Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F50 I1 R1
|
141 |
76.7 |
2402765 |
98.4% |
2364320 |
150.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,500,381 |
T→C |
pseudogene (154/942 nt) |
yjgX ← |
pseudogene fragment |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,500,381 | 0 | T | C | 100.0%
| 264.5
/ NA
| 68 | pseudogene (154/942 nt) | yjgX | pseudogene fragment |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (28/40); total (28/40) |
TGCGTGTGTCATGCTCCCCCAGTTTTCCTTGATTGGATATCCACCATGTGCTGTATCCTGCTTTTGCTGCCAGCGCCACCACATTGTTGCCGGAATCAGGGTTCTGCTCATAGTCATAAATCAGTGTCCGGCTCAGGGAAGACACTGTACTGGAGGCTGTCGAGGTATAATCGTCAATAAATAAACCGGGTGCCGTATTCAGCCACGGTGTGGTTGGTACGGGATAGTCATACACTGACATATAATCCCTGCGCACACTCTCACCAGTGACAATAACAATCGTATCATATAA > NC_000913/4500234‑4500525
|
tGCGTGTGTCATGCTCCCCCAGTTTTCCTTGATTGGATATCCACCATGTGCTGTATCCTGCTTTTGCTGCCAGCGCCACCACATTGTTGCCGGAATCAGGGTTCTGCTCATAGTCATAAATCAGTGTCCGGCTCAGGGAAGACACTGCACt > 1:611781/1‑151 (MQ=255)
gCGTGTGTCATGCTCCCCCAGTTTTCCTTGATTGGATATCCACCATGTGCTGTATCCTGCTTTTGCTGCCAGCGCCACCACATTGTTGCCGGAATCAGGGTTCTGCTCATAGTCATAAATCAGTGTCCGGCTCAGGGAAGAcactgcactg > 2:638522/1‑151 (MQ=255)
gCGTGTGTCATGCTCCCCCAGTTTTCCTTGATTGGATATCCACCATGTGCTGTATCCTGCTTTTGCTGCCAGCGCCACCACATTGTTGCCGGAATCAGGGTTCTGCTCATAGTCATAAATCAGTGTCCGGCTCAGGGAAGAcactgcactg < 2:413548/151‑1 (MQ=255)
cATGCTCCCCCAGTTTTCCTTGATTGGATATCCACCATGTGCTGTATCCTGCTTTTGCTGCCAGCGCCACCACATTGTTGCCGGAATCAGGGTTCTGCTCATAGTCATAAATCAGTGTCCGGCTCAGGGAAGACACTGCACTGGAGGCTg < 1:1108135/150‑1 (MQ=255)
cATGCTCCCCCAGTTTTCCTTGATTGGATATCCACCATGTGCTGTATCCTGCTTTTGCTGCCAGCGCCACCACATTGTTGCCGGAATCAGGGTTCTGCTCATAGTCATAAATCAGTGTCCGGCTCAGGGAAGACACTGCACTGGAGGCTg < 1:1111008/150‑1 (MQ=255)
cATGCTCCCCCAGTTTTCCTTGATTGGATATCCACCATGTGCTGTATCCTGCTTTTGCTGCCAGCGCCACCACATTGTTGCCGGAATCAGGGTTCTGCTCATAGTCATAAATCAGTGTCCGGCTCAGGGAAGACACTGCACTGGAGGCTGt < 2:251994/151‑1 (MQ=255)
