Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A5 F50 I1 R1 141 76.7 2402765 98.4% 2364320 150.1

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,125,906 G→A W115* (TGG→TGA)  rimJ → ribosomal‑protein‑S5‑alanine N‑acetyltransferase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,125,9060GA100.0% 284.9 / NA 71W115* (TGG→TGA) rimJribosomal‑protein‑S5‑alanine N‑acetyltransferase
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (29/42);  total (29/42)

CGAATTTCATAAACAAGGTTCAGCTTTCTACTTTGGCTTATTCGACCCGGACGAAAAAGAGATTATTGGCGTTGCCAATTTTTCCAATGTTGTTCGTGGCTCTTTTCATGCCTGCTATCTCGGTTATTCGATTGGGCAAAAATGGCAGGGCAAAGGACTCATGTTTGAAGCCCTGACCGCAGCCATTCGTTATATGCAGCGCACCCAACATATTCATCGCATTATGGCTAATTATATGCCGCACAATAAACGCAGCGGTGATTTACTGGCGCGACTGGGTTTTGAAAAAGAA  >  NC_000913/1125762‑1126053
                                                                                                                                                |                                                                                                                                                   
cGAATTTCATAAACAAGGTTCAGCTTTCTACTTTGGCTTATTCGACCCGGACGAAAAAGAGATTATTGGCGTTGCCAATTTTTCCAATGTTGTTCGTGGCTCTTTTCATGCCTGCTATCTCGGTTATTCGATTGGGCAAAAATGACAGGGc                                                                                                                                               >  2:580796/1‑151 (MQ=255)
   aTTTCATAAACAAGGTTCAGCTTTCTACTTTGGCTTATTCGACCCGGACGAAAAAGAGATTATTGGCGTTGCCAATTTTTCCAATGTTGTTCGTGGCTCTTTTCATGCCTGCTATCTCGGTTATTCGATTGGGCAAAAATGACAGGGCaaa                                                                                                                                            <  2:432844/151‑1 (MQ=255)
   aTTTCATAAACAAGGTTCAGCTTTCTACTTTGGCTTATTCGACCCGGACGAAAAAGAGATTATTGGCGTTGCCAATTTTTCCAATGTTGTTCGTGGCTCTTTTCATGCCTGCTATCTCGGTTATTCGATTGGGCAAAAATGACAGGGCaaa                                                                                                                                            <  2:693730/151‑1 (MQ=255)
   aTTTCATAAACAAGGTTCAGCTTTCTACTTTGGCTTATTCGACCCGGACGAAAAAGAGATTATTGGCGTTGCCAATTTTTCCAATGTTGTTCGTGGCTCTTTTCATGCCTGCTATCTCGGTTATTCGATTGGGCAAAAATGACAGGGCaaa                                                                                                                                            <  1:856548/151‑1 (MQ=255)
         tAAACAAGGTTCAGCTTTCTACTTTGGCTTATTCGACCCGGACGAAAAAGAGATTATTGGCGTTGCCAATTTTTCCAATGTTGTTCGTGGCTCTTTTCATGCCTGCTATCTCGGTTATTCGATTGGGCAAAAATGACAGGGCAAAGGACTc                                                                                                                                      >  2:1151620/1‑151 (MQ=255)
          aaaCAAGGTTCAGCTTTCTACTTTGGCTTATTCGACCCGGACGAAAAAGAGATTATTGGCGTTGCCAATTTTTCCAATGTTGTTCGTGGCTCTTTTCATGCCTGCTATCTCGGTTATTCGATTGGGCAAAAATGACAGGGCAAAGGACTc                                                                                                                                      >  1:6442/1‑150 (MQ=255)
                 gTTCAGCTTTCTACTTTGGCTTATTCGACCCGGACGAAAAAGAGATTATTGGCGTTGCCAATTTTTCCAATGTTGTTCGTGGCTCTTTTCATGCCTGCTATCTCGGTTATTCGATTGGGCAAAAATGACAGGGCAAAGGACTCATGTTTGa                                                                                                                              <  2:421458/151‑1 (MQ=255)
                          tCTACTTTGGCTTATTCGACCCGGACGAAAAAGAGATTATTGGCGTTGCCAATTTTTCCAATGTTGTTCGTGGCTCTTTTCATGCCTGCTATCTCGGTTATTCGATTGGGCAAAAATGACAGGGCAAAGGACTCATGTTTGAAGCCCTg                                                                                                                       <  2:842521/149‑1 (MQ=255)
