Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F50 I3 R1 143 109.6 3434427 98.5% 3382910 150.4

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,505,857 A→G V55A (GTG→GCG)  yhfS ← FNR‑regulated pyridoxal phosphate‑dependent aminotransferase family protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,505,8570AG96.2% 226.1 / ‑3.0 82V55A (GTG→GCG) yhfSFNR‑regulated pyridoxal phosphate‑dependent aminotransferase family protein
Reads supporting (aligned to +/- strand):  ref base A (1/2);  new base G (35/41);  total (36/46)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.91e-01

GTCGTCGGGTAAACAGGCGCGTCATGCACCAGAAGACGCTGCCCCGGTTTGAGCAAAGCCGCCAGCCCGGCGCGAATCGCGCCAGTCCCCGCGCCCTGCACCAGCGCCGCAGCCTGTGCGTGAAATGCATCAGCCAGCACCTGTTCCACACGCTGGGT‑AACGCGCGGTTGATTCAGTCCTGGCGTTAAGCCTAAATCACCGCCAGTAAGAAACTCGCTGCCGGGGAAATGGCGACAAATGCTATCCACCAGCGCAAACTGCTTTTGCTGCGCCTCAATAATCGTCAGGCTTTGC  >  NC_000913/3505710‑3506003
                                                                                                                                                   |                                                                                                                                                   
gtcgtcGGGTAAACAGGCGCGTCATGCACCAGAAGACGCTGCCCCGGTTTGAGCAAAGCCGCCAGCCCGGCGCGAATCGCGCCAGTCCCCGCGCCCTGCACCAGCGCCGCAGCCTGTGCGTGAAATGCATCAGCCAGCACCTGTTCCgcac                                                                                                                                                  >  2:435573/1‑151 (MQ=255)
  cgtcgGGTAAACAGGCGCGTCATGCACCAGAAGACGCTGCCCCGGTTTGAGCAAAGCCGCCAGCCCGGCGCGAATCGCGCCAGTCCCCGCGCCCTGCACCAGCGCCGCAGCCTGTGCGTGAAATGCATCAGCCAGCACCTGTTCCGCACGc                                                                                                                                                >  1:253264/1‑151 (MQ=255)
  cgtcgGGTAAACAGGCGCGTCATGCACCAGAAGACGCTGCCCCGGTTTGAGCAAAGCCGCCAGCCCGGCGCGAATCGCGCCAGTCCCCGCGCCCTGCACCAGCGCCGCAGCCTGTGCGTGAAATGCATCAGCCAGCACCTGTTCCGCACGc                                                                                                                                                >  2:1363727/1‑151 (MQ=255)
     cgGGTAAACAGGCGCGTCATGCACCAGAAGACGCTGCCCCGGTTTGAGCAAAGCCGCCAGCCCGGCGCGAATCGCGCCAGTCCCCGCGCCCTGCACCAGCGCCGCAGCCTGTGCGTGAAATGCATCAGCCAGCACCTGTTCCGCACGCTgg                                                                                                                                             <  2:1358741/151‑1 (MQ=255)
       ggTAAACAGGCGCGTCATGCACCAGAAGACGCTGCCCCGGTTTGAGCAAAGCCGCCAGCCCGGCGCGAATCGCGCCAGTCCCCGCGCCCTGCACCAGCGCCGCAGCCTGTGCGTGAAATGCATCAGCCAGCACCTGTTCCGCACGCTGGGt                                                                                                                                           <  1:1331444/151‑1 (MQ=255)
          aaaCAGGCGCGTCATGCACCAGAAGACGCTGCCCCGGTTTGAGCAAAGCCGCCAGCCCAGCGCGAATCGCGCCAGTCCCCGCGCCCTGCACCAGCGCCGCAGCCTGTGCGTGAAATGCATCAGCCAGCACCTGTTCCGCACGCTGGGT‑aa                                                                                                                                        <  2:1539595/150‑1 (MQ=255)
            aCAGGCGCGTCATGCACCAGAAGACGCTGCCCCGGTTTGAGCAAAGCCGCCAGCCCGGCGCGAATCGCGCCAGTCCCCGCGCCCTGCACCAGCGCCGCAGCCTGTGCGTGAAATGCATCAGCCAGCACCTGTTCCGCACGCTGGGT‑AAcg                                                                                                                                      >  2:409916/1‑150 (MQ=255)