cATGCTCCCCCAGTTTTCCTTGATTGGATATCCACCATGTGCTGTATCCTGCTTTTGCTGCCAGCGCCACCACATTGTTGCCGGAATCAGGGTTCTGCACATAGTCATAAATCAGTGTCCGGCTCAGGGAAGACACTGCACTGGAGGCTg < 2:648169/150‑1 (MQ=255)
aTGCTCCCCCAGTTTTCCTTGATTGGATATCCACCATGTGCTGTATCCTGCTTTTGCTGCCAGCGCCACCACATTGTTGCCGGAATCAGGGTTCTGCTCATAGTCATAAATCAGTGTCCGGCTCAGGGAAGACACTGCACTGGAGGCTGTc < 2:1059933/151‑1 (MQ=255)
cTCCCCCAGTTTTCCTTGATTGGATATCCACCATGTGCTGTATCCTGCTTTTGCTGCCAGCGCCACCACATTGTTGCCGGAATCAGGGTTCTGCTCATAGTCATAAATCAGTGTCCGGCTCAGGGAAGACACTGCACTGGAGGCTGTCg > 2:148661/1‑149 (MQ=255)
tCCCCCAGTTTTCCTTGATTGGATATCCACCATGTGCTGTATCCTGCTTTTGCTGCCAGCGCCACCACATTGTTGCCGGAATCAGGGTTCTGCTCATAGTCATAAATCAGTGTCCGGCTCAGGGAAGACACTGCACTGGAGGCTGTCGAgg > 1:581822/1‑151 (MQ=255)
cccccAGTTTTCCTTGATTGGATATCCACCATGTGCTGTATCCTGCTTTTGCTGCCAGCGCCACCACATTGTTGCCGGAATCAGGGTTCTGCTCATAGTCATAAATCAGTGTCCGGCTCAGGGAAGACACTGCACTGGAGGCTGTCGAGGt < 2:371560/151‑1 (MQ=255)
cccccAGTTTTCCTTGATTGGATATCCACCATGTGCTGTATCCTGCTTTTGCTGCCAGCGCCACCACATTGTTGCCGGAATCAGGGTTCTGCTCATAGTCATAAATCAGTGTCCGGCTCAGGGAAGACACTGCACTGGAGGCTGTCGAGGt > 1:568697/1‑151 (MQ=255)
cccAGTTTTCCTTGATTGGATATCCACCATGTGCTGTATCCTGCTTTTGCTGCCAGCGCCACCACATTGTTGCCGGAATCAGGGTTCTGCTCATAGTCATAAATCAGTGTCCGGCTCAGGGAAGACACTGCACTGGAGGCTGTCGAGGtat > 1:315563/1‑151 (MQ=255)
ccAGTTTTCCTTGATTGGATATCCACCATGTGCTGTATCCTGCTTTTGCTGCCAGCGCCACCACATTGTTGCCGGAATCAGGGTTCTGCTCATAGTCATAAATCAGTGTCCGGCTCAGGGAAGACACTGCACTGGAGGCTGTCGAGGtata < 1:1196126/151‑1 (MQ=255)
gTTTTCCTTGATTGGATATCCACCATGTGCTGTATCCTGCTTTTGCTGCCAGCGCCACCACATTGTTGCCGGAATCAGGGTTCTGCTCATAGTCATAAATCAGTGTCCGGCTCAGGGAAGACACTGCACTGGAGGCTGTCGAGGTATAATc < 2:196341/151‑1 (MQ=255)
ttCCTTGATTGGATATCCACCATGTGCTGTATCCTGCTTTTGCTGCCAGCGCCACCACATTGTTGCCGGAATCAGGGTTCTGCTCATAGTCATAAATCAGTGTCCGGCTCAGGGAAGACACTGCACTGGAGGCTGTCGAGGTATAATCGt < 1:963060/150‑1 (MQ=255)
ttCCTTGATTGGATATCCACCATGTGCTGTATCCTGCTTTTGCTGCCAGCGCCACCACATTGTTGCCGGAATCAGGGTTCTGCTCATAGTCATAAATCAGTGTCCGGCTCAGGGAAGACACTGCACTGGAGGCTGTCGAGGTATAATCGTc > 2:1128465/1‑151 (MQ=255)