                                ttGGCTTATTCGACCCGGACGAAAAAGAGATTATTGGCGTTGCCAATTTTTCCAATGTTGTTCGTGGCTCTTTTCATGCCTGCTATCTCGGTTATTCGATTGGGCAAAAATGACAGGGCAAAGGACTCATGTTTGAAGCCCTGACCGCa                                                                                                                 <  2:709117/149‑1 (MQ=255)
                                 tGGCTTATTCGACCCGGACGAAAAAGAGATTATTGGCGTTGCCAATTTTTCCAATGTTGTTCGTGGCTCTTTTCATGCCTGCTATCTCGGTTATTCGATTGGGCAAAAATGACAGGGCAAAGGACTCATGTTTGAAGCCCTGACCGCAGcc                                                                                                              >  1:68503/1‑151 (MQ=255)
                                   gCTTATTCGACCCGGACGAAAAAGAGATTATTGGCGTTGCCAATTTTTCCAATGTTGTTCGTGGCTCTTTTCATGCCTGCTATCTCGGTTATTCGATTGGGCAAAAATGACAGGGCAAAGGACTCATGTTTGAAGCCCTGACCGCAGCCAt                                                                                                            >  2:623622/1‑151 (MQ=255)
                                      tATTCGACCCGGACGAAAAAGAGATTATTGGCGTTGCCAATTTTTCCAATGTTGTTCGTGGCTCTTTTCATGCCTGCTATCTCGGTTATTCGATTGGGCAAAAATGACAGGGCAAAGGACTCATGTTTGAAGCCCTGACCGCAGCCATTCg                                                                                                         >  1:551927/1‑151 (MQ=255)
                                       aTTCGACCCGGACGAAAAAGAGATTATTGGCGTTGCCAATTTTTCCAATGTTGTTCGTGGCTCTTTTCATGCCTGCTATCTCGGTTATTCGATTGGGCAAAAATGACAGGGCAAAGGACTCATGTTTGAAGCCCTGACCGCAGCCATTCGt                                                                                                        >  2:75448/1‑151 (MQ=255)
                                          cGACCCGGACGAAAAAGAGATTATTGGCGTTGCCAATTTTTCCAATGTTGTTCGTGGCTCTTTTCATGCCTGCTATCTCGGTTATTCGATTGGGCAAAAATGACAGGGCAAAGGACTCATGTTTGAAGCCCTGACCGCAGCCATTCGTtat                                                                                                     <  1:91738/151‑1 (MQ=255)
                                                 gACGAAAAAGAGATTATTGGCGTTGCCAATTTTTCCAATGTTGTTCGTGGCTCTTTTCATGCCTGCTATCTCGGTTATTCGATTGGGCAAAAATGACAGGGCAAAGGACTCATGTTTGAAGCCCTGACCGCAGCCATTCGTTATATGCAgc                                                                                              <  1:981139/151‑1 (MQ=255)
                                                 gACGAAAAAGAGATTATTGGCGTTGCCAATTTTTCCAATGTTGTTCGTGGCTCTTTTCATGCCTGCTATCTCGGTTATTCGATTGGGCAAAAATGACAGGGCAAAGGACTCATGTTTGAAGCCCTGACCGCAGCCATTCGTTATATGCAgc                                                                                              <  2:578774/151‑1 (MQ=255)
                                                        aaGAGATTATTGGCGTTGCCAATTTTTCCAATGTTGTTCGTGGCTCTTTTCATGCCTGCTATCTCGGTTATTCGATTGGGCAAAAATGACAGGGCAAAGGACTCATGTTTGAAGCCCTGACCGCAGCCATTCGTTATATGCAGCGCACCCa                                                                                       <  2:996111/151‑1 (MQ=255)
                                                         agagATTATTGGCGTTGCCAATTTTTCCAATGTTGTTCGTGGCTCTTTTCATGCCTGCTATCTCGGTTATTCGATTGGGCAAAAATGACAGGGCAAAGGACTCATGTTTGAAGCCCTGACCGCAGCCATTCGTTATATGCAGCGCACCCaa                                                                                      <  1:160236/151‑1 (MQ=255)
