Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F50 I2 R1 121 82.0 2593086 97.7% 2533445 150.3

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,544,910 T→C L10P (CTA→CCA)  gntX → DNA catabolic protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,544,9100TC100.0% 300.8 / NA 76L10P (CTA→CCA) gntXDNA catabolic protein
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (46/30);  total (46/30)

CGGCATTCAGTCCCCATCCGTGCAGCAGCACAAGATGAACATTCCCCTGACCTTTGGTCTGCCACCAGATGTTATTCATCCGCTATTGTTCTCTTTTGACTTACAAGGATGAACATATGCTAACAGTACCGGGATTATGCTGGCTATGCCGAATGCCACTGGCGTTAGGTCATTGGGGGATTTGTTCGGTCTGTTCACGCGCCACCCGCACAGATAAAACGTTATGCCCACAATGTGGATTACCCGCCACACACTCCCATCTTCCCTGCGGTCGCTGCCTGCAAAAACCGC  >  NC_000913/3544766‑3545056
                                                                                                                                                |                                                                                                                                                  
cGGCATTCAGTCCCCATCCGTGCAGCAGCACAAGATGAACATTCCCCTGACCTTTGGTCTGCCACCAGATGTTATTCATCCGCTATTGTTCTCTTTTGACTTACAAGGATGAACATATGCTAACAGTACCGGGATTATGCTGGCCATGCCg                                                                                                                                              <  2:565070/151‑1 (MQ=255)
   cATTCAGTCCCCATCCGTGCAGCAGCACAAGATGAACATTCCCCTGACCTTTGGTCTGCCACCAGATGTTATTCATCCGCTATTGTTCTCTTTTGACTTACAAGGATGAACATATGCTAACAGTACCGGGATTATGCTGGCCATGCCGAAt                                                                                                                                           <  2:406845/151‑1 (MQ=255)
           ccccATCCGTGCAGCAGCACAAGATGAACATTCCCCTGACCTTTGGTCTGCCACCAGATGTTATTCATCCGCTATTGTTCTCTTTTGACTTACAAGGATGAACATATGCTAACAGTACCGGGATTATGCTGGCCATGCCGAATGCCACTg                                                                                                                                    <  1:783977/150‑1 (MQ=255)
            cccATCCGTGCAGCAGCACAAGATGAACATTCCCCTGACCTTTGGTCTGCCACCAGATGTTATTCATCCGCTATTGTTCTCTTTTGACTTACAAGGATGAACATATGCTAACAGTACCGGGATTATGCTGGCCATGCCGAATGCCACTGGc                                                                                                                                  >  1:658392/1‑151 (MQ=255)
            cccATCCGTGCAGCAGCACAAGATGAACATTCCCCTGACCTTTGGTCTGCCACCAGATGTTATTCATCCGCTATTGTTCTCTTTTGACTTACAAGGATGAACATATGCTAACAGTACCGGGATTATGCTGGCCATGCCGAATGCCACTGGc                                                                                                                                  <  1:797168/151‑1 (MQ=255)
                tCCGTGCAGCAGCACAAGATGAACATTCCCCTGACCTTTGGTCTGCCACCAGATGTTATTCATCCGCTATTGTTCTCTTTTGACTTACAAGGATGAACATATGCTAACAGTACCGGGATTATGCTGGCCATGCCGAATGCCACTGGCGtt                                                                                                                               >  1:184677/1‑150 (MQ=255)
                  cGTGCAGCAGCACAAGATGAACATTCCCCTGACCTTTGGTCTGCCACCAGATGTTATTCATCCGCTATTGTTCTCTTTTGACTTACAAGGATGAACATATGCTAACAGTACCGGGATTATGCTGGCCATGCCGAATGCCACTGGCGTTAgg                                                                                                                            <  2:1134423/151‑1 (MQ=255)
