Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A0 F0 I1 R1 4926 296.4 4517418 96.8% 4372860 264.2

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA CP042583 1,638,305 3 bp→TGA intergenic (–/–) – / – –/–

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0425831,638,3050AT99.6% 579.5 / NA 244intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base A (0/0);  major base T (124/118);  minor base C (0/1);  total (124/120)
Fisher's exact test for biased strand distribution p-value = 4.90e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*CP0425831,638,3060CG100.0% 583.4 / NA 244intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base G (124/120);  total (124/120)
*CP0425831,638,3070TA99.6% 584.4 / NA 244intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base T (0/0);  major base A (124/119);  minor base C (0/1);  total (124/120)
Fisher's exact test for biased strand distribution p-value = 4.92e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 244 total aligned reads displayed.

CGCCTGACGCCATTGATTGCCGTATTCGTCAGCCTGCCATTCCCCGTTTACAGTGAGCGCCTTGATACCTTCTTCACTTAATGTGGCTAGCGCCAGCCGTTGACCTGCCGCCAGGTAGAGCGTGTTTTCACTGCCCTGCATTTGATAACCCTGCAACAGAACGATCGGCTGTTTGCCACTGGCATCAACGACGGTGAGATCGGTTCCAGGATTCACGGTAGCCAGCTCGCCTATGTGAGAAGTTTTGAAAGGATAAATATGTGCGCCATTAGTAACACTAGTAGCGGCCTGACTTTCCAGCTCATGCGCCGCGTTGTCATCCATTTTTATTTCTGGCGGAAAATGGGCAATGCCTTTATGACAATCGATACAGGTTTCGCTGTCCTTTTGTGCTTTGTTATGCATTTTCTGCGCAGATTCACTTTGGCTGGCAATATCCATGGCATCAAAAGAATGGCAACTACGGCACGTTGCAGAGTCAGTGGCTTTTAATTCTTTCCATACTGTTTCGGCCATTTCCTGGCGATGAGCTTCGAACTTATCGTCACTGTCTATT  >  CP042583/1638029‑1638584
                                                                                                                                                                                                                                                                                    |||                                                                                                                                                                                                                                                                                     
cGCCTGACGCCATTGATTGCCGTATTCGTCAGCCTGCCATTCCCCGTTTACAGTGAGCGCCTTGATACCTTCTTCACTTAATGTGGCTAGCGCCAGCCGTTGACCTGCCGCCAGGTAGAGCGTGTTTTCACTGCCCTGCATTTGATAACCCTGCAACAGAACGATCGGCTGTTTGCCACTGGCATCAACGACGGTGAGATCGGTTCCAGGATTCACGGTAGCCAGCTCGCCTATGTGAGAAGTTTTGAAAGGATAAATATGTGCGCCATTAGTAACTGAAGTAGCgg                                                                                                                                                                                                                                                                               >  1:1142365/1‑287 (MQ=255)
cGCCTGACGCCATTGATTGCCGTATTCGTCAGCCTGCCATTCCCCGTTTACAGTGAGCGCCTTGATACCTTCTTCACTTAATGTGGCTAGCGCCAGCCGTTGACCTGCCGCCAGGTAGAGCGTGTTTTCACTGCCCTGCATTTGATAACCCTGCAACAGAACGATCGGCTGTTTGCCACTGGCATCAACGACGGTGAGATCGGTTCCAGGATTCACGGTAGCCAGCTCGCCTATGTGAGAAGTTTTGAAAGGATAAATATGTGCGCCATTAGTAACTGAAGTAGCgg                                                                                                                                                                                                                                                                               >  1:678407/1‑287 (MQ=255)
  ccTGACGCCATTGATTGCCGTATTCGTCAGCCTGCCATTCCCCGTTTACAGTGAGCGCCTTGATACCTTCTTCACTTAATGTGGCTAGCGCCAGCCGTTGACCTGCCGCCAGGTAGAGCGTGTTTTCACTGCCCTGCATTTGATAACCCTGCAACAGAACGATCGGCTGTTTGCCACTGGCATCAACGACGGTGAGATCGGTTCCAGGATTCACGGTAGCCAGCTCGCCTATGTGAGAAGTTTTGAAAGGATAAATATGTGCGCCATTAGTAACTGAAGTAGCGGCCTg                                                                                                                                                                                                                                                                           >  1:544762/1‑289 (MQ=255)
   cTGACGCCATTGATTGCCGTATTCGTCAGCCTGCCATTCCCCGTTTACAGTGAGCGCCTTGATACCTTCTTCACTTAATGTGGCTAGCGCCAGCCGTTGACCTGCCGCCAGGTAGAGCGTGTTTTCACTGCCCTGCATTTGATAACCCTGCAACAGAACGATCGGCTGTTTGCCACTGGCATCAACGACGGTGAGATCGGTTCCAGGATTCACGGTAGCCAGCTCGCCTATGTGAGAAGTTTTGAAAGGATAAATATGTGCGCCATTAGTAACTGAAGTAGCGGCCTGa                                                                                                                                                                                                                                                                          <  1:991268/289‑1 (MQ=255)
          cATTGATTGCCGTATTCGTCAGCCTGCCATTCCCCGTTTACAGTGAGCGCCTTGATACCTTCTTCACTTAATGTGGCTAGCGCCAGCCGTTGACCTGCCGCCAGGTAGAGCGTGTTTTCACTGCCCTGCATTTGATAACCCTGCAACAGAACGATCGGCTGTTTGCCACTGGCATCAACGACGGTGAGATCGGTTCCAGGATTCACGGTAGCCAGCTCGCCTATGTGAGAAGTTTTGAAAGGATAAATATGTGCGCCATTAGTAACTGAAGTAGCGGCCTGACTTTcc                                                                                                                                                                                                                                                                    <  1:486197/288‑1 (MQ=255)
          acttgcttgcCGTATTCGTCCGCCTGCCATTCCCCGTTTACAGGGAGCGCCTTGATACCTTCTTCACTTAATGTGGCTAGCGCCAGCCGTTGACCTGCCGCCAGGTAGAGCGTGTTTTCACTGCCCTGCATTTGATAACCCTGCAACAGAACGATCGGCTGTTTGCCACTGGCATCAACGACGGTGAGATCGGTTCCAGGATTCACGGTAGCCAGCTCGCCTATGTGAGAAGTTTTGAAAGGATAAATATGTGCGCCATTAGTAACTGAAGTAGCGGCCTGACTTTcc                                                                                                                                                                                                                                                                    <  2:2065120/286‑1 (MQ=255)
                    cGTATTCGTCAGCCTGCCATTCCCCGTTTACAGTGAGCGCCTTGATACCTTCTTCACTTAATGTGGCTAGCGCCAGCCGTTGACCTGCCGCCAGGTAGAGCGTGTTTTCACTGCCCTGCATTTGATAACCCTGCAACAGAACGATCGGCTGTTTGCCACTGGCATCAACGACGGTGAGATCGGTTCCAGGATTCACGGTAGCCAGCTCGCCTATGTGAGAAGTTTTGAAAGGATAAATATGTGCGCCATTAGTAACTGAAGTAGCGGCCTGACTTTCCAGCTCATgcg                                                                                                                                                                                                                                                          >  1:629537/1‑288 (MQ=255)
                       aTTCGTCAGCCTGCCATTCCCCGTTTACAGTGAGCGCCTTGATACCTTCTTCACTTAATGTGGCTAGCGCCAGCCGTTGACCTGCCGCCAGGTAGAGCGTGTTTTCACTGCCCTGCATTTGATAACCCTGCAACAGAACGATCGGCTGTTTGCCACTGGCATCAACGACGGTGAGATCGGTTCCAGGATTCACGGTAGCCAGCTCGCCTATGTGAGAAGTTTTGAAAGGATAAATATGTGCGCCATTAGTAACTGAAGTAGCGGCCTGACTTTCCAGCTCATGcgccg                                                                                                                                                                                                                                                       <  1:1971880/288‑1 (MQ=255)
                        ttCGTCAGCCTGCCATTCCCCGTTTACAGTGAGCGCCTTGATACCTTCTTCACTTAATGTGGCTAGCGCCAGCCGTTGACCTGCCGCCAGGTAGAGCGTGTTTTCACTGCCCTGCATTTGATAACCCTGCAACAGAACGATCGGCTGTTTGCCACTGGCATCAACGACGGTGAGATCGGTTCCAGGATTCACGGTAGCCAGCTCGCCTATGTGAGAAGTTTTGAAAGGATAAATATGTGCGCCATTAGTAACTGAAGTAGCGGCCTGACTTTCCAGCTCATGCGCcgcg                                                                                                                                                                                                                                                     <  1:510394/289‑1 (MQ=255)
