Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F50 I3 R1 143 109.6 3434427 98.5% 3382910 150.4

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,272,615 G→A R419R (CGC→CGT)  uvrA ← ATPase and DNA damage recognition protein of nucleotide excision repair excinuclease UvrABC

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,272,6150GA97.2% 406.1 / 0.1 109R419R (CGC→CGT) uvrAATPase and DNA damage recognition protein of nucleotide excision repair excinuclease UvrABC
Reads supporting (aligned to +/- strand):  ref base G (1/2);  new base A (59/47);  total (60/49)
Fisher's exact test for biased strand distribution p-value = 5.87e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.46e-01

Only 100 of 112 total aligned reads displayed.

TTTCAGACGATCGCCGATCTCTTTAAGGATTTTTTCTGCAATCTTCGCCCGCTGACCTGCGAGTTTGAGATTGTTGAAGAATTCCATCGCATGACCAATGCTCATGTCGGAGATAGCAGGCAGCGGCGTATTCTCGACATACACGTGGCGCGCTTCCCGACGCAGACGCGTCCCTTCGCAGCTGGCGCACGGACGATTACTGATAAACTTGGCTAATTCTTCGCGTACCGCGCTGGATTCCGTCTCTTTATAGCGGCGCTCCATATTATGCAGCACGCCTTCGAACGGATGACG  >  NC_000913/4272468‑4272761
                                                                                                                                                   |                                                                                                                                                  
tttCAGACGATCGCCGATCTCTTTAAGGATTTTTTCTGCAATCTTCGCCCGCTGACCTGCGAGTTTGAGATTGTTGAAGAATTCCATCGCATGACCAATGCTCATGTCGGAGATAGCAGGCAGCGGCGTATTCTCGACATACACGTGacgc                                                                                                                                                 >  2:623466/1‑151 (MQ=255)
  tCAGACGATCGCCGATCTCTTTAAGGATTTTTTCTGCAATCTTCGCCCGCTGACCTGCGAGTTTGAGATTGTTGAAGAATTCCATCGCATGACCAATGCTCATGTCGGAGATAGCAGGCAGCGGCGTATTCTCGACATACACGTGacgcg                                                                                                                                                <  2:1405188/150‑1 (MQ=255)
  tCAGACGATCGCCGATCTCTTTAAGGATTTTTTCTGCAATCTTCGCCCGCTGACCTGCGAGTTTGAGATTGTTGAAGAATTCCATCGCATGACCAATGCTCATGTCGGAGATAGCAGGCAGCGGCGTATTCTCGACATACACGTGacgcg                                                                                                                                                <  2:1555601/150‑1 (MQ=255)
   cAGACGATCGCCGATCTCTTTAAGGATTTTTTCTGCAATCTTCGCCCGCTGACCTGCGAGTTTGAGATTGTTGAAGAATTCCATCGCATGACCAATGCTCATGTCGGAGATAGCAGGCAGCGGCGTATTCTCGACATACACGTGACGCGCt                                                                                                                                              <  1:1098338/151‑1 (MQ=255)
   cAGACGATCGCCGATCTCTTTAAGGATTTTTTCTGCAATCTTCGCCCGCTGACCTGCGAGTTTGAGATTGTTGAAGAATTCCATCGCATGACCAATGCTCATGTCGGAGATAGCAGGCAGCGGCGTATTCTCGACATACACGTGACGCGCt                                                                                                                                              <  1:1172621/151‑1 (MQ=255)
      aCGATCGCCGATCTCTTTAAGGATTTTTTCTGCAATCTTCGCCCGCTGACCTGCGAGTTTGAGATTGTTGAAGAATTCCATCGCATGACCAATGCTCATGTCGGAGATAGCAGGCAGCGGCGTATTCTCGACATACACGTGACGCGCTTcc                                                                                                                                           <  2:203302/151‑1 (MQ=255)
        gATCGCCGATCTCTTTAAGGATTTTTTCTGCAATCTTCGCCCGCTGACCTGCGAGTTTGAGATTGTTGAAGAATTCCATCGCATGACCAATGCTCATGTCGGAGATAGCAGGCAGCGGCGTATTCTCGACATACACGTGACGCGCTTCCCg                                                                                                                                         >  2:670452/1‑151 (MQ=255)
          tCGCCGATCTCTTTAAGGATTTTTTCTGCAATCTTCGCCCGCTGACCTGCGAGTTTGAGATTGTTGAAGAATTCCATCGCATGACCAATGCTCATGTCGGAGATAGCAGGCAGCGGCGTATTCTCGACATACACGTGACGCGCTTCCCGa                                                                                                                                        <  1:1460184/150‑1 (MQ=255)
           cGCCGATCTCTTTAAGGATTTTTTCTGCAATCTTCGCCCGCTGACCTGCGAGTTTGAGATTGTTGAAGAATTCCATCGCATGACCAATGCTCATGTCGGAGATAGCAGGCAGCGGCGTATTCTCGACATACACGTGACGCGCTTCCCGACg                                                                                                                                      <  1:1022648/151‑1 (MQ=255)