                   gTGCAGCAGCACAAGATGAACATTCCCCTGACCTTTGGTCTGCCACCAGATGTTATTCATCCGCTATTGTTCTCTTTTGACTTACAAGGATGAACATATGCTAACAGTACCGGGATTATGCTGGCCATGCCGAATGCCACTGGCGTTAGGt                                                                                                                           >  1:903460/1‑151 (MQ=255)
                    tGCAGCAGCACAAGATGAACATTCCCCTGACCTTTGGTCTGCCACCAGATGTTATTCATCCGCTATTGTTCTCTTTTGACTTACAAGGATGAACATATGCTAACAGTACCGGGATTATGCTGGCCATGCCGAATGCCACTGGCGTTAGGTc                                                                                                                          >  2:1271780/1‑151 (MQ=255)
                     gcagcagcaCAAGATGAACATTCCCCTGACCTTTGGTCTGCCACCAGATGTTATTCATCCGCTATTGTTCTCTTTTGACTTACAAGGATGAACATATGCTAACAGTACCGGGATTATGCTGGCCATGCCGAATGCCACTGGCGTTAGGTc                                                                                                                          <  1:194108/150‑1 (MQ=255)
                          agcaCAAGATGAACATTCCCCTGACCTTTGGTCTGCCACCAGATGTTATTCATCCGCTATTGTTCTCTTTTGACTTACAAGGATGAACATATGCTAACAGTACCGGGATTATGCTGGCCATGCCGAATGCCACTGGCGTTAGGTCATTggg                                                                                                                    >  1:1134289/1‑151 (MQ=255)
                            cacaAGATGAACATTCCCCTGACCTTTGGTCTGCCACCAGATGTTATTCATCCGCTATTGTTCTCTTTTGACTTACAAGGATGAACATATGCTAACAGTACCGGGATTATGCTGGCCATGCCGAATGCCACTGGCGTTAGGTCATTggggg                                                                                                                  <  1:1171240/151‑1 (MQ=255)
                              caAGATGAACATTCCCCTGACCTTTGGTCTGCCACCAGATGTTATTCATCCGCTATTGTTCTCTTTTGACTTACAAGGATGAACATATGCTAACAGTACCGGGATTATGCTGGCCATGCCGAATGCCACTGGCGTTAGGTCATTGGGGGAt                                                                                                                <  1:1220358/151‑1 (MQ=255)
                                aGATGAACATTCCCCTGACCTTTGGTCTGCCACCAGATGTTATTCATCCGCTATTGTTCTCTTTTGACTTACAAGGATGAACATATGCTAACAGTACCGGGATTATGCTGGCCATGCCGAATGCCACTGGCGTTAGGTCATTGGGGGAttt                                                                                                              <  2:409400/151‑1 (MQ=255)
                                aGATGAACATTCCCCTGACCTTTGGTCTGCCACCAGATGTTATTCATCCGCTATTGTTCTCTTTTGACTTACAAGGATGAACATATGCTAACAGTACCGGGATTATGCTGGCCATGCCGAATGCCACTGGCGTTAGGTCATTGGGGGAttt                                                                                                              <  1:44496/151‑1 (MQ=255)
                                    gAACATTCCCCTGACCTTTGGTCTGCCACCAGATGTTATTCATCCGCTATTGTTCTCTTTTGACTTACAAGGATGAACATATGCTAACAGTACCGGGATTATGCTGGCCATGCCGAATGCCACTGGCGTTAGGTCATTGGGGGATTTGtt                                                                                                           >  1:335206/1‑150 (MQ=255)
                                       cATTCCCCTGACCTTTGGTCTGCCACCAGATGTTATTCATCCGCTATTGTTCTCTTTTGACTTACAAGGATGAACATATGCTAACAGTACCGGGATTATGCTGGCCATGCCGAATGCCACTGGCGTTAGGTCATTGGGGGATTTGTTCGGt                                                                                                       >  2:255503/1‑151 (MQ=255)
