Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A5 F50 I2 R1 139 64.5 2139856 92.7% 1983646 149.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,918,289 G→A intergenic (‑24/+27) atpG ← / ← atpA F1 sector of membrane‑bound ATP synthase, gamma subunit/F1 sector of membrane‑bound ATP synthase, alpha subunit

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,918,2890GA100.0% 260.2 / NA 67intergenic (‑24/+27)atpG/atpAF1 sector of membrane‑bound ATP synthase, gamma subunit/F1 sector of membrane‑bound ATP synthase, alpha subunit
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (40/27);  total (40/27)

CCGCCATGCGATCCTGCGATTTACGCATTTTGGAAGCGGCGACCATCTCCATCGCTTTAGTGATCTTTTGCGTGTTCTGGACGCTTGCGATCTTACTACGTATCTCTTTTGCGCCGGCCATGAGCTTCTCCTCAATGCCTTGCGGCCTGCCCTAAGGCAAGCCGCCAGACGTTACCAGGATTGGGTTGCTTTGAAGGAATCGAGGATGCCTTTCAGCTTGCCTTCGATTTCGTCGTTGTAGCCACCGGTCTGGTTGATCTCTTGCATCAACGGAGCGTGATCACGGTCGACG  >  NC_000913/3918145‑3918436
                                                                                                                                                |                                                                                                                                                   
ccgccATGCGATCCTGCGATTTACGCATTTTGGAAGCGGCGACCATCTCCATCGCTTTAGTGATCTTTTGCGTGTTCAGGACGCTTGCGATCTTACTACGTATCTCTTTTGCGCCGGCCATGAGCTTCTCCTCAATGCCTTGCGACCTGcc                                                                                                                                               >  2:600287/1‑151 (MQ=255)
    cATGCGATCCTGCGATTTACGCATTTTGGAAGCGGCGACCATCTCCATCGCTTTAGTGATCTTTTGCGTGTTCTGGACGCTTGCGATCTTACTACGTATCTCTTTTGCGCCGGCCATGAGCTTCTCCTCAATGCCTTGCGACCTGCCCTa                                                                                                                                            >  2:1068654/1‑150 (MQ=255)
     aTGCGATCCTGCGATTTACGCATTTTGGAAGCGGCGACCATCTCCATCGCTTTAGTGATCTTTTGCGTGTTCTGGACGCTTGCGATCTTACTACGTATCTCTTTTGCGCCGGCCATGAGCTTCTCCTCAATGCCTTGCGACCTGCCCTAAg                                                                                                                                          <  2:147869/151‑1 (MQ=255)
         gATCCTGCGATTTACGCATTTTGGAAGCGGCGACCATCTCCATCGCTTTAGTGATCTTTTGCGTGTTCTGGACGCTTGCGATCTTACTACGTATCTCTTTTGCGCCGGCCATGAGCTTCTCCTCAATGCCTTGCGACCTGGCCTAAGGCaa                                                                                                                                      <  2:446930/151‑1 (MQ=255)
         gATCCTGCGATTTACGCATTTTGGAAGCGGCGACCATCTCCATCGCTTTAGTGATCTTTTGCGTGTTCTGGACGCTTGCGATCTTACTACGTATCTCTTTTGCGCCGGCCATGAGCTTCTCCTCAATGCCTTGCGACCTGCCCTAAGGCa                                                                                                                                       >  2:1067530/1‑150 (MQ=255)
          aTCCTGCGATTTACGCATTTTGGAAGCGGCGACCATCTCCATCGCTTTAGTGATCTTTTGCGTGTTCTGGACGCTTGCGATCTTACTACGTATCTCTTTTGCGCCGGCCATGAGCTTCTCCTCAATGCCTTGCGACCTGCCCTAAGGCa                                                                                                                                       >  2:894486/1‑149 (MQ=255)
            ccTGCGATTTACGCATTTTGGAAGCGGCGACCATCTCCATCGCTTTAGTGATCTTTTGCGTGTTCTGGACGCTTGCGATCTTACTACGTATCTCTTTTGCGCCGGCCATGAGCTTCTCCTCAATGCCTTGCGACCTGCCCTAAGGCAAgcc                                                                                                                                   >  2:48869/1‑151 (MQ=255)