              aGGCGCGTCATGCACCAGAAGACGCTGCCCCGGTTTGAGCAAAGCCGCCAGCCCGGCGCGAATCGCGCCAGTCCCCGCGCCCTGCACCAGCGCCGCAGCCTGTGCGTGAAATGCATCAGCCAGCACCTGTTCCGCACGCTGGGT‑AAcgcgc                                                                                                                                   <  2:68105/151‑1 (MQ=255)
                gcgcGTCATGCACCAGAAGACGCTGCCCCGGTTTGAGCAAAGCCGCCAGCCCGGCGCGAATCGCGCCAGTCCCCGCGCCCTGCACCAGCGCCGCAGCCTGTGCGTGAAATGCATCAGCCAGCACCTGTTCCGCACGCTGGGT‑AACGCGCgg                                                                                                                                 <  2:438980/151‑1 (MQ=255)
                gcgcGTCATGCACCAGAAGACGCTGCCCCGGTTTGAGCAAAGCCGCCAGCCCGGCGCGAATCGCGCCAGTCCCCGCGCCCTGCACCAGCGCCGCAGCCTGTGCGTGAAATGCATCAGCCAGCACCTGTTCCGCACGCTGGGT‑AACGCGCgg                                                                                                                                 <  2:1563645/151‑1 (MQ=255)
                 cgcgTCATGCACCAGAAGACGCTGCCCCGGTTTGAGCAAAGCCGCCAGCCCGGCGCGAATCGCGCCAGTCCCCGCGCCCTGCACCAGCGCCGCAGCCTGTGCGTGAAATGCATCAGCCAGCACCTGTTCCGCACGCTGGGT‑AACGCGCGGt                                                                                                                                >  2:9972/1‑151 (MQ=255)
                  gcgTCATGCACCAGAAGACGCTGCCCCGGTTTGAGCAAAGCCGCCAGCCCGGCGCGAATCGCGCCAGTCCCCGCGCCCTGCACCAGCGCCGCAGCCTGTGCGTGAAATGCATCAGCCAGCACCTGTTCCGCACGCTGGGT‑AACGCGCGGtt                                                                                                                               <  2:336049/151‑1 (MQ=255)
                     tCATGCACCAGAAGACGCTGCCCCGGTTTGAGCAAAGCCGCCAGCCCGGCGCGAATCGCGCCAGTCCCCGCGCCCTGCACCAGCGCCGCAGCCTGTGCGTGAAATGCATCAGCCAGCACCTGTTCCGCACGCTGGGT‑AACGCGCGGTTGAt                                                                                                                            >  2:40681/1‑151 (MQ=255)
                         gCACCAGAAGACGCTGCCCCGGTTTGAGCAAAGCCGCCAGCCCGGCGCGAATCGCGCCAGTCCCCGCGCCCTGCACCAGCGCCGCAGCCTGTGCGTGAAATGCATCAGCCAGCACCTGTTCCGCACGCTGGGT‑AACGCGCGGTTGATTCAg                                                                                                                        <  1:556107/151‑1 (MQ=255)
                             cAGAAGACGCTGCCCCGGTTTGAGCAAAGCCGCCAGCCCGGCGCGAATCGCGCCAGTCCCCGCGCCCTGCACCAGCGCCGCAGCCTGTGCGTGAAATGCATCAGCCAGCACCTGTTCCGCACGCTGGGT‑AACGCGCGGTTGATTCAGTCCt                                                                                                                    <  2:224227/151‑1 (MQ=255)
                              agaagaCGCTGCCCCGGTTTGAGCAAAGCCGCCAGCCCGGCGCGAATCGCGCCAGTCCCCGCGCCCTGCACCAGCGCCGCAGCCTGTGCGTGAAATGCATCAGCCAGCACCTGTTCCGCACGCTGGGT‑AACGCGCGGTTGATTCAGTCCTg                                                                                                                   <  1:1159826/151‑1 (MQ=255)
                                aagaCGCTGCCCCGGTTTGAGCAAAGCCGCCAGCCCGGCGCGAATCGCGCCAGTCCCCGCGCCCTGCACCAGCGCCGCAGCCTGTGCGTGAAATGCATCAGCCAGCACCTGTTCCGCACGCTGGGT‑AACGCGCGGTTGATTCAGTCCTGGc                                                                                                                 >  1:1311843/1‑151 (MQ=255)
                                aagaCGCTGCCCCGGTTTGAGCAAAGCCGCCAGCCCGGCGCGAATCGCGCCAGTCCCCGCGCCCTGCACCAGCGCCGCAGCCTGTGCGTGAAATGCATCAGCCAGCACCTGTTCCGCACGCTGGGT‑AACGCGCGGTTGATTCAGTCCTGGc                                                                                                                 >  2:267441/1‑151 (MQ=255)