                                          tCCCCTGACCTTTGGTCTGCCACCAGATGTTATTCATCCGCTATTGTTCTCTTTTGACTTACAAGGATGAACATATGCTAACAGTACCGGGATTATGCTGGCCATGCCGAATGCCACTGGCGTTAGGTCATTGGGGGATTTGTTCGGTCt                                                                                                     <  1:956210/150‑1 (MQ=255)
                                           ccccTGACCTTTGGTCTGCCACCAGATGTTATTCATCCGCTATTGTTCTCTTTTGACTTACAAGGATGAACATATGCTAACAGTACCGGGATTATGCTGGCCATGCCGAATGCCACTGGCGTTAGGTCATTGGGGGATTTGTTCGGTCTGt                                                                                                   >  2:1068551/1‑151 (MQ=255)
                                              cTGACCTTTGGTCTGCCACCAGATGTTATTCATCCGCTATTGTTCTCTTTTGACTTACAAGGATGAACATATGCTAACAGTACCGGGATTATGCTGGCCATGCCGAATGCCACTGGCGTTAGGTCATTGGGGGATTTGTTCGGTCTGTTc                                                                                                 >  1:233299/1‑150 (MQ=255)
                                                 aCCTTTGGTCTGCCACCAGATGTTATTCATCCGCTATTGTTCTCTTTTGACTTACAAGGATGAACATATGCTAACAGTACCGGGATTATGCTGGCCATGCCGAATGCCACTGGCGTTAGGTCATTGGGGGATTTGTTCGGTCTGTTCAcgc                                                                                             >  1:863176/1‑151 (MQ=255)
                                                   cTTTGGTCTGCCACCAGATGTTATTCATCCGCTATTGTTCTCTTTTGACTTACAAGGATGAACATATGCTAACAGTACCGGGATTATGCTGGCCATGCCGAATGCCACTGGCGTTAGGTCATTGGGGGATTTGTTCGGTCTGTTCACgcgc                                                                                           >  2:455642/1‑151 (MQ=255)
                                                     ttGGTCTGCCACCAGATGTTATTCATCCGCTATTGTTCTCTTTTGACTTACAAGGATGAACATATGCTAACAGTACCGGGATTATGCTGGCCATGCCGAATGCCACTGGCGTTAGGTCATTGGGGGATTTGTTCGGTCTGTTCACGCGcc                                                                                          >  2:481854/1‑150 (MQ=255)
                                                        gTCTGCCACCAGATGTTATTCATCCGCTATTGTTCTCTTTTGACTTACAAGGATGAACATATGCTAACAGTACCGGGATTATGCTGGCCATGCCGAATGCCACTGGCGTTAGGTCATTGGGGGATTTGTTCGGTCTGTTCACGCGCCAccc                                                                                      >  2:883311/1‑151 (MQ=255)
                                                         tCTGCCACCAGATGTTATTCATCCGCTATTGTTCTCTTTTGACTTACAAGGATGAACATATGCTAACAGTACCGGGATTATGCTGGCCATGCCGAATGCCACTGGCGTTAGGTCATTGGGGGATTTGTTCGGTCTGTTCACGCGCCACCCg                                                                                     >  1:676945/1‑151 (MQ=255)
                                                         tCTGCCACCAGATGTTATTCATCCGCTATTGTTCTCTTTTGACTTACAAGGATGAACATATGCTAACAGTACCGGGATTATGCTGGCCATGCCGAATGCCACTGGCGTTAGGTCATTGGGGGATTTGTTCGGTCTGTTCACGCGCCACCCg                                                                                     >  1:814775/1‑151 (MQ=255)
                                                         tCTGCCACCAGATGTTATTCATCCGCTATTGTTCTCTTTTGACTTACAAGGATGAACATATGCTAACAGTACCGGGATTATGCTGGCCATGCCGAATGCCACTGGCGTTAGGTCATTGGGGGATTTGTTCGGTCTGTTCACGCGCCACCCg                                                                                     >  2:783067/1‑151 (MQ=255)