               gCGATTTACGCATTTTGGAAGCGGCGACCATCTCCATCGCTTTAGTGATCTTTTGCGTGTTCTGGACGCTTGCGATCTTACTACGTATCTCTTTTGCGCCGGCCATGAGCTTCTCCTCAATGCCTTGCGACCTGCCCTAAGGCAAgccgcc                                                                                                                                <  2:347198/151‑1 (MQ=255)
                  aTTTACGCATTTTGGAAGCGGCGACCATCTCCATCGCTTTAGTGATCTTTTGCGTGTTCTGGACGCTTGCGATCTTACTACGTATCTCTTTTGCGCCGGCCATGAGCTTCTCCTCAATGCCTTGCGACCTGCCCTAAGGCAAGCCGCCAGa                                                                                                                             <  1:887298/151‑1 (MQ=255)
                    ttACGCATTTTGGAAGCGGCGACCATCTCCATCGCTTTAGTGATCTTTTGCGTGTTCTGGACGCTTGCGATCTTACTACGTATCTCTTTTGCGCCGGCCATGAGCTTCTCCTCAATGCCTTGCGACCTGCCCTAAGGCAAGCCGCCAGAc                                                                                                                            <  1:270843/150‑1 (MQ=255)
                     tACGCATTTTGGAAGCGGCGACCATCTCCATCGCTTTAGTGATCTTTTGCGTGTTCTGGACGCTTGCGATCTTACTACGTATCTCTTTTGCGCCGGCCATGAGCTTCTCCTCAATGCCTTGCGACCTGCCCTAAGGCAAGCCGCCAGACGt                                                                                                                          >  2:424629/1‑151 (MQ=255)
                        gCATTTTGGAAGCGGCGACCATCTCCATCGCTTTAGTGATCTTTTGCGTGTTCTGGACGCTTGCGATCTTACTACGTATCTCTTTTGCGCCGGCCATGAGCTTCTCCTCAATGCCTTGCGACCTGCCCTAAGGCAAGCCGCCAGACGTTAc                                                                                                                       >  2:360703/1‑151 (MQ=255)
                         cATTTTGGAAGCGGCGACCATCTCCATCGCTTTAGTGATCTTTTGCGTGTTCTGGACGCTTGCGATCTTACTACGTATCTCTTTTGCGCCGGCCATGAGCTTCTCCTCAATGCCTTGCGACCTGCCCTAAGGCAAGCCGCCAGACGTTAcc                                                                                                                      <  1:274925/151‑1 (MQ=255)
                               ggAAGCGGCGACCATCTCCATCGCTTTAGTGATCTTTTGCGTGTTCTGGACGCTTGCGATCTTACTACGTATCTCTTTTGCGCCGGCCATGAGCTTCTCCTCAATGCCTTGCGACCTGCCCTAAGGCAAGCCGCCAGACGTTACCAGGAt                                                                                                                 <  2:665764/150‑1 (MQ=255)
                                 aaGCGGCGACCATCTCCATCGCTTTAGTGATCTTTTGCGTGTTCTGGACGCTTGCGATCTTACTACGTATCTCTTTTGCGCCGGCCATGAGCTTCTCCTCAATGCCTTGCGACCTGCCCTAAGGCAAGCCGCCAGACGTTACCAGGATTgg                                                                                                              <  1:641678/151‑1 (MQ=255)
                                 aaGCGGCGACCATCTCCATCGCTTTAGTGATCTTTTGCGTGTTCTGGACGCTTGCGATCTTACTACGTATCTCTTTTGCGCCGGCCATGAGCTTCTCCTCAATGCCTTGCGAACTGCCCTAAGGCAAGCCGCCAGACGTTACCAGGATTgg                                                                                                              >  2:403668/1‑151 (MQ=255)
                                     ggcgACCATCTCCATCGCTTTAGTGATCTTTTGCGTGTTCTGGACGCTTGCGATCTTACTACGTATCTCTTTTGCGCCGGCCATGAGCTTCTCCTCAATGCCTTGCGACCTGCCCTAAGGCAAGCCGCCAGACGTTACCAGGATTGGGTTg                                                                                                          <  1:384643/151‑1 (MQ=255)
