Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A0 F0 I1 R1 4926 296.4 4517418 96.8% 4372860 264.2

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA CP042583 1,664,306 3 bp→CGA intergenic (–/–) – / – –/–

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0425831,664,3060GC99.6% 642.6 / NA 273intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base G (1/0);  new base C (120/152);  total (121/152)
Fisher's exact test for biased strand distribution p-value = 4.43e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*CP0425831,664,3070CG98.9% 638.0 / NA 273intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base C (3/0);  new base G (118/152);  total (121/152)
Fisher's exact test for biased strand distribution p-value = 8.59e-02
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*CP0425831,664,3080TA99.6% 650.0 / ‑4.6 273intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base T (0/0);  major base A (120/152);  minor base . (1/0);  total (121/152)
Fisher's exact test for biased strand distribution p-value = 4.43e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.97e-01

Only 100 of 273 total aligned reads displayed.

CTGGCAGAATCACACAAAACTCCTCACCACCGACCCGCCCGGCAACGTCCTGCGCACGCAAGGAACTGCTAATTAATCCGGCAGCATGAGAAAGAACACGGTCGCCCGCCTGATGACCAAAGCGGTCATTAATCGCTTTAAAATGGTCAAGATCGACCTGAATGACAGAAAAAGGATGTTGGTGCGTCTGACACAATTTAGCGAGCGGACGGGCTTTTTCGAACAGTGCGCCACGGTTATATAAACGCGTTAAGGTGTCGTGCCACGCCTGCCACTGCAAGCTGCTTTGCAGAACATACATGTTGCTAACCATCCGGCGAATCACATACCAGGAGATGAGTAACATGGTGGTAAAGAGCGCCCACAGCAGGGTTAATGCAATGCTGATACTGCCGAAATCGCCGCGCACGCCTTCGCTTAACGTATGGACACGCACCAGCACACCGTCGAAATGGTCCAGACGTTCCCAGCTAACATAGCGACTGTCCATACGAATGCCGCCCCGCGTGTCATGTTCCATTGCCTGCGCCAGCAAGGCCAGTTCACGAGGATCAAAAATA  >  CP042583/1664026‑1664585
                                                                                                                                                                                                                                                                                        |||                                                                                                                                                                                                                                                                                     
cTGGAAGAATAACACAAACACCCTCACCCCCGACCCGCCCGGCAACGTCCTGCGAACGCAAGGAACTGCGAATTAAACCGGCAGCATGAGAAAGAACACGGTCGCCCGCCTGATGACCAAAGCGGTCATTAATCGCTTTAAAATGGTCAAGATCGACCTGAATGACAGAAAAAGGATGTTGGTGCGTCTGACACAATTTAGCGAGCGGACGGGCTTTTTCGAACAGTGCGCCACGGTTATATAAACGCGTTAAGGTGTCGTGCCACGCCTGCCACTGCAACGAGCTTTg                                                                                                                                                                                                                                                                                 <  2:127962/289‑1 (MQ=255)
  ggCAGAATCACACAAAACTCCTCACCACCGACCCGCCCGGCAACGTCCTGCGCACGCAAGGAACTGCTAATTAATCCGGCAGCATGAGAAAGAACACGGTCGCCCGCCTGATGACCAAAGCGGTCATTAATCGCTTTAAAATGGTCAAGATCGACCTGAATGACAGAAAAAGGATGTTGGTGCGTCTGACACAATTTAGCGAGCGGACGGGCTTTTTCGAACAGTGCGCCACGGTTATATAAACGCGTTAAGGTGTCGTGCCACGCCTGCCACTGCAACGAGCTTTGCa                                                                                                                                                                                                                                                                               <  1:582661/289‑1 (MQ=255)
          cacacaAACCCCCGCACCCCCGCCCCGGCCGGAAACGTCCTGCGCACGCAAGGAACTGCTAATTAATCCGGCAGCATGAGAAAGAACACGGTCGCCCGCCTGATGACCAAAGCGGTCATTAATCGCTTTAAAATGGTCAAGATCGACCTGAATGACAGAAAAAGGATGTTGGTGCGTCTGACACAATTTAGCGAGCGGACGGGCTTTTTCGAACAGTGCGCCACGGTTATATAAACGCGTTAAGGTGTCGTGCCACGCCTGCCACTGCAACGAGCTTTGCAGAacatac                                                                                                                                                                                                                                                                       <  2:1338638/289‑1 (MQ=255)
          cacacaAAACTCCTCACCACCGACCCGCCCGGCAACGTCCTGCGCACGCAAGGAACTGCTAATTAATCCGGCAGCATGAGAAAGAACACGGTCGCCCGCCTGATGACCAAAGCGGTCATTAATCGCTTTAAAATGGTCAAGATCGACCTGAATGACAGAAAAAGGATGTTGGTGCGTCTGACACAATTTAGCGAGCGGACGGGCTTTTTCGAACAGTGCGCCACGGTTATATAAACGCGTTAAGGTGTCGTGCCACGCCTGCCACTGCAACGAGCTTTGCAGAacatac                                                                                                                                                                                                                                                                       >  1:1819575/1‑289 (MQ=255)