                                                            gCCACCAGATGTTATTCATCCGCTATTGTTCTCTTTTGACTTACAAGGATGAACATATGCTAACAGTACCGGGATTATGCTGGCCATGCCGAATGCCACTGGCGTTAGGTCATTGGGGGATTTGTTCGGTCTGTTCACGCGCCCCCCGca                                                                                   <  1:183413/150‑1 (MQ=255)
                                                             ccaccaGATGTTATTCATCCGCTATTGTTCTCTTTTGACTTACAAGGATGAACATATGCTAACAGTACCGGGATTATGCTGGCCATGCCGAATGCCACTGGCGTTAGGTCATTGGGGGATTTGTTCGGTCTGTTCACGCGCCACCCGcaca                                                                                 <  2:997997/151‑1 (MQ=255)
                                                              caccaGATGTTATTCATCCGCTATTGTTCTCTTTTGACTTACAAGGATGAACATATGCTAACAGTACCGGGATTATGCTGGCCATGCCGAATGCCACTGGCGTTAGGTCATTGGGGGATTTGTTCGGTCTGTTCACGCGCCACCCGCACAg                                                                                <  1:344949/151‑1 (MQ=255)
                                                               accaGATGTTATTCATCCGCTATTGTTCTCTTTTGACTTACAAGGATGAACATATGCTAACAGTACCGGGATTATGCTGGCCATGCCGAATGCCACTGGCGTTAGGTCATTGGGGGATTTGTTCGGTCTGTTCACGCGCCACCCGcac                                                                                  >  2:808620/1‑148 (MQ=255)
                                                                ccaGATGTTATTCATCCGCTATTGTTCTCTTTTGACTTACAAGGATGAACATATGCTAACAGTACCGGGATTATGCTGGCCATGCCGAATGCCACTGGCGTTAGGTCATTGGGGGATTTGTTCGGTCTGTTCACGCGCCACCCGCACAGa                                                                               <  1:942858/150‑1 (MQ=255)
                                                                ccaGATGTTATTCATCCGCTATTGTTCTCTTTTGACTTACAAGGATGAACATATGCTAACAGTACCGGGATTATGCTGGCCATGCCGAATGCCACTGGCGTTAGGTCATTGGGGGATTTGTTCGGTCTGTTCACGCGCCACCCGCACAGAt                                                                              <  1:1049771/151‑1 (MQ=255)
                                                                 caGATGTTATTCATCCGCTATTGTTCTCTTTTGACTTACAAGGATGAACATATGCTAACAGTACCGGGATTATGCTGGCCATGCCGAATGCCACTGGCGTTAGGTCATTGGGGGATTTGTTCGGTCTGTTCACGCGCCACCCGCACAGAt                                                                              >  1:45180/1‑150 (MQ=255)
                                                                  aGATGTTATTCATCCGCTATTGTTCTCTTTTGACTTACAAGGATGAACATATGCTAACAGTACCGGGATTATGCTGGCCATGCCGAATGCCACTGGCGTTAGGTCATTGGGGGATTTGTTCGGTCTGTTCACGCGCCACCCGCACAGATa                                                                             >  2:739076/1‑150 (MQ=255)
                                                                   gATGTTATTCATCCGCTATTGTTCTCTTTTGACTTACAAGGATGAACATATGCTAACAGTACCGGGATTATGCTGGCCATGCCGAATGCCACTGGCGTTAGGTCATTGGGGGATTTGTTCGGTCTGTTCACGCGCCCCCCGCACAGATaaa                                                                           <  1:903121/151‑1 (MQ=255)
                                                                      gTTATTCATCCGCTATTGTTCTCTTTTGACTTACAAGGATGAACATATGCTAACAGTACCGGGATTATGCTGGCCATGCCGAATGCCACTGGCGTTAGGTCATTGGGGGATTTGTTCGGTCTGTTCACGCGCCACCCGCACAGATAAAAc                                                                         <  1:356194/150‑1 (MQ=255)
