Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A5 F50 I1 R1 141 76.7 2402765 98.4% 2364320 150.1

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,352,500 (A)8→7 intergenic (+143/‑84) yjdJ → / → ghoS GNAT family putative N‑acetyltransferase/antitoxin of GhoTS toxin‑antitoxin pair; endonuclease for ghoT mRNA

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,352,4930A.100.0% 281.7 / NA 59intergenic (+136/‑91)yjdJ/ghoSGNAT family putative N‑acetyltransferase/antitoxin of GhoTS toxin‑antitoxin pair; endonuclease for ghoT mRNA
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base . (26/33);  total (26/33)

ATATTCGCAGTTGATGGGAGAGTACAGAGTCACGATATTTTTCATTCTCTCCGCGATGTGATGCAGGAGAGCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATCCCCTTTACTGAGCAAAAAAAAGAATATCTCCTATATGAGAATCATCAATCGGGGTTAATAAGTTTTGCGTCCCCAGAGCGTTTAATATTGATAGGAGTCATATTATGGAAGGTAAAAACAAGTTCAATACTTATGTTGTTTCTTTTGATTATCCATCAT  >  NC_000913/4352344‑4352638
                                                                                                                                                     |                                                                                                                                                 
atatTCGCAGTTGATGGGAGAGTACAGAGTCACGATATTTTTCATTCTCTCCGCGATGTGATGCAGGAGAGCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATCCCCTTTACTGAGCa                                                                                                                                                   >  2:416339/1‑150 (MQ=255)
  atTCGCAGTTGATGGGAGAGTACAGAGTCACGATATTTTTCATTCTCTCCGCGATGTGATGCAGGAGAGCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATCCCCTTTACTGAGCaaaa                                                                                                                                                <  1:94398/151‑1 (MQ=255)
  atTCGCAGTTGATGGGAGAGTACAGAGTCACGATATTTTTCATTCTCTCCGCGATGTGATGCAGGAGAGCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATCCCCTTTACTGAGCaaa                                                                                                                                                 >  2:426032/1‑150 (MQ=255)
        aGTTGATGGGAGAGTACAGAGTCACGATATTTTTCATTCTCTCCGCGATGTGATGCAGGAGAGCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATCCCCTTTACTGAGCaaaaaaaga                                                                                                                                           >  1:87700/1‑148 (MQ=255)
         gTTGATGGGAGAGTACAGAGTCACGATATTTTTCATTCTCTCCGCGATGTGATGCAGGAGAGCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATCCCCTTTACTGAGCaaaaaaagaat                                                                                                                                         <  1:9207/151‑5 (MQ=255)
          ttGATGGGAGAGTACAGAGTCACGATATTTTTCATTCTCTCCGCGATGTGATGCAGGAGAGCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATCCCCTTTACTGAGCaaaaaaagaat                                                                                                                                         >  2:1077667/1‑146 (MQ=255)
           tGATGGGAGAGTACAGAGTCACGATATTTTTCATTCTCTCCGCGATGTGATGCAGGAGAGCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAGAatat                                                                                                                                      >  1:898285/1‑151 (MQ=255)
            gATGGGAGAGTACAGAGTCACGATATTTTTCATTCTCTCCGCGATGTGATGCAGGAGAGCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAGAatat                                                                                                                                      <  1:647748/150‑1 (MQ=255)
             aTGGGAGAGTACAGAGTCACGATATTTTTCATTCTCTCCGCGATGTGATGCAGGAGAGCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAGAATAtct                                                                                                                                    <  1:715305/151‑1 (MQ=255)
             aTGGGAGAGTACAGAGTCACGATATTTTTCATTCTCTCCGCGATGTGATGCAGGAGAGCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAGAATAtct                                                                                                                                    <  1:739313/151‑1 (MQ=255)
