Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A5 F50 I1 R1 141 76.7 2402765 98.4% 2364320 150.1

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,668,330 G→A P287S (CCG→TCG)  yhjA ← putative cytochrome C peroxidase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,668,3300GA100.0% 320.2 / NA 78P287S (CCG→TCG) yhjAputative cytochrome C peroxidase
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (48/30);  total (48/30)

CAGCGCATTTTCATCTCCGCGCAACCATTTATCAAATGGGGAATCCGGCGTAATTAATGTTTTCTCAAATTCAGCAATGGCATCAGTAATATTTTCGCCACTGAAACCTTGCGGATAGACTTCGAGGAACTGCGTTTTAAGCTGCGGATCTTTTTCCAGCTTAGCAATAATTTCGTCCCAGGATTTCGACGCCATTTCAATCGGGTTCAACGGCGGTCCACCAGCCTGATCCTGCAATGTTGCCGCACGACCATCCCAGAACTGCTCAACGTTAAATACTGAGTTAAATACCG  >  NC_000913/3668184‑3668476
                                                                                                                                                  |                                                                                                                                                  
cAGCGCATTTTCATCTCCGCGCAACCATTTATCAAATGGGGAATCCGGCGTAATTAATGTTTTCTCAAATTCAGCAATGGCATCAGTAATATTTTCGCCACTGAAACCTTGCGGATAGACTTCGAGGAACTGCGTTTTAAGCTGCGAATCt                                                                                                                                                <  1:860405/151‑1 (MQ=255)
     cATTTTCATCTCCGCGCAACCATTTATCAAATGGGGAATCCGGCGTAATTAATGTTTTCTCAAATTCAGCAATGGCATCAGTAATATTTTCGCCACTGAAACCTTGCGGATAGACTTCGAGGAACTGCGTTTTAAGCTGCGAATCTTTTTc                                                                                                                                           >  2:832579/1‑151 (MQ=255)
      aTTTTCATCTCCGCGCAACCATTTATCAAATGGGGAATCCGGCGTAATTAATGTTTTCTCAAATTCAGCAATGGCATCAGTAATATTTTCGCCACTGAAACCTTGCGGATAGACTTCGAGGAACTGCGTTTTAAGCTGCGAATCTTTTTcc                                                                                                                                          <  1:596845/151‑1 (MQ=255)
           cATCTCCGCGCAACCATTTATCAAATGGGGAATCCGGCGTAATTAATGTTTTCTCAAATTCAGCAATGGCATCAGTAATATTTTCGCCACTGAAACCTTGCGGATAGACTTCGAGGAACTGCGTTTTAAGCTGCGAATCTTTTTCCAGCtt                                                                                                                                     <  1:25372/151‑1 (MQ=255)
              ctcCGCGCAACCATTTATCAAATGGGGAATCCGGCGTAATTAATGTTTTCTCAAATTCAGCAATGGCATCAGTAATATTTTCGCCACTGAAACCTTGCGGATAGACTTCGAGGAACTGCGTTTTAAGCTGCGAATCTTTTTCCAGCTTAGc                                                                                                                                  >  2:86964/1‑151 (MQ=255)
                 cgcgCAACCATTTATCAAATGGGGAATCCGGCGTAATTAATGTTTTCTCAAATTCAGCAATGGCATCAGTAATATTTTCGCCACTGAAACCTTGCGGATAGACTTCGAGGAACTGCGTTTTAAGCTGCGAATCTTTTTCCAGCTTAGCaat                                                                                                                               <  2:913610/151‑1 (MQ=255)
                        ccATTTATCAAATGGGGAATCCGGCGTAATTAATGTTTTCTCAAATTCAGCAATGGCATCAGTAATATTTTCGCCACTGAAACCTTGCGGATAGACTTCGAGGAACTGCGTTTTAAGCTGCGAATCTTTTTCCAGCTTAGCAATAATTTCg                                                                                                                        <  2:934318/151‑1 (MQ=255)