tCCTTGATTGGATATCCACCATGTGCTGTATCCTGCTTTTGCTGCCAGCGCCACCACATTGTTGCCGGAATCAGGGTTCTGCTCATAGTCATAAATCAGTGTCCGGCTCAGGGAAGACACTGCACTGGAGGCTGTCGAGGTATAATCGTc < 1:1059687/150‑1 (MQ=255)
ccTTGATTGGATATCCACCATGTGCTGTATCCTGCTTTTGCTGCCAGCGCCACCACATTGTTGCCGGAATCAGGGTTCTGCTCATAGTCATAAATCAGTGTCCGGCTCAGGGAAGACACTGCACTGGAGGCTGTCGAGGTATAATCGTCa > 1:181982/1‑150 (MQ=255)
tGATTGGATATCCACCATGTGCTGTATCCTGCTTTTGCTGCCAGCGCCACCACATTGTTGCCGGAATCAGGGTTCTGCTCATAGTCATAAATCAGTGTCCGGCTCAGGGAAGACACTGCACTGGAGGCTGTCGAGGTATAATCGTCaata < 1:1199866/150‑1 (MQ=255)
ttGGATATCCACCATGTGCTGTATCCTGCTTTTGCTGCCAGCGCCACCACATTGTTGCCGGAATCAGGGTTCTGCTCATAGTCATAAATCAGTGTCCGGCTCAGGGAAGACACTGCACTGGAGGCTGTCGAGGTATAATCGTCaataaat > 1:15290/1‑150 (MQ=255)
ggATATCCACCATGTGCTGTATCCTGCTTTTGCTGCCAGCGCCACCACATTGTTGCCGGAATCAGGGATCTGCTCATAGTCATAAATCAGTGTCCGGCTCAGGGAAGACACTGCACTGGAGGCTGTCGAGGTATAATCGTCAataaataa > 2:715973/1‑150 (MQ=255)
ggATATCCACCATGTGCTGTATCCTGCTTTTGCTGCCAGCGCCACCACATTGTTGCCGGAATCAAGGTTCTGCTCATAGTCATAAATCAGTGTCCGGCTCAGGGAAGACACTGCACTGGAGGCTGTCGAGGTATAATCGTCAataaataa > 1:1047394/1‑150 (MQ=255)
accaTGTGCTGTATCCTGCTTTTGCTGCCAGCGCCACCACATTGTTGCCGGAATCAGGGTTCTGCTCATAGTCATAAATCAGTGTCCGGCTCAGGGAAGACACTGCACTGGAGGCTGTCGAGGTATAATCGTCAATAAATAAACCGGGTGc > 1:562291/1‑151 (MQ=255)
gtgCTGTATCCTGCTTTTGCTGCCAGCGCCACCACATTGTTGCCGGAATCAGGGTTCTGCTCATAGTCATAAATCAGTGTCCGGCTCAGGGAAGACACTGCACTGGAGGCTGTCGAGGTATAATCGTCAATAAATAAACCGGGTGCCGTAt > 1:1059324/1‑151 (MQ=255)
gTATCCTGCTTTTGCTGCCAGCGCCACCACATTGTTGCCGGAATCAGGGTTCTGCTCATAGTCATAAATCAGTGTCCGGCTCAGGGAAGACACTGCACTGGAGGCTGTCGAGGTATAATCGTCAATAAATAAACCGGGTGCCGTATTCAGc < 2:1129677/151‑1 (MQ=255)
gTATCCTGCTTTTGCTGCCAGCGCCACCACATTGTTGCCGGAATCAGGGTTCTGCTCATAGTCAGAAATCAGTGTCCGGCTCAGGGAAGACACTGCACTGGAGGCTGTCGAGGTATAATCGTCAATAAATAAACCGGGTGCAGTATTCa < 1:888089/149‑1 (MQ=255)
ccTGCTTTTGCTGCCAGCGCCACCACATTGTTGCCGGAATCAGGGTTCTGCTCATAGTCATAAATCAGTGTCCGGCTCAGGGAAGACACTGCACTGGAGGCTGTCGAGGTATAATCGTCAATAAATAAACCGGGTGCCGTATTCAGCCAc < 2:562895/150‑1 (MQ=255)