           cGCCGATCTCTTTAAGGATTTTTTCTGCAATCTTCGCCCGCTGACCTGCGAGTTTGAGATTGTTGAAGAATTCCATCGCATGACCAATGCTCATGTCGGAGATAGCAGGCAGCGGCGTATTCTCGACATACACGTGACGCGCTTCCCGACg                                                                                                                                      >  1:116356/1‑151 (MQ=255)
           cGCCGATCTCTTTAAGGATTTTTTCTGCAATCTTCGCCCGCTGACCTGCGAGTTTGAGATTGTTGAAGAATTCCATCGCATGACCAATGCTCATGTCGGAGATAGCAGGCAGCGGCGTATTCTCGACATACACGTGACGCGCTTCCCGACg                                                                                                                                      >  1:1194771/1‑151 (MQ=255)
            gCCGATCTCTTTAAGGATTTTTTCTGCAATCTTCGCCCGCTGACCTGCGAGTTTGAGATTGTTGAAGAATTCCATCGCATGACCAATGCTCATGTCGGAGATAGCAGGCAGCGGCGTATTCTCGACATACACGTGACGCGCTTCCCGACGc                                                                                                                                     >  2:833686/1‑151 (MQ=255)
            gCCGATCTCTTTAAGGATTTTTTCTGCAATCTTCGCCCGCTGACCTGCGAGTTTGAGATTGTTGAAGAATTCCATCGCATGACCAATGCTCATGTCGGAGATAGCAGGCAGCGGCGTATTCTCGACATACACGTGACGCGCTTCCCGACGc                                                                                                                                     >  2:415587/1‑151 (MQ=255)
              cGATCTCTTTAAGGATTTTTTCTGCAATCTTCGCCCGCTGACCTGCGAGTTTGAGATTGTTGAAGAATTCCATCGCATGACCAATGCTCATGTCGGAGATAGCAGGCAGCGGCGTATTCTCGACATACACGTGACGCGCTTCCCGACGc                                                                                                                                     >  2:1020580/1‑149 (MQ=255)
               gATCTCTTTAAGGATTTTTTCTGCAATCTTCGCCCGCTGACCTGCGAGTTTGAGATTGTTGAAGAATTCCATCGCATGACCAATGCTCATGTCGGAGATAGCAGGCAGCGGCGTATTCTCGACATACACGTGACGCGCTTCCCGACGc                                                                                                                                     >  2:1486295/1‑148 (MQ=255)
                 tctcTTTAAGGATTTTTTCTGCAATCTTCGCCCGCTGACCTGCGAGTTTGAGATTGTTGAAGAATTCCATCGCATGACCAATGCTCATGTCGGAGATAGCAGGCAGCGGCGTATTCTCGACATACACGTGACGCGCTTCCCGACGCAGAcg                                                                                                                                >  1:92183/1‑151 (MQ=255)
                    ctTTAAGGATTTTTTCTGCAATCTTCGCCCGCTGACCTGCGAGTTTGAGATTGTTGAAGAATTCCATCGCATGACCAATGCTCATGTCGGAGATAGCAGGCAGCGGCGTATTCTCGACATACACGTGACGCGCTTCCCGACGCa                                                                                                                                    <  2:410775/144‑1 (MQ=255)
                    ctTTAAGGATTTTTTCTGCAATCTTCGCCCGCTGACCTGCGAGTTTGAGATTGTTGAAGAATTCCATCGCATGACCAATGCTCATGTCGGAGATAGCAGGCAGCGGCGTATTCTCGACATACACGTGACGCGCTTCCCGACGCAg                                                                                                                                   <  1:690255/145‑1 (MQ=255)
                    ctTTAAGGATTTTTTCTGCAATCTTCGCCCGCTGACCTGCGAGTTTGAGATTGTTGAAGAATTCCATCGCATGACCAATGCTCATGTCGGAGATAGCAGGCAGCGGCGTATTCTCGACATACACGTGACGCGCTTCCCGACGCAGACGCGt                                                                                                                             >  1:751667/1‑151 (MQ=255)
                       tAAGGATTTTTTCTGCAATCTTCGCCCGCTGACCTGCGAGTTTGAGATTGTTGAAGAATTCCATCGCATGACCAATGCTCATGTCGGAGATAGCAGGCAGCGGCGTATTCTCGACATACACGTGACGCGCTTCCCGACGCAGACGCGTccc                                                                                                                          >  2:919976/1‑151 (MQ=255)
                       tAAGGATTTTTTCTGCAATCTTCGCCCGCTGACCTGCGAGGTTGAGATTGTTGAAGAATTCCATCGCATGACCAATGCTCATGTCGGAGATAGCAGGCAGCGGCGTATTCTCGACATACACGTGACGCGCTTCCCGACGCAGACGCGTccc                                                                                                                          >  1:620113/1‑151 (MQ=255)
                         aGGATTTTTTCTGCAATCTTCGCCCGCTGACCTGCGAGTTTGAGATTGTTGAAGAATTCCATCGCATGACCAATGCTCATGTCGGAGATAGCAGGCAGCGGCGTATTCTCGACATACACGTGACGCGCTTCCCGACGCAGACGCGTCCCtt                                                                                                                        >  2:1377942/1‑151 (MQ=255)