                                                         agagATTATTGGCGTTGCCAATTTTTCCAATGTTGTTCGTGGCTCTTTTCATGCCTGCTATCTCGGTTATTCGATTGGGCAAAAATGACAGGGCAAAGGACTCATGTTTGAAGCCCTGACCGCAGCCATTCGTTATATGCAGCGCACCCa                                                                                       >  1:785193/1‑150 (MQ=255)
                                                         agagATTATTGGCGTTGCCAATTTTTCCAATGTTGTTCGTGGCTCTTTTCATGCCTGCTATCTCGGTTATTCGATTGGGCAAAAATGACAGGGCAAAGGACTCATGTTTGAAGCCCTGACCGCAGCCATTCGTTATATGCAGCGCACCCa                                                                                       >  1:44378/1‑150 (MQ=255)
                                                          gagaTTATTGGCGTTGCCAATTTTTCCAATGTTGTTCGTGGCTCTTTTCATGCCTGCTATCTCGGTTATTCGATTGGGCAAAAATGACAGGGCAAAGGACTCATGTTTGAAGCCCTGACCGCAGCCATTCGTTATATGCAGCGCACCCAAc                                                                                     >  2:398568/1‑151 (MQ=255)
                                                          gagaTTATTGGCGTTGCCAATTTTTCCAATGTTGTTCGTGGCTCTTTTCATGCCTGCTATCTCGGTTATTCGATTGGGCAAAAATGACAGGGCAAAGGACTCATGTTTGAAGCCCTGACCGCAGCCATTCGTTATATGCAGCGCACCCAAc                                                                                     <  2:244106/151‑1 (MQ=255)
                                                             attattGGCGTTGCCAATTTTTCCAATGTTGTTCGTGGCTCTTTTCATGCCTGCTATCTCGGTTATTCGATTGGGCAAAAATGACAGGGCAAAGGACTCATGTTTGAAGCCCTGACCGCAGCCATTCGTTATATGCAGCGCACCCAACat                                                                                   >  2:796490/1‑150 (MQ=255)
                                                                  tGGCGTTGCCAATTTTTCCAATGTTGTTCGTGGCTCTTTTCATGCCTGCTATCTCGGTTATTCGATTGGACAAAAATGACAGGGCAAAGGACTCATGTTTGAAGCCCTGACCGCAGCCATTCGTTATATGCAGCGCACCCAACATATTCa                                                                              <  2:581602/150‑1 (MQ=255)
                                                                   ggCGTTGCCAATTTTTCCAATGTTGTTCGTGGCTCTTTTCATGCCTGCTATCTCGGTTATTCGATTGGGCAAAAATGACAGGGCAAAGGACTCATGTTTGAAGCCCTGACCGCAGCCATTCGTTATATGCAGCGCACCCAACATATTCATc                                                                            >  2:746594/1‑151 (MQ=255)
                                                                        tGCCAATTTTTCCAATGTTGTTCGTGGCTCTTTTCATGCCTGCTATCTCGGTTATTCGATTGGGCAAAAATGACAGGGCAAAGGACTCATGTTTGAAGCCCTGACCGCAGCCATTCGTTATATGCAGCGCACCCAACATATTCATCGCAt                                                                        <  2:1132708/150‑1 (MQ=255)
                                                                             aTTTTTCCAATGTTGTTCGTGGCTCTTTTCATGCCTGCTATCTCGGTTATTCGATTGGGCAAAAATGACAGGGCAAAGGACTCATGTTTGAAGCCCTGACCGCAGCCATTCGTTATATGCAGCGCACCCAACATATTCATCGCATTATGGc                                                                  <  2:652475/151‑1 (MQ=255)
                                                                              tttttCCAATGTTGTTCGTGGCTCTTTTCATGCCTGCTATCTCGGTTATTCGATTGGGCAAAAATGACAGGGCAAAGGACTCATGTTTGAAGCCCTGACCGCAGCCATTCGTTATATGCAGCGCACCCAACATATTCATCGCATTATGGCt                                                                 >  2:96605/1‑151 (MQ=255)
                                                                               ttttCCAATGTTGTTCGTGGCTCTTTTCATGCCTGCTATCTCGGTTATTCGATTGGGCAAAAATGACAGGGCAAAGGACTCATGTTTGAAGCCCTGACCGCAGCCATTCGTTATATGCAGCGCACCCAACATATTCATCGCATTATGGCt                                                                 <  2:1123172/150‑1 (MQ=255)