                                aagaCGCTGCCCCGGTTTGAGCAAAGCCGCCAGCCCGGCGCGAATCGCGCCAGTCCCCGCGCCCTGCACCAGCGCCGCAGCCTGTGCGTGAAATGCATCAGCCAGCACCTGTTCCGCACGCTGGGT‑AACGCGCGGTTGATTCAGTCCTGGc                                                                                                                 <  1:1181853/151‑1 (MQ=255)
                                 agaCGCTGCCCCGGTTTGAGCAAAGCCGCCAGCCCGGCGCGAATCGCGCCAGTCCCCGCGCCCTGCACCAGCGCCGCAGCCTGTGCGTGAAATGCATCAGCCAGCACCTGTTCCGCACGCTGGGT‑AACGCGCGGTTGATTCAGTCCTGGCg                                                                                                                >  2:1282571/1‑151 (MQ=255)
                                 agaCGCTGCCCCGGTTTGAGCAAAGCCGCCAGCCCGGCGCGAATCGCGCCAGTCCCCGCGCCCTGCACCAGCGCCGCAGCCTGTGCGTGAAATGCATCAGCCAGCACCTGTTCCACACGCTGGGT‑AACGCGCGGTTGATTCAGTCCTGGCg                                                                                                                >  2:118886/1‑151 (MQ=255)
                                   aCGCTGCCCCGGTTTGAGCAAAGCCGCCAGCCCGGCGCGAATCGCGCCAGTCCCCGCGCCCTGCACCAGCGCCGCAGCCTGTGCGTGAAATGCATCAGCCAGCACCTGTTCCGCACGCTGGGT‑AACGCGCGGTTGATTCAGTCCTGGCGtt                                                                                                              >  1:1510945/1‑151 (MQ=255)
                                       tGCCCCGGTTTGAGCAAAGCCGCCAGCCCGGCGCGAATCGCGCCAGTCCCCGCGCCCTGCACCAGCGCCGCAGCCTGTGCGTGAAATGCATCAGCCAGCACCTGTTCCGCACGCTGGGT‑AACGCGCGGTTGATTCAGTCCTGGCGTTaa                                                                                                            <  1:1071576/149‑1 (MQ=255)
                                       tGCCCCGGTTTGAGCAAAGCCGCCAGCCCGGCGCGAATCGCGCCAGTCCCCGCGCCCTGCACCAGCGCCGCAGCCTGTGCGTGAAATGCATCAGCCAGCACCTGTTCCGCACGCTGGGT‑AACGCGCGGTTGATTCAGTCCTGGCGTTAAGc                                                                                                          >  1:969178/1‑151 (MQ=255)
                                          cccGGTTTGAGCAAAGCCGCCAGCCCGGCGCGAATCGCGCCAGTCCCCGCGCCCTGCACCAGCGCCGCAGCCTGTGCGTGAAATGCATCAGCCAGCACCTGTTCCGCACGCTGGGT‑AACGCGCGGTTGATTCAGTCCTGGCGTTAAGCCTa                                                                                                       <  2:420610/151‑1 (MQ=255)
                                           ccGGTTTGAGCAAAGCCGCCAGCCCGGCGCGAATCGCGCCAGTCCCCGCGCCCTGCACCAGCGCCGCAGCCTGTGCGTGAAATGCATCAGCCAGCACCTGTTCCGCACGCTGGGT‑AACGCGCGGTTGATTCAGTCCTGGCGTTAAGCCTa                                                                                                       >  1:183547/1‑150 (MQ=255)
                                            cGGTTTGAGCAAAGCCGCCAGCCCGGCGCGAATCGCGCCAGTCCCCGCGCCCTGCACCAGCGCCGCAGCCTGTGCGTGAAATGCATCAGCCAGCACCTGTTCCGCACGCTGGGT‑AACGCGCGGTTGATTCAGTCCTGGCGTTAAGCCTaaa                                                                                                     <  1:394853/151‑1 (MQ=255)
                                            cGGTTTGAGCAAAGCCGCCAGCCCGGCGCGAATCGCGCCAGTCCCCGCGCCCTGCACCAGCGCCGCAGCCTGTGCGTGAAATGCATCAGCCAGCACCTGTTCCGCACGCTGGGT‑AACGCGCGGTTGATTCAGTCCTGGCGTTAAGCCTaaa                                                                                                     <  1:587868/151‑1 (MQ=255)
                                            cGGTTTGAGCAAAGCCGCCAGCCCGGCGCGAATCGCGCCAGTCCCCGCGCCCTGCACCAGCGCCGCAGCCTGTGCGTGAAATGCATCAGCCAGCACCTGTTCCGCACGCTGGGT‑AACGCGCGGTTGATTCAGTCCTGGCGTTAAGCCTaaa                                                                                                     <  2:80651/151‑1 (MQ=255)
                                            cGGTTTGAGCAAAGCCGCCAGCCCGGCGCGAATCGCGCCAGTCCCCGCGCCCTGCACCAGCGCCGCAGCCTGTGCGTGAAATGCATCAGCCAGCACCTGTTCCGCACGCTGGGT‑AACGCGCGGTTGATTCAGTCCTGGCGTTAAGCCTaaa                                                                                                     <  1:759595/151‑1 (MQ=255)