                                     ggcgACCATCTCCATCGCTTTAGTGATCTTTTGCGTGTTCTGGACGCTTGCGATCTTACTACGTATCTCTTTTGCGCCGGCCATGAGCTTCTCCTCAATGCCTTGCGACCTGCCCTAAGGCAAGCCGCCAGACGTTACCAGGATTGGGTTg                                                                                                          >  1:572983/1‑151 (MQ=255)
                                       ccaCCATCTCCGTCGCTTTAGTGATTTTTCGCGCGTTCTGAACGCTTGCGAACTTACTACGTCTCTGTTTTGCGCCGGCCATGGGCTCCTCCTCAATGCCTTCCGACCTGCCCTAAGGCAAGCCGCCAGACGTTACTAGGAATCGGTTGc                                                                                                         >  2:606561/3‑150 (MQ=255)
                                                 cATCGCTTTAGTGATCTTTTGCGTGTTCTGGACGCTTGCGATCTTACTACGTATCTCTTTTGCGCCGGCCATGAGCTTCTCCTCAATGCCTTGCGACCTGCCCTAAGGCAAGCCGCCAGACGTTACCAGGATTGGGTTGCTTTGAAGGaa                                                                                               >  2:1026621/1‑150 (MQ=255)
                                                  aTCGCTTTAGTGATCTTTTGCGTGTTCTGGACGCTTGCGATCTTACTACGTATCTCTTTTGCGCCGGCCATGAGCTTCTCCTCAATGCCTTGCGACCTGCCCTAAGGCAAGCCGCCAGACGTTACCAGGATTGGGTTGCTTTGAAGGAATc                                                                                             >  2:235858/1‑151 (MQ=255)
                                                     gCTTTAGTGATCTTTTGCGTGTTCTGGACGCTTGCGATCTTACTACGTATCTCTTTTGCGCCGGCCATGAGCTTCTCCTCAATGCCTTGCGACCTGCCCTAAGGCAAGCCGCCAGACGTTACCAGGATTGGGTTGCTTTGAAGGAATCGAg                                                                                          <  2:377119/151‑1 (MQ=255)
                                                         tAGTGATCTTTTGCGTGTTCTGGACGCTTGCGATCTTACTACGTATCTCTTTTGCGCCGGCCATGAGCTTCTCCTCAATGCCTTGCGACCTGCCCTAAGGCAAGCCGCCAGACGTTACCAGGATTGGGTTGCTTTGAAGGAATCGAGGAt                                                                                       <  1:614996/150‑1 (MQ=255)
                                                          aGTGATCTTTTGCGTGTTCTGGACGCTTGCGATCTTAATACGTATCTCTTTTTCGCCGGCCATGAGCTTCTTCTCAATGCCGTGCGAGCTGCCCTAAGGCAAGCGGCCAGACGTTACCAGGATGGGGTTGCTTTGAAGGAATCGAGGATGc                                                                                     <  2:797053/151‑1 (MQ=255)
                                                           gTGATCTTTTGCGTGTTCTGGACGCTTGCGATCTTACTACGTATCTCTTTTGCGCCGGCCATGAGCTTCTCCTCAATGCCTTGCGACCTGCCCTAAGGCAAGCCGCCAGACGTTACCAGGATTGGGTTGCTTTGAAGGAATCGAGGATGcc                                                                                    >  1:93155/1‑151 (MQ=255)
                                                           gTGATCTTTTGCGTGTTCTGGACGCTTGCGATCTTACTACGTATCTCTTTTGCGCCGGCCATGAGCTTCTCCTCAATGCCTTGCGACCTGCCCTAAGGCAAGCCGCCAGACGTTACCAGGATTGGGTTGCTTTGAAGGAATCGAGGATGcc                                                                                    >  1:590215/1‑151 (MQ=255)
                                                            tGATCTTTTGCGTGTTCTGGACGCTTGCGATCTTACTACGTATCTCTTTTGCGCCGGCCATGAGCTTCTCCTCAATGCCTTGCGACCTGCCCTAAGGCAAGCCGCCAGACGTTACCAGGATTGGGTTGCTTTGAAGGAATCGAGGATGCCt                                                                                   >  2:942314/1‑151 (MQ=255)