           cccaaaaaCCCCTCACCACCGTCCCGCCCGGCAACGTCCTGCGCACGCAAGGAACTGCTAATTAATCCGGCAGCATGAGAAAGAACACGGTCGCCCGCCTGATGACCAAAGCGGTCATTAATCGCTTTAAAATGGTCAAGATCGACCTGAATGACAGAAAAAGGATGTGGGTGCGTCTGACACAATTTAGCGAGCGGACGGGCTTTTTCGAACAGTGCGCCACGGTTATATAAACGCGTTAAGGTGTCGTGCCACGCCTGCCACTGCAACGAGCTTTGCAGAacataca                                                                                                                                                                                                                                                                      <  2:1819575/285‑1 (MQ=255)
           acaaaAACCTCCTCCCCACCGACCCGCCCGGCAACGTCCTGCGCACGCAAGGAACTGCTAATTAATCCGGCAGCATGAGAAAGAACACGGTCGCCCGCCTGATGACCAAAGCGGTCATTAATCGCTTTAAAATGGTCAAGATCGACCTGAATGACAGAAAAAGGATGTTGGTGCGTCTGACACAATTTAGCGAGCGGACGGGCTTTTTCGAACAGTGCGCCACGGTTATATAAACGCGTTAAGGTGTCGTGCCACGCCTGCCACTGCAACGAGCTTTGCAGAacataca                                                                                                                                                                                                                                                                      <  2:2234968/289‑1 (MQ=255)
                       ccaccccCGACCCGCCCGGCAACGTCCGGCGCACGCAAGGAACTGCTAATTAATCCGGAAGCATGAGAAAGAACACGGTCGCCCGCCTGATGACCAAAGCGGTCATTAATCGCTTTAAAATGGTCAAGATCGACCTGAATGACAGAAAAAGGATGTTGGTGCGTCTGACACAATTTAGCGAGCGGACGGGCTTTTTCGAACAGTGCGCCACGGTTATATAAACGCGTTAAGGTGTCGTGCCACGCCTGCCACTGCAACGAGCTTTGCAGAACATACATGTTGCTAACCa                                                                                                                                                                                                                                                          <  2:1744736/288‑1 (MQ=255)
                           caccGACCCGCCCGGCAACGTCCTGCGCACGCAAGGAACTGCTAATTAATCCGGCAGCATGAGAAAGAACACGGTCGCCCGCCTGATGACCAAAGCGGTCATTAATCGCTTTAAAATGGTCAAGATCGACCTGAATGACAGAAAAAGGATGTTGGTGCGTCTGACACAATTTAGCGAGCGGACGGGCTTTTTCGAACAGTGCGCCACGGTTATATAAACGCGTTAAGGTGTCGTGCCACGCCTGCCACTGCAACGAGCTTTGCAGAACATACATGTTGCTAACCATCCg                                                                                                                                                                                                                                                      <  1:2056625/289‑1 (MQ=255)
                           caccGACCCGCCCGGCAACGTCCTGCGCACGCAAGGAACTGCTAATTAATCCGGCAGCATGAGAAAGAACACGGTCGCCCGCCTGATGACCAAAGCGGTCATTAATCGCTTTAAAATGGTCAAGATCGACCTGAATGACAGAAAAAGGATGTTGGTGCGTCTGACACAATTTAGCGAGCGGACGGGCTTTTTCGAACAGTGCGCCACGGTTATATAAACGCGTTAAGGTGTCGTGCCACGCCTGCCACTGCAACGAGCTTTGCAGAACATACATGTTGCTAACCATCCg                                                                                                                                                                                                                                                      >  2:415806/1‑289 (MQ=255)
                           caccGACCCGCCCGGCAACGTCCTGCGCACGCAAGGAACTGCTAATTAATCCGGCAGCATGAGAAAGAACACGGTCGCCCGCCTGATGACCAAAGCGGTCATTAATCGCTTTAAAATGGTCAAGATCGACCTGAATGACAGAAAAAGGATGTTGGTGCGTCTGACACAATTCAGCGAGCGGACGGGCTTTTTCGAACAGTGCGCCACGGTTATATAAACGCGTTAAGGTGTCGTGCCACGCCTGCCACTGCAACGAGCTTTGCa                                                                                                                                                                                                                                                                               >  2:266077/1‑264 (MQ=255)
                             ccGGCCCGCCCGGCAACGTCCTGCGCACGCAAGGAACTGCTAATTAATCCGGCAGCATGAGAAAGAACACGGTCGCCCGCCTGATGACCAAAGCGGTCATTAATCGCTTTAAAATGGTCAAGATCGACCTGAATGACAGAAAAAGGATGTTGGTGCGTCTGACACAATTTAGCGAGCGGACGGGCTTTTTCGAACAGTGCGCCACGGTTATATAAACGCGTTAAGGTGTCGTGCCACGCCTGCCACTGCAACGAGCTTTGCAGAACATACATGTTGCTAACCATCCGGc                                                                                                                                                                                                                                                    <  1:23515/289‑1 (MQ=255)
                             ccGACCCGCCCGGCAACGTCCTGCGCACGCAAGGAACTGCTAATTAATCCGGCAGCATGAGAAAGAACACGGTCGCCCGCCTGATGACCAAAGCGGTCATTAATCGCTTTAAAATGGTCAAGATCGACCTGAATGACAGAAAAAGGATGTTGGTGCGTCTGACACAATTTAGCGAGCGGACGGGCTTTTTCGAACAGTGCGCCACGGTTATATAAACGCGTTAAGGTGTCGTGCCACGCCTGCCACTGCAACGAGCTTTGCAGAACATACATGTTGCTAACCATCCGGc                                                                                                                                                                                                                                                    >  1:1630014/1‑289 (MQ=255)