                ggAGAGTACAGAGTCACGATATTTTTCATTCTCTCCGCGATGTGATGCAGGAGAGCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAGAATATCTCCt                                                                                                                                 <  2:458273/151‑1 (MQ=255)
                ggAGAGTACAGAGTCACGATATTTTTCATTCTCTCCGCGATGTGATGCAGGAGAGCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAGAATATCTCCt                                                                                                                                 <  1:678487/151‑1 (MQ=255)
                 gagaGTACAGAGTCACGATATTTTTCATTCTCTCCGCGATGTGATGCAGGAGAGCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAGAATATCTCCta                                                                                                                                <  2:647588/151‑1 (MQ=255)
                 gagaGTACAGAGTCACGATATTTTTCATTCTCTCCGCGATGTGATGCAGGAGAGCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAGAATATCTCCta                                                                                                                                <  2:627176/151‑1 (MQ=255)
                 gagaGTACAGAGTCACGATATTTTTCATTCTCTCCGCGATGTGATGCAGGAGAGCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAGAATATCTCCt                                                                                                                                 >  2:728304/1‑150 (MQ=255)
                 gagaGTACAGAGTCACGATATTTTTCATTCTCTCCGCGATGTGATGCAGGAGAGCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAGAATATCTCCt                                                                                                                                 >  1:1044714/1‑150 (MQ=255)
                     gTACAGAGTCACGATATTTTTCATTCTCTCCGCGATGTGATGCAGGAGAGCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAGAATATCTCCTATATg                                                                                                                            <  2:561437/151‑1 (MQ=255)
                        cAGAGTCACGATATTTTTCATTCTCTCCGCGATGTGATGCAGGAGAGCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAGAATATCTCCTATATg                                                                                                                            >  2:988359/1‑148 (MQ=255)
                           agTCACGATATTTTTCATTCTCTCCGCGATGTGATGCAGGAGAGAATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAGAATATCTCCTATATTAGAatc                                                                                                                      <  1:1192611/151‑1 (MQ=255)
                               aCGATATTTTTCATTCTCTCCGCGATGTGATGCAGGAGAGCATCTGAAGGGGAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAGAATATCTCCTATATGAGAAtcatca                                                                                                                  <  2:995720/151‑1 (MQ=255)
                                  atatTTTTCATTCTCTCCGCGATGTGATGCAGGAGAGCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAGAATATCTCCTATATGAGAATCATCAATc                                                                                                               >  1:197069/1‑151 (MQ=255)
                                         tCATTCTCTCCGCGATGTGATGCAGGAGAGCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAGAATATCTCCTATATGAGAATCATCAATCGGGGtt                                                                                                         >  2:232304/1‑150 (MQ=255)
                                          cATTCTCTCCGCGATGTGATGCAGGAGAGCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAGAATATCTCCTATATGAGAATCATCAATCGGGGTtaa                                                                                                       <  2:275967/151‑1 (MQ=255)
                                           aTTCTCTCCGCGATGTGATGCAGGAGAGCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAGAATATCTCCTATATGAGAATCATCAATCGGGGTtaat                                                                                                      >  2:109030/1‑151 (MQ=255)
                                               tctcCGCGATGTGATGCAGGAGAGCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAGAATATCTCCTATATGAGAATCATCAATCGGGGTTAATAAGt                                                                                                  >  1:930710/1‑151 (MQ=255)