                                cAAATGGGGAATCCGGCGTAATTAATGTTTTCTCAAATTCAGCAATGGCATCAGTAATATTTTCGCCACTGAAACCTTGCGGATAGACTTCGAGGAACTGCGTTTTAAGCTGCGAATCTTTTTCCAGCTTAGCAATAATTTCGTCCCAGGa                                                                                                                <  1:310234/151‑1 (MQ=255)
                                 aaaTGGGGAATCCGGCGTAATTAATGTTTTCTCAAATTCAGCAATGGCATCAGTAATATTTTCGCCACTGAAACCTTGCGGATAGACTTCGAGGAACTGCGTTTTAAGCTGCGAATCTTTTTCCAGCTTAGCAATAATTTCGTCCCAGGAt                                                                                                               <  1:1149434/151‑1 (MQ=255)
                                    tGGGGAATCCGGCGTAATTAATGTTTTCTCAAATTCAGCAATGGCATCAGTAATATTTTCGCCACTGAAACCTTGCGGATAGACTTCGAGGAACTGCGTTTTAAGCTGCGAATCTTTTTCCAGCTTAGCAATAATTTCGTCCCAGGATTTc                                                                                                            >  1:242844/1‑151 (MQ=255)
                                     ggggAATCCGGCGTAATTAATGTTTTCTCAAATTCAGCAATGGCATCAGTAATATTTTCGCCACTGAAACCTTGCGGATAGACTTCGAGGAACTGCGTTTTAAGCTGCGAATCTTTTTCCAGCTTAGCAATAATTTCGTCCCAGGATTTc                                                                                                            <  2:584090/150‑1 (MQ=255)
                                     ggggAATCCGGCGTAATTAATGTTTTCTCAAATTCAGCAATGGCATCAGTAATATTTTCGCCACTGAAACCTTGCGGATAGACTTCGAGGAACTGCGTTTTAAGCTGCGAATCTTTTTCCAGCTTAGCAATAATTTCGTCCCAGGATTTc                                                                                                            <  2:1076855/150‑1 (MQ=255)
                                        gAATCCGGCGTAATTAATGTTTTCTCAAATTCAGCAATGGCATCAGTAATATTTTCGCCACTGAAACCTTGCGGATAGACTTCGAGGAACTGCGTTTTAAGCTGCGAATCTTTTTCCAGCTTAGCAATAATTTCGTCCCAGGATTTCGACg                                                                                                        <  1:559615/151‑1 (MQ=255)
                                           tCCGGCGTAATTAATGTTTTCTCAAATTCAGCAATGGCATCAGTAATATTTTCGCCACTGAAACCTTGCGGATAGACTTCGAGGAACTGCGTTTTAAGCTGCGAATCTTTTTCCAGCTTAGCAATAATTTCGTCCCAGGATTTCGACGcc                                                                                                      >  2:826005/1‑150 (MQ=255)
                                            ccGGCGTAATTAATGTTTTCTCAAATTCAGCAATGGCATCAGTAATATTTTCGCCACTGAAACCTTGCGGATAGACTTCGAGGAACTGCGTTTTAAGCTGCGAATCTTTTTCCAGCTTAGCAATAATTTCGTCCCAGGATTTCGACGCCAt                                                                                                    >  2:874722/1‑151 (MQ=255)
                                                   aattaatGTTTTCTCAAATTCAGCAATGGCATCAGTAATATTTTCGCCACTGAAACCTTGCGGATAGACTTCGAGGAACTGCGTTTTAAGCTGCGAATCTTTTTCCAGCTTAGCAATAATTTCGTCCCAGGATTTCGACGCCATTTCAATc                                                                                             >  2:274932/1‑151 (MQ=255)
                                                   aattaatGTTTTCTCAAATTCAGCAATGGCATCAGTAATATTTTCGCCACTGAAACCTTGCGGATAGACTTCGAGGAACTGCGTTTTAAGCTGCGAATCTTTTTCCAGCTTAGCAATAATTTCGTCCCAGGATTTCGACGCCATTTCAATc                                                                                             >  2:1179997/1‑151 (MQ=255)
                                                     ttaatGTTTTCTCAAATTCAGCAATGGCATCAGTAATATTTTCGCCACTGAAACCTTGCGGATAGACTTCGAGGAACTGCGTTTTAAGCTGCGAATCTTTTTCCAGCTTAGCAATAATTTCGTCCCAGGATTTCGACGCCATTTCAATCgg                                                                                           >  2:235214/1‑151 (MQ=255)