                                                               tCTTTTGCGTGTTCTGGACGCTTGTGATCTTACTCCGTATCTCTTTTGCGCCGGCCATGAGCTTCTCCTCAATGCCTTGCGACCTGCCCTAAGGCAAGCCGCCAGACGTTACCAGGATTGGGTTGCTTTGAAGGAATCGAGGATGCCttt                                                                                 >  2:447837/1‑150 (MQ=255)
                                                                cTTTTGCGTGTTCTGGACGCTTGCGATCTTACTACGTATCTCTTTTGCGCCGGCCATGAGCTTCTCCTCAATGCCTTGCGACCTGCCCTAAGGCAAGCCGCCAGACGTTACCAGGATTGGGTTGCTTTGAAGGAATCGAGGATGCCTTTc                                                                                >  1:174045/1‑150 (MQ=255)
                                                                  tttGCGTGTTCTGGACGCTTGCGATCTTACTACGTATCTCTTTTGCGCCGGCCATGAGCTTCTCCTCAATGCCTTGCGACCTGCCCTAAGGCAAGCCGCCAGACGTTACCAGGATTGGGTTGCTTTGAAGGAATCGAGGATGCCTTTCAg                                                                              <  1:319933/150‑1 (MQ=255)
                                                                  tttGCGTGTTCTGGACGCTTGCGATCTTACTACGTATCTCTTTTGCGCCGGCCATGAGCTTCTCCTCAATGCCTTGCGACCTGCCCTAAGGCAAGCCGCCAGACGTTACCAGGATTGGGTTGCTTTGAAGGAATCGAGGATGCCTTTCAGc                                                                             >  2:641438/1‑151 (MQ=255)
                                                                    tGCGTGTTCTGGACGCTTGCGATCTTACTACGTATCTCTTTTGCGCCGGCCATGAGCTTCTCCTCAATGCCTTGCGACCTGCCCTAAGGCAAGCCGCCAGACGTTACCAGGATTGGGTTGCTTTGAAGGAATCGAGGATGCCTTTCAGCtt                                                                           >  2:145587/1‑151 (MQ=255)
                                                                        tgtTCTGGACGCTTGCGATCTTACTACGTATCTCTTTTGCGCCGGCCATGAGCTTCTCCTCAATGCCTTGCGACCTGCCCTAAGGCAAGCCGCCAGACGTTACCAGGATTGGGTTGCTTTGAAGGAATCGAGGATGCCTTTCAGCTTGCCt                                                                       >  2:543754/1‑151 (MQ=255)
                                                                             tGGACGCTTGCGATCTTACTACGTATCTCTTTTGCGCCGGCCATGAGCTTCTCCTCAATGCCTTGCGACCTGCCCTAAGGCAAGCCGCCAGACGTTACCAGGATTGGGTTGCTTTGAAGGAATCGAGGATGCCTTTCAGCTTGCCTTCGAt                                                                  >  1:520715/1‑151 (MQ=255)
                                                                               gACGCTTGCGATCTTACTACGTATCTCTTTTGCGCCGGCCATGAGCTTCTCCTCAATGCCTTGCGACCTGCCCTAAGGCAAGCCGCCAGACGTTACCAGGATTGGGTTGCTTTGAAGGAATCGAGGATGCCTTTCAGCTTGCCTTCGAttt                                                                >  1:872201/1‑151 (MQ=255)
                                                                                  gCTTGCGATCTTACTACGTATCTCTTTTGCGCCGGCCATGAGCTTCTCCTCAATGCCTTGCGACCTGCCCTAAGGCAAGCCGCCAGACGTTACCAGGATTGGGTTGCTTTGAAGGAATCGAGGATGCCTTTCAGCTTGCCTTCGATTtcgt                                                             >  2:649348/1‑151 (MQ=255)
                                                                                  gCTTGCGATCTTACTACGTATCTCTTTTGCGCCGGCCATGAGCTTCTCCTCAATGCCTTGCGACCTGCCCTAAGGCAAGCCGCCAGACGTTACCAGGATTGGGTTGCTTTGAAGGAATCGAGGATGCCTTTCAGCTTGCCTTCGATTtcgt                                                             <  1:347422/151‑1 (MQ=255)
                                                                                     tGCGATCTTACTCCGTATCTCTTTTGCGCCGGCCATGAGCTTCTCCTCAATGCTTTGCGACCTGCCCGAAGGCAAGTCGCCATACGTTACCAGGATTTGGTTGCTTTGAAGGAATCGAGGATGCCTTTCAGCTTGTCTTCGATTtcgtcg                                                           <  2:169385/150‑1 (MQ=255)