                                                                                tttCCAATGTTGTTCGTGGCTCTTTTCATGCCTGCTATCTCGGTTATTCGATTGGGCAAAAATGACAGGGCAAAGGACTCATGTTTGAAGCCCTGACCGCAGCCATTCGTTATATGCAGCGCACCCAACATATTCATCGCATTATGGCTa                                                                >  2:147019/1‑150 (MQ=255)
                                                                                tttCCAATGTTGTTCGTGGCTCTTTTCATGCCTGCTATCTCGGTTATTCGATTGGGCAAAAATGACAGGGCAAAGGACTCATGTTTGAAGCCCTGACCGCAGCCATTCGTTATATGCAGCGCACCCAACATATTCATCGCATTATGGCTa                                                                <  1:7917/150‑1 (MQ=255)
                                                                                 ttCCAATGTTGTTCGTGGCTCTTTTCATGCCTGCTATCTCGGTTATTCGATTGGGCAAAAATGACAGGGCAAAGGACTCATGTTTGAAGCCCTGACCGCAGCCATTCGTTATATGCAGCGCACCCAACATATTCATCGCATTATGGCTAAt                                                              >  2:632594/1‑151 (MQ=255)
                                                                                   ccAATGTTGTTCGTGGCTCTTTTCATGCCTGCTATCTCGGTTATTCGATTGGGCAAAAATGACAGGGCAAAGGACTCATGTTTGAAGCCCTGACCGCAGCCATTCGTTATATGCAGCGCACCCAACATATTCATCGCATTATGGCTAATta                                                            <  1:656128/151‑1 (MQ=255)
                                                                                    cAATGTTGTTCGTGGCTCTTTTCATGCCTGCTATCTCGGTTATTCGATTGGGCAAAAATGACAGGGCAAAGGACTCATGTTTGAAGCCCTGACCGCAGCCATTCGTTATATGCAGCGCACCCAACATATTCATCGCATTATGGCTAATtat                                                           <  1:215700/151‑1 (MQ=255)
                                                                                     aaTGTTGTTCGTGGCTCTTTTCATGCCTGCTATCTCGGTTATTCGATTGGGCAAAAATGACAGGGCAAAGGACTCATGTTTGAAGCCCTGACCGCAGCCATTCGTTATATGCAGCGCACCCAACATATTCATCGCATTATGGCTAATtata                                                          <  1:128107/151‑1 (MQ=255)
                                                                                      aTGTTGTTCGTGGCTCTTTTCATGCCTGCTATCTCGGTTATTCGATTGGGCAAAAATGACAGGGCAAAGGACTCATGTTTGAAGCCCTGACCGCAGCCATTCGTTATATGCAGCGCACCCAACATATTCATCGCATTATGGCTAATTatat                                                         >  2:912322/1‑151 (MQ=255)
                                                                                      aTGTTGTTCGTGGCTCTTTTCATGCCTGCTATCTCGGTTATTCGATTGGGCAAAAATGACAGGGCAAAGGACTCATGTTTGAAGCCCTGACCGCAGCCATTCGTTATATGCAGCGCACCCAACATATTCATCGCATTATGGCTAATTatat                                                         <  1:173349/151‑1 (MQ=255)
                                                                                              cGTGGCTCTTTTCATGCCTGCTATCTCGGTTATTCGATTGGGCAAAAATGACAGGGCAAAGGACTCATGTTTGAAGCCCTGACCGCAGCCATTCGTTATATGCAGCGCACCCAACATATTCATCGCATTATGGCTAATTATATGCCGcac                                                  <  2:1184034/150‑1 (MQ=255)
                                                                                              cGTGGCTCTTTTCATGCCTGCTATCTCGGTTATTCGATTGGGCAAAAATGACAGGGCAAAGGACTCATGTTTGAAGCCCTGACCGCAGCCATTCGTTATATGCAGCGCACCCAACATATTCATCGCATTATGGCTAATTATATGCCGcac                                                  <  2:285882/150‑1 (MQ=255)
                                                                                              cGTGGCTCTTTTCATGCCTGCTATCTCGGTTATTCGATTGGGCAAAAATGACAGGGCAAAGGACTCATGTTTGAAGCCCTGACCGCAGCCATTCGTTATATGCAGCGCACCCAACATATTCATCGCATTATGGCTAATTATATGCCGcac                                                  <  1:363738/150‑1 (MQ=255)