                                                                         aTTCATCCGCTATTGTTCTCTTTTGACTTACAAGGATGAACATATGCTAACAGTACCGGGATTATGCTGGCCATGCCGAATGCCACTGGCGTTAGGTCATTGGGGGATTTGTTCGGTCTGTTCACGCGCCACCCGCACAGATAAAACGtt                                                                      <  2:222270/150‑1 (MQ=255)
                                                                          ttCATCCGCTATTGTTCTCTTTTGACTTACAAGGATGAACATATGCTAACAGTACCGGGATTATGCTGGCCATGCCGAATGCCACTGGCGTTAGGTCATTGGGGGATTTGTTCGGTCTGTTCACGCGCCACCCGCACAGATAAAACGTTAt                                                                    >  2:893633/1‑151 (MQ=255)
                                                                            cATCCGCTATTGTTCTCTTTTGACTTACAAGGATGAACATATGCTAACAGTACCGGGATTATGCTGGCCATGCCGAATGCCACTGGCGTTAGGTCATTGGGGGATTTGTTCGGTCTGTTCACGCGCCACCCGCACAGATAAAACGTTATg                                                                   <  1:723159/150‑1 (MQ=255)
                                                                             aTCCGCTATTGTTCTCTTTTGACTTACAAGGATGAACATATGCTAACAGTACCGGGATTATGCTGGCCATGCCGAATGCCACTGGCGTTAGGTCATTGGGGGATTTGTTCGGTCTGTTCACGCGCCACCCGCACAGATAAAACGTTATGcc                                                                 >  2:1272258/1‑151 (MQ=255)
                                                                             aTCCGCTATTGTTCTCTTTTGACTTACAAGGATGAACATATGCTAACAGTACCGGGATTATGCTGGCCATGCCGAATGCCACTGGCGTTAGGTCATTGGGGGATTTGTTCGGTCTGTTCACGCGCCACCCGCACAGATAAAACGTTATGcc                                                                 >  2:450636/1‑151 (MQ=255)
                                                                               ccGCTATTGTTCTCTTTTGACTTACAAGGATGAACATATGCTAACAGTACCGGGATTATGCTGGCCATGCCGAATGCCACTGGCGTTAGGTCATTGGGGGATTTGTTCGGTCTGTTCACGCGCCACCCGCACAGATAAAACGTTATGCCca                                                               <  2:1007448/151‑1 (MQ=255)
                                                                                    aTTGTTCTCTTTTGACTTACAAGGATGAACATATGCTAACAGTACCGGGATTATGCTGGCCATGCCGAATGCCACTGGCGTTAGGTCATTGGGGGATTTGTTCGGTCTGTTCACGCGCCACCCGCACAGATAAAACGTTATGCCCACAAt                                                           <  2:619/150‑1 (MQ=255)
                                                                                            ctTTTGACTTACAAGGATGAACATATGCTAACAGTACCGGGATTATGCTGGCCATGCCGAATGCCACTGGCGTTAGGTCATTGGGGGATTTGTTCGGTCTGTTCACGCGCCACCCGCACAGATAAAACGTTATGCCCACAATGTGGAt                                                     <  2:427209/148‑1 (MQ=255)
                                                                                             ttttGACTTACAAGGATGAACATATGCTAACAGTACCGGGATTATGCTGGCCATGCCGAATGCCACTGGCGTTAGGTCATTGGGGGATTTGTTCGGTCTGTTCACGCGCCACCCGCACAGATAAAACGTTATGCCCACAATGTGGATTAcc                                                 >  1:835237/1‑151 (MQ=255)
                                                                                              tttGACTTACAAGGATGAACATATGCTAACAGTACCGGGATTATGCTGGCCATGCCGAATGCCACTGGCGTTAGGTCATTGGGGGATTTGTTCGGTCTGTTCACGCGCCACCCGCACAGATAAAACGTTATGCCCACAATGTGGATTAccc                                                >  1:1035973/1‑151 (MQ=255)
                                                                                              tttGACTTACAAGGATGAACATATGCTAACAGTACCGGGATTATGCTGGCCATGCCGAATGCCACTGGCGTTAGGTCATTGGGGGATTTGTTCGGTCTGTTCACGCGCCACCCGCACAGATAAAACGTTATGCCCACAATGTGGATTAc                                                  <  2:880602/149‑1 (MQ=255)