                         aGGATTTTTTCTGCAATCTTCGCCCGCTGACCTGCGAGTTTGAGATTGTTGAAGAATTCCATCGCATGACCAATGCTCATGTCGGAGATAGCAGGCAGCGGCGTATTCTCGACATACACGTGACGCGCTTCCCGACGCAGACGCGTCCCtt                                                                                                                        <  1:1584783/151‑1 (MQ=255)
                         aGGATTTTTTCTGCAATCTTCGCCCGCTGACCTGCGAGTTTGAGATTGTTGAAGAATTCCATCGCATGACCAATGCTCATGTCGGAGATAGCAGGCAGCGGCGTATTCTCGACATACACGTGACGCGCTTCCCGACGCAGACGCGTCCCtt                                                                                                                        >  2:92570/1‑151 (MQ=255)
                          ggATTTTTTCTGCAATCTTCGCCCGCTGACCTGCGAGTTTGAGATTGTTGAAGAATTCCATCGCATGACCAATGCTCATGTCGGAGATAGCAGGCAGCGGCGTATTCTCGACATACACGTGACGCGCTTCCCGACGCAGACGCGTCCCTTc                                                                                                                       >  1:732555/1‑151 (MQ=255)
                          ggATTTTTTCTGCAATCTTCGCCCGCTGACCTGCGAGTTTGAGATTGTTGAAGAATTCCATCGCATGACCAATGCTCATGTCGGAGATAGCAGGCAGCGGCGTATTCTCGACATACACGTGACGCGCTTCCCGACGCAGACGCGTCCCTTc                                                                                                                       <  1:520572/151‑1 (MQ=255)
                           gATTTTTTCTGCAATCTTCGCCCGCTGACCTGCGCGTTTGAGATTGTTGAAGAATTCCATCGCATGACCAATGCTCATGTCGGAGATAGCAGGCAGCGGCGTATTCTCGACATACACGTGACGCGCTTCCCGACGCAGACGCGTCCCTTc                                                                                                                       >  2:276532/1‑150 (MQ=255)
                               ttttCTGCAATCTTCGCCCGCTGACCTGCGAGTTTGAGATTGTTGAAGAATTCCATCGCATGACCAATGCTCATGTCGGAGATAGCAGGCAGCGGCGTATTCTCGACATACACGTGACGCGCTTCCCGACGCAGACGCGTCCCTTCGCAg                                                                                                                   <  2:647651/150‑1 (MQ=255)
                               ttttCTGCAATCTTCGCCCGCTGACCTGCGAGTTTGAGATTGTTGAAGAATTCCATCGCATGACCAATGCTCATGTCGGAGATAGCAGGCAGCGGCGTATTCTCGACATACACGTGACGCGCTTCCCGACGCAGACGCGTCCCTTCGCAGc                                                                                                                  >  1:1412021/1‑151 (MQ=255)
                                     gCAATCTTCGCCCGCTGACCTGCGAGTTTGAGATTGTTGAAGAATTCCATCGCATGACCAATGCTCATGTCGGAGATAGCAGGCAGCGGCGTATTCTCGACATACACGTGACGCGCTTCCCGACGCAGACGCGTCCCTTCGCAGCTGgcgc                                                                                                            >  1:604319/1‑151 (MQ=255)
                                      cAATCTTCGCCCGCTGACCTGCGAGTTTGAGATTGTTGAAGAATTCCATCGCATGACCAATGCTCATGTCGGAGATAGCAGGCAGCGGCGTATTCTCGACATACACGTGACGCGCTTCCCGACGCAGACGCGTCCCTTCGCAGCTGgcgc                                                                                                            >  1:1254093/1‑150 (MQ=255)
                                      cAATCTTCGCCCGCTGACCTGCGAGTTTGAGATTGTTGAAGAATTCCATCGCATGACCAATGCTCATGTCGGAGATAGCAGGCAGCGGCGTATTCTCGACATACACGTGACGCGCTTCCCGACGCAGACGCGTCCCTTCGCAGCTGGCGCa                                                                                                           <  2:1451724/151‑1 (MQ=255)
                                         tCTTCGCCCGCTGACCTGCGAGTTTGAGATTGTTGAAGAATTCCATCGCATGACCAATGCTCATGTCGGAGATAGCAGGCAGCGGCGTATTCTCGACATACACGTGACGCGCTTCCCGACGCAGACGCGTCCCTTCGCAGCTGGCGCACgg                                                                                                        >  2:1525718/1‑151 (MQ=255)
                                          cTTCGCCCGCTGACCTGCGAGTTTGAGATTGTTGAAGAATTCCATCGCATGACCAATGCTCATGTCGGAGATAGCAGGCAGCGGCGTATTCTCGACATACACGTGACGCGCTTCCCGACGCAGACGCGTCCCTTCGCAGCTGGCGCACgg                                                                                                        >  1:1567259/1‑150 (MQ=255)
                                            tCGCCCGCTGACCTGCGAGTTTGAGATTGTTGAAGAATTCCATCGCATGACCAATGCTCATGTCGGAGATAGCAGGCAGCGGCGTATTCTCGACATACACGTGACGCGCTTCCCGACGCAGACGCGTCCCTTCGCAGCTGGCGCACGGAc                                                                                                      <  1:261617/150‑1 (MQ=255)
                                            tCGCCCGCTGACCTGCGAGTTTGAGATTGTTGAAGAATTCCATCGCATGACCAATGCTCATGTCGGAGATAGCAGGCAGCGGCGTATTCTCGACATACACGTGACGCGCTTCCCGACGCAGACGCGTCCCTTCGCAGCTGGCGCACGGAc                                                                                                      <  1:678499/150‑1 (MQ=255)