                                                       aatGTTTTCTCAAATTCAGCAATGGCATCAGTAATATTTTCGCCACTGAAACCTTGCGGATAGACTTCGAGGAACTGCGTTTTAAGCTGCGAATCTTTTTCCAGCTTAGCAATAATTTCGTCCCAGGATTTCGACGCCATTTCAATCggg                                                                                          <  1:1185907/150‑1 (MQ=255)
                                                       aatGTTTTCTCAAATTCAGCAATGGCATCAGTAATATTTTCGCCACTGAAACCTTGCGGATAGACTTCGAGGAACTGCGTTTTAAGCTGCGAATCTTTTTCCAGCTTAGCAATAATTTCGTCCCAGGATTTCGACGCCATTTCAATCGGGt                                                                                         >  1:1129127/1‑151 (MQ=255)
                                                          gTTTTCTCAAATTCAGCAATGGCATCAGTAATATTTTCGCCACTGAAACCTTGCGGATAGACTTCGAGGAACTGCGTTTTAAGCTGCGAATCTTTTTCCAGCTTAGCAATAATTTCGTCCCAGGATTTCGACGCCATTTCAATCGGGTTCa                                                                                      <  1:960723/151‑1 (MQ=255)
                                                           ttttCTCAAATTCAGCAATGGCATCAGTAATATTTTCGCCACTGAAACCTTGCGGATAGACTTCGAGGAACTGCGTTTTAAGCTGCGAATCTTTTTCCAGCTTAGCAATAATTTCGTCCCAGGATTTCGACGCCATTTCAATCGGGTTCa                                                                                      >  1:1169952/1‑150 (MQ=255)
                                                            tttCTCAAATTCAGCAATGGCATCAGTAATATTTTCGCCACTGAAACCTTGCGGATAGACTTCGAGGAACTGCGTTTTAAGCTGCGAATCTTTTTCCAGCTTAGCAATAATTTCGTCCCAGGATTTCGACGCCATTTCAATCGGGTTCaa                                                                                     <  1:961793/150‑1 (MQ=255)
                                                                 cAAATTCAGCAATGGCATCAGTAATATTTTCGCCACTG‑AACCTTGCGGATAGACTTCGAGGAACTGCGTTTTAAGCTGCGAATCTTTTTCCAGCTTAGCAATAATTTCGTCCCAGGATTTCGACGCCATTTCAATCGGGTTCAAcggc                                                                                 <  2:1037494/148‑1 (MQ=255)
                                                                    aTTCAGCAATGGCATCAGTAATATTTTCGCCACTGAAACCTTGCGGATAGACTTCGAGGAACTGCGTTTTAAGCTGCGAATCTTTTTCCAGCTTAGCAATAATTTCGTCCCAGGATTTCGACGCCATTTCAATCGGGTTCAACGGCGGTcc                                                                            <  1:1121039/151‑1 (MQ=255)
                                                                    aTTCAGCAATGGCATCAGTAATATTTTCGCCACTGAAACCTTGCGGATAGACTTCGAGGAACTGCGTTTTAAGCTGCGAATCTTTTTCCAGCTTAGCAATAATTTCGTCCCAGGATTTCGACGCCATTTCAATCGGGTTCAACGGCGGTcc                                                                            >  2:383273/1‑151 (MQ=255)
                                                                     ttCAGCAATGGCATCAGTAATATTTTCGCCACTGAAACCTTGCGGATAGACTTCGAGGAACTGCGTTTTAAGCTGCGAATCTTTTTCCAGCTTAGCAATAATTTCGTCCCAGGATTTCGACGCCATTTCAATCGGGTTCAACGGCGGTcc                                                                            >  2:399567/1‑150 (MQ=255)
                                                                       cAGCAATGGCATCAGTAATATTTTCGCCACTGAAACCTTGCGGATAGACTTCGAGGAACTGCGTTTTAAGCTGCGAATCTTTTTCCAGCTTAGCAATAATTTCGTCCCAGGATTTCGACGCCATTTCAATCGGGTTCAACGGCGGTccac                                                                          <  1:105484/150‑1 (MQ=255)