                               gCCTGCCATTCCCCGTTTACAGTGAGCGCCTTGATACCTTCTTCACTTAATGTGGCTAGCGCCAGCCGTTGACCTGCCGCCAGGTAGAGCGTGTTTTCACTGCCCTGCATTTGATAACCCTGCAACAGAACGATCGGCTGTTTGCCACTGGCATCAACGACGGTGAGATCGGTTCCAGGATTCACGGTAGCCAGCTCGCCTATGTGAGAAGTTTTGAAAGGATAAATATGTGCGCCATTAGTAACTGAAGTAGCGGCCTGACTTTCCAGCTCATGCGCCGCGTTGTCAt                                                                                                                                                                                                                                              <  2:547712/289‑1 (MQ=255)
                                ccTGCCATTCCCCGTTTACAGTGAGCGCCTTGATACCTTCTTCACTTAATGTGGCTAGCGCCAGCCGTTGACCTGCCGCCAGGTAGAGCGTGTTTTCACTGCCCTGCATTTGATAACCCTGCAACAGAACGATCGGCTGTTTGCCACTGGCATCAACGACGGTGAGATCGGTTCCAGGATTCACGGTAGCCAGCTCGCCTATGTGAGAAGTTTTGAAAGGATAAATATGTGCGCCATTAGTAACTGAAGTAGCGGCCTGACTTTCCAGCTCATGCGCCGCGTTGTCAt                                                                                                                                                                                                                                              >  2:1703873/1‑288 (MQ=255)
                                  tGCCATTCCCCGTTTACAGTGAGCGCCTTGATACCTTCTTCACTTAATGTGGCTAGCGCCAGCCGTTGACCTGCCGCCAGGTAGAGCGTGTTTTCACTGCCCTGCATTTGATAACCCTGCAACAGAACGATCGGCTGTTTGCCACTGGCATCAACGACGGTGAGATCGGTTCCAGGATTCACGGTAGCCAGCTCGCCTATGTGAGAAGTTTTGAAAGGATAAATATGTGCGCCATTAGTAACTGAAGTAGCGGCCTGACTTTCCAGCTCATGCGCCGCGTTGTCATCCa                                                                                                                                                                                                                                           >  1:1596059/1‑289 (MQ=255)
                                                 aCAGTGAGCGCCTTGATACCTTCTTCACTTAATGTGGCTAGCGCCAGCCGTTGACCTGCCGCCAGGTAGAGCGTGTTTTCACTGCCCTGCATTTGATAACCCTGCAACAGAACGATCGGCTGTTTGCCACTGGCATCAACGACGGTGAGATCGGTTCCAGGATTCACGGTAGCCAGCTCGCCTATGTGAGAAGTTTTGAAAGGATAAATATGTGCGCCATTAGTAACTGAAGTAGCGGCCTGACTTTCCAGCTCATGCGCCGCGTTGTCATCCATTTTTATTTCTGGCg                                                                                                                                                                                                                            >  1:886301/1‑289 (MQ=255)
                                                    gTGAGCGCCTTGATACCTTCTTCACTTAATGTGGCTAGCGCCAGCCGTTGACCTGCCGCCAGGTAGAGCGTGTTTTCACTGCCCTGCATTTGATAACCCTGCAACAGAACGATCGGCTGTTTGCCACTGGCATCAACGACGGTGAGATCGGTTCCAGGATTCACGGTAGCCAGCTCGCCTATGTGAGAAGTTTTGAAAGGATAAATATGTGCGCCATTAGTAACTGAAGTAGCGGCCTGACTTTCCAGCTCATGCGCCGCGTTGTCATCCATTTTTATTTCTGGCGGaa                                                                                                                                                                                                                         >  1:1172166/1‑289 (MQ=255)
                                                      gAGCGCCTTGATACCTTCTTCACTTAATGTGGCTAGCGCCAGCCGTTGACCTGCCGCCAGGTAGAGCGTGTTTTCACTGCCCTGCATTTGATAACCCTGCAACAGAACGATCGGCTGTTTGCCACTGGCATCAACGACGGTGAGATCGGTTCCAGGATTCACGGTAGCCAGCTCGCCTATGTGAGAAGTTTTGAAAGGATAAATATGTGCGCCATTAGTAACTGAAGTAGCGGCCTGACTTTCCAGCTCATGCGCCGCGTTGTCATCCATTTTTATTTCTGGCGGaaaa                                                                                                                                                                                                                       >  2:624711/1‑289 (MQ=255)
                                                              tGATACCTTCTTCACTTAATGTGGCTAGCGCCAGCCGTTGACCTGCCGCCAGGTAGAGCGTGTTTTCACTGCCCTGCATTTGATAACCCTGCAACAGAACGATCGGCTGTTTGCCACTGGCATCAACGACGGTGAGATCGGTTCCAGGATTCACGGTAGCCAGCTCGCCTATGTGAGAAGTTTTGAAAGGATAAATATGTGCGCCATTAGTAACTGAAGTAGCGGCCTGACTTTCCAGCTCATGCGCCGCGTTGTCATCCATTTTTATTTCTGGCGGAAAATGGGCAAt                                                                                                                                                                                                               <  2:2037527/289‑1 (MQ=255)
                                                              tGATACCTTCTTCACTTAATGTGGCTAGCGCCAGCCGTTGACCTGCCGCCAGGTAGAGCGTGTTTTCACTGCCCTGCATTTGATAACCCTGCAACAGAACGATCGGCTGTTTGCCACTGGCATCAACGACGGTGAGATCGGTTCCAGGATTCACGGTAGCCAGCTCGCCTATGTGAGAAGTTTTGAAAGGATAAATATGTGCGCCATTAGTAACTGAAGTAGCGGCCTGACTTTCCAGCTCATGCGCCGCGTTGTCATCCATTTTTATTTCTGGCGGAAAATGGGCAAt                                                                                                                                                                                                               <  1:13999/289‑1 (MQ=255)
                                                                      tcttcACTTAATGTGGCTAGCGCCAGCCGTTGACCTGCCGCCAGGTAGAGCGTGTTTTCACTGCCCTGCATTTGATAACCCTGCAACAGAACGATCGGCTGTTTGCCACTGGCATCAACGACGGTGAGATCGGTTCCAGGATTCACGGTAGCCAGCTCGCCTATGTGAGAAGTTTTGAAAGGATAAATATGTGCGCCATTAGTAACTGAAGTAGCGGCCTGACTTTCCAGCTCATGCGCCGCGTTGTCATCCATTTTTATTTCTGGc                                                                                                                                                                                                                             >  1:1731992/1‑267 (MQ=255)
                                                                      tcttcACTTAATGTGGCTAGCGCCAGCCGTTGACCTGCCGCCAGGTAGAGCGTGTTTTCACTGCCCTGCATTTGATAACCCTGCAACAGAACGATCGGCTGTTTGCCACTGGCATCAACGACGGTGAGATCGGTTCCAGGATTCACGGTAGCCAGCTCGCCTATGTGAGAAGTTTTGAAAGGATAAATATGTGCGCCATTAGTAACTGAAGTAGCGGCCTGACTTTCCAGCTCATGCGCCGCGTTGTCATCCATTTTTATTTCTGGCGGAAAATGGGCAATGCCTTTAt                                                                                                                                                                                                       >  1:219849/1‑289 (MQ=255)
                                                                        ttcACTTAATGTGGCTAGCGCCAGCCGTTGACCTGCCGCCAGGTAGAGCGTGTTTTCACTGCCCTGCATTTGATAACCCTGCAACAGAACGATCGGCTGTTTGCCACTGGCATCAACGACGGTGAGATCGGTTCCAGGATTCACGGTAGCCAGCTCGCCTATGTGAGAAGTTTTGAAAGGATAAATATGTGCGCCATTAGTAACTGAAGTAGCGGCCTGACTTTCCAGCTCATGCGCCGCGTTGTCATCCATTTTTATTTCTGGCGGAAAATGGGCAATGCCTTTATg                                                                                                                                                                                                      >  1:102140/1‑288 (MQ=255)
                                                                              tAATGTGGCTAGCGCCAGCCGTTGACCTGCCGCCAGGTAGAGCGTGTTTTCACTGCCCTGCATTTGATAACCCTGCAACAGAACGATCGGCTGTTTGCCACTGGCATCAACGACGGTGAGATCGGTTCCAGGATTCACGGTAGCCAGCTCGCCTATGTGAGAAGTTTTGAAAGGATAAATATGTGCGCCATTAGTAACTGAAGTAGCGGCCTGACTTTCCAGCTCATGCGCCGCGTTGTCATCCATTTTTATTTCTGGc                                                                                                                                                                                                                             <  2:380110/259‑1 (MQ=255)
                                                                              tAATGTGGCTAGCGCCAGCCGTTGACCTGCCGCCAGGTAGAGCGTGTTTTCACTGCCCTGCATTTGATAACCCTGCAACAGAACGATCGGCTGTTTGCCACTGGCATCAACGACGGTGAGATCGGTTCCAGGATTCACGGTAGCCAGCTCGCCTATGTGAGAAGTTTTGAAAGGATAAATATGTGCGCCATTAGTAACTGAAGTAGCGGCCTGACTTTCCAGCTCATGCGCCGCGTTGTCATCCATTTTTATTTCTGGc                                                                                                                                                                                                                             >  1:380110/1‑259 (MQ=255)