                                            tCGCCCGCTGACCTGCGAGTTTGAGATTGTTGAAGAATTCCATCGCATGACCAATGCTCATGTCGGAGATAGCAGGCAGCGGCGTATTCTCGACATACACGTGACGCGCTTCCCGACGCAGACGCGTCCCTTCGCAGCTGGCGCACGGACg                                                                                                     >  1:660437/1‑151 (MQ=255)
                                            tCGCCCGCTGACCTGCGAGTTTGAGATTGTTGAAGAATTCCATCGCATGACCAATGCTCATGTCGGAGATAGCAGGCAGCGGCGTATTCTCGACATACACGTGACGCGCTTCCCGACGCAGACGCGTCCCTTCGCAGCTGGCGCACGGACg                                                                                                     >  1:1482062/1‑151 (MQ=255)
                                             cGCCCGCTGACCTGCGAGTTTGAGATTGTTGAAGAATTCCATCGCATGACCAATGCTCATGTCGGAGATAGCAGGCAGCGGCGTATTCTCGACATACACGTGACGCGCTTCCCGACGCAGACGCGTCCCTTCGCAGCTGGCGCACGGAct                                                                                                     <  2:613243/150‑2 (MQ=255)
                                              gCCCGCTGACCTGCGAGTTTGAGATTGTTGAAGAATTCCATCGCATGACCAATGCTCATGTCGGAGATAGCAGGCAGCGGCGTATTCTCGACATACACGTGACGCGCTTCCCGACGCAGACGCGTCCCTTCGCAGCTGGCGCACGGACGAt                                                                                                   >  2:1545260/1‑151 (MQ=255)
                                              gCCCGCTGACCTGCGAGTTTGAGATTGTTGAAGAATTCCATCGCATGACCAATGCTCATGTCGGAGATAGCAGGCAGCGGCGTATTCTCGACATACACGTGACGCGCTTCCCGACGCAGACGCGTCCCTTCGCAGCTGGCGCACGGACGAt                                                                                                   <  2:303597/151‑1 (MQ=255)
                                              gCCCGCTGACCTGCGAGTTTGAGATTGTTGAAGAATTCCATCGCATGACCAATGCTCATGTCGGAGATAGCAGGCAGCGGCGTATTCTCGACATACACGTGACGCGCTTCCCGACGCAGACGCGTCCCTTCGCAGCTGGCGCACGGACGAt                                                                                                   >  1:932214/1‑151 (MQ=255)
                                               cccGCTGACCTGCGAGTTTGAGATTGTTGAAGAATTCCATCGCATGACCAATGCTCATGTCGGAGATAGCAGGCAGCGGCGTATTCTCGACATACACGTGACGCGCTTCCCGACGCAGACGCGTCCCTTCGCAGCTGGCGCACGGACGAtt                                                                                                  <  2:1110536/151‑1 (MQ=255)
                                                ccGCTGACCTGCGAGTTTGAGATTGTTGAAGAATTCCATCGCATGACCAATGCTCATGTCGGAGATAGCAGGCAGCGGCGTATTCTCGACATACACGTGACGCGCTTCCCGACGCAGACGCGTCCCTTCGCAGCTGGCGCACGGACGATTa                                                                                                 <  1:1241066/151‑1 (MQ=255)
                                                     gACCTGCGAGTTTGAGATTGTTGAAGAATTCCATCGCATGACCAATGCTCATGTCGGAGATAGCAGGCAGCGGCGTATTCTCGACATACACGTGACGCGCTTCCCGACGCAGACGCGTCCCTTCGCAGCTGGCGCACGGACGATTACTg                                                                                              <  1:1515383/149‑1 (MQ=255)
                                                     gACCTGCGAGTTTGAGATTGTTGAAGAATTCCATCGCATGACCAATGCTCATGTCGGAGATAGCAGGCAGCGGCGTATTCTCGACATACACGTGACGCGCTTCCCGACGCAGACGCGTCCCTTCGCAGCTGGCGCACGGACGATTACTGAt                                                                                            >  1:1358732/1‑151 (MQ=255)
                                                     gACCTGCGAGTTTGAGATTGTTGAAGAATTCCATCGCATGACCAATGCTCATGTCGGAGATAGCAGGCAGCGGCGTATTCTCGACATACACGTGACGCGCTTCCCGACGCAGACGCGTCCCTTCGCAGCTGGCGCACGGACGATTACTGAt                                                                                            >  2:1159209/1‑151 (MQ=255)
                                                          gCGAGTTTGAGATTGTTGAAGAATTCCATCGCATGACCAATGCTCATGTCGGAGATAGCAGGCAGCGGCGTATTCTCGACATACACGTGACGCGCTTCCCGACGCAGACGCGTCCCTTCGCAGCTGGCGCACGGACGATTACTGATaaa                                                                                         <  1:1662636/149‑1 (MQ=255)
                                                          gCGAGTTTGAGATTGTTGAAGAATTCCATCGCATGACCAATGCTCATGTCGGAGATAGCAGGCAGCGGCGTATTCTCGACATACACGTGACGCGCTTCCCGACGCAGACGCGTCCCTTCGCAGCTGGCGCACGGACGATTACTGATAAACt                                                                                       <  2:791406/151‑1 (MQ=255)