                                                                       cAGCAATGGCATCAGTAATATTTTCGCCACTGAAACCTTGCGGATAGACTTCGAGGAACTGCGTTTTAAGCTGCGAATCTTTTTCCAGCTTAGCAATAATTTCGTCCCAGGATTTCGACGCCATTTCAATCGGGTTCAACGGCGGTccac                                                                          <  2:559212/150‑1 (MQ=255)
                                                                         gCAATGGCATCAGTAATATTTTCGCCACTGAAACCTTGCGGATAGACTTCGAGGAACTGCGTTTTAAGCTGCGAATCTTTTTCCAGCTTAGCAATAATTTCGTCCCAGGATTTCGACGCCATTTCAATCGGGTTCAACGGCGGTccacc                                                                         >  1:857928/1‑149 (MQ=255)
                                                                         gCAATGGCATCAGTAATATTTTCGCCACTGAAACCTTGCGGATAGACTTCGAGGAACTGCGTTTTAAGCTGCGAATCTTTTTCCAGCTTAGCAATAATTTCGTCCCAGGATTTCGACGCCATTTCAATCGGGTTCAACGGCGGTCCACCAg                                                                       <  1:996006/151‑1 (MQ=255)
                                                                           aaTGGCATCAGTAATATTTTCGCCACTGAAACCTTGCGGATAGACTTCGAGGAACTGCGTTTTAAGCTGCGAATCTTTTTCCAGCTTAGCAATAATTTCGTCCCAGGATTTCGACGCCATTTCAATCGGGTTCAACGGCGGTCCACCAGcc                                                                     >  1:1049159/1‑151 (MQ=255)
                                                                           aaTGGCATCAGTAATATTTTCGCCACTGAAACCTTGCGGATAGACTTCGAGGAACTGCGTTTTAAGCTGCGAATCTTTTTCCAGCTTAGCAATAATTTCGTCCCAGGATTTCGACGCCATTTCAATCGGGTTCAACGGCGGTCCACCAGcc                                                                     <  1:558276/151‑1 (MQ=255)
                                                                            aTGGCATCAGTAATATTTTCGCCACTGAAACCTTGCGGATAGACTTCGAGGAACTGCGTTTTAAGCTGCGAATCTTTTTCCAGCTTAGCAATAATTTCGTCCCAGGATTTCGACGCCATTTCAATCGGGTTCAACGGCGGTCCACCAGcc                                                                     >  1:380848/1‑150 (MQ=255)
                                                                                  tCAGTAATATTTTCGCCACTGAAACCTTGCGGATAGACTTCGAGGAACTGCGTTTTAAGCTGCGAATCTTTTTCCAGCTTAGCAATAATTTCGTCCCAGGATTTCGACGCCATTTCAATCGGGTTCAACGGCGGTCCACCAGCCTGATCCt                                                              >  2:341701/1‑151 (MQ=255)
                                                                                  tCAGTAATATTTTCGCCACTGAAACCTTGCGGATAGACTTCGAGGAACTGCGTTTTAAGCTGCGAATCTTTTTCCAGCTTAGCAATAATTTCGTCCCAGGATTTCGACGCCATTTCAATCGGGTTCAACGGCGGTCCACCAGCCTGATCCt                                                              >  2:303341/1‑151 (MQ=255)
                                                                                   cAGTAATATTTTCGCCACTGAAATCTTGCGGATAGACTTCGAGGAACTGCGTTTTAAGCTGCGAATCTTTTTCCAGCTTAGCAATAATTTCGTCCCAGGATTTCGACGCCATTTCAATCGGGTTCAACGGCGGTCCACCAGCCTGATCCTg                                                             >  2:184389/1‑151 (MQ=255)
                                                                                    aGTAATATTTTCGCCACTGAAACCTTGCGGATAGACTTCGAGGAACTGCGTTTTAAGCTGCGAATCTTTTTCCAGCTTAGCAATAATTTCGTCCCAGGATTTCGACGCCATTTCAATCGGGTTCAACGGCGGTCCACCAGCCTGATCCTGc                                                            >  2:473353/1‑151 (MQ=255)
