCAGCCCTGGCCCTGACCTTTCAGGAAGCGCAGCACGCCTTCTTCAATAGAGGC‑GGTACACAACACTTTGGTATCGCCAAATTCGACCAGCACCGAGCCTTCTGCAt > 1:856401/1‑151 (MQ=255)
gtgtGGGTAGAACGTGGCAGCATGCCGTACTCTGCGGTGATCCAGCCCTGGCCCTGACCTTTCAGGAAGCGCAGCACGCCTTCTTCAATAGAGGC‑GGTACACAACACTTTGGTATCGCCAAATTCGACCAGCACCGAGCCTTCTGCATGtt > 2:1420324/1‑151 (MQ=255)
gtgtGGGTAGAACGTGGCAGCATGCCGTACTCTGCGGTGATCCAGCCCTGGCCCTGACCTTTCAGGAAGCGCAGCACGCCTTCTTCAATAGAGGC‑GGTACACAACACTTTGGTATCGCCAAATTCGACCAGCACCGAGCCTTCTGCATGtt < 2:1924299/151‑1 (MQ=255)
tgtgGGTAGAACGTGGCAGCATGCCGTACTCTGCGGTGATCCAGCCCTGGCCCTGACCTTTCAGGAAGCGCAGCACGCCTTCTTCAATAGAGGC‑GGTACACAACACTTTGGTATCGCCAAATTCGACCAGCACCGAGCCTTCTGCATGttt > 2:1780606/1‑151 (MQ=255)
aGAACGTGGCAGCATGCCGTACTCTGCGGTGATCCAGCCCTGGCCCTGACCTTTCAGGAAGCGCAGCACGCCTTCTTCAATAGAGGC‑GGTACACAACACTTTGGTATCGCCAAATTCGACCAGCACCGAGCCTTCTGCATGTTTTGTATAg < 2:1512994/151‑1 (MQ=255)
aaCGTGGCAGCATGCCGTACTCTGCGGTGATCCAGCCCTGGCCCTGACCTTTCAGGAAGCGCAGCACGCCTTCTTCAATAGAGGC‑GGTACACAACACTTTGGTATCGCCAAATTCGACCAGCACCGAGCCTTCTGCATGTTTTGTATAg > 1:1310403/1‑149 (MQ=255)
aaCGTGGCAGCATGCCGTACTCTGCGGTGATCCAGCCCTGGCCCTGACCTTTCAGGAAGCGCAGCACGCCTTCTTCAATAGAGGC‑GGTACACAACACTTTGGTATCGCCAAATTCGACCAGCACCGAGCCTTCTGCATGTTTTGTATAGtt < 2:367821/151‑1 (MQ=255)
aaCGTGGCAGCATGCCGTACTCTGCGGTGATCCAGCCCTGGCCCTGACCTTTCAGGAAGCGCAGCACGCCTTCTTCAATAGAGGC‑GGTACACAACACTTTGGTATCGCCAAATTCGACCAGCACCGAGCCTTCTGCATGTTTTGTATAGtt > 2:1730362/1‑151 (MQ=255)
aCGTGGCAGCATGCCGTACTCTGCGGTGATCCAGCCCTGGCCCTGACCTTTCAGGAAGCGCAGCACGCCTTCTTCAATAGAGGC‑GGTACACAACACTTTGGTATCGCCAAATTCGACCAGCACCGAGCCTTCTGCATGTTTTGTATAGtt > 2:1438725/1‑150 (MQ=255)
ggCAGCATGCCGTACTCTGCGGTGATCCAGCCCTGGCCCTGACCTTTCAGGAAGCGCAGCACGCCTTCTTCAATAGAGGC‑GGTACACAACACTTTGGTATCGCCAAATTCGACCAGCACCGAGCCTTCTGCATGTTTTGTATAGTTACGa < 2:2000899/150‑1 (MQ=255)
gcagcaTGCCGTACTCTGCGGTGATCCAGCCCTGGCCCTGACCTTTCAGGAAGCGCAGCACGCCTTCTTCAATAGAGGC‑GGTACACAACACTTTGGTATCGCCAAATTCGACCAGCACCGAGCCTTCTGCATGTTTTGTATAGTTACGAGt < 2:976898/151‑1 (MQ=255)
aTGCCGTACTCTGCGGTGATCCAGCCCTGGCCCTGACCTTTCAGGAAGCGCAGCACGCCTTCTTCAATAGAGGC‑GGTACACAACACTTTGGTATCGCCAAATTCGACCAGCACCGAGCCTTCTGCATGTTTTGTATAGTTACGAGTCAggg > 1:515460/1‑151 (MQ=255)