ccTGCTTTTGCTGCCAGCGCCACCACATTGTTGCCGGAATCAGGGTTCTGCTCATAGTCATAAATCAGTGTCCGGCTCAGGGAAGACACTGCACTGGAGGCTGTCGAGGTATAATCGTCAATAAATAAACCGGGTGCCGTATTCAGCCACg < 1:1023102/151‑1 (MQ=255)
cTGCTTTTGCTGCCAGCGCCACCACATTGTTGCCGGAATCAGGGTTCTGCTCATAGTCATAAATCAGTGTCCGGCTCAGGGAAGACACTGCACTGGAGGCTGTCGAGGTATAATCGTCAATAAATAAACCGGGTGCCGTATTCAGCCa > 2:1035739/1‑148 (MQ=255)
cTGCTTTTGCTGCCAGCGCCACCACATTGTTGCCGGAATCAGGGTTCTGCTCATAGTCATAAATCAGTGTCCGGCTCAGGGAAGACACTGCACTGGAGGCTGTCGAGGTATAATCGTCAATAAATAAACCGGGTGCCGTATTCAGCCa < 1:1035714/148‑1 (MQ=255)
tGCTTTTGCTGCCAGCGCCACCACATTGTTGCCGGAATCAGGGTTCTGCTCATAGTCATAAATCAGTGTCCGGCTCAGGGAAGACACTGCACTGGAGGCTGTCGAGGTATAATCGTCAATAAATAAACCg < 1:1044200/130‑1 (MQ=255)
tGCTTTTGCTGCCAGCGCCACCACATTGTTGCCGGAATCAGGGTTCTGCTCATAGTCATAAATCAGTGTCCGGCTCAGGGAAGACACTGCACTGGAGGCTGTCGAGGTATAATCGTCAATAAATAAACCg > 2:1044225/1‑130 (MQ=255)
tGCTTTTGCTGCCAGCGCCACCACATTGTTGCCGGAATCAGGGTTCTGCTCATAGTCATAAATCAGTGTCCGGCTCAGGGAAGACACTGCACTGGAGGCTGTCGAGGTATAATCGTCAATAAATAAACCGGGTGCCGTATTCAGCCACGgt > 1:848932/1‑151 (MQ=255)
gCTTTTGCTGCCAGCGCCACCACATTGTTGCCGGAATCAGGGTTCTGCTCATAGTCATAAATCAGTGTCCGGCTCAGGGAAGACACTGCACTGGAGGCTGTCGAGGTATAATCGTCAATAAATAAACCGGGTGCCGTATTCAGCCACgg < 2:225131/149‑1 (MQ=255)
gCTTTTGCTGCCAGCGCCACCACATTGTTGCCGGAATCAGGGTTCTGCTCATAGTCATAAATCAGTGTCCGGCTCAGGGAAGACACTGCACTGGAGGCTGTCGAGGTATAATCGTCAATAAATAAACCGGGTGCCGTATTCAGCCACgg < 1:598474/149‑1 (MQ=255)
gCTTTTGCTGCCAGCGCCACCACATTGTTGCCGGAATCAGGGTTCTGCTCATAGTCATAAATCAGTGTCCGGCTCAGGGAAGACACTGCACTGGAGGCTGTCGAGGTATAATCGTCAATAAATAAACCGGGTGCCGTATTCAGCCACGgtg < 2:1058064/151‑1 (MQ=255)
tgcCAGCGCCACCACATTGTTGCCGGAATCAGGGTTCTGCTCATAGTCATAAATCAGTGTCCGGCTCAGGGAAGACACTGCACTGGAGGCTGTCGAGGTATAATCGTCAATAAATAAACCGGGTGCCGTATTCAGCCATGGTGtggttggt > 2:771926/1‑151 (MQ=255)
aGCGCCACCACATTGTTGCCGGAATCAGGGTTCTGCTCATAGTCATAAATCAGTGTCCGGCTCAGGGAAGACACTGCACTGGAGGCTGTCGAGGTATAATCGTCAATAAATAAACCGGGTGCCGTATTCAGCCACGGTGTGGTTGGTACgg < 1:447037/151‑1 (MQ=255)
