Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A5 F50 I1 R1	141	76.7	2402765	98.4%	2364320	150.1

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,377,215	A→G	L69P (CTG→CCG)	sspA ←	stringent starvation protein A, phage P1 late gene activator, RNAP‑associated acid‑resistance protein, inactive glutathione S‑transferase homolog

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,377,215	0	A	G	100.0%	219.7 / NA	60	L69P (CTG→CCG)	sspA	stringent starvation protein A, phage P1 late gene activator, RNAP‑associated acid‑resistance protein, inactive glutathione S‑transferase homolog
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (22/38); total (22/38)

TGATGGTGTTCATCAGCGTGTACCAGTCTTTTTCGATGCGATGCATGTACAGACGGCTTTCACCGCGAGCTACCGGGTAAACAGGCATCAGTGGCGGATGCGGGAAACGCTCATCCAGATATTCCATAATGATGCGAGATTCCCACAGGGTCAGCTCACGATCCACCAGGGTCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGAGGCGGATTGTCCTTTTCCACGTGTTCGATCTCGAAACTTACACCTTTCTCAGCCAGCACAATGCGGACCTGATGGCT  >  NC_000913/3377069‑3377357

tgatgGTGTTCATCAGCGTGTACCAGTCTTTTTCGATGCGATGCATGTACAGACGGCTTTCACCGCGAGCTACCGGGTAAACAGGCATCAGTGGCGGATGCGGGAAAAGCTCATCCAGATATTCCATAATGATGCGAGATTCCCACgggg                                                                                                                                             >  2:257361/1‑150 (MQ=255)

      tgtTCATCAGCGTGTACCAGTCTTTTTCGATGCGATGCATGTACAGACGGCTTTCACCGCGAGCTACCGGGTAAACAGGCATCAGTGGCGGATTCGGGAAACGCTCATCCAGATATTCCCTAATGATGCGAGATTCCCACGGGGTCAGCt                                                                                                                                       >  1:348951/1‑150 (MQ=255)

        ttCATCAGCGTGTACCAGTCTTTTTCGATGCGATGCATGTACAGACGGCTTTCACCGCGAGCTACCGGGTAAACAGGCATCAGTGGCGGATGCGGGAAACGCTCATCCAGATATTCCATAATGATGCGAGATTCCCACGGGGTCAGCTCAc                                                                                                                                    >  2:468827/1‑151 (MQ=255)

         tcatcaGCGTGTACCAGTCTTTTTCGATGCGATGCATGTACAGACGGCTTTCACCGCGAGCTACCGGGTAAACAGGCATCAGTGGCGGATGCGGGAAACGCTCATCCAGATATTCCATAATGATGCGAGATTCCCACGGGGTCAGCTCAc                                                                                                                                    <  1:236167/150‑1 (MQ=255)

         tcatcaGCGTGTACCAGTCTTTTTCGATGCGATGCATGTACAGACGGCTTTCACCGCGAGCTACCGGGTAAACAGGCATCAGTGGCGGATGCGGGAAACGCTCATCCAGATATTCCATAATGATGCGAGATTCCCACGGGGTCAGCTCAc                                                                                                                                    <  1:955981/150‑1 (MQ=255)

             caGCGTGTACCAGTCTTTTTCGATGCGATGCATGTACAGACGGCTTTCACCGCGAGCTACCGGGTAAACAGGCATCAGTGGCGGATGCGGGAAACGCTCATCCAGATATTCCATAATGATGCGAGATTCCCACGGGGTCAGCTCACGATcc                                                                                                                               <  1:821667/151‑1 (MQ=255)

              aGCGTGTACCAGTCTTTTTCGATGCGATGCATGTACAGACGGCTTTCACCGCGAGCTACCGGGTAAACAGGCATCAGTGGCGGATGCGGGAAACGCTCATCCAGATATTCCATAATGATGCGAGATTCCCACGGGGTCAGCTCACGATcca                                                                                                                              <  1:581123/151‑1 (MQ=255)

                    tACCAGTCTTTTTCGATGCGATGCATGTACAGACGGCTTTCACCGCGAGCTACCGGGTAAACAGGCATCAGTGGCGGATGCGGGAAACGCTCATCCAGATATTCCATAATGATGCGAGATTCCCACGGGGTCAGCTCACGATCCACCAggg                                                                                                                        >  2:194844/1‑151 (MQ=255)