                                                                                     tGCGATCTTACTACGTATCTCTTTTGCGCCGGCCATGAGCTTCTCCTCAATGCCTTGCGACCTGCCCTAAGGCAAGCCGCCAGACGTTACCAGGATTGGGTTGCTTTGAAGGAATCGAGGATGCCTTTCAGCTTGCCTTCGATTtcgtcg                                                           <  1:1067586/150‑1 (MQ=255)
                                                                                     tGCGATCTTACTACGTATCTCTTTTGCGCCGGCCATGAGCTTCTCCTCAATGCCTTGCGACCTGCCCTAAGGCAAGCCGCCAGACGTTACCAGGATTGGGTTGCTTTGAAGGAATCGAGGATGCCTTTCAGCTTGCCTTCGATTTcgtcgt                                                          >  2:345360/1‑151 (MQ=255)
                                                                                          tCTTACTACGTATCTCTTTTGCGCCGGCCATGAGCTTCTCCTCAATGCCTTGCGACCTGCCCTAAGGCAAGCCGCCAGACGTTACCAGGATTGGGTTGCTTTGAAGGAATCGAGGATGCCTTTCAGCTTGCCTTCGATTTCGTCGTTGt                                                       >  1:1024409/1‑149 (MQ=255)
                                                                                           tttACTACGTATCTTTTTTGCGCCGGCCATGAGCTTCTCCTCAATGCCTTGCGACCTGCCCTAAGGCAAGCCGCCAGACGTTACCAGGCTTGGGTTGCTTTGAAGGAATCGAGGATGCCTTTCAGCTTGCCTTCGATTTCGTCGTTGTAGc                                                    >  2:759740/2‑151 (MQ=255)
                                                                                                  cGTATCTCTTTTGCGCCGGCCATGAGCTTCTCCTCAATGCCTTGCGACCTGCCCTAAGGCAAGCCGCCAGACGTTACCAGGATTGGGTTGCTTTGAAGGAATCGAGGATGCCTTTCAGCTTGCCTTCGATTTCGTCGTTGTAGCCACCGGt                                             <  2:314388/151‑1 (MQ=255)
                                                                                                   gTATCTCTTTTGCGCCGGCCATGAGCTTCTCCTCAATGCCTTGCGACCTGCCCTAAGGCAAGCCGCCAGACGTTACCAGGATTGGGTTGCTTTGAAGGAATCGAGGATGCCTTTCAGCTTGCCTTCGATTTCGTCGTTGTAGCCACCGGTc                                            <  2:769112/151‑1 (MQ=255)
                                                                                                       ctctTTTGCGCCGGCCATGAGCTTCTCCTCAATGCCTTGCGACCTGCCCTAAGGCAAGCCGCCAGACGTTACCAGGATTGGGTTGCTTTGAAGGAATCGAGGATGCCTTTCAGCTTGCCTTCGATTTCGTCGTTGTAGCCACCGGTCTGGt                                        >  1:940915/1‑151 (MQ=255)
                                                                                                         ctTTTGCGCCGGCCATGAGCTTCTCCTCAATGCCTTGCGACCTGCCCTAAGGCAAGCCGCCAGACGTTACCAGGATTGGGTTGCTTTGAAGGAATCGAGGATGCCTTTCAGCTTGCCTTCGATTTCGTCGTTGTAGCCACCGGTCTg                                          <  2:847605/147‑1 (MQ=255)
                                                                                                         ctTTTGCGCCGGCCATGAGCTTCTCCTCAATGCCTTGCGACCTGCCCTAAGGCAAGCCGCCAGACGTTACCAGGATTGGGTTGCTTTGAAGGAATCGAGGATGCCTTTCAGCTTGCCTTCGATTTCGTCGTTGTAGCCACCGGTCTGGt                                        <  1:370008/149‑1 (MQ=255)
                                                                                                            ttGCGCCGGCCATGAGCTTCTCCTCAATGCCTTGCGACCTGCCCTAAGGCAAGCCGCCAGACGTTACCAGGATTGGGTTGCTTTGAAGGAATCGAGGATGCCTTTCAGCTTGCCTTCGATTTCGTCGTTGTAGCCACCGGTCTGGTTGaa                                    <  1:78517/150‑2 (MQ=255)