                                                                                  gtgGCTAGCGCCAGCCGTTGACCTGCCGCCAGGTAGAGCGTGTTTTCACTGCCCTGCATTTGATAACCCTGCAACAGAACGATCGGCTGTTTGCCACTGGCATCAACGACGGTGAGATCGGTTCCAGGATTCACGGTAGCCAGCTCGCCTATGTGAGAAGTTTTGAAAGGATAAATATGTGCGCCATTAGTAACTGAAGTAGCGGCCTGACTTTCCAGCTCATGCGCCGCGTTGTCATCCATTTTTATTTCTGGCGGAAAATGGGCAATGCCTTTATGACAATCGATAc                                                                                                                                                                                           <  1:2000356/289‑1 (MQ=255)
                                                                                     gCTAGCGCCAGCCGTTGACCTGCCGCCAGGTAGAGCGTGTTTTCACTGCCCTGCATTTGATAACCCTGCAACAGAACGATCGGCTGTTTGCCACTGGCATCAACGACGGTGAGATCGGTTCCAGGATTCACGGTAGCCAGCTCGCCTATGTGAGAAGTTTTGAAAGGATAAATATGTGCGCCATTAGTAACTGAAGTAGCGGCCTGACTTTCCAGCTCATGCGCCGCGTTGTCATCCATTTTTATTTCTGGCGGAAAATGGGCAAt                                                                                                                                                                                                               >  2:680856/1‑266 (MQ=255)
                                                                                     gCTAGCGCCAGCCGTTGACCTGCCGCCAGGTAGAGCGTGTTTTCACTGCCCTGCATTTGATAACCCTGCAACAGAACGATCGGCTGTTTGCCACTGGCATCAACGACGGTGAGATCGGTTCCAGGATTCACGGTAGCCAGCTCGCCTATGTGAGAAGTTTTGAAAGGATAAATATGTGCGCCATTAGTAACTGAAGTAGCGGCCTGACTTTCCAGCTCATGCGCCGCGTTGTCATCCATTTTTATTTCTGGCGGAAAATGGGCAATGCCTTTATGACAATCGATACAgg                                                                                                                                                                                        >  1:1691175/1‑289 (MQ=255)
                                                                                          cgcCAGCCGTTGACCTGCCGCCAGGTAGAGCGTGTTTTCACTGCCCTGCATTTGATAACCCTGCAACAGAACGATCGGCTGTTTGCCACTGGCATCAACGACGGTGAGATCGGTTCCAGGATTCACGGTAGCCAGCTCGCCTATGTGAGAAGTTTTGAAAGGATAAATATGTGCGCCATTAGTAACTGAAGTAGCGGCCTGACTTTCCAGCTCATGCGCCGCGTTGTCATCCATTTTTATTTCTGGCGGAAAATGGTCAATGCCTTTATGACAATCGATACTGGTTTc                                                                                                                                                                                    >  2:1444293/1‑288 (MQ=255)
                                                                                          cgcCAGCCGTTGACCTGCCGCCAGGTAGAGCGTGTTTTCACTGCCCTGCATTTGATAACCCTGCAACAGAACGATCGGCTGTTTGCCACTGGCATCAACGACGGTGAGATCGGTTCCAGGATTCACGGTAGCCAGCTCGCCTATGTGAGAAGTTTTGAAAGGATAAATATGTGCGCCATTAGTAACTGAAGTAGCGGCCTGACTTTCCAGCTCATGCGCCGCGTTGTCATCCATTTTTATTTCTGGCGGAAAATGGGCAAt                                                                                                                                                                                                               >  2:1060991/1‑261 (MQ=255)
                                                                                          cgcCAGCCGTTGACCTGCCGCCAGGTAGAGCGTGTTTTCACTGCCCTGCATTTGATAACCCTGCAACAGAACGATCGGCTGTTTGCCACTGGCATCAACGACGGTGAGATCGGTTCCAGGATTCACGGTAGCCAGCTCGCCTATGTGAGAAGTTTTGAAAGGATAAATATGTGCGCCATTAGTAACTGAAGTAGCGGCCTGACTTTCCAGCTCATGCGCCGCGTTGTCATCCATTTTTATTTCTGGCGGAAAATGGGCAAt                                                                                                                                                                                                               <  1:1060991/261‑1 (MQ=255)
                                                                                             cAGCCGTTGACCTGCCGCCAGGTAGAGCGTGTTTTCACTGCCCTGCATTTGATAACCCTGCAACAGAACGATCGGCTGTTTGCCACTGGCATCAACGACGGTGAGATCGGTTCCAGGATTCACGGTAGCCAGCTCGCCTATGTGAGAAGTTTTGAAAGGATAAATATGTGCGCCATTAGTAACTGAAGTAGCGGCCTGACTTTCCAGCTCATGCGCCGCGTTGTCATCCATTTTTATTTCTGGCGGAAAATGGGCAATGCCTTTATGACAATCGATACAGGTTTCGCTg                                                                                                                                                                                <  1:904506/289‑1 (MQ=255)
                                                                                                  gTTGACCTGCCGCCAGGTAGAGCGTGTTTTCACTGCCCTGCATTTGATAACCCTGCAACAGAACGATCGGCTGTTTGCCACTGGCATCAACGACGGTGAGATCGGTTCCAGGATTCACGGTAGCCAGCTCGCCTATGTGAGAAGTTTTGAAAGGATAAATATGTGCGCCATTAGTAACTGAAGTAGCGGCCTGACTTTCCAGCTCATGCGCCGCGTTGTCATCCATTTTTATTTCTGGCGGAAAATGGGCAATGCCTTTATGACAATCGATACAGGTTTCGCTGTCCtt                                                                                                                                                                           <  1:681969/289‑1 (MQ=255)
                                                                                                   ttgcacagccgccAGGTAGAGCGTGTTTTCACTGCCCTGCATTTTATAACCCTGCAACAGAACGATCGGCTGTTTGCCACTGGCATCAACAACGGTTGGATCGGTTCCAGGATTCACGGTAGCCAGCTCGCCTATGTGAGAAGTTTTGAAAGGATAAAGATGTGCGCCATGATTAACTGAAGTAGCGGCCTGACTTTCCAGCTCATGCGCCGCGTTGTCATCCATTTTTATTTCTGGCGGAAAATGGGCAATGCCTTTATGACAATCGATACAGGTTTCGCTGTCCtt                                                                                                                                                                           <  2:1979772/281‑1 (MQ=255)
                                                                                                         tGCCGCCAGGTAGGGCGTGTTTTCACTGCCCTGCATTGGCTAACCCTGCAACAGAACGATCGGCGGTTTGCCACTGGGATCAAAGACGGTGAGATCGGTTCCAGGATTCACGGTAGCCAGCTCGCCTATGTGAGAAGTTTTGAAAGGAGAAATATGTGCGCCATTAGTAACTGAAGTAGCGGCCTGACTTTCCAGCTCATGCGCCGCGTTGTCATCCATTTTTATTTCTGGCGGAAAATGGGCAATGCCTTTATGACAATCGATACAGGTTTCGCTGTCCTTTTGTGCt                                                                                                                                                                    <  2:471623/289‑1 (MQ=255)
                                                                                                         tGCCGCCAGGTAGAGCGTGTTTTCACTGCCCTGCATTTGATAACCCTGCAACAGAACGATCGGCTGTTTGCCACTGGCATCAACGACGGTGAGATCGGTTCCAGGATTCACGGTAGCCAGCTCGCCTATGTGAGAAGTTTTGAAAGGATAAATATGTGCGCCATTAGTAACTGAAGTAGCGGCCTGACTTTCCAGCTCATGCGCCGCGTTGTCATCCATTTTTATTTCTGGCGGAAAATGGGCAATGCCTTTATGACAATCGATACAGGTTTCGCTGTCCTTTTGTGCt                                                                                                                                                                    <  1:1603167/289‑1 (MQ=255)
                                                                                                          gccgccAGGTAGAGCGTGTTTTCACTGCCCTGCATTTGATAACCCTGCAACAGAACGATCGGCTGTTTGCCACTGGCATCAACGACGGTGAGATCGGTTCCAGGATTCACGGTAGCCAGCTCGCCTATGTGAGAAGTTTTGAAAGGATAAATATGTGCGCCATTAGTAACTGAAGTAGCGGCCTGACTTTCCAGCTCATGCGCCGCGTTGTCATCCATTTTTATTTCTGGCGGaaa                                                                                                                                                                                                                        >  2:1722627/1‑236 (MQ=255)
                                                                                                          gccgccAGGTAGAGCGTGTTTTCACTGCCCTGCATTTGATAACCCTGCAACAGAACGATCGGCTGTTTGCCACTGGCATCAACGACGGTGAGATCGGTTCCAGGATTCACGGTAGCCAGCTCGCCTATGTGAGAAGTTTTGAAAGGATAAATATGTGCGCCATTAGTAACTGAAGTAGCGGCCTGACTTTCCAGCTCATGCGCCGCGTTGTCATCCATTTTTATTTCTGGCGGaaa                                                                                                                                                                                                                        <  1:1722627/236‑1 (MQ=255)
                                                                                                          gccgccAGGTAGAGCGTGTTTTCACTGCCCTGCATTTGATAACCCTGCAACAGAACGATCGGCTGTTTGCCACTGGCATCAACGACGGTGAGATCGGTTCCAGGATTCACGGTAGCCAGCTCGCCTATGTGAGAAGTTTTGAAAGGATAAATATGTGCGCCATTAGTAACTGAAGTAGCGGCCTGACTTTCCAGCTCATGCGCCGCGTTGTCATCCATTTTTATTTCTGGCGGAAAATGGGCAATGCCTTTATGACAATCGATACAGGTTTCGCTGTCCTTTTGTGCtt                                                                                                                                                                   >  2:2228863/1‑289 (MQ=255)