                                                          gCGAGTTTGAGATTGTTGAAGAATTCCATCGCATGACCAATGCTCATGTCGGAGATAGCAGGCAGCGGCGTATTCTCGACATACACGTGACGCGCTTCCCGACGCAGACGCGTCCCTTCGCAGCTGGCGCACGGACGATTACTGATAAACt                                                                                       >  1:759246/1‑151 (MQ=255)
                                                           cGAGTTTGAGATTGTTGAAGAATTCCATCGCATGACCAATGCTCATGTCGGAGATAGCAGGCAGCGGCGTATTCTCGACATACACGTGACGCGCTTCCCGACGCAGACGCGTCCCTTCGCAGCTGGCGCACGGACGATTACTGATAAACtt                                                                                      <  1:1199380/151‑1 (MQ=255)
                                                            gAGTTTGAGATTGTTGAAGAATTCCATCGCATGACCAATGCTCATGTCGGAGATAGCAGGCAGCGGCGTATTCTCGACATACACGTGACGCGCTTCCCGACGCAGACGCGTCCCTTCGCAGCTGGCGCACGGACGATTACTGATAAACTTg                                                                                     >  2:856085/1‑151 (MQ=255)
                                                             aGTTTGAGATTGTTGAAGAATTCCATCGCATGACCAATGCTCATGTCGGAGATAGCAGGCAGCGGCGTATTCTCGACATACACGTGACGCGCTTCCCGACGCAGACGCGTCCCTTCGCAGCTGGCGCACGGACGATTACTGATAAACTTgg                                                                                    <  1:1484139/151‑1 (MQ=255)
                                                             aGTTTGAGATTGTTGAAGAATTCCATCGCATGACCAATGCTCATGTCGGAGATAGCAGGCAGCGGCGTATTCTCGACATACACGTGACGCGCTTCCCGACGCAGACGCGTCCCTTCGCAGCTGGCGCACGGACGATTACTGATAAACTTgg                                                                                    <  1:1570575/151‑1 (MQ=255)
                                                                  gagaTTGTTGAAGAATTCCATCGCATGACCAATGCTCATGTCGGAGATAGCAGGCAGCGGCGTATTCTCGACATACACGTGACGCGCTTCCCGACGCAGACGCGTCCCTTCGCAGCTGGCGCACGGACGATTACTGATAAACTTGGCTAAt                                                                               >  1:498381/1‑151 (MQ=255)
                                                                   agaTTGTTGAAGAATTCCATCGCATGACCAATGCTCATGTCGGAGATAGCAGGCAGCGGCGTATTCTCGACATACACGTGACGCGCTTCCCGACGCAGACGCGTCCCTTCGCAGCTGGCGCACGGACGATTACTGATAAACTTGGCTaa                                                                                <  2:490905/149‑1 (MQ=255)
                                                                      ttgttgAAGAATTCCATCGCATGACCAATGCTCATGTCGGAGATAGCAGGCAGCGGCGTATTCTCGACATACACGTGACGCGCTTCCCGACGCAGACGCGTCCCTTCGCAGCTGGCGCACGGACGATTACTGATAAACTTGGCTAAttctt                                                                           >  1:330184/1‑151 (MQ=255)
                                                                      ttgttgAAGAATTCCATCGCATGACCAATGCTCATGTCGGAGATAGCAGGCAGCGGCGTATTCTCGACATACACGTGACGCGCTTCCCGACGCAGACGCGTCCCTTCGCAGCTGGCGCACGGACGATTACTGATAAACTTGGCTAAttctt                                                                           >  1:942547/1‑151 (MQ=255)
                                                                       tgttgAAGAATTCCATCGCATGACCAATGCTCATGTCGGAGATAGCAGGCAGCGGCGTATTCTCGACATACACGTGACGCGCTTCCCGACGCAGACGCGTCCCTTCGCAGCTGGCGCACGGACGATTACTGATAAACTTGGCTAAttcttc                                                                          >  1:274094/1‑151 (MQ=255)
                                                                            aagaaTGCCATCGCATGACCAATGCTCATGTCGGAGATAGCAGGCAGCGGCGTATTCTCGCCATACACGTGACGCTCTCCCCGACGCAGACGCGTCCCTTCGCAGCTGGCGCACGGACGATTACTGATAAACTTGGCTAATTCTTcgcg                                                                       <  2:435443/149‑1 (MQ=255)
                                                                                aTTCCATCGCATGACCAATGCTCATGTCGGAGATAGCAGGCAGCGGCGTATTCTCGACATACACGTGACGCGCTTCCCGACGCAGACGCGTCCCTTCGCAGCTGGCGCACGGACGATTACTGATAAACTTGGCTAATTCTTCGCGTACcgc                                                                 <  2:830270/151‑1 (MQ=255)
                                                                                  tCCATCGCATGACCAATGCTCATGTCGGAGATAGCAGGCAGCGGCGTATTCTCGACATACACGTGACGCGCTTCCCGACGCAGACGCGTCCCTTCGCAGCTGGCGCACGGACGATTACTGATAAACTTGGCTAATTCTTCGCGTACCgcgc                                                               >  2:339687/1‑151 (MQ=255)