gCCGTACTCTGCGGTGATCCAGCCCTGGCCCTGACCTTTCAGGAAGCGCAGCACGCCTTCTTCAATAGAGGC‑GGTACACAACACTTTGGTATCGCCAAATTCGACCAGCACCGAGCCTTCTGCATGTGTTGTATAGTTACGAGGCa > 1:193544/1‑146 (MQ=255)
ccGTACTCTGCGGTGATCCAGCCCTGGCCCTGACCTTTCAGGAAGCGCAGCACGCCTTCTTCAATAGAGGC‑GGTACACAACACTTTGGTATCGCCAAATTCGACCAGCACCGAGCCTTCTGCATGTTTTGTATAGTTACGAGTCAGGGt > 1:838906/1‑149 (MQ=255)
ccGTACTCTGCGGTGATCCAGCCCTGGCCCTGACCTTTCAGGAAGCGCAGCACGCCTTCTTCAATAGAGGC‑GGTACACAACACTTTGGTATCGCCAAATTCGACCAGCACCGAGCCTTCTGCATGTTTTGTATAGTTACGAGTCAGGGTaa < 2:348198/151‑1 (MQ=255)
cGTACTCTGCGGTGATCCAGCCCTGGCCCTGACCTTTCAGGAAGCGCAGCACGCCTTCTTCAATAGAGGC‑GGTACACAACACTTTGGTATCGCCAAATTCGACCAGCACCGAGCCTTCTGCATGTTTTGTATAGTTACGAGTCAGGGTaa > 2:648423/1‑150 (MQ=255)
cGTACTCTGCGGTGATCCAGCCCTGGCCCTGACCTTTCAGGAAGCGCAGCACGCCTTCTTCAATAGAGGC‑GGTACACAACACTTTGGTATCGCCAAATTCGACCAGCACCGAGCCTTCTGCATGTTTTGTATAGTTACGAGTCAGGGTAAc > 2:1078036/1‑151 (MQ=255)
gTACTCTGCGGTGATCCAGCCCTGGCCCTGACCTTTCAGGAAGCGCAGCACGCCTTCTTCAATAGAGGC‑GGTACACAACACTTTGGTATCGCCAAATTCGACCAGCACCGAGCCTTCTGCATGTTTTGTATAGTTACGAGTCAGGGTAACg < 2:1080275/151‑1 (MQ=255)
gTACTCTGCGGTGATCCAGCCCTGGCCCTGACCTTTCAGGAAGCGCAGCACGCCTTCTTCAATAGAGGC‑GGTACACAACACTTTGGTATCGCCAAATTCGACCAGCACCGAGCCTTCTGCATGTTTTGTATAGTTACGAGTCAGGGTAACg < 2:2036708/151‑1 (MQ=255)
tACTCTGCGGTGATCCAGCCCTGGCCCTGACCTTTCAGGAAGCGCAGCACGCCTTCTTCAATAGAGGC‑GGTACACAACACTTTGGTATCGCCAAATTCGACCAGCACCGAGCCTTCTGCATGTTTTGTATAGTTACGAGTCAGGGTAACgg > 1:1398053/1‑151 (MQ=255)
tACTCTGCGGTGATCCAGCCCTGGCCCTGACCTTTCAGGAAGCGCAGCACGCCTTCTTCAATAGAGGC‑GGTACACAACACTTTGGTATCGCCAAATTCGACCAGCACCGAGCCTTCTGCATGTTTTGTATAGTTACGAGTCAGGGGAACgg > 2:1842200/1‑151 (MQ=255)
ctGCGGTGATCCAGCCCTGGCCCTGACCTTTCAGGAAGCGCAGCACGCCTTCTTCAATAGAGGC‑GGTACACAACACTTTGGTATCGCCAAATTCGACCAGCACCGAGCCTTCTGCATGTTTTGTATAGTTACGAGTCAGGGTAACGGGa < 2:2044515/149‑1 (MQ=255)
ctGCGGTGATCCAGCCCTGGCCCTGACCTTTCAGGAAGCGCAGCACGCCTTCTTCAATAGAGGC‑GGTACACAACACTTTGGTATCGCCAAATTCGACCAGCACCGAGCCTTCTGCATGTTTTGTATAGTTACGAGTCAGGGTAACGGGACg > 1:1782132/1‑151 (MQ=255)