                                                                                      tAATATTTTCGCCACTGAAACCTTGCGGATAGACTTCGAGGAACTGCGTTTTAAGCTGCGAATCTTTTTCCAGCTTAGCAATAATTTCGTCCCAGGATTTCGACGCCATTTCAATCGGGTTCAACGGCGGTCCACCAGCCTGATCCTGCa                                                           >  1:676341/1‑150 (MQ=255)
                                                                                      tAATATTTTCGCCACTGAAACCTTGCGGATAGACTTCGAGGAACTGCGTTTTAAGCTGCGAATCTTTTTCCAGCTTAGCAATAATTTCGTCCCAGGATTTCGACGCCATTTCAATCGGGTTCAACGGCGGTCCACCAGCCTGATCCTGCa                                                           >  2:159416/1‑150 (MQ=255)
                                                                                       aaTATTTTCGCCACTGAAACCTTGCGGATAGACTTCGAGGAACTGCGTTTTAAGCTGCGAATCTTTTTCCAGCTTAGCAATAATTTCGTCCCAGGATTTCGACGCCATTTCAATCGGGTTCAACGGCGGTCCACCAGCCTGATCCTGCaa                                                          <  2:559171/150‑1 (MQ=255)
                                                                                       aaTATTTTCGCCACTGAAACCTTGCGGATAGACTTCGAGGAACTGCGTTTTAAGCTGCGAATCTTTTTCCAGCTTAGCAATAATTTCGTCCCAGGATTTCGACGCCATTTCAATCGGGTTCAACGGCGGTCCACCAGCCTGATCCTGCAAt                                                         <  2:582657/151‑1 (MQ=255)
                                                                                        atatTTTCGCCACTGAAACCTTGCGGATAGACTTCGAGGAACTGCGTTTTAAGCTGCGAATCTTTTTCCAGCTTAGCAATAATTTCGTCCCAGGATTTCGACGCCATTTCAATCGGGTTCAACGGCGGTCCACCAGCCTGATCCTGCAAt                                                         >  1:944017/1‑150 (MQ=255)
                                                                                        atatTTTCGCCACTGAAACCTTGCGGATAGACTTCGAGGAACTGCGTTTTAAGCTGCGAATCTTTTTCCAGCTTAGCAATAATTTCGTCCCAGGATTTCGACGCCATTTCAATCGGGTTCAACGGCGGTCCACCAGCCTGATCCTGCAATg                                                        >  2:280876/1‑151 (MQ=255)
                                                                                         tatTTTCGCCACTGAAACCTTGCGGATAGACTTCGAGGAACTGCGTTTTAAGCTGCGAATCTTTTTCCAGCTTAGCAATAATTTCGTCCCAGGATTTCGACGCCATTTCAATCGGGTTCAACGGCGGTCCACCAGCCTGATCCTGCAATGt                                                       >  1:345619/1‑151 (MQ=255)
                                                                                          atTTTCGCCACTGAAACCTTGCGGATAGACTTCGAGGAACTGCGTTTTAAGCTGCGAATCTTTTTCCAGCTTAGCAATAATTTCGTCCCAGGATTTCGACGCCATTTCAATCGGGTTCAACGGCGGTCCACCAGCCTGATCCTGCAATGtt                                                      >  2:739579/1‑151 (MQ=255)
                                                                                          atTTTCGCCACTGAAACCTTGCGGATAGACTTCGAGGAACTGCGTTTTAAGCTGCGAATCTTTTTCCAGCTTAGCAATAATTTCGTCCCAGGATTTCGACGCCATTTCAATCGGGTTCAACGGCGGTCCACCAGCCTGATCCTGCAATGtt                                                      <  1:806204/151‑1 (MQ=255)
                                                                                            tttCGCCACTGAAACCTTGCGGATAGACTTCGAGGAACTGCGTTTTAAGCTGCGAATCTTTTTCCAGCTTAGCAATAATTTCGTCCCAGGATTTCGACGCCATTTCAATCGGGTTCAACGGCGGTCCACCAGCCTGATCCTGCAATGTTGc                                                    >  2:1027404/1‑151 (MQ=255)
                                                                                              tCGCCACTGAAACCTTGCGGATAGACTTCGAGGAACTGCGTTTTAAGCTGCGAATCTTTTTCCAGCTTAGCAATAATTTCGTCCCAGGATTTCGACGCCATTTCAATCGGGTTCAACGGCGGTCCACCAGCCTGATCCTGCAATGTTGcc                                                   >  1:926047/1‑150 (MQ=255)