                                                                                               ttGACTTACAAGGATGAACATATGCTAACAGTACCGGGATTATGCTGGCCATGCCGAATGCCACTGGCGTTAGGTCATTGGGGGATTTGTTCGGTCTGTTCACGCGCCACCCGCACAGATAAAACGTTATGCCCACAATGTGGATTAccc                                                <  2:580637/150‑1 (MQ=255)
                                                                                                tGACTTACAAGGATGAACATATGCTAACAGTACCGGGATTATGCTGGCCATGCCGAATGCCACTGGCGTTAGGTCATTGGGGGATTTGTTCGGTCTGTTCACGCGCCACCCGCACAGATAAAACGTTATGCCCACAATGTGGATTACCCg                                               <  2:406705/150‑1 (MQ=255)
                                                                                                 gACTTACAAGGATGAACATATGCTAACAGTACCGGGATTATGCTGGCCATGCCGAATGCCACTGGCGTTAGGTCATTGGGGGATTTGTTCGGTCTGTTCACGCGCCACCCGCACAGATAAAACGTTATGCCCACAATGTGGATTACCCGcc                                             >  2:712727/1‑151 (MQ=255)
                                                                                                   cTTACAAGGATGAACATATGCTAACAGTACCGGGATTATGCTGGCCATGCCGAATGCCACTGGCGTTAGGTCATTGGGGGATTTGTTCGGTCTGTTCACGCGCCACCCGCACAGATAAAACGTTATGCCCACAATGTGGATTACCCGCcac                                           >  2:986254/1‑151 (MQ=255)
                                                                                                     tACAAGGATGAACATATGCTAACAGTACCGGGATTATGCTGGCCATGCCGAATGCCACTGGCGTTAGGTCATTGGGGGATTTGTTCGGTCTGTTCACGCGCCACCCGCACAGATAAAACGTTATGCCCACAATGTGGATTACCCGCcacac                                         >  2:382084/1‑151 (MQ=255)
                                                                                                     tACAAGGATGAACATATGCTAACAGTACCGGGATTATGCTGGCCATGCCGAATGCCACTGGCGTTAGGTCATTGGGGGATTTGTTCGGTCTGTTCACGCGCCACCCGCACAGATAAAACGTTATGCCCACAATGTGGATTACCCGCcacac                                         >  2:1070014/1‑151 (MQ=255)
                                                                                                        aaGGATGAACATATGCTAACAGTACCGGGATTATGCTGGCCATGCCGAATGCCACTGGCGTTAGGTCATTGGGGGATTTGTTCGGTCTGTTCACGCGCCACCCGCACAGATAAAACGTTATGCCCACAATGTGGATTACCCGCCacacac                                       >  1:1191657/1‑150 (MQ=255)
                                                                                                         aGGATGAACATATGCTAACAGTACCGGGATTATGCTGGCCATGCCGAATGCCACTGGCGTTAGGTCATTGGGGGATTTGTTCGGTCTGTTCACGCGCCACCCGCACAGATAAAACGTTATGCCCACAATGTGGATTACCCGCCACACACTc                                     >  1:247515/1‑151 (MQ=255)
                                                                                                          ggATGAACATATGCTAACAGTACCGGGATTATGCTGGCCATGCCGAATGCCACTGGCGTTAGGTCATTGGGGGATTTGTTCGGTCTGTTCACGCGCCACCCGCACAGATAAAACGTTATGCCCACAATGTGGATTACCCGCCACACACTcc                                    >  2:793839/1‑151 (MQ=255)
                                                                                                              gAACATATGCTAACAGTACCGGGATTATGCTGGCCATGCCGAATGCCACTGGCGTTAGGTCATTGGGGGATTTGTTCGGTCTGTTCACGCGCCACCCGCACAGATAAAACGTTATGCCCACAATGTGGATTACCCGCCACACACTCCCATc                                >  1:358087/1‑151 (MQ=255)