                                                                                                           ccgccAGGTAGAGCGTGTTTTCACTGCCCTGCATTTGATAACCCTGCAACAGAACGATCGGCTGTTTGCCACTGGCATCAACGACGGTGAGATCGGTTCCAGGATTCACGGTAGCCAGCTCGCCTATGTGAGAAGTTTTGAAAGGATAAATATGTGCGCCATTAGTAACTGAAGTAGCGGCCTGa                                                                                                                                                                                                                                                                          <  2:887475/185‑1 (MQ=255)
                                                                                                                     gagCGTGTTTTCACTGCCCTGCATTTGATAACCCTGCAACAGAACGATCGGCTGTTTGCCACTGGCATCAACGACGGTGAGATCGGTTCCAGGATTCACGGTAGCCAGCTCGCCTATGTGAGAAGTTTTGAAAGGATAAATATGTGCGCCATTAGTAACTGAAGTAGCGGCCTGACTTTCCAGCTCATGCGCCGCGTTGTCATCCATTTTTAttt                                                                                                                                                                                                                                  >  1:1282643/1‑215 (MQ=255)
                                                                                                                     gagCGTGTTTTCACTGCCCTGCATTTGATAACCCTGCAACAGAACGATCGGCTGTTTGCCACTGGCATCAACGACGGTGAGATCGGTTCCAGGATTCACGGTAGCCAGCTCGCCTATGTGAGAAGTTTTGAAAGGATAAATATGTGCGCCATTAGTAACTGAAGTAGCGGCCTGACTTTCCAGCTCATGCGCCGCGTTGTCATCCATTTTTATTTCTGGCGGaaaa                                                                                                                                                                                                                       >  2:1614187/1‑226 (MQ=255)
                                                                                                                     gagCGTGTTTTCACTGCCCTGCATTTGATAACCCTGCAACAGAACGATCGGCTGTTTGCCACTGGCATCAACGACGGTGAGATCGGTTCCAGGATTCACGGTAGCCAGCTCGCCTATGTGAGAAGTTTTGAAAGGATAAATATGTGCGCCATTAGTAACTGAAGTAGCGGCCTGACTTTCCAGCTCATGCGCCGCGTTGTCATCCATTTTTATTTCTGGCGGaaaa                                                                                                                                                                                                                       <  1:1614187/226‑1 (MQ=255)
                                                                                                                     gagCGTGTTTTCACTGCCCTGCATTTGATAACCCTGCAACAGAACGATCGGCTGTTTGCCACTGGCATCAACGACGGTGAGATCGGTTCCAGGATTCACGGTAGCCAGCTCGCCTATGTGAGAAGTTTTGAAAGGATAAATATGTGCGCCATTAGTAACTGAAGTAGCGGCCTGACTTTCCAGCTCATGCGCCGCGTTGTCATCCATTTTTATTTCTGGCGGAAAATGGGCAATGCCTTTATGACAATCGATACAGGTTTCGCTGTCCTTTTGTGCt                                                                                                                                                                    <  2:1209610/277‑1 (MQ=255)
                                                                                                                     gagCGTGTTTTCACTGCCCTGCATTTGATAACCCTGCAACAGAACGATCGGCTGTTTGCCACTGGCATCAACGACGGTGAGATCGGTTCCAGGATTCACGGTAGCCAGCTCGCCTATGTGAGAAGTTTTGAAAGGATAAATATGTGCGCCATTAGTAACTGAAGTAGCGGCCTGACTTTCCAGCTCATGCGCCGCGTTGTCATCCATTTTTATTTCTGGCGGAAAATGGGCAATGCCTTTATGACAATCGATACAGGTTTCGCTGTCCTTTTGTGCt                                                                                                                                                                    >  1:1209610/1‑277 (MQ=255)
                                                                                                                      agCGTGTTTTCACTGCCCTGCATTTGATAACCCTGCAACAGAACGATCGGCTGTTTGCCACTGGCATCAACGACGGTGAGATCGGTTCCAGGATTCACGGTAGCCAGCTCGCCTATGTGAGAAGTTTTGAAAGGATAAATATGTGCGCCATTAGTAACTGAAGTAGCGGCCTGACTTTCCAGCTCATGCGCCGCGTTGTCATCCATTTTTATTTCTGGCGGAAAATGGGCAATGCCTTTATGACAATCGATACAGGTTTCGCTg                                                                                                                                                                                <  2:369076/264‑1 (MQ=255)
                                                                                                                        cGTGTTTTCACTGCCCTGCATTTGATAACCCTGCAACAGAACGATCGGCTGTTTGCCACTGGCATCAACGACGGTGAGATCGGTTCCAGGATTCACGGTAGCCAGCTCGCCTATGTGAGAAGTTTTGAAAGGATAAATATGTGCGCCATTAGTAACTGAAGTAGCGGCCTg                                                                                                                                                                                                                                                                           <  2:1314539/171‑1 (MQ=255)
                                                                                                                        cGTGTTTTCACTGCCCTGCATTTGATAACCCTGCAACAGAACGATCGGCTGTTTGCCACTGGCATCAACGACGGTGAGATCGGTTCCAGGATTCACGGTAGCCAGCTCGCCTATGTGAGAAGTTTTGAAAGGATAAATATGTGCGCCATTAGTAACTGAAGTAGCGGCCTg                                                                                                                                                                                                                                                                           >  1:1314539/1‑171 (MQ=255)
                                                                                                                        cGTGTTTTCACTGCCATGCATTTGATAACCCTGCAACAGAACTGTCGGCTGTTTGCCACTGGCATCAACGACGGTGAGATCGGTTCCAGGATTCACGGTAGCCAGCTCGCCTATGTGAGAAGTTTTGAAAGGATAAATATGTGCGCCATTAGTAACTGAAGTAGCGGCCTGACTTTCCAGCTCATGCGCCGCGTTGTCATCCATTTTTATTTCTGGCGGAAAATGGGCAATGCCTTTATGACAATCGATACAGGTTTCGCTGTCCTTTTGTGCTTTGTTATGCAtttt                                                                                                                                                      <  2:1747465/288‑1 (MQ=255)
                                                                                                                          tgtTTTCACTTCCCTGCATTTGATAACCCGGCCACAGAACGATCGGCTGTTTGCCACTGGCATCAACGACGGTGAGATCGGTTCCAGGATTCACGGTAGCCAGCTCGCCTATGTGAGAAGTTTTGAAAGGATAAATATGTGCGCCATTAGTAACTGAAGTAGCGGCCTGACTTTCCAGCTCATGCGCCGCGTTGTCATCCATTTTTATTTCTGGCGGAAAATGGGCAATGCCTTTATGACAATCGATACAGGTTTCGCTGTCCTTTTGTGCTTTGTTATGCATTTTCTg                                                                                                                                                   <  2:1415693/289‑1 (MQ=255)
                                                                                                                           gtTTTCACTGCCCTGCATTTGATAACCCTGCAACAGAACGATCGGCTGTTTGCCACTGGCATCAACGACGGTGAGATCGGTTCCAGGATTCACGGTAGCCAGCTCGCCTATGTGAGAAGTTTTGAAAGGATAAAAATGTGCGCCATTAGTAACTGAAGTCGCGGCCTGACTTTCCAGCTCATGCGCCGCGTTGTCATCCATTTTTATTTCTTGCGGAAAATGGGCAATGCCTTTATGACAATCGATACAGGTTTCGCTGTCCTTTTGTGCTTTGTTATGCATTTTCTgc                                                                                                                                                  >  1:1111397/1‑289 (MQ=255)
                                                                                                                            ttttCACTGCCCTGCATTTGATAACCCTGCAACAGAACGATCGGCTGTTTGCCACTGGCATCAACGACGGTGAGATCGGTTCCAGGATTCACGGTAGCCAGCTCGCCTATGTGAGAAGTTTTGAAAGGATAAATATGTGCGCCATTAGTAACTGAAGTAGCGGCCTGACTTTCCAGCTCATGCGCCGCGTTGTCATCCATTTTTATTTCTGGCGGAAAATGGGCAATGCCTTTATGACAATCGATACAGGTTTCGCTGTCCTTTTGTGCTTTGTTATGCATTTTCTgcg                                                                                                                                                 <  2:629537/289‑1 (MQ=255)