                                                                                   ccATCGCATGACCAATGCTCATGTCGGAGATAGCAGGCAGCGGCGTATTCTCGACATACACGTGACGCGCTTCCCGACGCAGACGCGTCCCTTCGCAGCTGGCGCACGGACGATTACTGATAAACTTGGCTAATTCTTCGCGTACCGCGCt                                                              >  2:1076755/1‑151 (MQ=255)
                                                                                   ccATCGCATGACCAATGCTCATGTCGGAGATAGCAGGCAGCGGCGTATTCTCGACATACACGTGACGCGCTTCCCGACGCAGACGCGTCCCTTCGCAGCTGGCGCACGGACGATTACTGATAAACTTGGCTAATTCTTCGCGTACCGCGCt                                                              <  1:1525621/151‑1 (MQ=255)
                                                                                     aTCGCATGACCAATGCTCATGTCGGAGATAGCAGGCAGCGGCGTATTCTCGACATACACGTGACGCGCTTCCCGACGCAGACGCGTCCCTTCGCAGCTGGCGCACGGACGATTACTGATAAACTTGGCTAATTCTTCGCGTACCGCGCTgg                                                            >  1:323648/1‑151 (MQ=255)
                                                                                      tCGCATGACCAATGCTCATGTCGGAGATAGCAGGCAGCGGCGTATTCTCGACATACACGTGACGCGCTTCCCGACGCAGACGCGTCCCTTCGCAGCTGGCGCACGGACGATTACTGATAAACTTGGCTAATTCTTCGCGTACCGCGCTgg                                                            >  2:1689380/1‑150 (MQ=255)
                                                                                       cGCATGACCAATGCTCATGTCGGAGATAGCAGGCAGCGGCGTATTCTCGACATACACGTGACGCGCTTCCCGACGCAGACGCGTCCCTTCGCAGCTGGCGCACGGACGATTACTGATAAACTTGGCTAATTCTTCGCGTACCGCGCTGGa                                                           <  2:487976/150‑1 (MQ=255)
                                                                                       cGCATGACCAATGCTCATGTCGGAGATAGCAGGCAGCGGCGTATTCTCGACATACACGTGACGCGCTTCCCGACGCAGACGCGTCCCTTCGCAGCTGGCGCACGGACGATTACTGATAAACTTGGCTAATTCTTCGCGTACCGCGCTGGAt                                                          <  1:1372756/151‑1 (MQ=255)
                                                                                         cATGACCAATGCTCATGTCGGAGATAGCAGGCAGCGGCGTATTCTCGACATACACGTGACGCGCTTCCCGACGCAGACGCGTCCCTTCGCAGCTGGCGCACGGACGATTACTGATAAACTTGGCTAATTCTTCGCGTACCGCGCTGGATTc                                                        >  1:1353991/1‑151 (MQ=255)
                                                                                            gACCAATGCTCATGTCGGAGATAGCAGGCAGCGGCGTATTCTCGACATACACGTGACGCGCTTCCCGACGCAGACGCGTCCCTTCGCAGCTGGCGCACGGACGATTACTGATAAACTTGGCTAATTCTTCGCGTACCGCGCTGGATTCCg                                                      <  2:459786/150‑1 (MQ=255)
                                                                                                aaTGCTCATGTCGGAGATAGCAGGCAGCGGCGTATTCTCGACATACACGTGACGCGCTTCCCGACGCAGACGCGTCCCTTCGCAGCTGGCGCACGGACGATTACTGATAAACTTGGCTAATTCTTCGCGTACCGCGCTGGATTCCGTctct                                                 <  2:311378/151‑1 (MQ=255)
                                                                                                aaTGCTCATGTCGGAGATAGCAGGCAGCGGCGTATTCTCGACATACACGTGACGCGCTTCCCGACGCAGACGCGTCCCTTCGCAGCTGGCGCACGGACGATTACTGATAAACTTGGCTAATTCTTCGCGTACCGCGCTGGATTCCGTctct                                                 <  1:1184090/151‑1 (MQ=255)
                                                                                                  tGCTCATGTCGGAGATAGCAGGCAGCGGCGTATTCTCGACATACACGTGACGCGCTTCCCGACGCAGACGCGTCCCTTCGCAGCTGGCGCACGGACGATTACTGATAAACTTGGCTAATTCTTCGCGTACCGCGCTGGATTCCGTCTCttt                                               >  1:675526/1‑151 (MQ=255)
                                                                                                      cATGTCGGAGATAGCAGGCAGCGGCGTATTCTCGACATACACGTGGCGCGCTTCCCGACGCAGACGCGTCCCTTCGCAGCTGGCGCACGGACGATTACTGATAAACTTGGCTAATTCTTCGCGTACCGCGCTGGATTCCGTCTCTTtat                                             <  2:891801/149‑1 (MQ=255)
                                                                                                      cATGTCGGAGATAGCAGGCAGCGGCGTATTCTCGACATACACGTGACGCGCTTCCCGACGCAGACGCGTCCCTTCGCAGCTGGCGCACGGACGATTACTGATAAACTTGGCTAATTCTTCGCGTACCGCGCTGGATTCCGTCTCTTtata                                            <  2:660496/150‑1 (MQ=255)
                                                                                                        tGTCGGAGATAGCAGGCAGCGGCGTATTCTCGACATACACGTGACGCGCTTCCCGACGCAGACGCGTCCCTTCGCAGCTGGCGCACGGACGATTACTGATAAACTTGGCTAATTCTTCGCGTACCGCGCTGGATTCCGTCTCTTTATAgcg                                         >  1:349262/1‑151 (MQ=255)