gcCACCACATTGTTGCCGGAATCAGGGTTCTGCTCATAGTCATAAATCAGTGTCCGGCTCAGGGAAGACACTGCACTGGAGGCTGTCGAGGTATAATCGTCAATAAATAAACCGGGTGCCGTATTCAGCCACGGTGTGGTTGGTACGGGAt < 1:611044/151‑1 (MQ=255)
accacATTGTTGCCGGAATCAGGGTTCTGCTCATAGTCATAAATCAGTGTCCGGCTCAGGGAAGACACTGCACTGGAGGCTGTCGAGGTATAATCGTCAATAAATAAACCGGGTGCCGTATTCAGCCACGGTGTGGTTGGTACGGGATAg > 2:1158891/1‑150 (MQ=255)
accacATTGTTGCCGGAATCAGGGTTCTGCTCATAGTCATAAATCAGTGTCCGGCTCAGGGAAGACACTGCACTGGAGGCTGTCGAGGTATAATCGTCAATAAATAAACCGGGTGCCGTATTCAGCCACGGTGTGGTTGGTACGGGATAGt > 2:990033/1‑151 (MQ=255)
acaTTGTTGCCGGAATCAGGGTTCTGCTCATAGTCATAAATCAGTGTCCGGCTCAGGGAAGACACTGCACTGGAGGCTGTCGAGGTATAATCGTCAATAAATAAACCGGGTGCCGTATTCAGCCACGGTGTGGTTGGTACGGGATAGTCAt > 1:587898/1‑151 (MQ=255)
tgttgCCGGAATCAGGGTTCTGCTCATAGTCATAAATCAGTGTCCGGCTCAGGGAAGACACTGCACTGGAGGCTGTCGAGGTATAATCGTCAATAAATAAACCGGGTGCCGTATTCAGCCACGGTGTGGTTGGTACGGGATAGTCATaca > 1:1160398/1‑150 (MQ=255)
gCCGGAATCAGGGTTCTGCTCATAGTCATAAATCAGTGTCCGGCTCAGGGAAGACACTGCACTGGAGGCTGTCGAGGTATAATCGTCAATAAATAAACCGGGTGCCGTATTCAGCCACGGTGTGGTTGGTACGGGATAGTCATACACTGa < 1:454722/150‑1 (MQ=255)
ggAATCAGGGTTCTGCTCATAGTCATAAATCAGTGTCCGGCTCAGGGAAGACACTGCACTGGAGGCTGTCGAGGTATAATCGTCAATAAATAAACCGGGTGCCGTATTCAGCCACGGTGTGGTTGGTACGGGATAGTCATACACTGACat > 2:252562/1‑150 (MQ=255)
ggAATCAAGGTTCTGCTCATAGTCATAAATCAGTGTCCGGCTCAGGGAAGACACTGCACTGGAGGCTGTCGAGGTATAATCGTCAATAAATAAACCGGGTGCCGTATTCAGCCACGGTGTGGTTGGTACGGGATAGTCATACACTGACata < 2:1047419/151‑1 (MQ=255)
gAATCAGGGTTCTGCTCATAGTCATAAATCAGTGTCCGGCTCAGGGAAGACACTGCACTGGAGGCTGTCGAGGTATAATCGTCAATAAATAAACCGGGTGCCGTATTCAGCCACGGTGTGGTTGGTACGGGATAGTCATACACTGACatat < 1:69771/151‑1 (MQ=255)
gAATCAGGGTTCTGCTCATAGTCATAAATCAGTGTCCGGCTCAGGGAAGACACTGCACTGGAGGCTGTCGAGGTATAATCGTCAATAAATAAACCGGGTGCCGTATTCAGCCACGGTGTGGTTGGTACGGGATAGTCATACACTGACatat < 1:250456/151‑1 (MQ=255)
tCAGGGTTCTGCTCATAGTCATAAATCAGTGTCCGGCTCAGGGAAGACACTGCACTGGAGGCTGTCGAGGTATAATCGTCAATAAATAAACCGGGTGCCGTATTCAGCCACGGTGTGGTTGGTACGGGATAGTCATACACTGACATATAAt > 2:343292/1‑151 (MQ=255)