                                                                                                                             tttCACTGCCCTGCATTTGATAACCCTGCAACAGAACGATCGGCTGTTTGCCACTGGCATCAACGACGGTGAGATCGGTTCCAGGATTCACGGTAGCCAGCTCGCCTATGTGAGAAGTTTTGAAAGGATAAATATGTGCGCCATTAGTAACTGAAGTAGCGGCCTGACTTTCCAGCTCATGCGCCGCGTTGTCATCCATTTTTATTTCTGGCGGAAAATGGGCAATGCCTTTATGACAATCGATACAGGTTTCGCTGTCCTTTTGTGCTTTGTTATGCATTTTCTgcg                                                                                                                                                 <  1:1937066/288‑1 (MQ=255)
                                                                                                                              ttCACTGCCCTGCATTTGATAACCCTGCAACAGAACGATCGGCTGTTTGCCACTGGCATCAACGACGGTGAGATCGGTTCCAGGATTCACGGTAGCCAGCTCGCCTATGTGAGAAGTTTTGAAAGGATAAATATGTGCGCCATTAGTAACTGAAGTAGCGGCCTGACTTTCCAGCTCATGCGCCGCGTTGTCATCCATTTTTATTTCTGGCGGAAAATGGGCAATGCCTTTATGACAATCGATACAGGTTTCGCTGTCCTTTTGTGCTTTGTTATGCATTTTCTGCGCa                                                                                                                                               <  2:338056/289‑1 (MQ=255)
                                                                                                                                  cTGACCGGCATTTGAGACACCTGCAACAGGACGGTCGGCTGTTTGGCACTGGCATCAACGACGGTGAGGTCGGTTCCAGGATTCACGGTAGCCAGCTCGCCTATGTGAGAAGTTTTGAAAGGATAAATATGTGCGCCATTAGTAACTGAAGTAGCGGCCTGACTTTCCAGCTCATGCGCCGCGTTGTCATCCATTTTTATTTCTGGCGGAAAATGGGCAATGCCTTTATGACAATCGATACAGGTTTCGCTGTCCTTTTGTGCTTTGTTATGCATTTTCTGCGCAGAtt                                                                                                                                           <  2:1956784/289‑1 (MQ=255)
                                                                                                                                    gCCCTGCATTGGATAAACCTGCAACAGAAGGATAGGCTGTTTGCCACGGGCATCAACGACGGTGAGATCGGTTCCAGGATTCACGGTAGCCAGCTCGCCTATGTGAGAAGTTTTGAAAGGATAAATATGTGCGCCATTAGTAACTGAAGTAGCGGCCTGACTTTCCAGCTCATGCGCCGCGTTGTCATCCATTTTTATTTCTGGCGGAAAATGGGCAATGCCTTTATGACAATCGATACAGGTTTCGCTGTCCTTTTGTGCTTTGTTATGCATTTTCTGCGCAGATTCa                                                                                                                                         <  2:1936758/289‑1 (MQ=255)
                                                                                                                                     cccTGCATTTGATAACCCTGCAACAGAACGATCGGCTGTTTGCCACTGGCATCAACGACGGTGAGATCGGTTCCAGGATTCACGGTAGCCAGCTCGCCTATGTGAGAAGTTTTGAAAGGATAAATATGTGCGCCATTAGTAACTGAAGTAGCGGCCTGACTTTCCAGCTCATGCGCCGCGTTGTCATCCATTTTTATTTCTGGCGGAAAATGGGCAATGCCTTTATg                                                                                                                                                                                                      >  2:1598750/1‑227 (MQ=255)
                                                                                                                                        tGCATTTGATAACCCTGCAACAGAACGATCGGCTGTTTGCCACTGGCATCAACGACGGTGAGATCGGTTCCAGGATTCACGGTAGCCAGCTCGCCTATGTGAGAAGTTTTGAAAGGATAAATATGTGCGCCATTAGTAACTGAAGTAGCGGCCTGACTTTCCAGCTCATGCGCCGCGTTGTCCTCCATTTTTATTTCTGGCGGAAAATGGGCAATGCCTTTATGACAATCGATACAGGTTTCGCTGTCCTTTTTTGCTTTGTTATGCATTTTCTGCGCAGTTTcctttt                                                                                                                                     >  2:25732/1‑284 (MQ=255)
                                                                                                                                           aTTTGATAACCCTGCAACAGAACGATCGGCTGTTTGCCACTGGCATCAACGACGGTGAGATCGGTTCCAGGATTCACGGTAGCCAGCTCGCCTATGTGAGAAGTTTTGAAAGGATAAATATGTGCGCCATTAGTAACTGAAGTAGCGGCCTGACTTTCCAGCTCATGCGCCGCGTTGTCATCCATTTTTATTTCTGGCGGAAAATGGGCAATGCCTTTATGACAATCGATACAGGTTTCGCTGTCCTTTTGTGCTTTGTTATGCATTTTCTGCGCAGATTCACTTtgcg                                                                                                                                  <  1:813238/289‑3 (MQ=255)
                                                                                                                                                 tAACCCTGCAACAGAACGATCGGCTGTTTGCCACTGGCATCAACGACGGTGAGATCGGTTCCAGGATTCACGGTAGCCAGCTCGCCTATGTGAGAAGTTTTGAAAGGATAAATATGTGCGCCATTAGTAACTGAAGTAGCGGCCTGACTTTCCAGCTCATGCGCCGCGTTGTCATCCATTTTTATTTCTGGCGGAAAATGGGCAATGCCTTTATGACAATCGATACAGGTTTCGCTGTCCTTTTGTGCTTTGTTATGCATTTTCTGCGCAGATTCACTTtgcgaggca                                                                                                                             <  1:1470181/288‑8 (MQ=255)
                                                                                                                                                 tAACCCTGCAACAGAACGATCGGCTGTTTGCCACTGGCATCAACGACGGTGAGATCGGTTCCAGGATTCACGGTAGCCAGCTCGCCTATGTGAGAAGTTTTGAAAGGATAAATATGTGCGCCATTAGTAACTGAAGTAGCGGCCTGACTTTCCAGCTCATGCGCCGCGTTGTCATCCATTTTTATTTCTGGCGGAAAATGGGCAATGCCTTTATGACAATCGATACAGGTTTCGCTGTCCTTTTGTGCTTTGTTATGCATTTTCTGCGCAGATTCACTTtgcgaggca                                                                                                                             <  1:2174105/288‑8 (MQ=255)
                                                                                                                                                    cccTGCAACAGAACGATCGGCTGTTTGCCACTGGCATCAACGACGGTGAGATCGGTTCCAGGATTCACGGTAGCCAGCTCGCCTATGTGAGAAGTTTTGAAAGGATAAATATGTGCGCCATTAGTAACTGAAGTAGCGGCCTGACTTTCCAGCTCATGCGCCGCGTTGTCATCCATTTTTATTTCTGGCGGAAAATGGGCAATGCCTTTATGACAATCGATACAGGTTTCGCTGTCCTTTtgtg                                                                                                                                                                      <  2:220656/244‑1 (MQ=255)
                                                                                                                                                    cccTGCAACAGAACGATCGGCTGTTTGCCACTGGCATCAACGACGGTGAGATCGGTTCCAGGATTCACGGTAGCCAGCTCGCCTATGTGAGAAGTTTTGAAAGGATAAATATGTGCGCCATTAGTAACTGAAGTAGCGGCCTGACTTTCCAGCTCATGCGCCGCGTTGTCATCCATTTTTATTTCTGGCGGAAAATGGGCAATGCCTTTATGACAATCGATACAGGTTTCGCTGTCCTTTtgtg                                                                                                                                                                      >  1:220656/1‑244 (MQ=255)
                                                                                                                                                       tGCAACAGAACGATCGGCTGTTTGCCACTGGCATCAACGACGGTGAGATCGGTTCCAGGATTCACGGTAGCCAGCTCGCCTATGTGAGAAGTTTTGAAAGGATAAATATGTGCGCCATTAGTAACTGAAGTAGCGGCCTGACTTTCCAGCTCATGCGCCGCGTTGTCATCCATTTTTATTTCTGGCGGAAAATGGGCAATGCCTTTATGACAATCGATACAGGTTTCGCTGTCCTTTTGTGCTTTGTTATGc                                                                                                                                                           >  2:1647287/1‑252 (MQ=255)
                                                                                                                                                       tGCAACAGAACGATCGGCTGTTTGCCACTGGCATCAACGACGGTGAGATCGGTTCCAGGATTCACGGTAGCCAGCTCGCCTATGTGAGAAGTTTTGAAAGGATAAATATGTGCGCCATTAGTAACTGAAGTAGCGGCCTGACTTTCCAGCTCATGCGCCGCGTTGTCATCCATTTTTATTTCTGGCGGAAAATGGGCAATGCCTTTATGACAATCGATACAGGTTTCGCTGTCCTTTTGTGCTTTGTTATGCATTTTCTGCGCAGATTCACTTTGCGAGGCAATATCCa                                                                                                                      >  2:766783/1‑289 (MQ=255)