                                                                                                tGGCTCTTTTCATGCCTGCTATCTCGGTTATTCGATTGGGCAAAAATAACAGGGCAAAGGACTCATGTTTGAAGCCCTGACCGCAGCCATTCGTTATATGCAGCGCACCCAACATATTCATCGCATTATGGCTAATTATATGCCGCACAAt                                               >  2:825330/1‑151 (MQ=255)
                                                                                                  gCTCTTTTCATGCCTGCTATCTCGGTTATTCGATTGGGCAAAAATGACAGGGCAAAGGACTCATGTTTGAAGCCCTGACCGCAGCCATTCGTTATATGCAGCGCACCCAACATATTCATCGCATTATGGCTAATTATATGCCGCACAATaa                                             <  2:652464/151‑1 (MQ=255)
                                                                                                  gCTCTTTTCATGCCTGCTATCTCGGTTATTCGATTGGGCAAAAATGACAGGGCAAAGGACTCATGTTTGAAGCCCTGACCGCAGCCATTCGTTATATGCAGCGCACCCAACATATTCATCGCATTATGGCTAATTATATGCCGCACAATa                                              >  2:814474/1‑150 (MQ=255)
                                                                                                      ttttCATGCCTGCTATCTCGGTTATTCGATTGGGCAAAAATGACAGGGCAAAGGACTCATGTTTGAAGCCCTGACCGCAGCCATTCGTTATATGCAGCGCACCCAACATATTCATCGCATTATGGCTAATTATATGCCGCACAATAAACGc                                         >  2:234410/1‑151 (MQ=255)
                                                                                                       tttCATGCCTGCTATCTCGGTTATTCGATTGGGCAAAAATGACAGGGCAAAGGACTCATGTTTGAAGCCCTGACCGCAGCCATTCGTTATATGCAGCGCACCCAACATATTCATCGCATTATGGCTAATTATATGCCGCACAATAAAc                                           <  2:936728/148‑1 (MQ=255)
                                                                                                       tttCATGCCTGCTATCTCGGTTATTCGATTGGGCAAAAATGACAGGGCAAAGGACTCATGTTTGAAGCCCTGACCGCAGCCATTCGTTATATGCAGCGCACCCAACATATTCATCGCATTATGGCTAATTATATGCCGCACAATAAACGc                                         >  1:919996/1‑150 (MQ=255)
                                                                                                        ttCATGCCTGCTATCTCGGTTATTCGATTGGGCAAAAATGACAGGGCAAAGGACTCATGTTTGAAGCCCTGACCGCAGCCATTCGTTATATGCAGCGCACCCAACATATTCATCGCATTATGGCTAATTATATGCCGCACAATAAACGc                                         >  1:252449/1‑149 (MQ=255)
                                                                                                        ttCATGCCTGCTATCTCGGTTATTCGATTGGGCAAAAATGACAGGGCAAAGGACTCATGTTTGAAGCCCTGACCGCAGCCATTCGTTATATGCAGCGCACCCAACATATTCATCGCATTATGGCTAATTATATGCCGCACAATAAACGCa                                        <  2:980163/150‑1 (MQ=255)
                                                                                                         tCATGCCTGCTATCTCGGTTATTCGATTGGGCAAAAATGACAGGGCAAAGGACTCATGTTTGAAGCCCTGACCGCAGCCATTCGTTATATGCAGCGCACCCAACATATTCATCGCATTATGGCTAATTATATGCCGCACAATAAACGCAg                                       <  2:862646/150‑1 (MQ=255)
                                                                                                          cATGCCTGCTATCTCGGTTATTCGATTGGGCAAAAATGACAGGGCAAAGGACTCATGTTTGAAGCCCTGACCGCAGCCATTCGTTATATGCAGCGCACCCAACATATTCATCGCATTATGGCTAATTATATGCCGCACAATAAACGCAGc                                      <  2:368077/150‑1 (MQ=255)
                                                                                                          cATGCCTGCTATCTCGGTTATTCGATTGGGCAAAAATGACAGGGCAAAGGACTCATGTTTGAAGCCCTGACCGCAGCCATTCGTTATATGCAGCGCACCCAACATATTCATCGCATTATGGCTAATTATATGCCGCACAATAAACGCAGCg                                     >  1:251886/1‑151 (MQ=255)