                              cgtgccggccggCAACGTGCTGCGCACGCAAGGAAATGGTAATTAATGCGGCAGCAGGAGAAAGAACACGGTCGGCCGCCTGATGACCAAAGCGGTCATTAATAGCTTTAAAAGAGTCAAGATCGACCTGAATGACAGAAAAAGGATGTTGGTGAGTCTGACACAATTTAGCGCGCGGACGGGCTTTTTCGAACAGTGCGCCACGGTTATATAAACGCGTTAAGGTGTCGTGCCACGCCTGCCACTGCAACGAGCTTTGCAGAACATACATGTTGCTAACCATCCGGCg                                                                                                                                                                                                                                                   <  2:349230/285‑1 (MQ=255)
                              cGACCCGCCCGGCAACGTCCTGCGCACGCAAGGAACTGCTAATTAATCCGGCAGCATGAGAAAGAACACGGTCGCCCGCCTGATGACCAAAGCGGTCATTAATCGCTTTAAAATGGTCAAGATCGACCTGAATGACAGAAAAAGGATGTTGGTGCGTCTGACACAATTTAGCGAGCGGACGGGCTTTTTCGAACAGTGCGCCACGGTTATATAAACGCGTTAAGGTGTCGTGCCACGCCTGCCACTGCAACGAGCTTTGCAGAACATACATGTTGCTAACCATCCGGCg                                                                                                                                                                                                                                                   >  2:762821/1‑289 (MQ=255)
                                aCCCGCCCGGCAACGTCCTGCGCACGCAAGGAACTGCTAATTAATCCGGCAGCATGAGAAAGAACACGGTCGCCCGCCTGATGACCAAAGCGGTCATTAATCGCTTTAAAATGGTCAAGATCGACCTGAATGACAGAAAAAGGATGTTGGTGCGTCTGACACAATTTAGCGAGCGGACGGGCTTTTTCGAACAGTGCGCCACGGTTATATAAACGCGTTAAGGTGTCGTGCCACGCCTGCCACTGCAACGAGCTTTGCAGAACATACATGTTGCTAACCATCCGGCGaa                                                                                                                                                                                                                                                 >  1:991654/1‑289 (MQ=255)
                                    gcccgGCAACGTCCTGCGCACGCAAGGAACTGCTAATTAATCCGGCAGCCTGAGAAAGACCACCGTCGCCCGCCTGATGACCAAAGCCGTCATTAATCGCTTTAAAATGGTCAAAATCGACCTGAATGACAGAAAAAGGATGTTGGTGCGTCTGACACAATTTAGCGAGCGGACGGGCTTTTTCGAACAGTGCGCCACGGTTATATAAACGCGTTAAGGTGTCGTGCCACGCCTGCCACTGCAACGAGCTTTGCAGAACATACATGTTGCTAACCATCCGGCGAATcac                                                                                                                                                                                                                                             <  1:1013017/289‑1 (MQ=255)
                                    gcccgGCAACGTCCTGCGCACGCAAGGAACTGCTAATTAATCCGGCAGCATGAGAAAGAACACGGTCGCCCGCCTGATGACCAAAGCGGTCATTAATCGCTTTAAAATGGTCAAGATCGACCTGAATGACAGAAAAAGGATGTTGGTGCGTCTGACACAATTTAGCGAGCGGACGGGCTTTTTCGAACAGTGCGCCACGGTTATATAAACGCGTTAAGGTGTCGTGCCACGCCTGCCACTGCAACGAGCTTTGCAGAACATACATGTTGCTAACCATCCGGCGAATcac                                                                                                                                                                                                                                             <  1:641296/289‑1 (MQ=255)
                                        ggCAACGTCCTGCGCACGCAAGGAACTGCTAATTAATCCGGCAGCATGAGAAAGAACACGGTCGCCCGCCTGATGACCAAAGCGGTCATTAATCGCTTTAAAATGGTCAAGATCGACCTGAATGACAGAAAAAGGATGTTGGTGCGTCTGACACAATTTAGCGAGCGGACGGGCTTTTTCGAACAGTGCGCCACGGTTATATAAACGCGTTAAGGTGTCGTGCCACGCCTGCCACTGCAACGAGCTTTGCAGCACATACATGCGGCTAACCATCCGGCGAATcacaga                                                                                                                                                                                                                                          >  2:1009731/1‑286 (MQ=255)
                                              gTCCTGCGCACGCAAGGAACTGCTAATTAATCCGGCAGCATGAGAAAGAACACGGTCGCCCGCCTGATGACCAAAGCGGTCATTAATCGCTTTAAAATGGTCAAGATCGACCTGAATGACAGAAAAAGGATGTTGGTGCGTCTGACACAATTTAGCGAGCGGACGGGCTTTTTCGAACAGTGCGCCACGGTTATATAAACGCGTTAAGGTGTCGTGCCACGCCTGCCACTGCAACGAGCTTTGCAGAACATACATGTTGCTAACCATCCGGCGAATCACATACCAGgag                                                                                                                                                                                                                                   <  1:312479/289‑1 (MQ=255)
                                                ccTGCGCACGCAAGGAACTGCTAATTAATCCGGCAGCATGAGAAAGAACACGGTCGCCCGCCTGATGACCAAAGCGGTCATTAATCGCTTTAAAATGGTCAAGATCGACCTGAATGACAGAAAAAGGATGTTGGTGCGTCTGACACAATTTAGCGAGCGGACGGGCTTTTTCGAACAGTGCGCCACGGTTATATAAACGCGTTAAGGTGTCGTGCCACGCCTGCCACTGCAACGAGCTTTGCAGAACATACATGTTGCTAACCATCCGGCGAATCACATACCAGGAGAt                                                                                                                                                                                                                                 <  1:148436/289‑1 (MQ=255)