                                                                                                                                                        gCAACAGAACGATCGGCTACTTGCGTCTTGCCTCAATGAGGGTTGGATCGGTTCCATGATTCACGGTAGCCAGCTCGCCTATGTGAGAAGTTGTGAAAGGATAAATATTTGAGCCATTAGTAACGGAAGTAGCGGCCTGACTTTCCAGCTCATGCGCCGCGTTGTCATCCATTTTTATTTCTGGCGGAAAATGGGCAATGCCTTTATGACAATCGATACAGGTTTCGCTGTCCTTTTGTGCTTTGTTATGCATTTTCTGCGCAGATTCACTTTGCGAGGCAATATCCAt                                                                                                                     <  2:1121874/289‑1 (MQ=255)
                                                                                                                                                        cacaccgAACGAGCGGCTTTTGGCCACCGGAGTATACGACGATGAGATCGGTTCCAGGATTCACGATAGCCAGCTCGCCTATGTGAGAAGTTTTGAAAGGATAAAGATGTGCGCCATTAGTAACTGAAGTAGCGGCCTGACTTTCCAGCTCATGCGCCGCGTTGTCATCCATTTTTATTTCTGGCGGAAAATGGGCAATGCCTTTATGACAATCGATACAGGTTTCGCTGTCCTTTTGTGCTTTGTTATGCAGTTTCTGCGCAGATTCACTTTGCGAGGCAATATCCAt                                                                                                                     <  2:286878/283‑1 (MQ=255)
                                                                                                                                                         cAACAGAACGATCGGCTGTTTGCCACTGGCATCAACGACGGTGAGATCGGTTCCAGGATTCACGGTAGCCAGCTCGCCTATGTGAGAAGTTTTGAAAGGATAAATATGTGCGCCATTAGTAACTGAAGTAGCGGCCTGACTTTCCAGCTCATGCGCCGCGTTGTCATCCATTTTTATTTCTGGCGGAAAATGGGCAATGCCTTTATGACAATCGATACAGGTTTCGCTGTCCTTTTGTGCTTTGTTATGCATTTTCTGCGCAGATTCACTTTGCGAGGCAATATCCAt                                                                                                                     <  2:1253135/288‑1 (MQ=255)
                                                                                                                                                              gAACGATCGGCTGTTTGCCACTGGCATCAACGACGGTGAGATCGGTTCCAGGATTCACGGTAGCCAGCTCGCCTATGTGAGAAGTTTTGAAAGGATAAATATGTGCGCCATTAGTAACTGAAGTAGCGGCCTGACTTTCCAGCTCATGCGCCGCGTTGTCATCCATTTTTATTTCTGGCGGAAAATGGGCAATGCCTTTATGACAATCGATACAGGTTTCGCTGTCCTTTTGTGCTTTGTTATGCATTTTCTGCGCAGATTCACTTTGCGAGGCAATATCCATGGCATc                                                                                                               >  1:1300681/1‑289 (MQ=255)
                                                                                                                                                               aaCGATCGGCTGTTTGCCACTGGCATCAACGACGGTGAGATCGGTTCCAGGATTCACGGTAGCCATCTCGCCTATGTGAGAAGTTTTGAAAGGATAAATATGTGCGCCATTAGTAACTGAAGTAGCGGCCTGACTTTCCAGCTCATGCGCCGCGTTGTCATCCATTTTTATTTCTGGCGGAAAATGGGCAATGCCTTTATGACAATCGATACAGGTTTCGCTGTCCTTTTGTGCTTTGTTATGCATTTTCTGCGCAGATTCACTTTGCGAGGCAATATCCATGGCATCa                                                                                                              >  2:1052559/1‑289 (MQ=255)
                                                                                                                                                               aaCGATCGGCTGTTTGCCACTGGCATCAACGACGGTGAGATCGGTTCCAGGATTCACGGTAGCCAGCTCGCCTATGTGAGAAGTTTTGAAAGGATAAATATGTGCGCCATTAGTAACTGAAGTAGCGGCCTGACTTTCCAGCTCATGCGCCGCGTTGTCATCCATTTTTATTTCTGGCGGAAAATGGGCAATGCCTTTATGACAATCGATACAGGTTTCGCTGTCCTTTTGTGCTTTGTTATGCATTTTCTGCGCAGATTCACTTTGCGAGGCAATATCCAt                                                                                                                     <  2:1133215/282‑1 (MQ=255)
                                                                                                                                                               aaCGATCGGCTGTTTGCCACTGGCATCAACGACGGTGAGATCGGTTCCAGGATTCACGGTAGCCAGCTCGCCTATGTGAGAAGTTTTGAAAGGATAAATATGTGCGCCATTAGTAACTGAAGTAGCGGCCTGACTTTCCAGCTCATGCGCCGCGTTGTCATCCATTTTTATTTCTGGCGGAAAATGGGCAATGCCTTTATGACAATCGATACAGGTTTCGCTGTCCTTTTGTGCTTTGTTATGCATTTTCTGCGCAGATTCACTTTGCGAGGCAATATCCATGGCATCa                                                                                                              >  1:36749/1‑289 (MQ=255)
                                                                                                                                                               aaCGATCGGCTGTTTGCCACTGGCATCAACGACGGTGAGATCGGTTCCAGGATTCACGGTAGCCAGCTCGCCTATGTGAGAAGTTTTGAAAGGATAAATATGTGCGCCATTAGTAACTGAAGTAGCGGCCTGACTTTCCAGCTCATGCGCCGCGTTGTCATCCATTTTTATTTCTGGCGGAAAATGGGCAATGCCTTTATGACAATCGATACAGGTTTCGCTGTCCTTTTGTGCTTTGTTATGCATTTTCTGCGCAGATTCACTTTGCGAGGCAATATCCATGGCATCa                                                                                                              >  1:2082667/1‑289 (MQ=255)
                                                                                                                                                                 cGATCGGCTGTTTGCCACTGGCATCAACGACGGTGAGATCGGTTCCAGGATTCACGGTAGCCAGCTCGCCTATGTGAGAAGTTTTGAAAGGATAAATATGTGCGCCATTAGTAACTGAAGTAGCGGCCTGACTTTCCAGCTCATGCGCCGCGTTGTCATCCATTTTTATTTCTGGCGGAAAATGGGCAATGCCTTTATGACAATCGATACAGGTTTCGCTGTCCTTTTGTGCTTTGTTATGCATTTTCTGCGCAGATTCACTTTGCGAGGCAATATCCATGGCATCaaa                                                                                                            >  2:710088/1‑289 (MQ=255)
                                                                                                                                                                      ggCTGTTTGCCACTGGCATCAACGACGGTGAGATCGGTTCCAGGATTCACGGTAGCCAGCTCGCCTATGTGAGAAGTTTTGAAAGGATAAATATGTGCGCCATTAGTAACTGAAGTAGCGGCCTGACTTTCCAGCTCATGCGCCGCGTTGTCATCCATTTTTATTTCTGGCGGAAAATGGGCAATGCCTTTATGACAATCGATACAGGTTTCGCTGTCCTTTTGTGCTTTGTTATGCATTTTCTGCGCAGATTCACTTTGCGAGGCAATATCCATGGCATCAAAAGAAt                                                                                                       <  1:1497995/289‑1 (MQ=255)
                                                                                                                                                                              gCCACTGGCATCAACGACGGTGAGATCGGTTCCAGGATTCACGGTAGCCAGCGCGCCTATGTGAGAAGTTTTGAAAGGATAAATATGTGCGCCATTAGTAACTGAAGTAGCGGCCTGACTTTCCAGCTCATGCGCCGCGTTGTCATCCATTTTTATTTCTGGCGGAAAATGGGCAATGCCTTTATGACAATCGATACAGGTTTCGCTGCCCTTTTGTGCTTTGTTATGCATTTGCTGCGCAGATTCACTTTGCTAGGCAATATCCATGGCATACAATGACTGGAAACt                                                                                                >  2:954188/1‑288 (MQ=255)
                                                                                                                                                                                  cTGGCATCAACGACGGTGAGATCGGTTCCAGGATTCACGGTAGCCAGCTCGCCTATGTGAGAAGTTTTGAAAGGATAAATATGTGCGCCATTAGTAACTGAAGTAGCGGCCTGACTTTCCAGCTCATGCGCCGCGTTGTCATCCATTTTTATTTCTGGCGGAAAATGGGCAATGCCTTTATGACAATCGATACAGGTTTCGTTGTCCTTTTGTGCTTTGTTATGCATTTTCTGCGCAGATTCACTTTGCGAGGCAATATCCATGGCATCAAAAGAATGGCAACTACgg                                                                                            >  2:536358/1‑288 (MQ=255)
                                                                                                                                                                                  cTGGCATCAACGACGGTGAGATCGGTTCCAGGATTCACGGTAGCCAGCTCGCCTATGTGAGAAGTTTTGAAAGGATAAATATGTGCGCCATTAGTAACTGAAGTAGCGGCCTGACTTTCCAGCTCATGCGCCGCGTTGTCATCCATTTTTATTTCTGGCGGAAAATGGGCAATGCCTTTATGACAATCGATACAGGTTTCGCTGTCCTTTTGTGCTTTGTTTTGCATTTTCTGCGCAGATTCACTTTGCGAGGCAATATCCATGGCATCAAAAGAATGGCAACTACGGc                                                                                           <  2:1172166/289‑1 (MQ=255)