                             ttttCGATGCGATGCATGTACAGACGGCTTTCACCGCGAGCTACCGGGTAAACAGGCATCAGTGGCGGATGCGGGAAACGCTCATCCAGATATTCCATAATGATGCGAGATTCCCACGGGGTCAGCTCACGATCCACCAGGGTCGGaa                                                                                                                  <  1:850765/148‑1 (MQ=255)

                              tttCGATGCGATGCATGTACAGACGGCTTTCACCGCGAGCTACCGGGTAAACAGGCATCAGTGGCGGATGCGGGAAACGCTCATCCAGATATTCCATAATGATGCGAGATTCCCACGGGGTCAGCTCACGATCCACCAGGGGCGGAACGc                                                                                                               >  2:339597/1‑150 (MQ=255)

                                tCGATGCGATGCATGTACAGACGGCTTTCACCGCGAGCTACCGGGTAAACAGGCATCAGTGGCGGATGCGGGAAACGCTCATCCAGATATTCCATAATGATGCGAGATTCCCACGGGGTCCGCCCACGATCCACCAGGGTCGGAACGct                                                                                                              >  2:6203/1‑149 (MQ=255)

                                tCGATGCGATGCATGTACAGACGGCTTTCACCGCGAGCTACCGGGTAAACAGGCATCAGTGGCGGATGCGGGAAACGCTCATCCAGATATTCCATAATGATGCGAGATTCCCACGGGGTCAGCTCACGATCCACCAGGGTCGGAACGctc                                                                                                             <  1:780912/150‑1 (MQ=255)

                                     gcgatgcATGTACAGACGGCTTTCACCGCGAGCTACCGGGTAAACAGGCATCAGTGGCGGATGCGGGAAACGCTCATCCAGATATTCCATAATGATGCGAGATTCCCACGGGGTCAGCTCACGATCCACCAGGGTCGGAACGCTCTGATTc                                                                                                       <  2:1193338/151‑1 (MQ=255)

                                     gcgatgcATGTACAGACGGCTTTCACCGCGAGCTACCGGGTAAACAGGCATCAGTGGCGGATGCGGGAAACGCTCATCCAGATATTCCATAATGATGCGAGATTCCCACGGGGTCAGCTCACGATCCACCAGGGTCGGAACGCTCTGATTc                                                                                                       <  1:292046/151‑1 (MQ=255)

                                       gatgcATGTACAGACGGCTTTCACCGCGAGCTACCGGGTAAACAGGCATCAGTGGCGGATGCGGGAAACGCTCATCCAGATATTCCATAATGATGCGAGATTCCCACGGGGTCAGCTCACGATCCACCAGGGTCGGAACGCTCTGATTCgg                                                                                                     <  2:458011/151‑1 (MQ=255)

                                          gcATGTACAGACGGCTTTCACCGCGAGCTACCGGGTAAACAGGCATCAGTGGCGGATGCGGGAAACGCTCATCCAGATATTCCATAATGATGCGAGATTCCCACGGGGTCAGCTCACGATCCACCAGGGTCGGAACGCTCTGATTCGGGtt                                                                                                  <  2:671828/151‑1 (MQ=255)

                                           cATGTACAGACGGCTTTCACCGCGAGCTACCGGGTAAACAGGCATCAGTGGCGGATGCGGGAAACGCTCATCCAGATATTCCATAATGATGCGGGATTCCCACGGGGTCAGCTCACGATCCACCAGGGTCGGAACGCTCTGATTCGGGtt                                                                                                  >  2:162475/1‑150 (MQ=255)