                                                                                                gCCACTGAAACCTTGCGGATAGACTTCGAGGAACTGCGTTTTAAGCTGCGAATCTTTTTCCAGCTTAGCAATAATTTCGTCCCAGGATTTCGACGCCATTTCAATCGGGTTCAACGGCGGTCCACCAGCCTGATCCTGCAATGTTGCCGc                                                 >  2:26440/1‑150 (MQ=255)
                                                                                                  cACTGAAACCTTGCGGATAGACTTCGAGGAACTGCGTTTTAAGCTGCGAATCTTTTTCCAGCTTAGCAATAATTTCGTCCCAGGATTTCGACGCCATTTCAATCGGGTTCAACGGCGGTCCACCAGCCTGATCCTGCCATGTTGCCGCACg                                              >  2:120539/1‑151 (MQ=255)
                                                                                                     tGAAACCTTGCGGATAGACTTCGAGGAACTGCGTTTTAAGCTGCGAATCTTTTTCCAGCTTAGCAATAATTTCGTCCCAGGATTTCGACGCCATTTCAATCGGGTTCAACGGCGGTCCACCAGCCTGATCCTGCAATGTTGCCGCACGAcc                                           >  1:1104164/1‑151 (MQ=255)
                                                                                                          ccTTGCGGATAGACTTCGAGGAACTGCGTTTTAAGCTGCGAATCTTTTTCCAGCTTAGCAATAATTTCGTCCCAGGATTTCGACGCCATTTCAATCGGGTTCAACGGCGGTCCACCAGCCTGATCCTGCAATGTTGCCGCACGACCATccc                                      >  1:246596/1‑151 (MQ=255)
                                                                                                             tGCGGATAGACTTCGAGGAACTGCGTTTTAAGCTGCGAATCTTTTTCCAGCTTAGCAATAATTTCGTCCCAGGATTTCGACGCCATTTCAATCGGGTTCAACGGCGGTCCACCAGCCTGATCCTGCAATGTTGCCGCACGACCATCCCa                                     <  2:345622/149‑1 (MQ=255)
                                                                                                             tGCGGATAGACTTCGAGGAACTGCGTTTTAAGCTGCGAATCTTTTTCCAGCTTAGCAATAATTTCGTCCCAGGATTTCGACGCCATTTCAATCGGGTTCAACGGCGGTCCACCAGCCTGATCCTGCAATGTTGCCGCACGACCATCCCAg                                    <  1:333848/150‑1 (MQ=255)
                                                                                                                ggATAGACTTCGAGGAACTGCGTTTTAAGCTGCGAATCTTTTTCCAGCTTAGCAATAATTTCGTCCCAGGATTTCGACGCCATTTCAATCGGGTTCAACGGCGGTCCACCAGCCTGATCCTGCAATGTTGCCGCACGACCATCCCAGAACt                                >  1:1058692/1‑151 (MQ=255)
                                                                                                                ggATAGACTTCGAGGAACTGCGTTTTAAGCTGCGAATCTTTTTCCAGCTTAGCAATAATTTCGTCCCAGGATTTCGACGCCATTTCAATCGGGTTCAACGGCGGTCCACCAGCCTGATCCTGCAATGTTGCCGCACGACCATCCCAGAACt                                >  2:145046/1‑151 (MQ=255)
                                                                                                                 gATAGACTTCGAGGAACTGCGTTTTAAGCTGCGAATCTTTTTCCAGCTTAGCAATAATTTCGTCCCAGGATTTCGACGCCATTTCAATCGGGTTCAACGGCGGTCCACCAGCCTGATCCTGCAATGTTGCCGCACGACCATCCCAGAACTg                               <  1:314988/151‑1 (MQ=255)
                                                                                                                       cTTCGAGGAACTGCGTTTTAAGCTGCGAATCTTTTTCCAGCTTAGCAATAATTTCGTCCCAGGATTTCGACGCCATTTCAATCGGGTTCAACGGCGGTCCACCAGCCTGATCCTGCAATGTTGCCGCACGACCATCCCAGAACTGCTcga                          >  2:883162/1‑148 (MQ=255)