                                                                                                                                                                                       aTCAACGACGGTGAGATCGGTTCCAGGATTCACGGTAGCCAGCTCGCCTATGTGAGAAGTTTTGAAAGGATAAATATGTGCGCCATTAGTAACTGAAGTAGCGGCCTGACTTTCCAGCTCATGCGCCGCGTTGTCATCCATTTTTATTTCTGGCGGAAAATGGGCAATGCCTTTATGACAATCGATACAGGTTTCGCTGTCCTTTTGTGCTTTGTTATGCATTTTCTGCGCAGATTCACTTTGCGAGGCAATATCCATGGCATCAAAAGAATGGCAACTACGGCACGtt                                                                                      >  2:678266/1‑289 (MQ=255)
                                                                                                                                                                                       aTCAACGACGGTGAGATCGGTTCCAGGATTCACGGTAGCCAGCTCGCCTATGTGAGAAGTTTTGAAAGGATAAATATGTGCGCCATTAGTAACTGAAGTAGCGGCCTGACTTTCCAGCTCATGCGCCGCGTTGTCATCCATTTTTATTTCTGGCGGAAAATGGGCAATGCCTTTATGACAATCGATACAGGTTTCGCTGTCCTTTTGTGCTTTGTTATGCATTTTCTGCGCAGATTCACTTTGCGAGGCAATATCCATGGCATCAAAAGAATGGCAACTACGGCACGtt                                                                                      >  1:1809613/1‑289 (MQ=255)
                                                                                                                                                                                          aaCGACGGTGAGATCGGTTCCAGGATTCACGGTAGCCGGCTCGCCTATGTGAGAAGTTTTGAAAGGATAAATATGTGCGCCATTAGTAACTGAAGTAGCGGCCTGACTTTCCAGCTCATGCGCCGCGTTGTCATCCATTTTTATTTCTGGCGGAAAATGGGCAATGCCTTTATGACAATCGATACAGGTTTCGCTGTCCTTTTGTGCTTTGTTATGCATTTTCTGCGCAGATTCACTTTGCGAGGCAATATCCATGGCATCAAAAGAATGGCAACTACGGCACGTTGCa                                                                                   <  1:2220168/289‑1 (MQ=255)
                                                                                                                                                                                               cgGTGAGATCGGTTCCAGGATTCACGGTAGCCAGCTCGCCTATGTGAGAAGTTTTGAAAGGATAAATATGTGCGCCATTAGTAACTGAAGTAGCGGCCTGACTTTCCAGCTCATGCGCCGCGTTGTCATCCATTTTTATTTCTGGCGGAAAATGGGCAATGCCTTTATGACAATCGATACAGGTTTCGCTGTCCTTTTGTGCTTTGTTATGCATTTTCTGCGCAGATTCACTTTGCGAGGCAATATCCATGGCATCAAAAGAATGGCAACTACGGCACGTTGCAGAGTc                                                                              >  2:1289561/1‑289 (MQ=255)
                                                                                                                                                                                                    agaTCGGTTCCAGGATTCACGGTAGCCAGCTCGCCTATGTGAGAAGTTTTGAAAGGATAAATATGTGCGCCATTAGTAACTGAAGTAGCGGCCTGACTTTCCAGCTCATGCGCCGCGTTGTCATCCATTTTTATTTCTGGCGGAAAATGGGCAATGCCTTTATGACAATCGATACAGGTTTCGCTGTCCTTTTGTGCTTTGTTATGCATTTTCTGCGCAGATTCACTTTGCGAGGCAATATCCATGGCATCAAAAGAATGGCAACTACGGCACGTTGCAGAGTCAGTg                                                                          <  1:1431455/288‑1 (MQ=255)
                                                                                                                                                                                                            tCCAGGATTCACGGTAGCCAGCTCGCCTATGTGAGAAGTTTTGAAAGGATAAATATGTGCGCCATTAGTAACTGAAGTAGCGGCCTGACTTTCCAGCTCATGCGCCGCGTTGTCATCCATTTTTATTTCTGGCGGAAAATGGGCAATGCCTTTATGACAATCGATACAGGTTTCGCTGTCCTTTTGTGCTTTGTTATGCATTTTCTGCGCAGATTCACTTTGCGAGGCAATATCCATGGCATCAAAAGAATGGCAACTACGGCACGTTGCAGAGTCAGTGGCTTTTAAt                                                                 <  1:766783/289‑1 (MQ=255)
                                                                                                                                                                                                            tCCAGGATTCACGGTAGCCAGCTCGCCTATGTGAGAAGTTTTGAAAGGATAAATATGTGCGCCATTAGTAACTGAAGTAGCGGCCTGACTTTCCAGCTCATGCGCCGCGTTGTCATCCATTTTTATTTCTGGCGGAAAATGGGCAATGCCTTTATGACAATCGATACAGGTTTCGCTGTCCTTTTGTGCTTTGTTATGCATTTTCTGCGCAGATTCACTTTGCGAGGCAATATCCATGGCATCAAAAGAATGGCAACTACGGCACGTTGCAGAGTCAGTGGCTTTTAAt                                                                 <  1:623699/289‑1 (MQ=255)
                                                                                                                                                                                                              cAGGATTCACGGTAGCCAGCTCGCCTATGTGAGAAGTTTTGAAAGGATAAATATGTGCGCCATTAGTAACTGAAGTAGCGGCCTGACTTTCCAGCTCATGCGCCGCGTTGTCATCCATTTTTATTTCTGGCGGAAAATGGGCAATGCCTTTATGACAATCGATACAGGTTTCGCTGTCCTTTTGTGCTTTGTTATGCATTTTCTGCGCAGATTCACTTTGCGAGGCAATATCCATGGCATCAAAAGAATGGCAACTACGGCACGTTGCAGAGTCAGTGGCTTTTAATTc                                                               <  1:1867621/289‑1 (MQ=255)
                                                                                                                                                                                                                  aTTCACGGTAGCCAGCTCGCCTATGTGAGAAGTTTTGAAAGGATAAATATGTGCGCCATTAGTAACTGAAGTAGCGGCCTGACTTTCCAGCTCATGCGCCGCGTTGTCATCCATTTTTATTTCTGGCGGAAAATGGGCAATGCCTTTATGACAATCGATACAGGTTTCGCTGTCCTTTTGTGCTTTGTTATGCATTTTCTGCGCAGATTCACTTTGCGAGGCAATATCCATGGCATCAAAAGAATGGCAACTACGGCACGTTGCAGAGTCAGTGGCTTTTAATTCttt                                                            <  1:232890/288‑1 (MQ=255)
                                                                                                                                                                                                                     taCGGTAGCCAGTTCGCCTATGTAGGAAGTTTTGAAAGGATAAATATTGCCGCCATTAGTAACTGAAGTAGCGGCCTGACTTTCCAGCTCATGCGCCGCGTTGTCATCCATTTTTATTTCTGGCGGAAAATGGGCAATGCCTTTATGACAATCGATACAGGTTTCGCTGTCCTTTTGTGCTTTGTTATGCATTTTCTGCGCAGATTCACTTTGCGAGGCAATATCCATGGCATCAAAAGAATGGCAACTACGGCACGTTGCAGAGTCAGTGGCTTTTAATTCTTTCCAt                                                        <  2:1809613/288‑1 (MQ=255)
                                                                                                                                                                                                                     cACGGTAGCCAGCTCGCCTATGTGAGAAGTTTTGAAAGGATAAATATGTGCGCCATTAGTAACTGAAGTAGCGGCCTGACTTTCCAGCTCATGCGCCGCGTTGTCATCCATTTTTATTTCTGGCGGAAAATGGGCAATGCCTTTATGACAATCGATACAGGTTTCGCTg                                                                                                                                                                                >  2:1520826/1‑169 (MQ=255)
                                                                                                                                                                                                                     cACGGTAGCCAGCTCGCCTATGTGAGAAGTTTTGAAAGGATAAATATGTGCGCCATTAGTAACTGAAGTAGCGGCCTGACTTTCCAGCTCATGCGCCGCGTTGTCATCCATTTTTATTTCTGGCGGAAAATGGGCAATGCCTTTATGACAATCGATACAGGTTTCGCTg                                                                                                                                                                                <  1:1520826/169‑1 (MQ=255)
                                                                                                                                                                                                                     cACGGTAGCCAGCTCGCCTATGTGAGAAGTTTTGAAAGGATAAATATGTGCGCCATTAGTAACTGAAGTAGCGGCCTGACTTTCCAGCTCATGCGCCGCGTTGTCATCCATTTTTATTTCTGGCGGAAAATGGGCAATGCCTTTATGACAATCGATACAGGTTTCGCTGTCCTTTTGTGCTTTGTTATGCATTTTCTGCGCAGATTCACTTTGCGAGGCAATATCCATGGCATCAAAAGAATGGCAACTACGGCACGTTGCAGAGTCAGTGGCTTTTAATTCTTTCCAt                                                        >  2:1850653/1‑289 (MQ=255)