                                                aCAGACGGCTTTCACCGCGAGCTACCGGGTAAACAGGCATCAGTGGCGGATGCGGGAAACGCTCATCCAGATATTCCATAATGATGCGAGATTCCCACGGGGTCAGCTCACGATCCACCAGGGTCGGAACGCTCTGATTCGGGTTGAGGTc                                                                                            <  1:823245/151‑1 (MQ=255)

                                                  aGACGGCTTTCACCGCGAGCTACCGGGTAAACAGGCATCAGTGGCGGATGCGGGAAACGCTCATCCAGATATTCCATAATGATGCGAGATTCCCACGGGGTCAGCTCACGATCCACCAGGGTCGGAACGCTCTGATTCGGGTTGAGGTCaa                                                                                          <  1:71563/151‑1 (MQ=255)

                                                  aGACGGCTTTCACCGCGAGCTACCGGGTAAACAGGCATCAGTGGCGGATGCGGGAAACGCTCATCCAGATATTCCATAATGATGCGAGATTCCCACGGGGTCAGCTCACGATCCACCAGGGTCGGAACGCTCTGATTCGGGTTGAGGTCa                                                                                           >  1:1187239/1‑150 (MQ=255)

                                                      ggCTTTCACCGCGAGCTACCGGGTAAACAGGCATCAGTGGCGGATGCGGGAAACGCTCATCCAGATATTCCATAATGATGCGAGATTCCCACGGGGGCAGCTCACGATCCACCAGGGTCGGAACGCTCTGATTCGGGTTGAGGTCAATc                                                                                        >  1:1096562/1‑149 (MQ=255)

                                                       gCTTTCACCGCGAGCTACCGGGGAAACAGGCATCAGTGGCGGAATCGGGAAACCGTCATCCAGATATTCCAGAATGATACGAAATTCCCACGGGGTCAGCTCACGATCCACCAGGGGCGGAACGCTCTGATTCGGGTTGAGGTCAATc                                                                                        >  1:557532/1‑148 (MQ=255)

                                                             aCCGCGAGCTACCGGGTAAACAGGCATCAGTGGCGGATGCGGGAAACGCTCATCCAGATATTCCATAATGATGCGAGATTCCCACGGGGTCAGCTCACGATCCACCAGGGTCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGa                                                                               <  1:942789/151‑1 (MQ=255)

                                                              ccGCGAGCTACCGGGTAAACAGGCATCAGTGGCGGATGCGGGAAACGCTCATCCAGATATTCCATAATGATGCGAGATTCCCACGGGGTCAGCTCACGATCCACCAGGGTCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGa                                                                               <  2:129902/150‑1 (MQ=255)

                                                               cgcgAGCTACCGGGTAAACAGGCATCAGTGGCGGATGCGGGAAACGCTCATCCAGATATTCCATAATGATGCGAGATTCCCACGGGGTCAGCTCACGATCCACCAGGGTCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGAgg                                                                             <  1:60065/151‑1 (MQ=255)

                                                               cgcgAGCTACCGGGTAAACAGGCATCAGTGGCGGATGCGGGAAACGCTCATCCAGATATTCCATAATGATGCGAGATTCCCACGGGGTCAGCTCACGATCCACCAGGGTCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGAgg                                                                             <  2:1185193/151‑1 (MQ=255)

                                                               cgcgAGCTACCGGGTAAACAGGCATCAGTGGCGGATGCGGGAAACGCTCATCCAGATATTCCATAATGATGCGAGATTCCCACGGGGTCAGCTCACGATCCACCAGGGTCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGAgg                                                                             <  1:482637/151‑1 (MQ=255)