                                                actcggcacgcaAGGAAAGTCAAATTGAACCGGCAGCAGGAGAAAGAACACGGGCGCCCGCCTGTTGACCAAAGCAGTAATTAATCGCTTTAAAATGGTAAAGATCGACCTGAAGGACAGAAAAAGGATGTTGGTGCGTCTGACACAATTTGGCGAGCGGACGGGCTTTTTCGAACAGTGCGCCACGGTTATATAAACGCGTTAAGGTGTCGTGCCACGCCTGCCACTGCAACGAGCTTTGCAGAACATACATGTTGCTAACCATCCGGCGAATCACATACCAGGAGAt                                                                                                                                                                                                                                 <  2:25370/284‑1 (MQ=255)
                                                   gcgcACGCAAGGAACTGCTAATTAATCCGGCAGCATGAGAAAGAACACGGTCGCCCGCCTGATGACCAAAGCGGTCATTAATCGCTTTAAAATGGTCAAGATCGACCTGAATGACAGAAAAAGGATGTTGGTGCGTCTGACACAATTTAGCGAGCGGACGGGCTTTTTCGAACAGTGCGCCACGGTTATATAAACGCGTTAAGGTGTCGTGCCACGCCTGCCACTGCAACGAGCTTTGCAGAACATACATGTTGCTAACCATCCGGCGAATCACATACCAGGAGATGAg                                                                                                                                                                                                                              <  1:929955/289‑1 (MQ=255)
                                                    cgcacgcaAGGAACTGCTAATTAATCCGGCAGCATGAGAAAGAACACGGTCGCCCGCCTGATGACCAAAGCGGTCATTAATCGCTTTAAAATGGTCAAGATCGACCTGAATGACAGAAAAAGGATGTTGGTGCGTCTGACACAATTTAGCGAGCGGACGGGCTTTTTCGAACAGTGCGCCACGGTTATATAAACGCGTTAAGGTGTCGTGCCACGCCTGCCACTGCAACGAGCTTTGCAGAACATACATGTTGCTAACCATCCGGCGAATCACATACCAGgag                                                                                                                                                                                                                                   <  1:211060/283‑1 (MQ=255)
                                                    cgcacgcaAGGAACTGCTAATTAATCCGGCAGCATGAGAAAGAACACGGTCGCCCGCCTGATGACCAAAGCGGTCATTAATCGCTTTAAAATGGTCAAGATCGACCTGAATGACAGAAAAAGGATGTTGGTGCGTCTGACACAATTTAGCGAGCGGACGGGCTTTTTCGAACAGTGCGCCACGGTTATATAAACGCGTTAAGGTGTCGTGCCACGCCTGCCACTGCAACGAGCTTTGCAGAACATACATGTTGCTAACCATCCGGCGAATCACATACCAGgag                                                                                                                                                                                                                                   >  2:211060/1‑283 (MQ=255)
                                                       acgcaAGGAACTGCTAATTAATCCGGCAGCATGAGAAAGAACACGGTCGCCCGCCTGATGACCAAAGCGGTCATTAATCGCTTTAAAATGGTCAAGATCGACCTGAATGACAGAAAAAGGATGTTGGTGCGTCTGACACAATTTAGCGAGCGGACGGGCTTTTTCGAACAGTGCGCCACGGTTATATAAACGCGTTAAGGTGTCGTGCCACGCCTGCCACTGCAACGAGCTTTGCAGAACATACATGTTGCTAACCATCCGGCGAATCACATACCAGGAGATGAGTaa                                                                                                                                                                                                                           <  1:1168918/288‑1 (MQ=255)
                                                        cgcaAGGAACTGCTTATTAATCCCGCAGCATGATAAAGAACACGGTCTCCCGCCTGATGACCAAAGCGGTCATTAATCGCTTTAAAATGGTCAAGATCGACCTGAATGACAGAAAAAGGATGTTGGTGCGTCTGACACAATTTAGCGAGCGGACGGGCTTTTTCGAACAGTGCGCCACGGTTATATAAACGCGTTAAGGTGTCGTGCCACGCCTGCCACTGCAACGAGCTTTGCAGAACATACATGTTGCTAACCATCCGGCGAATCACATACCAGGAGATGAGTAACa                                                                                                                                                                                                                         <  2:599968/289‑1 (MQ=255)
                                                        cgcaAGGAACTGCTAATTAATCCGGCAGCATGAGAAAGAACACGGTCGCCCGCCTGATGACCAAAGCGGTCATTAATCGCTTTAAAATGGTCAAGATCGACCTGAATGACAGAAAAAGGATGTTGGTGCGTCTGACACAATTTAGCGAGCGGACGGGCTTTTTCGAACAGTGCGCCACGGTTATATAAACGCGTTAAGGTGTCGTGCCACGCCTGCCACTGCAACGAGCTTTGCAGAACATACATGTTGCTAACCATCCGGCGAATCACATACCAGGAGATGAGTAACa                                                                                                                                                                                                                         <  2:1100213/289‑1 (MQ=255)
                                                         gcaAGGAACTGCTAATTAATCCGGCAGCATGAGAAAGAACACGGTCGCCCGCCTGATGACCAAAGCGGTCATTAATCGCTTTAAAATGGTCAAGATCGACCTGAATGACAGAAAAAGGATGTTGGTGCGTCTGACACAATTTAGCGAGCGGACGGGCTTTTTCGAACAGTGCGCCACGGTTATATAAACGCGTTAAGGTGTCGTGCCACGCCTGCCACTGCAACGAGCTTTGCAGAACATACATGTTGCTAACCATCCGGCGAATCACATACCAGGAGATGAGTAACAt                                                                                                                                                                                                                        >  1:413542/1‑289 (MQ=255)