                                                ctcCGCGATGTGATGCAGGAGAGCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAGAATATCTCCTATATGAGAATCATCAATCGGGGTTAATAAGtt                                                                                                 >  1:381368/1‑151 (MQ=255)
                                                 tcCGCGATGTGATGCAGGAGAGCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAGAATATCTCCTATATGAGAATCATCAATCGGGGTTAATAAGttt                                                                                                >  2:1018959/1‑151 (MQ=255)
                                                   cgcgATGTGATGCAGGAGAGCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAGAATATCTCCTATATGAGAATCATCAATCGGGGTTAATAAGTTTTg                                                                                              <  1:75743/151‑1 (MQ=255)
                                                    gcgATGTGATGCAGGAGAGCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAGAATATCTCCTATATGAGAATCATCAATCGGGGTTAATAAGTTTTGc                                                                                             <  1:728294/151‑1 (MQ=255)
                                                    gcgATGTGATGCAGGAGAGCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAGAATATCTCCTATATGAGAATCATCAATCGGGGTTAATAAGTTTTGc                                                                                             <  2:498964/151‑1 (MQ=255)
                                                    gcgATGTGATGCAGGAGAGCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAGAATATCTCCTATATGAGAATCATCAATCGGGGTTAATAAGTTTTGc                                                                                             <  1:633521/151‑1 (MQ=255)
                                                      gATGTGATGCAGGAGAGCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAGAATATCTCCTATATGAGAATCATCAATCGGGGTTAATAAGTTTTGCGt                                                                                           <  2:32587/151‑1 (MQ=255)
                                                         gtgATGCAGGAGAGCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAGAATATCTCCTATATGAGAATCATCAATCGGGGTTAATAAGTTTTGCGTcc                                                                                         <  2:1045628/150‑1 (MQ=255)
                                                            aTGCAGGAGAGCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAGAATATCTCCTATATGAGAATCATCAATCGGGGTTAATAAGTTTTGCGTcccc                                                                                       >  1:834146/1‑149 (MQ=255)
                                                              gCAGGAGAGCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAGAATATCTCCTATATGAGAATCATCAATCGGGGTTAATAAGTTTTGCGTCCCCagag                                                                                   <  1:187204/151‑1 (MQ=255)
                                                                   agagCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAGAATATCTCCTATATGAGAATCATCAATCGGGGTTAATAAGTTTTGCGTCCCCAGAGCGttt                                                                              <  2:430726/151‑1 (MQ=255)
                                                                            gAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAGAATATCTCCTATATGAGAATCATCAATCGGGGTTAATAAGTTTTGCGTCCCCAGAGCGTTTAATATTGAt                                                                     >  2:373285/1‑151 (MQ=255)
                                                                             aaGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAGAATATCTCCTATATGAGAATCATCAATCGGGGTTAATAAGTTTTGCGTCCCCAGAGCGTTTAATAtt                                                                        <  1:88748/147‑1 (MQ=255)
                                                                             aaGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAGAATATCTCCTATATGAGAATCATCAATCGGGGTTAATAAGTTTTGCGTCCCCAGAGCGTTTAATATTGAt                                                                     <  2:630699/150‑1 (MQ=255)
                                                                             aaGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAGAATATCTCCTATATGAGAATCATCAATCGGGGTTAATAAGTTTTGCGTCCCCAGAGCGTTTAATATTGAt                                                                     >  1:920678/1‑150 (MQ=255)