                                              gTTTGAGCAAAGCCGCCAGCCCGGCGCGAATCGCGCCAGTCCCCGCGCCCTGCACCAGCGCCGCAGCCTGTGCGTGAAATGCATCAGCCAGCACCTGTTCCGCACGCTGGGT‑AACGCGCGGTTGATTCAGTCCTGGCGTTAAGCCTAAAt                                                                                                    >  1:1504580/1‑150 (MQ=255)
                                                  gAGCAAAGCCGCCAGCCCGGCGCGAATCGCGCCAGTCCCCGCGCCCTGCACCAGCGCCGCAGCCTGTGCGTGAAATGCATCAGCCAGCACCTGTTCCGCACGCTGGGT‑AACGCGCGGTTGATTCAGTCCTGGCGTTAAGCCTAAATCAcc                                                                                                <  2:968434/150‑1 (MQ=255)
                                                     cAAAGCCGCCAGCCCGGCGCGAATCGCGCCAGTCCCCGCGCCCTGCACCAGCGCCGCAGCCTGTGCGTGAAATGCATCAGCCAGCACCTGTTCCGCACGCTGGGT‑AACGCGCGGTTGATTCAGTCCTGGCGTTAAGCCTAAATCACCGcc                                                                                             >  1:1305771/1‑150 (MQ=255)
                                                      aaaGCCGCCAGCCCGGCGCGAATCGCGCCAGTCCCCGCGCCCTGCACCAGCGCCGCAGCCTGTGCGTGAAATGCATCAGCCAGCACCTGTTCCGCACGCTGGGT‑AACGCGCGGTTGATTCAGTCCTGGCGTTAAGCCTAAATCACCGCCAg                                                                                           <  2:1620703/151‑1 (MQ=255)
                                                              cAGCCCGGCGCGAATCGCGCCAGTCCCCGCGCCCTGCACCAGCGCCGCAGCCTGTGCGTGAAATGCATCAGCCAGCACCTGTTCCGCACGCTGGGT‑AACGCGCGGTTGATTCAGTCCTGGCGTTAAGCCTAAATCACCGCCAGTAAGAAAc                                                                                   >  1:133836/1‑151 (MQ=255)
                                                               aGCCCGGCGCGAATCGCGCCAGTCCCCGCGCCCTGCACCAGCGCCGCAGCCTGTGCGTGAAATGCATCAGCCAGCACCTGTTCCGCACGCTGGGT‑AACGCGCGGTTGATTCAGTCCTGGCGTTAAGCCTAAATCACCGCCAGTAAGAAACt                                                                                  >  2:80624/1‑151 (MQ=255)
                                                                 ccgggCGCGAATCGCGCCAGCCCCCGCCCCCTGCCCCAGCGCCGCGGCTTGTGCGTAAAATGCATCAGCCAGCCCCTGTCCCGCACGCTGGGT‑AACGCGCGGTTGATTCAGTCCGGGCGTTAAGCCTAAATCACCGCCAGTAAGAAACTc                                                                                 <  1:1676170/147‑1 (MQ=255)
                                                                   cGGCGCGAATCGCGCCAGTCCCCGCGCCCTGCACCAGCGCCGCAGCCTGTGCGTGAAATGCATCAGCCAGCACCTGTTCCGCACGCTGGGT‑AACGCGCGGTTGATTCAGTCCTGGCGTTAAGCCTAAATCACCGCCAGTAAGAAACTCGCt                                                                              >  2:1134997/1‑151 (MQ=255)
                                                                    ggCGCGACCCGCGCCAGCCCCCGCGCCCTGCACCAGCGCCGCAGCCTGTGCGTGAAATGCATCAGCCAGCACCTTTTCCGCCCGCTGGGT‑ACCGCGCGGTTGTTTCAGTCCTGGCGTTAAGCCAAAATCACCGCCAGTAAGAAACTCGCt                                                                              <  2:247731/150‑1 (MQ=255)
                                                                    ggCGCGAACCGCGCCGGTCCCCGCGCCCTCCCCCAGCGCCGCGGCCGGGGCGTAAAATGCATCAGCCAGCACCTGTTCCGCACGTTGGGT‑AAGGCGGGGTTGTTCCAGCCCGGGCGTTAAGCCTAAACCACCGCCAGTAAGAAACTCGCt                                                                              <  2:1483511/150‑1 (MQ=255)
                                                                       gggAATCGCCCCAGCCCCCGCGCCCTGCCCCGGCCCCGCGGCCTGTGGGTGAAATGCATCACCCACCCCCTGTCCCCCACGCTGGGA‑ACCGGGCGGTTGATTCAGCCCTGGCGTTAAGCCAAAACCACCGCCAGTAAGAAACTCGCTGcc                                                                           <  1:526184/148‑1 (MQ=255)