                                                                                                                                                                                                                     cACGGTAGCCAGCTCGCCTATGTGAGAAGTTTTGAAAGGATAAATATGTGCGCCATTAGTAACTGAAGTAGCGGCCTGACTTTCCAGCTCATGCGCCGCGTTGTCATCCATTTTTATTTCTGGCGGAAAATGGGCAATGCCTTTATGACAATCGATACAGGTTTCGCTGTCCTTTTGTGCTTTGTTATGCATTTTCTGCGCAGATTCACTTTGCGAGGCAATATCCATGGCATCAAAAGAATGGCAACTACGGCACGTTGCAGAGTCAGTGGCTTTTAATTCTTTCCAt                                                        >  1:2156974/1‑289 (MQ=255)
                                                                                                                                                                                                                     cACGGTAGCCAGCTCGCCTATGTGAGAAGTTTTGAAAGGATAAATATGTGCGCCATTAGTAACTGAAGTAGCGGCCTGACTTTCCAGCTCATGCGCCGCGTTGTCATCCATTTTTATTTCTGGCGGAAAATGGGCAATGCCTTTATGACAATCGATACAGGTTTCGCTGTCCTTTTGTGCTTTGTTATGCATTTTCTGCGCAGATTCACTTTGCGAGGCAATATCCATGGCATCAAAAGAATGGCAACTACGGCACGTTGCAGAGTCAGTGGCTTTTAATTCTTGCCAt                                                        >  1:1648782/1‑289 (MQ=255)
                                                                                                                                                                                                                                         tgtgAGAAGTTTTGAAAGGATAAATATGTGCGCCATTAGTAACTGAAGTAGCGGCCTGACTTTCCAGCTCATGCGCCGCGTTGTCATCCATTTTTATTTCTGGCGGAAAATGGGCAATGCCTTTATGACAATCGATACAGGTTTCGCTGTCCTTTTGTGCTTTGTTATGCATTTTCTGCGCAGATTCACTTTGCGAGGCAATATCCATGGCATCAAAAGAATGGCAACTACGGCACGTTGCAGAGTCAGTGGCTTTTAATTCTTTCCATACTGTTTCGGCCATTTCCTg                                    >  2:455924/1‑289 (MQ=255)
                                                                                                                                                                                                                                                        aaGGATAAAGTCGTGCTCCATTAGTAACTGCAGTAGAGGCCTGACTTTCCAGCTCATGCGCCGCGTTGTCATCCATTTTTATTTCTGGCGGAAAATGGGCAATGCCTTTATGACAATCGATACAGGTTTCGCTGTCCTTGTGTGCTTTGTTATGCATTTTCTGCGCAGATTCACTTTGCGAGGCAATATCCATGGCATCAAAAGAATGGCAACTACGGCACGTTGCAGAGTCAGTGGCTTTTAATTCTTTCCATACTGTTTCGGCCATTTCCTGGCGATGAGCTTCGaa                     <  2:1365314/289‑1 (MQ=255)
                                                                                                                                                                                                                                                            aTAAATATGTGCGCCATTAGTAACTGAAGTAGCGGCCTGACTTTCCAGCTCATGCGCCGCGTTGTCATCCATTTTTATTTCTGGCGGAAAATGGGCAATGCCTTTATGACAATCGATACAGGTTTCGCTGTCCTTTTGTGCTTTGTTATGCATTTTCTGCGCAGATTCACTTTGCGAGGCAATATCCATGGCATCAAAAGAATGGCAACTACGGCACGTTGAAGAGTCAGTGGCTTTTAATTCTTTCCATACTGTTTTGGCCATTTCCTGGCGATGAGCTTCGAACTTa                 >  1:1378030/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                  ttgtgCGCCGTTAGTAACTGATGTAGCGGCCTGACTGTCCAGCTCATGCGCCGCGTTGTCATCCATTTTTATTTCTGGCGGAAAATGGGCAATGCCTTTATGACAATCGATACAGGTTTCGCTGTCCTTTTGTGCTTTGTTATGCATTTTCTGCGCAGATTCACTTTGCGAGGCAATATCCATGGCATCAAAAGAATGGCAACTACGGCACGTTGCAGAGTCAGTGGCTTTTAATTCTTTCCATACTGTTTCGGCCATTTCCTGGCGATGAGCTTCGAACTTATCGTCa           <  2:1866244/288‑1 (MQ=255)
                                                                                                                                                                                                                                                                    gtgCGCCATTAGTAACTGAAGTAGCGGCCTGACTTTCCAGCTCATGCGCCGCGTTGTCATCCATTTTTATTTCTGGCGGAAAATGGGCAATGCCTTTATGACAATCGATACAGGTTTCGCTGTCCTTTTGTGCTTTGTTATGCATTTTCTGCGCAGATTCACTTTGCGAGGCAATATCCATGGCATCAAAAGAATGGCAACTACGGCACGTTGCAGAGTCAGTGGCTTTTAATTCTTTCCATACTGTTTCGGCCATTTCCTGGCGATGAGCTTCGAACTTATCGTCACt         <  1:455924/289‑1 (MQ=255)
                                                                                                                                                                                                                                                                      gcgcCATTAGTAACTGAAGTAGCGGCCTGACTTTCCAGCTCATGCGCCGCGTTGTCATCCATTTTTATTTCTGGCGGAAAATGGGCAATGCCTTTATGACAATCGATACAGGTTTCGCTGTCCTTTTGTGCTTTGTTATGCATTTTCTGCGCAGATTCACt                                                                                                                                       >  1:652689/1‑161 (MQ=255)
                                                                                                                                                                                                                                                                      gcgcCATTAGTAACTGAAGTAGCGGCCTGACTTTCCAGCTCATGCGCCGCGTTGTCATCCATTTTTATTTCTGGCGGAAAATGGGCAATGCCTTTATGACAATCGATACAGGTTTCGCTGTCCTTTTGTGCTTTGTTATGCATTTTCTGCGCAGATTCACTTTGCGAGGCAATATCCATGGCATCAAAAGAATGGCAACTACGGCACGTTGCAGAGTCAGTGGCTTTTAAt                                                                 >  2:494354/1‑231 (MQ=255)
                                                                                                                                                                                                                                                                      gcgcCATTAGTAACTGAAGTAGCGGCCTGACTTTCCAGCTCATGCGCCGCGTTGTCATCCATTTTTATTTCTGGCGGAAAATGGGCAATGCCTTTATGACAATCGATACAGGTTTCGCTGTCCTTTTGTGCTTTGTTATGCATTTTCTGCGCAGATTCACTTTGCGAGGCAATATCCATGGCATCAAAAGAATGGCAACTACGGCACGTTGCAGAGTCAGTGGCTTTTAATTCTTTCCATACTGTTTCGGCCATTTCCTGGCGATGAGCTTCGAACTTATCGTc            >  1:278931/1‑284 (MQ=255)
                                                                                                                                                                                                                                                                         ccATTAGTAACTGAAGTAGCGGCCTGACTTTCCAGCTCATGCGCCGCGTTGTCATCCATTTTTATTTCTGGCGGAAAATGGGCAATGCCTTTATGACAATCGATACAGGTTTCGCTGTCCTTTTGTGCTTTGTTATGCATTTTCTGCGCAGATTCACTTTGCGAGGCAATATCCATGGCATCAAAAGAATGGCAACTACGGCACGTTGCAGAGTCAGTGGCTTTTAATTCTTTCCATACTGTTTCGGCCATTTCCTGGCGATGAGCTTCGAACTTATCGTCACTGTCTa    >  1:1133204/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                           aTTAGTAACTGAAGTAGCGGCCTGACTTTCCAGCTCATGCGCCGCGTTGTCATCCATTTTTATTTCTGGCGGAAAATGGGCAATGCCTTTATGACAATCGATACAGGTTTCGCTGTCCTTTTGTGCTTTGTTATGCATTTTCTGCGCAGATTCACTTTGCGAGGCAATATCCATGGCATCAAAAGAATGGCAACTACGGCACGTTGCAGAGTCAGTGGCTTTTAATTCTTTCCATACTGTTTCGGCCATTTCCTGGCGATGAGCTTCGAACTTATCGTCACTGTCTAtt  >  1:17952/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                                    |||                                                                                                                                                                                                                                                                                     
CGCCTGACGCCATTGATTGCCGTATTCGTCAGCCTGCCATTCCCCGTTTACAGTGAGCGCCTTGATACCTTCTTCACTTAATGTGGCTAGCGCCAGCCGTTGACCTGCCGCCAGGTAGAGCGTGTTTTCACTGCCCTGCATTTGATAACCCTGCAACAGAACGATCGGCTGTTTGCCACTGGCATCAACGACGGTGAGATCGGTTCCAGGATTCACGGTAGCCAGCTCGCCTATGTGAGAAGTTTTGAAAGGATAAATATGTGCGCCATTAGTAACACTAGTAGCGGCCTGACTTTCCAGCTCATGCGCCGCGTTGTCATCCATTTTTATTTCTGGCGGAAAATGGGCAATGCCTTTATGACAATCGATACAGGTTTCGCTGTCCTTTTGTGCTTTGTTATGCATTTTCTGCGCAGATTCACTTTGGCTGGCAATATCCATGGCATCAAAAGAATGGCAACTACGGCACGTTGCAGAGTCAGTGGCTTTTAATTCTTTCCATACTGTTTCGGCCATTTCCTGGCGATGAGCTTCGAACTTATCGTCACTGTCTATT  >  CP042583/1638029‑1638584

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A