                                                                     cTACCGGGTAAACAGGCATCAGTGGCGGATGCGGGAAACGCTCATCCAGATATTCCATAATGATGCGAGATTCCCACGGGGTCAGCTCACGATCCACCAGGGTCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGAGGCGGAtt                                                                       >  2:188523/1‑151 (MQ=255)

                                                                       aCCGGGTAAACAGGCATCAGTGGCGGATGCGGGAAACGCTCATCCAGATATTCCATAATGATGCGAGATTCCCACGGGGTCAGCTCACGATCCACCAGGGTCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGAGGCGGAtt                                                                       <  2:1163904/149‑1 (MQ=255)

                                                                       aCCGGGTAAACAGGCATCAGTGGCGGATGCGGGAAACGCTCATCCAGATATTCCATAATGATGCGAGATTCCCACGGGGTCAGCTCACGATCCACCAGGGTCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGAGGCGGATTGt                                                                     <  1:374077/151‑1 (MQ=255)

                                                                       aCCGGGTAAACAGGCATCAGTGGCGGATGCGGGAAACGCTCATCCAGATATTCCATAATGATGCGAGATTCCCACGGGGTCAGCTCACGATCCACCAGGGTCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGAGGCGGATTGt                                                                     >  1:876835/1‑151 (MQ=255)

                                                                            gTAAACAGGCATCAGTGGCGGATGCGGGAAACGCTCATCCAGATATTCCATAATGATGCGAGATTCCCACGGGGTCAGCTCACGATCCACCAGGGTCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGAGGCGGATTGTCCttt                                                                <  1:32780/151‑1 (MQ=255)

                                                                               aaCAGGCATCAGTGGCGGATGCGGGAAACGCTCATCCAGATATTCCATAATGATGCGAGATTTCCACGGGGTCAGCTCACGATCCACCAGGGGCGGAACGCTCTGATTCGGGGTGAGGTCAATCAGATCCTGAGGCGGATTGTCCTTTTcc                                                             >  1:97054/1‑151 (MQ=255)

                                                                               aaCAGGCATCAGTGGCGGATGCGGGAAACGCTCATCCAGATATTCCATAATGATGCGAGATTCCCACGGGGTCAGCTCACGATCCACCAGGGTCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGAGGCGGATTGTCCTTTTcc                                                             <  1:212893/151‑1 (MQ=255)

                                                                                  aGGCATCAGTGGCGGATGCGGGAAACGCTCATCCAGATATTCCATAATGATGCGAGATTCCCACGGGGTCAGCTCACGATCCACCAGGGTCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGAGGCGGATTGTCCTTTTCCACg                                                          <  2:659531/151‑1 (MQ=255)

                                                                                      aTCAGTGGCGGATGCGGGAAACGCTCATCCAGATATTCCATAATGATGCGAGATTCCCACGGGGTCAGCTCACGATCCACCAGGGTCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGAGGCGGATTGTCCTTTTCCACGTGtt                                                      <  1:422662/151‑1 (MQ=255)

                                                                                        cAGTGGCGGATGCGGGAAACGCTCATCCAGATATTCCATAATGATGCGAGATTCCCACGGGGTCAGCTCACGATCCACCAGGGTCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGAGGCGGATTGTCCTTTTCCACGTGTTCg                                                    <  1:855841/151‑1 (MQ=255)

                                                                                         aGTGGCGGATGCGGGAAACGCTCATCCAGATATTCCATAATGATGCGAGATTCCCACGGGGTCAGCTCACGATCCACCAGGGTCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGAGGCGGATTGTCCTTTTCCACGTGTTCGa                                                   <  1:912618/151‑1 (MQ=255)

                                                                                              cGGATGCGGGAAACGCTCATCCAGATATTCCATAATGATGCGAGATTCCCACGGGGTCAGCTCACGATCCACCAGGGTCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGAGGCGGATTGTCCTTTTCCACGTGTTCGATCTCg                                              >  2:748195/1‑151 (MQ=255)