                                                                                                        tGTCGGAGATAGCAGGCAGCGGCGTATTCTCGACATACACGTGACGCGCTTCCCGACGCAGACGCGTCCCTTCGCAGCTGGCGCACGGACGATTACTGATAAACTTGGCTAATTCTTCGCGTACCGCGCTGGATTCCGTCTCTTTATAgc                                          >  2:1306801/1‑150 (MQ=255)
                                                                                                         gTCGGAGATAGCAGGCAGCGGCGTATTCTCGACATACACGTGACGCGCTTCCCGACGCAGACGCGTCCCTTCGCAGCTGGCGCACGGACGATTACTGATAAACTTGGCTAATTCTTCGCGTACCGCGCTGGATTCCGTCTCTTTATAgcgg                                        <  1:1646156/151‑1 (MQ=255)
                                                                                                           cGGAGATAGCAGGCAGCGGCGTATTCTCGACATACACGTGACGCGCTTCCCGACGCAGACGCGTCCCTTCGCAGCTGGCGCACGGACGATTACTGATAAACTTGGCTAATTCTTCGCGTACCGCGCTGGATTCCGTCTCTTTATAgcggcg                                      >  1:1687158/1‑151 (MQ=255)
                                                                                                              agaTAGCAGGCAGCGGCGTATTCTCGACATACACGTGACGCGCTTCCCGACGCAGACGCGTCCCTTCGCAGCTGGCGCACGGACGATTACTGATAAACTTGGCTAATTCTTCGCGTACCGCGCTGGATTCCGTCTCTTTATAGCGGCGCTc                                   <  2:1706062/151‑1 (MQ=255)
                                                                                                              agaTAGCAGGCAGCGGCGTATTCTCGACATACACGTGACGCGCTTCCCGACGCAGACGCGTCCCTTCGCAGCTGGCGCACGGACGATTACTGATAAACTTGGCTAATTCTTCGCGTACCGCGCTGGATTCCGTCTCTTTATAGCGGCGCTc                                   >  1:1613487/1‑151 (MQ=255)
                                                                                                                  aGCAGGCAGCGGCGTATTCTCGACATACACGTGACGCGCTTCCCGACGCAGACGCGTCCCTTCGCAGCTGGCGCACGGACGATTACTGATAAACTTGGCTAATTCTTCGCGTACCGCGCTGGATTCCGTCTCTTTATAGCGGCGCTCCat                                <  1:921590/150‑1 (MQ=255)
                                                                                                                     aggcagCGGCGTATTCTCGACATACACGTGACGCGCTTCCCGACGCAGACGCGTCCCTTCGCAGCTGGCGCACGGACGATTACTGATAAACTTGGCTAATTCTTCGCGTACCGCGCTGGATTCCGTCTCTTTATAGCGGCGCTCCAtatt                             >  1:6941/1‑150 (MQ=255)
                                                                                                                       gcagCGGCGTATTCTCGACATACACGTGACGCGCTTCCCGACGCAGACGCGTCCCTTCGCAGCTGGCGCACGGACGATTACTGATAAACTTGGCTAATTCTTCGCGTACCGCGCTGGATTCCGTCTCTTTATAGCGGCGCTCCATATTATg                          >  2:735832/1‑151 (MQ=255)
                                                                                                                        cagCGGCGTATTCTCGACATACACGTGACGCGCTTCCCGACGCAGACGCGTCCCTTCGCAGCTGGCGCACGGACGATTACTGATAAACTTGGCTAATTCTTCGCGTACCGCGCTGGATTCCGTCTCTTTATAGCGGCGCTCCATATTATgc                         >  1:378219/1‑151 (MQ=255)
                                                                                                                         agCGGCGTATTCTCGACATACACGTGACGCGCTTCCCGACGCAGACGCGTCCCTTCGCAGCTGGCGCACGGACGATTACTGATAAACTTGGCTAATTCTTCGCGTACCGCGCTGGATTCCGTCTCTTTATAGCGGCGCTCCATATTATgca                        <  2:1412113/151‑1 (MQ=255)
                                                                                                                         agCGGCGTATTCTCGACATACACGTGACGCGCTTCCCGACGCAGACGCGTCCCTTCGCAGCTGGCGCACGGACGATTACTGATAAACTTGGCTAATTCTTCGCGTACCGCGCTGGATTCCGTCTCTTTATAGCGGCGCTCCATATTATgca                        <  1:1486196/151‑1 (MQ=255)
                                                                                                                         agCGGCGTATTCTCGACATACACGTGACGCGCTTCCCGACGCAGACGCGTCCCTTCGCAGCTGGCGCACGGACGATTACTGATAAACTTGGCTAATTCTTCGCGTACCGCGCTGGATTCCGTCTCTTTATAGCGGCGCTCCATATTATgc                         >  1:917626/1‑150 (MQ=255)
                                                                                                                           cggcgTATTCTCGACATACACGTGACGCGCTTCCCGACGCAGACGCGTCCCTTCGCAGCTGGCGCACGGACGATTACTGATAAACTTGGCTAATTCTTCGCGTACCGCGCTGGATTCCGTCTCTTTATAGCGGCGCTCCATATTATgcagc                      >  1:1029071/1‑151 (MQ=255)