tGCTCATAGTCATAAATCAGTGTCCGGCTCAGGGAAGACACTGCACTGGAGGCTGTCGAGGTATAATCGTCAATAAATAAACCGGGTGCCGTATTCAGCCACGGTGTGGTTGGTACGGGATAGTCATACACTGACATATAATCCCTgcgc > 2:249532/1‑150 (MQ=255)
aGTCATAAATCAGTGTGCGGCTCAGGGAAGACACTGCACTGGAGGCTGTCGAGGTATAAACGTCAATAAATAAACCGGGTGCCGTATTCAGCCACGGTGTGGTTGGTACGGGAGAGTCATACACTGACATATAATCCCTGCGCACGctct < 2:188718/150‑1 (MQ=255)
aGTCATAAATCAGTGTCCGGCTCAGGGAAGACACTGCACTGGAGGCTGTCGAGGTATAATCGTCAATAAATAAACCGGGTGCCGTATTCAGCCACGGTGTGGTTGGTACGGGATAGTCATACACTGACATATAATCCCTGCGCACACtctc > 1:775465/1‑151 (MQ=255)
cATAAATCAGTGTCCGGCTCAGGGAAGACACTGCACTGGAGGCTGTCGAGGTATAATCGTCAATAAATAAACCGGGTGCCGTATTCAGCCACGGTGTGGTTGGTACGGGATAGTCATACACTGACATATAATCCCTGCGCACACTCTCAc < 1:12718/150‑1 (MQ=255)
aTAAATCAGTGTCCGGCTCAGGGAAGACACTGCACTGGAGGCTGTCGAGGTATAATCGTCAATAAATAAACCGGGTGCCGTATTCAGCCACGGTGTGGTTGGTACGGGATAGTCATACACTGACATATAATCCCTGCGCACACTCTCACCa < 1:70465/151‑1 (MQ=255)
aTAAATCAGTGTCCGGCTCAGGGAAGACACTGCACTGGAGGCTGTCGAGGTATAATCGTCAATAAATAAACCGGGTGCCGTATTCAGCCACGGTGTGGTTGGTACGGGATAGTCATACACTGACATATAATCCCTGCGCACACTCTCACCa < 2:863775/151‑1 (MQ=255)
aTAAATCAGTGTCCGGCTCAGGGAAGACACTGCACTGGAGGCTGTCGAGGTATAATCGTCAATAAATAAACCGGGTGCCGTATTCAGCCACGGTGTGGTTGGTACGGGATAGTCATACACTGACATATAATCCCTGCGCACACTCTCACCa < 1:1158862/151‑1 (MQ=255)
aaaTCAGTGTCCGGCTCAGGGAAGACACTGCACTGGAGGCTGTCGAGGTATAATCGTCAATAAATAAACCGGGTGCCGTATTCAGCCACGGTGTGGTTGGTACGGGATAGTCATACACTGACATATAATCCCTGCGCACACTCTCACCAGt < 2:378957/151‑1 (MQ=255)
cAGTGTCCGGCTCAGGGAAGACACTGCACTGGAGGCTGTCGAGGTATAATCGTCAATAAATAAACCGGGTGCCGTATTCAGCCACGGTGTGGTTGGTACGGGATAGTCATACACTGACATATAATCCCTGCGCACACTCTCACCAGTGAc < 2:858806/150‑1 (MQ=255)
cAGTGTCCGGCTCAGGGAAGACACTGCACTGGAGGCTGTCGAGGTATAATCGTCAATAAATAAACCGGGTGCCGTATTCAGCCACGGTGTGGTTGGTACGGGATAGTCATACACTGACATATAATCCCTGCGCACACTCTCACCAGTGAc < 2:261333/150‑1 (MQ=255)
cAGTGTCCGGCTCAGGGAAGACACTGCACTGGAGGCTGTCGAGGTATAATCGTCAATAAATAAACCGGGTGCCGTATTCAGCCACGGTGTGGTTGGTACGGGATAGTCATACACTGACATATAATCCCTGCGCACACTCTCACCAGTGAc > 1:207898/1‑150 (MQ=255)