                                                                                                            ttGCGCCGGCCATGAGCTTCTCCTCAATGCCTTGCGACCTGCCCTAAGGCAAGCCGCCAGACGTTACCAGGATTGGGTTGCTTTGAAGGAATCGAGGATGCCTTTCAGCTTGCCTTCGATTTCGTCGTTGTAGCCACCGGTCTGGTTGAtc                                   >  2:353766/1‑151 (MQ=255)
                                                                                                            ttGCGCCGGCCATGAGCTTCTCCTCAATGCCTTGCGACCTGCCCTAAGGCAAGCCGCCAGACGTTACCAGGATTGGGTTGCTTTGAAGGAATCGAGGATGCCTTTCAGCTTGCCTTCGATTTCGTCGTTGTAGCCACCGGTCTGGTTGAt                                    <  1:78510/150‑1 (MQ=255)
                                                                                                             tGCGCCGGCCATGAGCTTCTCCTCAATGCCTTGCGACCTGCCCTAAGGCAAGCCGCCAGACGTTACCAGGATTGGGTTGCTTTGAAGGAATCGAGGATGCCTTTCAGCTTGCCTTCGATTTCGTCGTTGTAGCCACCGGTCTGGTTGAtct                                  >  1:162237/1‑151 (MQ=255)
                                                                                                                gcCGGCCATGAGCTTCTCCTCAATGCCTTGCGACCTGCCCTAAGGCAAGCCGCCAGACGTTACCAGGATTGGGTTGCTTTGAAGGAATCGAGGATGCCTTTCAGCTTGCCTTCGATTTCGTCGTTGTAGCCACCGGTCTGGTTGATCTCtt                               >  1:593152/1‑151 (MQ=255)
                                                                                                                gcCGGCCATGAGCTTCTCCTCAATGCCTTGCGACCTGCCCTAAGGCAAGCCGCCAGACGTTACCAGGATTGGGTTGCTTTGAAGGAATCGAGGATGCCTTTCAGCTTGCCTTCGATTTCGTCGTTGTAGCCACCGGTCTGGTTGATCTCtt                               >  2:593756/1‑151 (MQ=255)
                                                                                                                   ggCCATGAGCTTCTCCTCAATGCCTTGCGACCTGCCCTAAGGCAAGCCGCCAGACGTTACCAGGATTGGGTTGCTTTGAAGGAATCGAGGATGCCTTTCAGCTTGCCTTCGATTTCGTCGTTGTAGCCACCGGTCTGGTTGATCTCTTGc                             >  1:294582/1‑150 (MQ=255)
                                                                                                                       aTGAGCTTCTCCTCAATGCCTTGCGACCTGCCCTAAGGCAAGCCGCCAGACGTTACCAGGATTGGGTTGCTTTGAAGGAATCGAGGATGCCTTTCAGCTTGCCTTCGATTTCGTCGTTGTAGCCACCGGTCTGGTTGATCTCTTGCATCaa                        <  2:856202/151‑1 (MQ=255)
                                                                                                                           gCTTCTCCTCAATGCCTTGCGACCTGCCCTAAGGCAAGCCGCCAGACGTTACCAGGATTGGGTTGCTTTGAAGGAATCGAGGATGCCTTTCAGCTTGCCTTCGATTTCGTCGTTGTAGCCACCGGTCTGGTTGATCTCTTGCATCAACGGa                    <  1:206879/151‑1 (MQ=255)
                                                                                                                            cTTCTCCTCAATGCCTTGCGACCTGCCCTAAGGCAAGCCGCCAGACGTTACCAGGATTGGGTTGCTTTGAAGGAATCGAGGATGCCTTTCAGCTTGCCTTCGATTTCGTCGTTGTAGCCACCGGTCTGGTTGATCTCTTGCATCAACgg                     >  2:1065904/1‑149 (MQ=255)
                                                                                                                             ttCTCCTCAATGCCTTGCGACCTGCCCTAAGGCAAGCCGCCAGACGTTACCAGGATTGGGTTGCTTTGAAGGAATCGAGGATGCCTTTCAGCTTGCCTTCGATTTCGTCGTTGTAGCCACCGGTCTGGTTGATCTCTTGCATCAACGGAGc                  >  2:265053/1‑151 (MQ=255)
                                                                                                                               ctcctcAATGCCTTGCGACCTGCCCTAAGGCAAGCCGCCAGACGTTACCAGGATTGGGTTGCTTTGAAGGAATCGAGGATGCCTTTCAGCTTGCCTTCGATTTCGTCGTTGTAGCCACCGGTCTGGTTGATCTCTTGCATCAACGGAGCGt                >  1:7942/1‑151 (MQ=255)