                                                                                                                       cTTCGAGGAACTGCGTTTTAAGCTGCGAATCTTTTTCCAGCTTAGCAATAATTTCGTCCCAGGATTTCGACGCCATTTCAATCGGGTTCAACGGCGGTCCACCAGCCTGATCCTGCAATGTTGCCGCACGACCATCCCAGAACTGCTCAAc                         >  1:1168093/1‑151 (MQ=255)
                                                                                                                       cTTCGAGGAACTGCGTTTTAAGCTGCGAATCTTTTTCCAGCTTAGCAATAATTTCGTCCCAGGATTTCGACGCCATTTCAATCGGGTTCAACGGCGGTCCACCAGCCTGATCCTGCAATGTTGCCGCACGACCATCCCAGAACTGCTCAAc                         >  1:431560/1‑151 (MQ=255)
                                                                                                                         tCGAGGAACTGCGTTTTAAGCTGCGAATCTTTTTCCAGCTTAGCAATAATTTCGTCCCAGGATTTCGACGCCATTTCAATCGGGTTCAACGGCGGTCCACCAGCCTGATCCTGCAATGTTGCCGCACGACCATCCCAGAACTGCTCAAc                         <  2:926064/149‑1 (MQ=255)
                                                                                                                         tCGAGGAACTGCGTTTTAAGCTGCGAATCTTTTTCCAGCTTAGCAATAATTTCGTCCCAGGATTTCGACGCCATTTCAATCGGGTTCAACGGCGGTCCACCAGCCTGATCCTGCAATGTTGCCGCACGACCATCCCAGAACTGCTCAACg                        <  2:1123518/150‑1 (MQ=255)
                                                                                                                          cGAGGAACTGCGTTTTAAGCTGCGAATCTTTTTCCAGCTTAGCAATAATTTCGTCCCAGGATTTCGACGCCATTTCAATCGGGTTCAACGGCGGTCCACCAGCCTGATCCTGCAATGTTGCCGCACGACCATCCCAGAACTGCTCAACGtt                      >  2:1060758/1‑151 (MQ=255)
                                                                                                                             ggAACTGCGTTTTAAGCTGCGAATCTTTTTCCAGCTTAGCAATAATTTCGTCCCAGGATTTCGACGCCATTTCAATCGGGTTCAACGGCGGTCCACCAGCCTGATCCTGCAATGTTGCCGCACGACCATCCCAGAACTGCTCAACGTTaaa                   <  2:148099/151‑1 (MQ=255)
                                                                                                                             ggAACTGCGTTTTAAGCTGCGAATCTTTTTCCAGCTTAGCAATAATTTCGTCCCAGGATTTCGACGCCATTTCAATCGGGTTCAACGGCGGTCCACCAGCCTGATCCTGCAATGTTGCCGCACGACCATCCCAGAACTGCTCAACGTTaa                    >  2:1128737/1‑150 (MQ=255)
                                                                                                                               aaCTGCGTTTTAAGCTGCGAATCTTTTTCCAGCTTAGCAATAATTTCGTCCCAGGATTTCGACGCCATTTCAATCGGGTTCAACGGCGGTCCACCAGCCTGATCCTGCAATGTTGCCGCACGACCATCCCAGAACTGCTCAACGTTaaa                   >  1:673454/1‑149 (MQ=255)
                                                                                                                               aaCTGCGTTTTAAGCTGCGAATCTTTTTCCAGCTTAGCAATAATTTCGTCCCAGGATTTCGACGCCATTTCAATCGGGTTCAACGGCGGTCCACCAGCCTGATCCTGCAATGTTGCCGCACGACCATCCCAGAACTGCTCAACGTTAAAt                  >  1:1197526/1‑150 (MQ=255)
                                                                                                                                  tGCGTTTTAAGCTGCGAATCTTTTTCCAGCTTAGCAATAATTTCGTCCCAGGATTTCGACGCCATTTCAATCGGGTTCAACGGCGGTCCACCAGCCTGATCCTGCAATGTTGCCGCACGACCATCCCAGAACTGCTCAACGTTAAATACTg              >  2:547468/1‑151 (MQ=255)
                                                                                                                                   gCGTTTTAAGCTGCGAATCTTTTTCCAGCTTAGCAATAATTTCGTCCCAGGATTTCGACGCCATTTCAATCGGGTTCAACGGCGGTCCACCAGCCTGATCCTGCAATGTTGCCGCACGACCATCCCAGAACTGCTCAACGTTAAATACTg              >  2:33970/1‑150 (MQ=255)