                                                                                                               aaCATATGCTAACAGTACCGGGATTATGCTGGCCATGCCGAATGCCACTGGCGTTAGGTCATTGGGGGATTTGTTCGGTCTGTTCACGCGCCACCCGCACAGATAAAACGTTATGCCCACAATGTGGATTACCCGCCACACACTCCCATCt                               >  2:749635/1‑151 (MQ=255)
                                                                                                                  atatGCTAACAGTACCGGGATTATGCTGGCCATGCCGAATGCCACTGGCGTTAGGTCATTGGGGGATTTGTTCGGTCTGTTCACGCGCCACCCGCACAGATAAAACGTTATGCCCACAATGTGGATTACCCGCCACACACTCCCATCTTcc                            >  2:354422/1‑151 (MQ=255)
                                                                                                                  atatGCTAACAGTACCGGGATTATGCTGGCCATGCCGAATGCCACTGGCGTTAGGTCATTGGGGGATTTGTTCGGTCTGTTCACGCCCCACCCGCACAGATAAAACGTTATGCCCACAATGTGGATTACCCGCCACACACTCCCATCTTcc                            >  2:1133427/1‑151 (MQ=255)
                                                                                                                   tatGCTAACAGTACCGGGATTATGCTGGCCATGCCGAATGCCACTGGCGTTAGGTCATTGGGGGATTTGTTCGGTCTGTTCACGCGCCACCCGCACAGATAAAACGTTATGCCCACAATGTGGATTACCCGCCACACACTCCCATCTTccc                           >  2:102974/1‑151 (MQ=255)
                                                                                                                    atGCTAACAGTACCGGGATTATGCTGGCCATGCCGAATGCCACTGGCGTTAGGTCATTGGGGGATTTGTTCGGTCTGTTCACGCGCCACCCGCACAGATAAAACGTTATGCCCACAATGTGGATTACCCGCCACACACTCCCATCTTCCCt                          >  2:1089143/1‑151 (MQ=255)
                                                                                                                     tGCTAACAGTACCGGGATTATGCTGGCCATGCCGAGTGCCACTGGCGTTAGGTCATTGGGGGATTTGTTCGGTCTGTTCACGCGCCACCCGCACAGATAAAACGTTATGCCCACAATGTGGATTACCCGCCACACACTCCCATCTTCCCTg                         >  1:1080928/1‑151 (MQ=255)
                                                                                                                      gCTAACAGTACCGGGATTATGCTGGCCATGCCGAATGCCACTGGCGTTAGGTCATTGGGGGATTTGTTCGGTCTGTTCACGCGCCACCCGCACAGATAAAACGTTATGCCCACAATGTGGATTACCCGCCACACACTCCCATCTTCCCTg                         <  1:509390/150‑1 (MQ=255)
                                                                                                                      gCTAACAGTACCGGGATTATGCTGGCCATGCCGAATGCCACTGGCGTTAGGTCATTGGGGGATTTGTTCGGTCTGTTCACGCGCCACCCGCACAGATAAAACGTTATGCCCACAATGTGGATTACCCGCCACACACTCCCATCTTCCCTGc                        >  2:543984/1‑151 (MQ=255)
                                                                                                                          aCAGTCCCGGGTTTATGCTGGCCATGCCGAAGGCCACTGGCGTTAGGTCATTGGGGAATTTGTTCGTTCTGTTCACGCGCCCCCCGCACAGATAAAACGTTATGCCCACAATTTGGATTACCCGCCACACACTCCCATCTTCCCTGCGGTc                    <  2:767718/151‑1 (MQ=255)
                                                                                                                            aGTACCGGGATTATGCTGGCCATGCCGAATGCCACTGGCGTTAGGTCATTGGGGGATTTGTTCGGTCTGTTCACGCGCCACCCGCACAGATAAAACGTTATGCCCACAATGTGGATTACCCGCCACACACTCCCATCTTCCCTGCGGTCGc                  <  2:275544/151‑1 (MQ=255)