                                                              gAACTGCTAATTAATCCGGCAGCATGAGAAAGAACACGGTCGCCCGCCTGATGACCAAAGCGGTCATTAATCGCTTTAAAATGGTCAAGATCGACCTGAATGACAGAAAAAGGATGTTGGTGCGTCTGACACAATTTAGCGAGCGGACGGGCTTTTTCGAACAGTGCGCCACGGTTATATAAACGCGTTAAGGTGTCGTGCCACGCCTGCCACTGCAACGAGCTTTGCAGAACATACATGTTGCTAACCATCCGGCGAATCACATACCAGGAGATGAGTAACAtggtgg                                                                                                                                                                                                                   >  1:274592/1‑289 (MQ=255)
                                                                    gtaattattCCTGCAGCATGATAAAGACCACGGTCGCCCGCCTGATTACCAAAGTGGTCATTAATCGCTTTAAAATGGTCAAGATCGACCTGAATGACAGAAAAAGGTCTGTGGTGCGTCTGACACAATTTAGCGGGCGGACGGGGTTTGTCGAACAGTGCGCCACGGTTATATAAACGCGGTAAGGTTTTGTGCCACGCCTGCCACTGCAACGAGCTTTGCAGAACATACATGTTGCTAACCATCCGGCGAATCACATACCAGGAGATGAGTAACATGGTGGTAAaga                                                                                                                                                                                                             <  2:63228/288‑1 (MQ=255)
                                                                     taattaatCCGGCAGCATGAGAAAGAACACGGTCGCCCGCCTGATGACCAAAGCGGTCATTAATCGCTTTAAAATGGTCAAGATCGACCTGAATGACAGAAAAAGGATGTTGGTGCGTCTGACACAATTTAGCGAGCGGACGGGCTTTTTCGAACAGTGCGCCACGGTTATATAAACGCGTTAAGGTGTCGTGCCACGCCTGCCACTGCAACGAGCTTTGCAGAACATACATGTTGCTAACCATCCGGCGAATCACATACCAGGAGATGAGTAACATGGTGGTAAaga                                                                                                                                                                                                             <  1:382255/288‑1 (MQ=255)
                                                                     taattaatCCGGCAGCATGAGAAAGAACACGGTCGCCCGCCTGATGACCAAAGCGGTCATTAATCGCTTTAAAATGGTCAAGATCGACCTGAATGACAGAAAAAGGATGTTGGTGCGTCTGACACAATTTAGCGAGCGGACGGGCTTTTTCGAACAGTGCGCCACGGTTATATAAACGCGTTAAGGTGTCGTGCCACGCCTGCCACTGCAACGAGCTTTGCAGAACATACATGTTGCTAACCATCCGGCGAATCAACTACCAGGAGACAATGAACATGGGGGTAAagag                                                                                                                                                                                                            >  2:169428/1‑289 (MQ=255)
                                                                         taatCCGGCAGCATGAGAAAGAACACGGTCGCCCGCCTGATGACCAAAGCGGTCATTAATCGCTTTAAAATGGTCAAGATCGACCTGAATGACAGAAAAAGGATGTTGGTGCGTCTGACACAATTTAGCGAGCGGACGGGCTTTTTCGAACAGTGCGCCACGGTTATATAAACGCGTTAAGGTGTCGTGCCACGCCTGCCACTGCAACGAGCTTTGCAGAacataca                                                                                                                                                                                                                                                                      >  1:1122008/1‑227 (MQ=255)
                                                                         taatCCGGCAGCATGAGAAAGAACACGGTCGCCCGCCTGATGACCAAAGCGGTCATTAATCGCTTTAAAATGGTCAAGATCGACCTGAATGACAGAAAAAGGATGTTGGTGCGTCTGACACAATTTAGCGAGCGGACGGGCTTTTTCGAACAGTGCGCCACGGTTATATAAACGCGTTAAGGTGTCGTGCCACGCCTGCCACTGCAACGAGCTTTGCAGAACATACATGTTGCTAACCATCCGGCGAATCACATACCAGGAGATGAGTAACATGGTGGTAAAGAgcgc                                                                                                                                                                                                         >  1:1787233/1‑288 (MQ=255)
                                                                          aatCCGGCAGCATGAGAAAGAACACGGTCGCCCGCCTGATGACCAAAGCGGTCATTAATCGCTTTAAAATGGTCAAGATCGACCTGAATGACAGAAAAAGGATGTTGGTGCGTCTGACACAATTTAGCGAGCGGACGGGCTTTTTCGAACAGTGCGCCACGGTTATATAAACGCGTTAAGGTGTCGTGCCACGCCTGCCACTGCAACGAGCTTTGCAGAACATACATGTTGCTAACCATCCGGCGAATCACATACCAGGAGATGAGTAACATGGTGGTAAAGAGCGccc                                                                                                                                                                                                       <  1:1361156/289‑1 (MQ=255)
                                                                              cGGCAGCATGAGAAAGAACACGGTCGCCCGCCTGATGACCAAAGCGGTCATTAATCGCTTTAAAATGGTCAAGATCGACCTGAATGACAGAAAAAGGATGTTGGTGCGTCTGACACAATTTAGCGAGCGGACGGGCTTTTTCGAACAGTGCGCCACGGTTATATAAACGCGTTAAGGTGTCGTGCCACGCCTGCCACTGCAACGAGCTTTGCAGAACATACATGTTGCTAACCATCCGGCGAATCACATACCAGGAGATGAGTAACATGGTGGTAAAGAGCGCCCAcag                                                                                                                                                                                                   <  1:535816/289‑1 (MQ=255)