                                                                                ggTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAGAATATCTCCTATATGAGAATCATCAATCGGGGTTAATAAGTTTTGCGTCCCCAGAGCGTTTAATATTGATAGGa                                                                 <  1:691574/151‑1 (MQ=255)
                                                                                 gTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAGAATATCTCCTATATGAGAATCATCAATCGGGGTTAATAAGTTTTGCGTCCCCAGAGCGTTTAATATTGATAgg                                                                  >  2:785536/1‑149 (MQ=255)
                                                                                   aGGGGGATGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAGAATATCTCCTATATGAGAATCATCAATCGGGGTTAATAAGTTTTGCGTCCCCAGAGCGTTTAATATTGATAGGAGTc                                                              >  2:149409/1‑151 (MQ=255)
                                                                                     ggggATGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAGAATATCTCCTATATGAGAATCATCAATCGGGGTTAATAAGTTTTGCGTCCCCAGAGCGTTTAATATTGATAGGAGTCat                                                            <  2:319892/151‑1 (MQ=255)
                                                                                     ggggATGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAGAATATCTCCTATATGAGAATCATCAATCGGGGTTAATAAGTTTTGCGTCCCCAGAGCGTTTAATATTGATAGGAGTCat                                                            >  2:893515/1‑151 (MQ=255)
                                                                                        gATGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAGAATATCTCCTATATGAGAATCATCAATCGGGGTTAATAAGTTTTGCGTCCCCAGAGCGTTTAATATTGATAGGAGTCAtatt                                                         <  1:975921/151‑1 (MQ=255)
                                                                                           gCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAGAATATCTCCTATATGAGAATCATCAATCGGGGTTAATAAGTTTTGCGTCCCCAGAGCGTTTAATATTGATAGGAGTCATATTATg                                                      >  2:604399/1‑151 (MQ=255)
                                                                                                 aGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAGAATATCTCCTATATGAGAATCATCAATCGGGGTTAATAAGTTTTGCGTCCCCAGAGCGTTTAATATTGATAGGAGTCATATTATGGAAGGt                                                <  1:135282/151‑1 (MQ=255)
                                                                                                              agCGCGTTTTTTTGTCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAGAATATCTCCTATATGATAATCATCAATCGGGGTTAATAAGTTTTGCGTCCCCAGAGCGTTTAATATTGATAGGAGTCATATTATGGAAGGTAAAAACAAGTTCa                                   <  1:439266/151‑1 (MQ=255)
                                                                                                              agCGCGTTTTTTTGTCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAGAATATCTCCTATATGAGAATCATCAATCGGGGTTAATAAGTTTTGCGTCCCCAGAGCGTTTAATATTGATAGGAGTCATATTATGGAAGGTAAAAACAAGTTc                                    >  2:1122886/1‑150 (MQ=255)
                                                                                                              agCGCGTTTTTTTGTCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAGAATATCTCCTATATGAGAATCATCAATCGGGGTTAATAAGTTTTGCGTCCCCAGAGCGTTTAATATTGATAGGAGTCATATTATGGAAGGTAAAAACAAGTTc                                    >  2:1008801/1‑150 (MQ=255)
                                                                                                                cgcgTTTTTTTGTCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAGAATATCTCCTATATGAGAATCATCAATCGGGGTTAATAAGTTTTGCGTCCCCAGAGCGTTTAATATTGATAGGAGTCATATTATGGAAGGTAAAAACAAGTTCAAt                                 <  1:293826/151‑1 (MQ=255)
                                                                                                                        tttGTCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAGAATATCTCCTATATGAGAATCATCAATCGGGGTTAATAAGTTTTGCGTCCCCAGAGCGTTTAATATTGATAGGAGTCATATTATGGAAGGTAAAAACAAGTTCAATACTTAtgt                         >  1:481591/1‑151 (MQ=255)
                                                                                                                          tGTCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAGAATATCTCCTATATGAGAATCATCAATCGGGGTTAATAAGTTTTGCGTCCCCa                                                                                      <  1:211927/88‑1 (MQ=255)