                                                                                                                              tACCGGGATTATGCTGGCCATGCCGAATGCCACTGGCGTTAGGTCATTGGGGGATTTGTTCGGTCTGTTCACGCGCCACCCGCACAGATAAAACGTTATGCCCACAATGTGGATTACCCGCCACACACTCCCATCTTCCCTGCGGTCGctg                >  2:96083/1‑151 (MQ=255)
                                                                                                                                ccGGGATTATGCTGGCCATGCCGAATGCCACTGGCGTTAGGTCATTGGGGGATTTGTTCGGTCTGTTCACGCGCCACCCGCACAGATAAAACGTTATGCCCACAATGTGGATTACCCGCCACACACTCCCATCTTCCCTGCGGTCGctgcc              >  2:47645/1‑151 (MQ=255)
                                                                                                                                 cGGGATTATGCTGGCCATGCCGAATGCCACTGGCGTTAGGTCATTGGGGGATTTGTTCGGTCTGTTCACGCGCCACCCGCACAGATAAAACGTTATGCCCACAATGTGGATTACCCGCCACACACTCCCATCTTCCCTGCGGTCGctgcct             >  2:935498/1‑151 (MQ=255)
                                                                                                                                  gggATTATGCTGGCCATGCCGAATGCCACTGGCGTTAGGTCATTGGGGGATTTGTTCGGTCTGTTCACGCGCCACCCGCACAGATAAAACGTTATGCCCACAATGTGGATTACCCGCCACACACTCCCATCTTCCCTGCGGTCGctgcctg            >  1:1070870/1‑151 (MQ=255)
                                                                                                                                  gggATTATGCTGGCCATGCCGAATGCCACTGGCGTTAGGTCATTGGGGGATTTGTTCGGTCTGTTCACGCGCCACCCGCACAGATAAAACGTTATGCCCACAATGTGGATTACCCGCCACACACTCCCATCTTCCCTGCGGTCGctgcctg            >  2:909527/1‑151 (MQ=255)
                                                                                                                                        aTGCTGGCCATGCCGAATGCCACTGGCGTTAGGTCATTGGGGGATTTGTTCGGTCTGTTCACGCGCCACCCGCACAGATAAAACGTTATGCCCACAATGTGGATTACCCGCCACACACTCCCATCTTCCCTGCGGTCGCTGCCTGCaaaa       >  1:483856/1‑150 (MQ=255)
                                                                                                                                            tGGCCATGCCGAATGCCACTGGCGTTAGGTCATTGGGGGATTTGTTCGGTCTGTTCACGCGCCACCCGCACAGATAAAACGTTATGCCCACAATGTGGATTACCCGCCACACACTCCCATCTTCCCTGCGGTCGCTGCCTGCAAAAAccgc  >  2:610946/1‑151 (MQ=255)
                                                                                                                                             ggCCATGCCGAATGCCACTGGCGTTAGGTCATTGGGGGATTTGTTCGGTCTGTTCACGCGCCACCCGCACAGATAAAACGTTATGCCCACAATGTGGATTACCCGCCACACACTCCCATCTTCCCTGCGGTCGCTGCCTGCAAAAAccgc  <  2:1137470/150‑1 (MQ=255)
                                                                                                                                                |                                                                                                                                                  
CGGCATTCAGTCCCCATCCGTGCAGCAGCACAAGATGAACATTCCCCTGACCTTTGGTCTGCCACCAGATGTTATTCATCCGCTATTGTTCTCTTTTGACTTACAAGGATGAACATATGCTAACAGTACCGGGATTATGCTGGCTATGCCGAATGCCACTGGCGTTAGGTCATTGGGGGATTTGTTCGGTCTGTTCACGCGCCACCCGCACAGATAAAACGTTATGCCCACAATGTGGATTACCCGCCACACACTCCCATCTTCCCTGCGGTCGCTGCCTGCAAAAACCGC  >  NC_000913/3544766‑3545056

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A