                                                                                                gATGCGGGAAACGCTCATCCAGATATTCCATAATGATGCGAGATTCCCACGGGGTCAGCTCACGATCCACCAGGGTCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGAGGCGGATTGTCCTTTTCCACGTGTTCGATCTCGaa                                            <  1:467329/151‑1 (MQ=255)

                                                                                                      ggAAACGCTCATCCAGATATTCCATAATGATGCGAGATTCCCACGGGGTCAGCTCACGATCCACCAGGGTCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGAGGCGGATTGTCCTTTTCCACGTGTTCGATCTCGAAACTTac                                      >  1:28950/1‑151 (MQ=255)

                                                                                                       gAAACGCTCATCCAGATATTCCATAATGATGCGAGATTCCCACGGGGTCAGCTCACGATCCACCAGGGTCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGAGGCGGATTGTCCTTTTCCACGTGTTCGATCTCGAAACTTac                                      >  2:586186/1‑150 (MQ=255)

                                                                                                             cTCATCCAGATATTCCATAATGATGCGAGATTCCCACGGGGTCAGCTCACGATCCACCAGGGTCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGAGGCGGATTGTCCTTTTCCACGTGTTCGATCTCGAAACTTACACCttt                                <  1:929276/150‑1 (MQ=255)

                                                                                                              tCATCCAGATATTCCATAATGATGCGAGATTCCCACGGGGTCAGCTCACGATCCACCAGGGTCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGAGGCGGATTGTCCTTTTCCACGTGTTCGATCTCGAAACTTACACCTTtct                              >  1:613650/1‑151 (MQ=255)

                                                                                                               cATCCAGATATTCCATAATGATGCGAGATTCCCACGGGGTCAGCTCACGATCCACCAGGGTCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGAGGCGGATTGTCCTTTTCCACGTGTTCGATCTCGAAACTTACACCTTtctc                             <  1:304461/151‑1 (MQ=255)

                                                                                                               cATCCAGATATTCCATAATGATGCGAGATTCCCACGGGGTCAGCTCACGATCCACCAGGGTCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGAGGCGGATTGTCCTTTTCCACGTGTTCGATCTCGAAACTTACACCTTtc                               <  2:225660/149‑1 (MQ=255)

                                                                                                                aTCCAGATATTCCATAATGATGCGAGATTCCCACGGGGTCAGCTCACGATCCACCAGGGTCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGAGGCGGATTGTCCTTTTCCACGTGTTCGATCTCGAAACTTACACCTTTCTca                            <  2:1011550/151‑1 (MQ=255)

                                                                                                                  ccAGATATTCCATAATGATGCGAGATTCCCACGGGGTCAGCTCACGATCCACCAGGGTCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGAGGCGGATTGTCCTTTTCCACGTGTTCGATCTCGAAACTTACACCTTTCTcag                           <  1:230826/150‑1 (MQ=255)

                                                                                                                    aGATATTCCATAATGATGCGAGATTCCCACGGGGTCAGCTCACGATCCACCAGGGTCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGAGGCGGATTGTCCTTTTCCACGTGTTCGATCTCGAAACTTACACCTTTCTcagcca                        <  2:983527/151‑1 (MQ=255)

                                                                                                                      atatTCCATAATGATGCGAGATTCCCACGGGGTCAGCTCACGATCCACCAGGGTCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGAGGCGGATTGTCCTTTTCCACGTGTTCGATCTCGAAACTTACACCTTTCTcagccagc                      <  2:602773/151‑1 (MQ=255)

                                                                                                                             aTAATGATGCGAGATTCCCACGGGGTCAGCTCACGATCCACCAGGGTCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGAGGCGGATTGTCCTTTTCCACGTGTTCGATCTCGAAACTTACACCTTTCTCAGCCAGCACAATGc               >  2:991081/1‑151 (MQ=255)