                                                                                                                          tGTCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAGAATATCTCCTATATGAGAATCATCAATCGGGGTTAATAAGTTTTGCGTCCCCa                                                                                      >  2:211930/1‑88 (MQ=255)
                                                                                                                           gTCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAGAATATCTCCTATATGAGAATCATCAATCGGGGTTAATAAGTTTTGCGTCCCCAGAGCGTTTAATATTGATAGGAGTCATATTATGGAAGGTAAAAACAAGTTCAATACTTAtgttgt                      <  1:232302/151‑1 (MQ=255)
                                                                                                                            tCCCAAGTCATCCCCTTTACTGAGC‑AAAAAAAGAATATCTCCTATATGAGAATCATCAATCGGGGTTAATAAGTTTTGCGTCCCCAGAGCGTTTAATATTGATAGGAGTCATATTATGGAAGGTAAAAACAAGTTCAATACTTAtgtt                        <  2:867509/148‑1 (MQ=255)
                                                                                                                               cAAGTCATCCCCTTTACTGAGC‑AAAAAAAGAATATCTCCTATATGAGAATCATCAATCGGGGTTAATAAGTTTTGCGTCCCCAGAGCGTTTAATATTGATAGGAGTCATATTATGGAAGGT‑AAAACAAGTTCAATTCTTATGTTGTTTCtt                 >  2:1144093/1‑151 (MQ=255)
                                                                                                                                    cATCCCCTTTACTGAGC‑AAAAAAAGAATATCTCCTATATGAGAATCATCAATCGGGGTTAATAAGTTTTGCGTCCCCAGAGCGTTTAATATTGATAGGAGTCATATTATGGAAGGTAAAAACAAGTTCAATACTTATGTTGTTTCTTTTGa             <  2:930728/151‑1 (MQ=255)
                                                                                                                                     aTCCCCTTTACTGAGC‑AAAAAAAGAATATCTCCTATATGAGAATCATCAATCGGGGTTAATAAGTTTTGCGTCCCCAGAGCGTTTAATATTGATAGGAGTCATATTATGGAAGGTAAAAACAAGTTCAATACTTATGTTGTTTCTTTTGAt            >  1:655543/1‑151 (MQ=255)
                                                                                                                                        cccTTTACTGAGC‑AAAAAAAGAATATCTCCTATATGAGAATCATCAATCGGGGTTAATAAGTTTTGCGTCCCCAGAGCGTTTAATATTGATAGGAGTCATATTATGGAAGGTAAAAACAAGTTCAATACTTATGTTGTTTCTTTTGATTAt         >  2:849619/1‑151 (MQ=255)
                                                                                                                                           tttACTGAGC‑AAAAAAAGAATATCTCCTATATGAGAATCATCAATCGGGGTTAATAAGTTTTGCGTCCCCAGAGCGTTTAATATTGATAGGAGTCATATTATGGAAGGTAAAAACAAGTTCAATACTTATGTTGTTTCTTTTGATTATcc       >  2:1044486/1‑150 (MQ=255)
                                                                                                                                              aCTGAGC‑AAAAAAAGAATATCTCCTATATGAGAATCATCAATCGGGGTTAATAAGTTTTGCGTCCCCAGAGCGTTTAATATTGATAGGAGTCATATTATGGAAGGTAAAAACAAGTTCAATACTTATGTTGTTTCTTTTGATTATCcatca   <  2:821296/151‑1 (MQ=255)
                                                                                                                                              aCTGAGC‑AAAAAAAGAATATCTCCTATATGAGAATCATCAATCGGGGTTAATAAGTTTTGCGTCCCCAGAGCGTTTAATATTGATAGGAGTCATATTATGGAAGGTAAAAACAAGTTCAATACTTATGTTGTTTCTTTTGATTATCcatca   <  2:928376/151‑1 (MQ=255)
                                                                                                                                               cTGAGC‑AAAAAAAGAATATCTCCTATATGAGAATCATCAATCGGGGTTAATAAGTTTTGCGTCCCCAGAGCGTTTAATATTGATAGGAGTCATATTATGGAAGGTAAAAACAAGTTCAATACTTATGTTGTTTCTTTTGATTATCcatcat  >  2:1164867/1‑151 (MQ=255)
                                                                                                                                                     |                                                                                                                                                 
ATATTCGCAGTTGATGGGAGAGTACAGAGTCACGATATTTTTCATTCTCTCCGCGATGTGATGCAGGAGAGCATCTGAAGGGTAGGGGGATGCACAAAGAATGGGCAGAGAGCGCGTTTTTTTGTCCCAAGTCATCCCCTTTACTGAGCAAAAAAAAGAATATCTCCTATATGAGAATCATCAATCGGGGTTAATAAGTTTTGCGTCCCCAGAGCGTTTAATATTGATAGGAGTCATATTATGGAAGGTAAAAACAAGTTCAATACTTATGTTGTTTCTTTTGATTATCCATCAT  >  NC_000913/4352344‑4352638

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A