                                                                              cGGCAGCATGAGAAAGAACACGGTCGCCCGCCTGATGACCAAAGCGGTCATTAATCGCTTTAAAATGGTCAAGATCGACCTGAATGACAGAAAAAGGATGTTGGTGCGTCTGACACAATTTAGCGAGCGGACGGGCTTTTTCGAACAGTGCGCCACGGTTATATAAACGCGTTAAGGTGTCGTGCCACGCCTGCCACTGCAACGAGCTTTGCAGAACATACATGTTGCTAACCATCCGGCGAATCACATACCAGGAGATGAGTAACATGGTGGTAAAGAGCGCCCAcag                                                                                                                                                                                                   <  1:1100823/289‑1 (MQ=255)
                                                                               ggCAGCATGAGAAAGAACACGGTCGCCCGCCTGATGACCAAAGCGGTCATTAATCGCTTTAAAATGGTCAAGATCGACCTGAATGACAGAAAAAGGATGTTGGTGCGTCTGACACAATTTAGCGAGCGGACGGGCTTTTTCGAACAGTGCGCCACGGTTATATAAACGCGTTAAGGTGTCGTGCCACGCCTGCCACTGCAACGAGCTTTGCAGAACATACATGTTGCTAACCATCCGGCGAATCACATACCAGGAGATGAGTGACATGGTGGTAAAGAGCGCCCAcagc                                                                                                                                                                                                  <  1:143446/289‑1 (MQ=255)
                                                                               ggCAGCATGAGAAAGAACACGGTCGCCCGCCTGATGACCAAAGCGGTCATTAATCGCTTTAAAATGGTCAAGATCGACCTGAATGACAGAAAAAGGATGTTGGTGCGTCTGACACAATTTAGCGAGCGGACGGGCTTTTTCGAACAGTGCGCCACGGTTATATAAACGCGTTAAGGTGTCGTGCCACGCCTGCCACTGCAACGAGCTTTGCAGAACATACATGTTGCTAACCATCCGGCGAATCACATACCAGGAGATGAGTAACATGGTGGTAAAGAGCGCCCAcagc                                                                                                                                                                                                  <  1:1506833/289‑1 (MQ=255)
                                                                               ggCAGCATGAGAAAGAACACGGTCGCCCGCCTGATGACCAAAGCGGTCATTAATCGCTTTAAAATGGTCAAGATCGACCTGAATGACAGAAAAAGGATGTTGGTGCGTCTGACACAATTTAGCGAGCGGACGGGCTTTTTCGAACAGTGCGCCACGGTTATATAAACGCGTTAAGGTGTCGTGCCACGCCTGCCACTGCAACGAGCTTTGCAGAACATACATGTTGCTAACCATCCGGCGAATCACATACCAGGAGATGAGTAACATGGTGGTAAAGAGCGCCCAcagc                                                                                                                                                                                                  <  2:1416037/289‑1 (MQ=255)
                                                                               ggCAGCATGAGAAAGAACACGGTCGCCCGCCTGATGACCAAAGCGGTCATTAATCGCTTTAAAATGGTCAAGATCGACCTGAATGACAGAAAAAGGATGTTGGTGCGTCTGACACAATTTAGCGAGCGGACGGGCTTTTTCGAACAGTGCGCCACGGTTATATAAACGCGTTAAGGTGTCGTGCCACGCCTGCCACTGCAACGAGCTTTGCAGAACATACATGTTGCTAACCATCCGGCGAATCACATACCAGGAGATGAGTAACATGGTGGTAAAGAGCGCCCAcagc                                                                                                                                                                                                  <  2:1054480/289‑1 (MQ=255)
                                                                               ggCAGCATGAGAAAGAACACGGTCGCCCGCCTGATGACCAAAGCGGTCATTAATCGCTTTAAAATGGTCAAGATCGACCTGAATGACAGAAAAAGGATGTTGGTGCGTCTGACACAATTTAGCGAGCGGACGGGCTTTTTCGAACAGTGCGCCACGGTTATATAAACGCGTTAAGGTGTCGTGCCACGCCTGCCACTGCAACGAGCTTTGCAGAACATACATGTTGCTAACCATCCGGCGAATCACATACCAGGAGATGAGTAACATGGTGGTAAAGAGCGCCCAcagc                                                                                                                                                                                                  <  1:1591786/289‑1 (MQ=255)
                                                                               ggCAGCATGAGAAAGAACACGGTCGCCCGCCTGATGACCAAAGCGGTCATTAATCGCTTTAAAATGGTCAAGATCGACCTGAATGACAGAAAAAGGATGTTGGTGCGTCTGACACAATTTAGCGAGCGGACGGGCTTTTTCGAACAGTGCGCCACGGTTATATAAACGCGTTAAGGTGTCGTGCCACGCCTGCCACTGCAACGAGCTTTGCAGAACATACATGTTGCTAACCATCCGGCGAATCACATACCAGGAGATGAGTAACATGGTGGTAAAGAGCGCCCAcagc                                                                                                                                                                                                  <  1:1030819/289‑1 (MQ=255)
                                                                                      tGAGAAAGAACACGGTCGCCCGCCTGATGACCAAAGCGGTCATTAATCGCTTTAAAATGGTCAAGATCGACCTGAATGACAGAAAAAGGATGTTGGTGCGTCTGACACAATTTAGCGAGCGGACGGGCTTTTTCGAACAGTGCGCCACGGTTATATAAACGCGTTAAGGTGTCGTGCCACGCCTGCCACTGCAACGAGCTTTGCAGAACATACATGTTGCTAACCATCCGGCGAATCACATACCAGGAGATGAGTAACATGGTGGTAAAGAGCGCCCACAGCAGGGTTa                                                                                                                                                                                           >  2:1472459/1‑289 (MQ=255)