                                                                                                                                  ctcAATGCCTTGCGACCTGCCCTAAGGCAAGCCGCCAGACGTTACCAGGATTGGGTTGCTTTGAAGGAATCGAGGATGCCTTTCAGCTTGCCTTCGATTTCGTCGTTGTAGCCACCGGTCTGGTTGATCTCTTGCATCAACGGAGCGTGAt             >  1:742701/1‑151 (MQ=255)
                                                                                                                                    cAATGCCTTGCGACCTGCCCTAAGGCAAGCCGCCAGACGTTACCAGGATTGGGTTGCTTTGAAGGAATCGAGGATGCCTTTCAGCTTGCCTTCGATTTCGTCGTTGTAGCCACCGGTCTGGTTGATCTCTTGCATCAACGGAGCGTGATc            >  1:266627/1‑150 (MQ=255)
                                                                                                                                      aTGCCTTGCGACCTGCCCTAAGGCAAGCCGCCAGACGTTACCAGGATTGGGTTGCTTTGAAGGAATCGAGGATGCCTTTCAGCTTGCCTTCGATTTCGTCGTTGTAGCCACCGGTCTGGTTGATCTCTTGCATCAACGGAGCGTGATCACg         <  2:896111/151‑1 (MQ=255)
                                                                                                                                         ccTTGCGACCTGCCCTAAGGCAAGCCGCCAGACGTTACCAGGATTGGGTTGCTTTGAAGGAATCGAGGATGCCTTTCAGCTTGCCTTCGATTTCGTCGTTGTAGCCACCGGTCTGGTTGATCTCTTGCATCAACGGAGCGTGATCACGGTc      >  2:703596/1‑151 (MQ=255)
                                                                                                                                          cTTGCGACCTGCCCTAAGGCAAGCCGCCAGACGTTACCAGGATTGGGTTGCTTTGAAGGAATCGAGGATGCCTTTCAGCTTGCCTTCGATTTCGTCGTTGTAGCCACCGGTCTGGTTGATCTCTTGCATCAACGGAGCGTGATCACGGTCg     >  1:283825/1‑151 (MQ=255)
                                                                                                                                           ttGCGACCTGCCCTAAGGCAAGCCGCCAGACGTTACCAGGATTGGGTTGCTTTGAAGGAATCGAGGATGCCTTTCAGCTTGCCTTCGATTTCGTCGTTGTAGCCACCGGTCTGGTTGATCTCTTGCATCAACGGAGCGTGATCACGGTCg     >  2:88146/1‑150 (MQ=255)
                                                                                                                                            tGCGACCTGCCCTAAGGCAAGCCGCCAGACGTTACCAGGATTGGGTTGCTTTGAAGGAATCGAGGATGCCTTTCAGCTTGCCTTCGATTTCGTCGTTGTAGCCACCGGTCTGGTTGATCTCTTGCATCAACGGAGCGTGATCACGGTCg     <  1:595374/149‑1 (MQ=255)
                                                                                                                                             gCGACCTGCCCTAAGGCAAGCCGCCAGACGTTACCAGGATTGGGTTGCTTTGAAGGAATCGAGGATGCCTTTCAGCTTGCCTTCGATTTCGTCGTTGTAGCCACCGGTCTGGTTGATCTCTTGCATCAACGGAGCGTGATCACGGTCGACg  <  2:776193/151‑1 (MQ=255)
                                                                                                                                                |                                                                                                                                                   
CCGCCATGCGATCCTGCGATTTACGCATTTTGGAAGCGGCGACCATCTCCATCGCTTTAGTGATCTTTTGCGTGTTCTGGACGCTTGCGATCTTACTACGTATCTCTTTTGCGCCGGCCATGAGCTTCTCCTCAATGCCTTGCGGCCTGCCCTAAGGCAAGCCGCCAGACGTTACCAGGATTGGGTTGCTTTGAAGGAATCGAGGATGCCTTTCAGCTTGCCTTCGATTTCGTCGTTGTAGCCACCGGTCTGGTTGATCTCTTGCATCAACGGAGCGTGATCACGGTCGACG  >  NC_000913/3918145‑3918436

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A