                                                                                                           aTGCCTGCTATCTCGGTTATTCGATTGGGCAAAAATGACAGGGCAAAGGACTCATGTTTGAAGCCCTGACCGCAGCCATTCGTTATATGCAGCGCACCCAACATATTCATCGCATTATGGCTAATTATATGCCGCACAATAAACGCAGCgg                                    >  2:1130318/1‑151 (MQ=255)
                                                                                                             gCCTGCTATCTCGGTTATTCGATTGGGCAAAAATGACAGGGCAAAGGACTCATGTTTGAAGCCCTGACCGCAGCCATTCGTTATATGCAGCGCACCCAACATATTCATCGCATTATGGCTAATTATATGCCGCACAATAAACGCAGCGGTg                                  <  1:766955/151‑1 (MQ=255)
                                                                                                              ccTGCTATCTCGGTTATTCGATTGGGCAAAAATGACAGGGCCAAGGACTCATGTTTGAAGCCCTGACCGCAGACATACGTTATATGCAGCGCACCCAACATATTCATCGCATTATGGCAAATTAGATGCCGCACAATAAACGCAGCGGTg                                  >  2:1115407/1‑150 (MQ=255)
                                                                                                                     tctcGGTTATTCGATTGGGCAAAAATGACAGGGCAAAGGACTCATGTTTGAAGCCCTGACCGCAGCCATTCGTTATATGCAGCGCACCCAACATATTCATCGCATTATGGCTAATTATATGCCGCACAATAAACGCAGCGGTGATTTACTg                          >  1:469320/1‑151 (MQ=255)
                                                                                                                        cGGTTATTCGATTGGGCAAAAATGACAGGGCAAAGGACTCATGTTTGAAGCCCTGACCGCAGCCATTCGTTATATGCAGCGCACCCAACATATTCATCGCATTATGGCTAATTATATGCCGCACAATAAACGCAGCGGTGATTTACTGgc                        <  1:469558/150‑1 (MQ=255)
                                                                                                                         ggTTATTCGATTGGGCAAAAATGACAGGGCAAAGGACTCATGTTTGAAGCCCTGACCGCAGCCATTCGTTATATGCAGCGCACCCAACATATTCATCGCATTATGGCTAATTATATGCCGCACAATAAACGCAGCGGTGATTTACTGgcgc                      <  2:214943/151‑1 (MQ=255)
                                                                                                                         ggTTATTCGATTGGGCAAAAATGACAGGGCAAAGGACTCATGTTTGAAGCCCTGACCGCAGCCATTCGTTATATGCAGCGCACCCAACATATTCATCGCATTATGGCTAATTATATGCCGCACAATAAACGCAGCGGTGATTTACTGgcgc                      <  2:755603/151‑1 (MQ=255)
                                                                                                                          gTTATTCGATTGGGCAAAAATGACAGGGCAAAGGACTCATGTTTGAAGCCCTGACCGCAGCCATTCGTTATATGCAGCGCACCCAACATATTCATCGCATTATGGCTAATTATATGCCGCACAATAAACGCAGCGGTGATTTACTGGcgcg                     <  1:429089/151‑1 (MQ=255)
                                                                                                                            tATTCGATTGGGCAAAAATGACAGGGCAAAGGACTCATGTTTGAAGCCCTGACCGCAGCCATTCGTTATATGCAGCGCACCCAACATATTCATCGCATTATGGCTAATTATATGCCGCACAATAAACGCAGCGGTGATTTACTGGCGCGa                    <  2:44378/150‑1 (MQ=255)
                                                                                                                            tATTCGATTGGGCAAAAATGACAGGGCAAAGGACTCATGTTTGAAGCCCTGACCGCAGCCATTCGTTATATGCAGCGCACCCAACATATTCATCGCATTATGGCTAATTATATGCCGCACAATAAACGCAGCGGTGATTTACTGGCGCGAc                   >  1:836230/1‑151 (MQ=255)
                                                                                                                             aTTCGATTGGGCAAAAATGACAGGGCAAAGGACTCATGTTTGAAGCCCTGACCGCAGCCATTCGTTATATGCAGCGCACCCAACATATTCATCGCATTATGGCTAATTATATGCCGCACAATAAACGCAGCGGTGATTTACTGGCGCGAc                   <  2:50902/150‑1 (MQ=255)