                                                                                                                             aTAATGATGCGAGATTCCCACGGGGTCAGCTCACGATCCACCAGGGTCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGAGGCGGATTGTCCTTTTCCACGTGTTCGATCTCGAAACTTACACCTTTCTCAGCCAGCACAATGc               >  2:412939/1‑151 (MQ=255)

                                                                                                                                  gatgCGAGATTCCCACGGGGTCAGCTCACGATCCACCAGGGTCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGAGGCGAATTGTCCTTTTCCACGTGTTCGATCTCGAAACTTACACCTTTCTCAGCCAGCACAATGCGGAcc          <  1:462771/151‑1 (MQ=255)

                                                                                                                                   atgCGAGATTCCCACGGGGTCAGCTCACGATCCACCAGGGTCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGAGGCGGATTGTCCTTTTCCACGTGTTCGATCTCGAAACTTACACCTTTCTCAGCCAGCACAATGCGGACCt         <  1:985156/151‑1 (MQ=255)

                                                                                                                                    tgCGAGATTCCCACGGGGTCAGCTCACGATCCACCAGGGTCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGAGGCGGATTGTCCTTTTCCACGTGTTCGATCTCGAAACTTACACCTTTCTCAGCCAGCACAATGCGGACCTg        >  1:50743/1‑151 (MQ=255)

                                                                                                                                     gCGAGATTCCCACGGGGTCAGCTCACGATCCACCAGGGTCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGAGGCGGATTGTCCTTTTCCACGTGTTCGATCTCGAAACTTACACCTTTCTCAGCCAGCACAATGCGGACCTGa       <  2:971266/151‑1 (MQ=255)

                                                                                                                                      cGAGATTCCCACGGGGTCAGCTCACGATCCACCAGGGTCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGAGGCGGATTGTCCTTTTCCACGTGTTCGATCTCGAAACTTACACCTTTCTCAGCCAGCACAATGCGGACCTGAt      >  1:1188370/1‑151 (MQ=255)

                                                                                                                                      cGAGATTCCCACGGGGTCAGCTCACGATCCACCAGGGTCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGAGGCGGATTGTCCTTTTCCACGTGTTCGATCTCGAAACTTACACCTTTCTCAGCCAGCACAATGCGGACCTGAt      >  2:766003/1‑151 (MQ=255)

                                                                                                                                      cGAGATTCCCACGGGGTCAGCTCACGATCCACCAGGGTCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGAGGCGGATTGTCCTTTTCCACGTGTTCGATCTCGAAACTTACACCTTTCTCAGCCAGCACAATGCGGACCTGAt      <  2:228669/151‑1 (MQ=255)

                                                                                                                                       gagaTTCCCACGGGGTCAGCTCACGATCCACCAGGGTCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGAGGCGGATTGTCCTTTTCCACGTGTTCGATCTCGAAACTTACACCTTTCTCAGCCAGCACAATGCGGACCTGATg     >  2:519978/1‑151 (MQ=255)

                                                                                                                                          aTTCCCACGGGGTCAGCTCACGATCCACCAGGGTCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGAGGCGGATTGTCCTTTTCCACGTGTTCGATCTCGAAACTTACACCTTTCTCAGCCAGCACAATGCGGACCTGATGGCt  <  2:1187269/151‑1 (MQ=255)

TGATGGTGTTCATCAGCGTGTACCAGTCTTTTTCGATGCGATGCATGTACAGACGGCTTTCACCGCGAGCTACCGGGTAAACAGGCATCAGTGGCGGATGCGGGAAACGCTCATCCAGATATTCCATAATGATGCGAGATTCCCACAGGGTCAGCTCACGATCCACCAGGGTCGGAACGCTCTGATTCGGGTTGAGGTCAATCAGATCCTGAGGCGGATTGTCCTTTTCCACGTGTTCGATCTCGAAACTTACACCTTTCTCAGCCAGCACAATGCGGACCTGATGGCT  >  NC_000913/3377069‑3377357

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 18 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 38 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A