                                                                           accgcgCCAGCCCCCGCCCCCTGCCCCGGCGCCGCAGCTTGTGCGTGAAATGAACCAGCCAGCCCCTGTCCCGCCCGCTGGGT‑ACCGCGCGGTTGATTCAGTCCTGGCTTTAAGCCAAAATCACCGCCAGTAAGAAACTCGCTGCCggg                                                                        <  1:737107/147‑1 (MQ=255)
                                                                               cgcCAGCCCCCGCGCCCCGCACCGGCGCCGCGGCCTGTGCGTAAAATGCATCACCCAGCACCTGTTCCGCCCGCGGGGT‑AACGCGCGGTTGATACAGCCCTGGCGTAAAGCCAAAAACACCGCCAGTAAGAAACTCGCTGCCGGGGAAATg                                                                  <  2:1450024/151‑1 (MQ=255)
                                                                               cgcCAGCCCCCGCCCCCTCCCCCAGCGCCGCAGCCTGTGCGTAAAATGCATCAGCCAGCACCTGTCCCGCACGCTGGGT‑ACCGCGGGGTTGATTCAGTCCGGGCGTTAAGCAAAAATCACCGCCAGTAAGAAACTCGCTGCCGGGGaa                                                                     <  2:510510/148‑1 (MQ=255)
                                                                                 cgattCCCCGCCCCCAGCCCCTGGGCCGCACGCTGGGGGTGAAATAAAAAAGCCGGCCCGTGTCCCGCCCGGTGGGT‑AACGGGGGGTGAATTCAGCCCGGGCTTGATACCTAATTCACCGCCAGTAAGAAACTCGCTGCCgggg                                                                       <  1:98175/140‑1 (MQ=255)
                                                                                 ccAGCCCCCGCCCCCTGCCCCGGCGCCGCAGCTTGGGCGTGAAAGGCACCAGCCAGCACCTGTTCCGCACGGTGGGT‑AACGCGCGGTTGATTCAGTCCTGGCGTAAAGCCTAAATCACCGCCAGTAAGAAACTCGCTGCCGGGGAAATgg                                                                 <  1:45317/150‑1 (MQ=255)
                                                                                       cccGCGCCCTGCACCAGCGCCGCAGCCTGTGCGTGAAATGCATCAGCCAGCACCTGTTCCGCACGCTGGGT‑AACGCGCGGTTGATTCAGTCCTGGCGTTAAGCCTAAATCACCGCCAGTAAGAAACTCGCTGCCGGGGAAATGGCGACaa                                                           >  1:1224536/1‑150 (MQ=255)
                                                                                       cccGCGCCCTGCACCAGCGCCGCAGCCTGTGCGTGAAATGCATCAGCCAGCACCTGTTCCGCACGCTGGGT‑AACGCGCGGTTGATTCAGTCCTGGCGTTAAGCCTAAATCACCGCCAGTAAGAAACTCGCTGCCGGGGAAATGGCGACaa                                                           >  1:101463/1‑150 (MQ=255)
                                                                                        ccGCGCCCGGCCCCGGCGCCGCGGCCTGTGCGTGAAATGCAACAGCCAGCCCCTGTCCCACACGCTGGGT‑AACGCGGGGTTGATTCAGCCCGGGCGTTAAGCCTAAATCACCGCCAGTAAGAAACTCGCTGCCGGGGAAATGGCGACAAAt                                                         <  1:1242343/151‑1 (MQ=255)
                                                                                         cgcgCCCTGCACCAGCGCCGCAGCCTGTGCGTGAAATGCATCAGCCAGCACCTGTTCCGCACGCTGGGT‑AACGCGCGGTTGATTCAGTCCTGGCGTTAAGCCTAAATCACCGCCAGTAAGAAACTCGCTGCCGGGGAAATGGCGACAAATg                                                        >  1:733135/1‑151 (MQ=255)
                                                                                           cgcCCTGCCCCAGCGCCGCAGCTTGTGCGTAAAATGCATCAGCCAGCCCCTGTCCCGCCCGCGGGGT‑AACGCGCGGTGGATTCAGTCCGGGCGTTAAGCCTAAATCTCCGCCAGTAAGAAACTCGCTGCCGGGGAAATGGCGACAAATGCt                                                      <  1:1557569/151‑1 (MQ=255)
                                                                                                tGCACCAGCGCCGCAGCCTGTGCGTGAAATGCATCAGCCAGCACCTGTTCCGCACGCTGGGT‑AACGCGCGGTTGATTCAGTCCTGGCGTTAAGCCTAAATCACCGCCAGTAAGAAACTCGCTGCCGGGGAAATGGCGACAAATGCTATcc                                                  >  2:1662427/1‑150 (MQ=255)