                                                                                                                               tCGATTGGGCAAAAATGACAGGGCAAAGGACTCATGTTTGAAGCCCTGACCGCAGCCATTCGTTATATGCAGCGCACCCAACATATTCATCGCATTATGGCTAATTATATGCCGCACAATAAACGCAGCGGTGATTTACTGGCGCGACTg                 <  2:677655/150‑1 (MQ=255)
                                                                                                                                 gATTGGGCAAAAATGACAGGGCAAAGGACTCATGTTTGAAGCCCTGACCGCAGCCATTCGTTATATGCAGCGCACCCAACATATTCATCGCATTATGGCTAATTATATGCCGCACAATAAACGCAGCGGTGATTTACTGGCGCGACTGGGt              >  2:848534/1‑151 (MQ=255)
                                                                                                                                 gATTGGGCAAAAATGACAGGGCAAAGGACTCATGTTTGAAGCCCTGACCGCAGCCATTCGTTATATGCAGCGCACCCAACATATTCATCGCATTATGGCTAATTATATGCCGCACAATAAACGCAGCGGTGATTTACTGGCGCGACTGGGt              <  2:469323/151‑1 (MQ=255)
                                                                                                                                  aTTGGGCAAAAATGACAGGGCAAAGGACTCATGTTTGAAGCCCTGACCGCAGCCATTCGTTATATGCAGCGCACCCAACATATTCATCGCATTATGGCTAATTATATGCCGCACAATAAACGCAGCGGTGATTTACTGGCGCGACTGGGtt             <  2:808762/151‑1 (MQ=255)
                                                                                                                                    tGGGCAAAAATGACAGGGCAAAGGACTCATGTTTGAAGCCCTGACCGCAGCCATTCGTTATATGCAGCGCACCCAACATATTCATCGCATTATGGCTAATTATATGCCGCACAATAAACGCAGCGGTGATTTACTGGCGCGACTGGGttt            <  1:696050/150‑1 (MQ=255)
                                                                                                                                    tGGGCAAAAATGACAGGGCAAAGGACTCATGTTTGAAGCCCTGACCGCAGCCATTCGTTATATGCAGCGCACCCAACATATTCATCGCATTATGGCTAATTATATGCCGCACAATAAACGCAGCGGTGATTTACTGGCGCGACTGGGttt            <  2:1166743/150‑1 (MQ=255)
                                                                                                                                       gCAAAAATGACAGGGCAAAGGACTCATGTTTGAAGCCCTGACCGCAGCCATTCGTTATATGCAGCGCACCCAACATATTCATCGCATTATGGCTAATTATATGCCGCACAATAAACGCAGCGGTGATTTACTGGCGCGACTGGGTTTTGa         >  1:1053093/1‑150 (MQ=255)
                                                                                                                                         aaaaaTGACAGGGCAAAGGACTCATGTTTGAAGCCCTGACCGCAGCCATTCGTTATATGCAGCGCACCCAACATATTCATCGCATTATGGCTAATTATATGCCGCACAATAAACGCAGCGGTGATTTACTGGCGCGACTGGGTTTTGaaa       >  1:458521/1‑150 (MQ=255)
                                                                                                                                             aTGACAGGGCAAAGGACTCATGTTTGAAGCCCTGACCGCAGCCATTCGTTATATGCAGCGCACCCAACATATTCATCGCATTATGGCTAATTATATGCCGCACAATAAACGCAGCGGTGATTTACTGGCGCGACTGGGTTTTGAAAaagaa  <  2:1103519/151‑1 (MQ=255)
                                                                                                                                                |                                                                                                                                                   
CGAATTTCATAAACAAGGTTCAGCTTTCTACTTTGGCTTATTCGACCCGGACGAAAAAGAGATTATTGGCGTTGCCAATTTTTCCAATGTTGTTCGTGGCTCTTTTCATGCCTGCTATCTCGGTTATTCGATTGGGCAAAAATGGCAGGGCAAAGGACTCATGTTTGAAGCCCTGACCGCAGCCATTCGTTATATGCAGCGCACCCAACATATTCATCGCATTATGGCTAATTATATGCCGCACAATAAACGCAGCGGTGATTTACTGGCGCGACTGGGTTTTGAAAAAGAA  >  NC_000913/1125762‑1126053

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A