gCGGTGATCCAGCCCTGGCCCTGACCTTTCAGGAAGCGCAGCACGCCTTCTTCAATAGAGGC‑GGTACACAACACTTTGGTATCGCCAAATTCGACCAGCACCGAGCCTTCTGCATGTTTTGTATAGTTACGAGTCAGGGTAACGGGACGCa < 2:2012401/151‑1 (MQ=255)
tGATCCAGCCCTGGCCCTGACCTTTCAGGAAGCGCAGCACGCCTTCTTCAATAGAGGC‑GGTACACAACACTTTGGTATCGCCAAATTCGACCAGCACCGAGCCTTCTGCATGTTTTGTATAGTTACGAGTCAGGGTAACGGGACGCACCTg > 1:1810704/1‑151 (MQ=255)
aTCCAGCCCTGGCCCTGACCTTTCAGGAAGCGCAGCACGCCTTCTTCAATAGAGGC‑GGTACACAACACTTTGGTATCGCCAAATTCGACCAGCACCGAGCCTTCTGCATGTTTTGTATAGTTACGAGTCAGGGTAACGGGACGCACCTGat < 2:333854/151‑1 (MQ=255)
ccAGCCCTGGCCCTGACCTTTCAGGAAGCGCAGCACGCCTTCTTCAATAGAGGC‑GGTACACAACACTTTGGTATCGCCAAATTCGACCAGCACCGAGCCTTCTGCATGTTTTGTATAGTTACGAGTCAGGGTAACGGGACGCACCTGatt < 1:606897/150‑1 (MQ=255)
aGCCCTGGCCCTGACCTTTCAGGAAGCGCAGCACGCCTTCTTCAATAGAGGC‑GGTACACAACACTTTGGTATCGCCAAATTCGACCAGCACCGAGCCTTCTGCATGTTTTGTATAGTTACGAGTCAGGGTAACGGGACGCACCTGattatt > 1:1647046/1‑151 (MQ=255)
aGCCCTGGCCCTGACCTTTCAGGAAGCGCAGCACGCCTTCTTCAATAGAGGC‑GGTACACAACACTTTGGTATCGCCAAATTCGACCAGCACCGAGCCTTCTGCATGTTTTGTATAGTTACGAGTCAGGGTAACGGGACGCACCTGattatt < 2:1361544/151‑1 (MQ=255)
ccctggccctgACCTTTCAGGAAGCGCAGCACGCCTTCTTCAATAGAGGC‑GGTACACAACACTTTGGTATCGCCAAATTCGACCAGCACCGAGCCTTCTGCATGTTTTGTATAGTTACGAGTCAGGGTAACGGGACGCACCTGATTATTGc < 2:1678225/151‑1 (MQ=255)
ggccctgACCTTTCAGGAAGCGCAGCACGCCTTCTTCAATAGAGGC‑GGTACACAACACTTTGGTATCGCCAAATTCGACCAGCACCGAGCCTTCTGCATGTTTTGTATAGTTACGAGTCAGGGTAACGGGACGCACCTGATTATTGCTACg < 1:1121471/151‑1 (MQ=255)
cctgACCTTTCAGGAAGCGCAGCACGCCTTCTTCAATAGAGGC‑GGTACACAACACTTTGGTATCGCCAAATTCGACCAGCACCGAGCCTTCTGCATGTTTTGTATAGTTACGAGTCAGGGGAACGGGACGCACCTGATTATTGCTACGGcc > 1:2015608/1‑151 (MQ=255)
gACCTTTCAGGAAGCGCAGCACGCCTTCTTCAATAGAGGC‑GGTACACAACACTTTGGTATCGCCAAATTCGACCAGCACCGAGCCTTCTGCATGTTTTGTATAGTTACGAGTCAGGGTAACGGGACGCACCTGATTATTGCTACGGCctgc < 1:1842234/151‑1 (MQ=255)
gACCTTTCAGGAAGCGCAGCACGCCTTCTTCAATAGAGGC‑GGTACACAACACTTTGGTATCGCCAAATTCGACCAGCACCGAGCCTTCTGCATGTTTTGTATAGTTACGAGTCAGGGTAACGGGACGCACCTGATTATTGCTACGGCctg < 2:103954/150‑1 (MQ=255)