                                                                                                                           cggcgTATTCTCGACATACACGTGACGCGCTTCCCGACGCAGACGCGTCCCTTCGCAGCTGGCGCACGGACGATTACTGATAAACTTGGCTAATTCTTCGCGTACCGCGCTGGATTCCGTCTCTTTATAGCGGCGCTCCATATTATgcagc                      >  1:67107/1‑151 (MQ=255)
                                                                                                                              cgTATTCTCGACATACACGTGACGCGCTTCCCGACGCAGACGCGTCCCTTCGCAGCTGGCGCACGGACGATTACTGATAAACTTGGCTAATTCTTCGCGTACCGCGCTGGATTCCGTCTCTTTATAGCGGCGCTCCATATTATGCAGCACg                   >  1:1437094/1‑151 (MQ=255)
                                                                                                                                 aTTCTCGACATACACGTGACGCGCTTCCCGACGCAGACGCGTCCCTTCGCAGCTGGCGCACGGACGATTACTGATAAACTTGGCTAATTCTTCGCGTACCGCGCTGGATTCCGTCTCTTTATAGCGGCGCTCCATATTATGCAGCACGCCt                >  1:379773/1‑151 (MQ=255)
                                                                                                                                  ttCTCGACATACACGTGACGCGCTTCCCGACGCAGACGCGTCCCTTCGCAGCTGGCGCACGGACGATTACTGATAAACTTGGCTAATTCTTCGCGTACCGCGCTGGATTCCGTCTCTTTATAGCGGCGCTCCATATTATGCAGCACGCCt                <  2:1078893/150‑1 (MQ=255)
                                                                                                                                        aCATACACGTGACGCGCTTCCCGACGCAGACGCGTCCCTTCGCAGCTGGCGCACGGACGATTACTGATAAACTTGGCTAATTCTTCGCGTACCGCGCTGGATTCCGTCTCTTTATAGCGGCGCTCCATATTATGCAGCACGCCTTCGAACg         >  1:1181548/1‑151 (MQ=255)
                                                                                                                                         cATACACGTGACGCGCTTCCCGACGCAGACGCGTCCCTTCGCAGCTGGCGCACGGACGATTCCTGATAAACTTGGCTAATTCTTCGCGAACCGCGCTGGATTCCGTCTCTTTATAGCGGCGCTCCATATTATGCAGCACGCCTTCGAACgg        >  2:463951/1‑151 (MQ=255)
                                                                                                                                         cATACACGTGACGCGCTTCCCGACGCAGACGCGTCCCTTCGCAGCTGGCGCACGGACGATTACTGATAAACTTGGCTAATTCTTCGCGTACCGCGCTGGATTCCGTCTCTTTATAGCGGCGCTCCATATTATGCAGCACGCCTTCGAACgg        >  2:841069/1‑151 (MQ=255)
                                                                                                                                            acacGTGACGCGCTTCCCGACGCAGACGCGTCCCTTCGCAGCTGGCGCACGGACGATTACTGATAAACTTGGCTAATTCTTCGCGTACCGCGCTGGATTCCGTCTCTTTATAGCGGCGCTCCATATTATGCAGCACGCCTTCGAACGGAt      <  1:909112/150‑1 (MQ=255)
                                                                                                                                            acacGTGACGCGCTTCCCGACGCAGACGCGTCCCTTCGCAGCTGGCGCACGGACGATTACTGATAAACTTGGCTAATTCTTCGCGTACCGCGCTGGATTCCGTCTCTTTATAGCGGCGCTCCATATTATGCAGCACGCCTTCGAACGGAt      <  1:601927/150‑1 (MQ=255)
                                                                                                                                             cacGTGACGCGCTTCCCGACGCAGACGCGTCCCTTCGCAGCTGGCGCACGGACGATTACTGATAAACTTGGCTAATTCTTCGCGTACCGCGCTGGATTCCGTCTCTTTATAGCGGCGCTCCATATTATGCAGCACGCCTTCGAACGGATg     >  2:1193323/1‑150 (MQ=255)
                                                                                                                                               cGTGACGCGCTTCCCGACGCAGACGCGTCCCTTCGCAGCTGGCGCACGGACGATTACTGATAAACTTGGCTAATTCTTCGCGTACCGCGCTGGATTCCGTCTCTTTATAGCGGCGCTCCATATTATGCAGCACGCCTTCGAACGGATgacg  >  2:1583496/1‑151 (MQ=255)
                                                                                                                                                   |                                                                                                                                                  
TTTCAGACGATCGCCGATCTCTTTAAGGATTTTTTCTGCAATCTTCGCCCGCTGACCTGCGAGTTTGAGATTGTTGAAGAATTCCATCGCATGACCAATGCTCATGTCGGAGATAGCAGGCAGCGGCGTATTCTCGACATACACGTGGCGCGCTTCCCGACGCAGACGCGTCCCTTCGCAGCTGGCGCACGGACGATTACTGATAAACTTGGCTAATTCTTCGCGTACCGCGCTGGATTCCGTCTCTTTATAGCGGCGCTCCATATTATGCAGCACGCCTTCGAACGGATGACG  >  NC_000913/4272468‑4272761

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A