                                                                                                     cgccacggcggCCTGGGGGTGAAACGCATCCGCCACCCCTGGTACCGCACGCTGGGT‑AACGGGGGGTGGATTCGGCCCTGGCTTTAAGCCTAAAACACCGCCAGTAAGAAACTCGCTGCCGGGGAAATGGCGACAAATGCTATCCACCAgc                                            <  2:1491721/141‑1 (MQ=255)
                                                                                                        cgccgcAGCCTGTGCGTGAAATGCATCAGCCAGCACCTGTTCCGCACGCTGGGT‑AACGCGCGGTTGATTCAGTCCTGGCGTTAAGCCTAAATCACCGCCAGTAAGAAACTCGCTGCCGGGGAAATGGCGACAAATGCTATCCACCAgcgc                                          >  2:490126/1‑150 (MQ=255)
                                                                                                          ccgcGGCCGGTGGGTAAAATGCATCCGCCACCCCCTGTCCCGCCCGCTGGGT‑AACGCGGGGTTGATTCAGTCCGGGCGTAAACCCTAAATCACCGCCAGTAAGAAACTCGCTGCCGGGGAAATGGCGACAAATGCTATCCACCAgc                                            <  2:402525/146‑1 (MQ=255)
                                                                                                          ccgcAGCCTGTGCGTGAAATGCATCAGCCAGCACCTGTTCCGCACGCTGGGT‑AACGCGCGGTTGATTCAGTCCTGGCGTTAAGCCTAAATCACCGCCAGTAAGAAACTCGCTGCCGGGGAAATGGCGACAAATGCTATCCACCAGCGCaa                                        >  1:1707889/1‑150 (MQ=255)
                                                                                                             cAGCCTGTGCGTGAAATGCATCAGCCAGCACCTGTTCCGCACGCTGGGT‑AACGCGCGGTTGATTCAGTCCTGGCGTTAAGCCTAAATCACCGCCAGTAAGAAACTCGCTGCCGGGGAAATGGCGACAAATGCTATCCACCAGCGCAAACTg                                    >  2:450872/1‑151 (MQ=255)
                                                                                                                ccTGTGCGTAAAATGCATCAGCCAGCACCTGTCCCGCACGCTGGGT‑AACGCGCGGTTGATTCAGTCCTGGCGTTAAGCCTAAATCACCGCCAGTAAGAAACTCGCTGCCGGGGAAATGGCGACAAATGCTATCCACCAGCGCAAACTGc                                   <  2:904464/149‑1 (MQ=255)
                                                                                                                  tgggCGTGAATAGCTTCCGCCAGCACCTGTGCCGCACG‑TGGGTAAACGCGGGGTTTTTTCAGTCTTGGGGTAAAGCCAAAACCACCGCCAGTAAGAAACTCGCTGCCGGGGAAATGGCGACAAATGCTATCCACCAGCGCAAACTgtt                                  <  1:257449/145‑3 (MQ=255)
                                                                                                                   gtgCGTGAAATGCATCAGCCAGCACCTGTTCCGCACGCTGGGT‑AACGCGCGGTTGATTCAGTCCTGGCGTTAAGCCTAAATCACCGCCAGTAAGAAACTCGCTGCCGGGGAAATGGCGACAAATGCTATCCACCAGCGCAAACTGCTTTtg                              >  2:1461928/1‑151 (MQ=255)
                                                                                                                   gggCGTGAAATGCACCAGCCAGCCCGTGTCCCGCACGCTGGGT‑ACCGCGGGGTTGGTTCAGTCCGGGCGTTAAGCTTAAATCACCGCCAGTAAGAAACTCGCTGCCGGGGAAATGGCGACAAATGCTATCCACCAGCGCAAACTGCtt                                 <  1:1293476/146‑1 (MQ=255)
                                                                                                                   gggCGTAAAATGCACCGGCCAGCCCCTGTCCCGCACGCGGGGT‑ACCGCGGGGTTGTTTCAGCCCGGGCGTAAAGCCAAAATCACCGCCAGTAAGAAACTCGCTGCCGGGGAAATGGCGACAAATGCTATCCACCAGCGCAAACt                                     <  1:1675119/142‑1 (MQ=255)
                                                                                                                    tgCGTGAAATGCATCAGCCAGCACCTGTTCCGCACGCTGGGT‑AACGCGCGGTTGATTCAGTCCTGGCGTTAAGCCTAAATCACCGCCAGTAAGAAACTCGCTGCCGGGGAAATGGCGACAAATGCTATCCACCAGCGCAAACTGCTTTtgc                             >  2:59842/1‑151 (MQ=255)