                                                                                          aaagaaCACGGTCGCCCGCCTGATGACCAAAGCGGTCATTAATCGCTTTAAAATGGTCAAGATCGACCTGAATGACAGAAAAAGGATGTTGGTGCGTCTGACACAATTTAGCGAGCGGACGGGCTTTTTCGAACAGTGCGCCACGGTTATATAAACGCGTTAAGGTGTCGTGCCACGCCTGCCACTGCAACGAGCTTTGCAGAACATACATGTTGCTAACCATCCGGCGAATCACATACCAGGAGATGAGTAACATGGTGGTAAAGAGCGCCCAcagc                                                                                                                                                                                                  <  1:1555652/278‑1 (MQ=255)
                                                                                          aaagaaCACGGTCGCCCGCCTGATGACCAAAGCGGTCATTAATCGCTTTAAAATGGTCAAGATCGACCTGAATGACAGAAAAAGGATGTTGGTGCGTCTGACACAATTTAGCGAGCGGACGGGCTTTTTCGAACAGTGCGCCACGGTTATATAAACGCGTTAAGGTGTCGTGCCACGCCTGCCACTGCAACGAGCTTTGCAGAACATACATGTTGCTAACCATCCGGCGAATCACATACCAGGAGATGAGTAACATGGTGGTAAAGAGCGCCCACAGCAGGGTTaatgc                                                                                                                                                                                       <  1:899730/289‑1 (MQ=255)
                                                                                          aaagaaCACGGTCGCCCGCCTGATGACCAAAGCGGTCATTAATCGCTTTAAAATGGTCAAGATCGACCTGAATGACAGAAAAAGGATGTTGGTGCGTCTGACACAATTTAGCGAGCGGACGGGCTTTTTCGAACAGTGCGCCACGGTTATATAAACGCGTTAAGGTGTCGTGCCACGCCTGCCACTGCAACGAGCTTTGCAGAACATACATGTTGCTAACCATCCGGCGAATCACATACCAGGAGATGAGTAACATGGTGGTAAAGAGCGCCCACAGCAGGGTTaatgc                                                                                                                                                                                       <  1:801866/289‑1 (MQ=255)
                                                                                           aagaaCACGGTCGCCCGCCTGATGACCAAAGCGGTCATTAATCGCTTTAAAATGGTCAAGATCGACCTGAATGACAGAAAAAGGATGTTGGTGCGTCTGACACAATTTAGCGAGCGGACGGGCTTTTTCGAACAGTGCGCCACGGTTATATAAACGCGTTAAGGTGTCGTGCCACGCCTGCCACTGCAACGAGCTTTGCAGAACATACATGTTGCTAACCATCCGGCGAATCACATACCAGGAGATGAGTAACATGGTGGTAAAGAGCGCCCACAGCAGGGTTaatgc                                                                                                                                                                                       <  2:1636441/288‑1 (MQ=255)
                                                                                             gaaCACGGTAGCCCGCCTGATGACCAAAGCGGTCATTAATCGCTTTAAAATGGTCAAGATCGACCTGAATGACAGAAAAAGGATGTTGGTGCGTCTGACACAATTTAGCGAGCGGACGGGCTTTTTCGAACAGTGCGCCACGGTTATATAAACGCGTTAAGGTGTCGTGCCACGCCTGCCACTGCAACGAGCTTTGCAGAACATACATGTTGCTAACCATCCGGCGAATCACATACCAGGAGATGAGTAACATGGTGGTAAAGAGCGCCCACAGCAGGGTTaatgcaat                                                                                                                                                                                    <  2:1934502/289‑1 (MQ=255)
                                                                                              aaCACGGTCGCCCGCCTGATGACCAAAGCGGTCATTAATCGCTTTAAAATGGTCAAGATCGACCTGAATGACAGAAAAAGGATGTTGGTGCGTCTGACACAATTTAGCGAGCGGACGGGCTTTTTCGAACAGTGCGCCACGGTTATATAAACGCGTTAAGGTGTCGTGCCACGCCTGCCACTGCAACGAGCTTTGCAGAACATACATGTTGCTAACCATCCGGCGAATCACATACCAGGAGAt                                                                                                                                                                                                                                 >  1:122328/1‑243 (MQ=255)
                                                                                              aaCACGGTCGCCCGCCTGATGACCAAAGCGGTCATTAATCGCTTTAAAATGGTCAAGATCGACCTGAATGACAGAAAAAGGATGTTGGTGCGTCTGACACAATTTAGCGAGCGGACGGGCTTTTTCGAACAGTGCGCCACGGTTATATAAACGCGTTAAGGTGTCGTGCCACGCCTGCCACTGCAACGAGCTTTGCAGAACATACATGTTGCTAACCATCCGGCGAATCACATACCAGGAGAt                                                                                                                                                                                                                                 <  2:122328/243‑1 (MQ=255)
                                                                                              aaCACGGTCGCCCGCCTGATGACCAAAGCGGTCATTAATCGCTTTAAAATGGTCAAGATCGACCTGAATGACAGAAAAAGGATGTTGGTGCGTCTGACACAATTTAGCGAGCGGACGGGCTTTTTCGAACAGTGCGCCACGGTTATATAAACGCGTTAAGGTGTCGTGCCACGCCTGCCACTGCAACGAGCTTTGCAGAACATACATGTTGCTAACCATCCGGCGAATCACATACCAGGAGATGAGTAACATGGTGGTAAAGAGCGcc                                                                                                                                                                                                        <  1:1005783/268‑1 (MQ=255)
                                                                                              aaCACGGTCGCCCGCCTGATGACCAAAGCGGTCATTAATCGCTTTAAAATGGTCAAGATCGACCTGAATGACAGAAAAAGGATGTTGGTGCGTCTGACACAATTTAGCGAGCGGACGGGCTTTTTCGAACAGTGCGCCACGGTTATATAAACGCGTTAAGGTGTCGTGCCACGCCTGCCACTGCAACGAGCTTTGCAGAACATACATGTTGCTAACCATCCGGCGAATCACATACCAGGAGATGAGTAACATGGTGGTAAAGAGCGCCCACAGCAGGGt                                                                                                                                                                                             >  2:1589911/1‑279 (MQ=255)