                                                                                                                                   gCGTTTTAAGCTGCGAATCTTTTTCCAGCTTAGCAATAATTTCGTCCCAGGATTTCGACGCCATTTCAATCGGGTTCAACGGCGGTCCACCAGCCTGATCCTGCAATGTTGCCGCACGACCATCCCAGAACTGCTCAACGTTAAATACTg              >  1:31403/1‑150 (MQ=255)
                                                                                                                                    cGTTTTAAGCTGCGAATCTTTTTCCAGCTTAGCAATAATTTCGTCCCAGGATTTCGACGCCATTTCAATCGGGTTCAACGGCGGTCCACCAGCCTGATCCTGCAATGTTGCCGCACGACCATCCCAGAACTGCTCAACGTTAAATACTg              >  2:1013573/1‑149 (MQ=255)
                                                                                                                                         tAAGCTGCGAATCTTTTTCCAGCTTAGCAATAATTTCGTCCCAGGATTTCGACGCCATTTCAATCGGGTTCAACGGCGGTCCACCAGCCTGATCCTGCAATGTTGCCGCACGACCATCCCAGAACTGCTCAACGTTAAATACTGAGTTaa        <  1:51292/150‑1 (MQ=255)
                                                                                                                                          aaGCTGCGAATCTTTTTCCAGCTTAGCAATAATTTCGTCCCAGGATTTCGACGCCATTTCAATCGGGTTCAACGGCGGTCCACCAGCCTGATCCTGCAATGTTGCCGCACGACCATCCCAGAACTGCTCAACGTTAAATACTGAGTTAAAt      <  2:767470/151‑1 (MQ=255)
                                                                                                                                          aaGCTGCGAATCTTTTTCCAGCTTAGCAATAATTTCGTCCCAGGATTTCGACGCCATTTCAATCGGGTTCAACGGCGGTCCACCAGCCTGATCCTGCAATGTTGCCGCACGACCATCCCAGAACTGCTCAACGTTAAATACTGAGTTAAAt      >  2:1022814/1‑151 (MQ=255)
                                                                                                                                           aGCTGCGAATCTTTTTCCAGCTTAGCAATAATTTCGTCCCAGGATTTCGACGCCATTTCAATCGGGTTCAACGGCGGTCCACCAGCCTGATCCTGCAATGTTGCCGCACGACCATCCCAGAACTGCTCAACGTTAAATACTGAGTTAAAt      >  2:1054071/1‑150 (MQ=255)
                                                                                                                                               gCGAATCTTTTTCCAGCTTAGCAATAATTTCGTCCCAGGATTTCGACGCCATTTCAATCGGGTTCAACGGCGGTCCACCAGCCTGATCCTGCAATGTTGCCGCACGACCATCCCAGAACTGCTCAACGTTAAATACTGAGTTAAATACCg  >  1:1005617/1‑150 (MQ=255)
                                                                                                                                               gCGAATCTTTCTCCAGCTTAGCAATAATTTCGTCCCAGGATTTCGACGCCATTTCAATCGGGTTCAACGGCGGTCCACCAGCCTGATCCTGCAATGTTGCCGCACGACCATCCCAGAACTGCTCAACGTTAAATACTGAGTTAAATACCg  >  2:1131027/1‑150 (MQ=255)
                                                                                                                                                  |                                                                                                                                                  
CAGCGCATTTTCATCTCCGCGCAACCATTTATCAAATGGGGAATCCGGCGTAATTAATGTTTTCTCAAATTCAGCAATGGCATCAGTAATATTTTCGCCACTGAAACCTTGCGGATAGACTTCGAGGAACTGCGTTTTAAGCTGCGGATCTTTTTCCAGCTTAGCAATAATTTCGTCCCAGGATTTCGACGCCATTTCAATCGGGTTCAACGGCGGTCCACCAGCCTGATCCTGCAATGTTGCCGCACGACCATCCCAGAACTGCTCAACGTTAAATACTGAGTTAAATACCG  >  NC_000913/3668184‑3668476

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A