                                                                                                                          aaaTGCTTCAGCAGCCTCCTGTCCCGCCCGCGGGGT‑ACCGGGCGGGTGATTCGGTCCTGGCGTAAAACCAAAACCACCGCCAGTAAGAAACTCGCTGCCGGGGAAATGGCGACAAATGCTATCCACCAGCGCAAACTGCTTTtgctg                           <  1:1151121/147‑1 (MQ=255)
                                                                                                                          aaaTGCATCAGCCAGCACCTGTCCCACACGGGGGGT‑AACGCGGGGTTGATTCAGTCCGGGCGTAAAGCCAAAATCACCGCCAGTAAGAAACTCGCTGCCGGGGAAATGGCGACAAATGCTATCCACCAGCGCAAACTGCTTTtgctgc                          <  1:118878/148‑1 (MQ=255)
                                                                                                                              gCATCAGCCAGCACCTGTTCCGCACGCTGGGT‑AACGCGCGGTTGATTCAGTCCTGGCGTTAAGCCTAAATCACCGCCAGTAAGAAACTCGCTGCCGGGGAAATGGCGACAAATGCTATCCACCAGCGCAAACTGCTTTTGCTGCGCCTCa                    >  1:316882/1‑150 (MQ=255)
                                                                                                                               caccagccggcCCCTTTCCCGCACGCTGGGT‑ATCGCGCGGTTATTTCAGCCCGGGCGTAAGGCCAAAAACACCGCCAGTAAGAAACTCGCTGCCGGGGAAATGGCGACAAATGCTATCCACCAGCGCAAACTGCTTTTGCTGCGCCTCaat                  <  1:1363635/148‑1 (MQ=255)
                                                                                                                               cATCAGCAACCCCCTGTTCCGCACGCGGGGT‑AACGCGCGGTTGATTCAGTCCGGGCGTTAAGCCTAAATCACCGCCAGTAAGAAACTCGCTGCCGGGGAAATGGCGACAAATGCTATCCACCAGCGCAAACTGCTTTTGCTGCGCCTCaa                   <  2:1224631/150‑1 (MQ=255)
                                                                                                                               cATCACCCAGCGCCTGTCCCCCACCCTGGGT‑AACGCGCGGTTTATACAGCCCTGGCGTTAAGCCCAAATCCCCGCCAGTAAGAAACTCGCTGCCGGGGAAATGGCGACAAATGCTATCCACCAGCGCAAACTGCTTTTGCTGCGCCTCa                    <  2:1716749/149‑1 (MQ=255)
                                                                                                                                   agccagcACCTGTTCCGCACGCTGGGT‑AACGCGCGGTTGATTCAGTCCTGGCGTTAAGCCTAAATCACCGCCAGTAAGAAACTCGCTGCCGGGGAAATGGCGACAAATGCTATCCACCAGCGCAAACTGCTTTTGCTGCGCCTCAATAATc              >  1:615683/1‑151 (MQ=255)
                                                                                                                                     ccagcACCTGTTCCGCACGCTGGGT‑AACGCGCGGTTGATTCAGTCCTGGCGTTAAGCCTAAATCACCGCCAGTAAGAAACTCGCTGCCGGGGAAATGGCGACAAATGCTATCCACCAGCGCAAACTGCTTTTGCTGCGCCTCAATAATCGt            >  1:1349004/1‑151 (MQ=255)
                                                                                                                                     ccagcACCTGTTCCGCACGCTGGGT‑AACGCGCGGTTGATTCAGTCCTGGCGTTAAGCCTAAATCACCGCCAGTAAGAAACTCGCTGCCGGGGAAATGGCGACAAATGCTATCCACCAGCGCAAACTGCTTTTGCTGCGCCTCAATAATCGt            >  1:1202403/1‑151 (MQ=255)
                                                                                                                                     ccacccccTGTTCCTCCCGCTGGCT‑ACCGCGCGTTTGATTCAGTCCGGGCGTTAAGCCAAAATCACCGCCAGTAAGAAACTCGCTGCCGGGGAAATGGCGACAAATGCTATCCACCAGCGCAAACTGCTTTTGCTGCGCCTCaataa                <  1:424523/141‑1 (MQ=255)
                                                                                                                                      cagcACCTGTTCCGCACGCTGGGT‑AACGCGCGGTTGATTCAGTCCTGGCGTTAAGCCTAAATCACCGCCAGTAAGAAACTCGCTGCCGGGGAAATGGCGACAAATGCTATCCACCAGCGCAAACTGCTTTTGCTGCGCCTCAATAATCGTc           >  2:1380375/1‑151 (MQ=255)