aCCTTTCAGGAAGCGCAGCACGCCTTCTTCAATAGAGGC‑GGTACACAACACTTTGGTATCGCCAAATTCGACCAGCACCGAGCCTTCTGCATGTTTTGTATAGTTACGAGTCAGGGTAACGGGACGCACCTGATTATTGCTACGGCctgct > 1:1166380/1‑151 (MQ=255)
ccTTTCAGGAAGCGCAGCACGCCTTCTTCAATAGAGGC‑GGTACACAACACTTTGGTATCGCCAAATTCGACCAGCACCGAGCCTTCTGCATGTTTTGTATAGTTACGAGTCAGGGTAACGGGACGCACCTGATTATTGCTACGGCctgctg < 1:615799/151‑1 (MQ=255)
tttCAGGAAGCGCAGCACGCCTTCTTCAATAGAGGC‑GGTACACAACACTTTGGTATCGCCAAATTCGACCAGCACCGAGCCTTCTGCATGTTTTGTATAGTTACGAGTCAGGGGAACGGGACGCACCTGATTATTGCTACGGCCTGCTgg > 1:37221/1‑150 (MQ=255)
ttCAGGAAGCGCAGCACGCCTTCTTCAATAGAGGC‑GGTACACAACACTTTGGTATCGCCAAATTCGACCAGCACCGAGCCTTCTGCATGTTTTGTATAGTTACGAGTCAGGGTAACGGGACGCACCTGATTATTGCTACGGCCTGCTGGAc > 2:1215737/1‑151 (MQ=255)
cAGGAAGCGCAGCACGCCTTCTTCAATAGAGGC‑GGTACACAACACTTTGGTATCGCCAAATTCGACCAGCACCGAGCCTTCTGCATGTTTTGTATAGTTACGAGTCAGGGTAACGGGACGCACCTGATTATTGCTACGGCCTGCTGGACg < 2:2075835/150‑1 (MQ=255)
ggAAGCGCAGCACGCCTTCTTCAATAGAGGC‑GGTACACAACACTTTGGTATCGCCAAATTCGACCAGCACCGAGCCTTCTGCATGTTTTGTATAGTTACGAGTCAGGGTAACGGGACGCACCTGATTATTGCTACGGCCTGCTGGACGCat < 2:1280320/151‑1 (MQ=255)
gcgcAGCACGCCTTCTTCAATAGAGGC‑GGTACACAACACTTTGGTATCGCCAAATTCGACCAGCACCGAGCCTTCTGCATGTTTTGTATAGTTACGAGTCAGGGTAACGGGACGCACCTGATTATTGCTACGGCCTGCTGGACGCATATTg < 1:1921029/151‑1 (MQ=255)
gcgcAGCACGCCTTCTTCAATAGAGGC‑GGTACACAACACTTTGGTATCGCCAAATTCGACCAGCACCGAGCCTTCTGCATGTTTTGTATAGTTACGAGTCAGGGTAACGGGACGCACCTGATTATTGCTACGGCCTGCTGGACGCATATTg < 1:736928/151‑1 (MQ=255)
cgcaGCACGCCTTCTTCAATAGAGGC‑GGTACACAACACTTTGGTATCGCCAAATTCGACCAGCACCGAGCCTTCTGCATGTTTTGTATAGTTACGAGTCAGGGTAACGGGACGCACCTGATTATTGCTACGGCCTGCTGGACGCATATTg > 2:1942862/1‑150 (MQ=255)
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AGCACGGGCGATCAGACGCTGGATTTCCATTGTGCGTCCACCCTGCTTACCTTTCGCCGCTTCACGAGCGTTACGGGTGTGGGTAGAACGTGGCAGCATGCCGTACTCTGCGGTGATCCAGCCCTGGCCCTGACCTTTCAGGAAGCGCGGCACGCCTTCTTCAATAGAGGC‑GGTACACAACACTTTGGTATCGCCAAATTCGACCAGCACCGAGCCTTCTGCATGTTTTGTATAGTTACGAGTCAGGGTAACGGGACGCACCTGATTATTGCTACGGCCTGCTGGACGCATATTG > NC_000913/3816259‑3816553
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