tCCGGCTCAGGGAAGACACTGCACTGGAGGCTGTCGAGGTATAATCGTCAATAAATAAACCGGGTGCCGTATTCAGCCACGGTGTGGTTGGTACGGGATAGTCATACACTGACATATAATCCCTGCGCACACTCTCACCAGTGACAATAAc > 2:223478/1‑151 (MQ=255)
cGGCTCAGGGAAGACACTGCACTGGAGGCTGTCGAGGTATAATCGTCAATAAATAAACCGGGTGCCGTATTCAGCCACGGTGTGGTTGGTACGGGATAGTCATACACTGACATATAATCCCTGCGCACACTCTCACCAGTGACAATAACaa < 2:702006/151‑1 (MQ=255)
cAGGGAAGACACTGCACTGGAGGCTGTCGAGGTATAATCGTCAATAAATAAACCGGGTGCCGTATTCAGCCACGGTGTGGTTGGTACGGGATAGTCATACACTGACATATAATCCCTGCGCACACTCTCACCAGTGACAATAACAATCg < 2:586204/149‑1 (MQ=255)
cAGGGAAGACACTGCACTGGAGGCTGTCGAGGTATAATCGTCAATAAATAAACCGGGTGCCGTATTCAGCCACGGTGTGGTTGGTACGGGATAGTCATACACTGACATATAATCCCTGCGCACACTCTCACCAGTGACAATAACAATCg < 2:106646/149‑1 (MQ=255)
cAGGGAAGACACTGCACTGGAGGCTGTCGAGGTATAATCGTCAATAAATAAACCGGGTGCCGTATTCAGCCACGGTGTGGTTGGTACGGGATAGTCATACACTGACATATAATCCCTGCGCACACTCTCACCAGTGACAATAACAATCg < 2:845568/149‑1 (MQ=255)
aGGGAAGACACTGCACTGGAGGCTGTCGAGGTATAATCGTCAATAAATAAACCGGGTGCCGTATTCAGCCACGGTGTGGTTGGTACGGGATAGTCATACACTGACATATAATCCCTGCGCACACTCTCACCAGTGACAATAACAATCGTAt > 1:173152/1‑151 (MQ=255)
aaGACACTGCACTGGAGGCTGTCGAGGTATAATCGTCAATAAATAAACCGGGTGCCGTATTCAGCCACGGTGTGGTTGGTACGGGATAGTCATACACTGACATATAATCCCTGCGCACACTCTCACCAGTGACAATAACAATCGTATCat > 1:603728/1‑150 (MQ=255)
gACACTGCACTGGAGGCTGTCGAGGTATAATCGTCAATAAATAAACCGGGTGCCGTATTCAGCCACGGTGTGGTTGGTACGGGATAGTCATACACTGACATATAATCCCTGCGCACACTCTCACCAGTGACAATAACAATCGTATCAtata < 1:570419/151‑1 (MQ=255)
acacTGCACTGGAGGCTGTCGAGGTATAATCGTCAATAAATAAACCGGGTGCCGTATTCAGCCACGGTGTGGTTGGTACGGGATAGTCATACACTGACATATAATCCCTGCGCACACTCTCACCAGTGACAATAACAATCGTATCATATaa < 1:1101800/151‑1 (MQ=255)
|
TGCGTGTGTCATGCTCCCCCAGTTTTCCTTGATTGGATATCCACCATGTGCTGTATCCTGCTTTTGCTGCCAGCGCCACCACATTGTTGCCGGAATCAGGGTTCTGCTCATAGTCATAAATCAGTGTCCGGCTCAGGGAAGACACTGTACTGGAGGCTGTCGAGGTATAATCGTCAATAAATAAACCGGGTGCCGTATTCAGCCACGGTGTGGTTGGTACGGGATAGTCATACACTGACATATAATCCCTGCGCACACTCTCACCAGTGACAATAACAATCGTATCATATAA > NC_000913/4500234‑4500525
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