                                                                                                                                         cACCTGTTCCGCACGCTGGGT‑AACGCGCGGTTGATTCAGTCCTGGCGTTAAGCCTAAATCACCGCCAGTAAGAAACTCGCTGCCGGGGAAATGGCGACAAATGCTATCCACCAGCGCAAACTGCTTTTGCTGCGCCTCAATAATCGTCAgg        >  2:1373579/1‑151 (MQ=255)
                                                                                                                                         cACCTGTCCCGCCCGTGGGGT‑ACCGCGCGGTTGATTCAGCCCGGGCGTAAAGCCTAAATCACCGCCAGTAAGAAACTCGCTGCCGGGGAAATGGCGACAAATGCTATCCACCAGCGCAAACTGCTTTTGCTGCGCCTCAATAATCGTCAgg        <  2:746422/151‑1 (MQ=255)
                                                                                                                                          aCCTGTCCCGCACGCGGGGT‑AACGCGCGGTTGATTCAGTCCTGGCGTTAAGCCAAAATCACCGCCAGTAAGAAACTCGCTGCCGGGGAAATGGCGACAAATGCTATCCACCAGCGCAAACTGCTTTTGCTGCGCCTCAATAATCGTCAg         <  1:367675/149‑1 (MQ=255)
                                                                                                                                           ccTGTCCCGCACGCTGGGT‑AACGCGGGGTTGATTCAGCCCTGGCGTTAAGCCTAAATCACCGCCAGTAAGAAACTCGCTGCCGGGGAAATGGCGACAAATGCTATCCACCAGCGCAAACTGCTTTTGCTGCGCCTCAATAATCGTc           <  2:521609/146‑1 (MQ=255)
                                                                                                                                           ccTGTCCCGCACGCTGGGT‑AACGCGGGGTTGATCCAGCCCGGGCGTTAAGCCTAAATCACCGCCAGTAAGAAACTCGCTGCCGGGGAAATGGCGACAAATGCTATCCACCAGCGCAAACTGCTTTTGCTGCGCCTCAATAATCGTc           <  1:9969/146‑1 (MQ=255)
                                                                                                                                            cTGTTCCGCACGCTGGGT‑AACGCGCGGTTGATTCAGTCCTGGCGTTAAGCCTAAATCACCGCCAGTAAGAAACTCGCTGCCGGGGAAATGGCGACAAATGCTATCCACCAGCGCAAACTGCTTTTGCTGCGCCTCAATAATCGTCAGGCtt     >  2:462711/1‑151 (MQ=255)
                                                                                                                                            cTGTTCCGCACGCTGGGT‑AACGCGCGGTTGATTCAGTCCTGGCGTTAAGCCTAAATCACCGCCAGTAAGAAACTCGCTGCCGGGGAAATGGCGACAAATGCTATCCACCAGCGCAAACTGCTTTTGCTGCGCCTCAATAATCGTCAGGCtt     >  2:1533888/1‑151 (MQ=255)
                                                                                                                                              gTTCCGCACGCTGGGT‑AACGCGCGGTTGATTCAGTCCTGGCGTTAAGCCTAAATCACCGCCAGTAAGAAACTCGCTGCCGGGGAAATGGAGACAAATGCTATCCACCAGCGCAAACTGCTTTT‑CTGCGCCTCAATAATCGTCAGGCTTTg   >  1:864717/1‑150 (MQ=255)
                                                                                                                                               ttCCGCACGCTGGGT‑AACGCGCGGTTGATTCAGTCCTGGCGTTAAGCCTAAATCACCGCCAGTAAGAAACTCGCTGCCGGGGAAATGGCGACAAATGCTATCCACCAGCGCAAACTGCTTTTGCTGCGCCTCAATAATCGTCAGGCTTTGc  >  2:1497969/1‑151 (MQ=255)
                                                                                                                                                   |                                                                                                                                                   
GTCGTCGGGTAAACAGGCGCGTCATGCACCAGAAGACGCTGCCCCGGTTTGAGCAAAGCCGCCAGCCCGGCGCGAATCGCGCCAGTCCCCGCGCCCTGCACCAGCGCCGCAGCCTGTGCGTGAAATGCATCAGCCAGCACCTGTTCCACACGCTGGGT‑AACGCGCGGTTGATTCAGTCCTGGCGTTAAGCCTAAATCACCGCCAGTAAGAAACTCGCTGCCGGGGAAATGGCGACAAATGCTATCCACCAGCGCAAACTGCTTTTGCTGCGCCTCAATAATCGTCAGGCTTTGC  >  NC_000913/3505710‑3506003

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A