                                                                                                  cGGTCGCCCGCCTGATGACCAAAGCGGTCATTAATCGCTTTAAAATGGTCAAGATCGACCTGAATGACAGAAAAAGGATGTTGGTGCGTCTGACACAATTTAGCGAGCGGACGGGCTTTTTTGAACAGTGCGCCACGGTTATATAAACGCGTTAAGGTGTCGTTCCACGCCTGCCACTGCAACGAGCTTTGCAGAACATACATGTTGCTAACCATCCGGCGAATCACATACCAGGAGATGAGTAACAtg                                                                                                                                                                                                                       >  2:1126245/1‑249 (MQ=255)
                                                                                                    gTCGCCCGCCTGATGACCAAAGCGGTCATTAATCGCTTTAAAATGGTCAAGATCGACCTGAATGACAGAAAAAGGATGTTGGTGCGTCTGACACAATTTAGCGAGCGGACGGGCTTTTTCGAACAGTGCGCCACGGTTATATAAACGCGTTAAGGTGTCGTGCCACGCCTGCCACTGCAACGAGCTTTGCAGAACATACATGTTGCTAACCATCCGGCGAATCACATACAAGGAGATGAGTAAACGGGTGGTAAAGAGAGCCCACACAAGGGATaatg                                                                                                                                                                                        >  2:1555652/1‑278 (MQ=255)
                                                                                                                            gTCATTAATCGCTTTAAAATGGTCAAGATCGACCTGAATGACAGAAAAAGGATGTTGGTGCGTCTGACACAATTTAGCGAGCGGACGGGCTTTTTAGAACAGTGCGCCACGGTTATATAAACGCGTTAAGGTGTCGTGCCACGCCTGCCACTGCAACGAGCTTTGCAGAACATACATGTTGCTAACCATCCGGCGCATCACATACCAGGAGATGAGTAACATGGTGGTAAAGAGCGCACAAAGCAGGGTTAATGCAATGCTGCTACTGCCGAAATcgccgcctacggc                                                                                                                                                      >  2:584025/1‑281 (MQ=255)
                                                                                                                                       cTTTAAAATGGTCAAGATCGACCTGAATGACAGAAAAAGGATGTTGGTGCGTCTGACACAATTTAGCGAGCGGACGGGCTTTTTCGAACAGTGCGCCACGGTTATATAAACGCGTTAAGGTGTCGTGCCACGCCTGCCACTGCAACGAGCTTTGCAGAacatac                                                                                                                                                                                                                                                                       <  1:857878/164‑1 (MQ=255)
                                                                                                                                         ttAAAATGGTCAAGATCGACCTGAATGACAGAAAAAGGATGTTGGTGCGTCTGACACAATTTAGCGAGCGGACGGGCTTTTTCGAACAGTGCGCCACGGTTATATAAACGCGTTAAGGTGTCGTGCCACGCCTGCCACTGCAACGAGCTTTGCAGAACATACATGTTGCTAACCATCCGGCGAATCACATACCAGGAGATGAGTAACATGGTGGTAAAGAGCGCCCACAGCAGGGTTAATGCAATGCTGATACTGCCGAAATCGCCGCGCACGCCTTCGCTTAACGTAt                                                                                                                                        >  2:300724/1‑289 (MQ=255)
                                                                                                                                         ttAAAATGGTCAAGATCGACCTGAATGACAGAAAAAGGATGTTGGTGCGTCTGACACAATTTAGCGAGCGGACGGGCTTTTTCGAACAGTGCGCCACGGTTATATAAACGCGTTAAGGTGTCGTGCCACGCCTGCCACTGCAACGAGCTTTGCAGAACATACATGTTGCTAACCATCCGGCGAATCACATACCAGGAGATGAGTAACATGGTGGTAAAGAGCGCCCACAGCAGGGTTAATGCAATGCTGATACTGCCGAAATCGCCGCGCACGCCTTCGCTTAACGTAt                                                                                                                                        >  2:1460973/1‑289 (MQ=255)
                                                                                                                                                  tCAAGATCGACCTGAATGACAGAAAAAGGATGTTGGTGCGTCTGACACAATTTAGCGAGCGGACGGGCTTTTTCGAACAGTGCGCCACGGTTATATAAACGCGTTAAGGTGTCGTCCCACGCCTGCCACTGCAACGAGCTTTGCAGAACATACATGTTGCTAACCATCCGGCGAATCACATACCAGGAGATGAGTAACATGGTGGTAAAGAGCGCCCACAGCAGGGTTAATGCAATGCTGATCCTGCCGACATCGCCGCGCCCGCCTTCGCTTAACTTATGGACCCGc                                                                                                                                >  2:509115/1‑288 (MQ=255)
                                                                                                                                                      gATCGACCTGAATGACAGAAAAAGGATGTTGGTGCGTCTGACACAATTTGGCGAGCGGACGGGCTTTTTCGAACAGTGCGACACGGTTATATAAAAGCGTTAAGATGTCGTGCCACGCCTGCCACTGCAACGAGCGTTGCAGAACATACATGTTGCTAACCATCCGGCGAATCACATACCAGGAGATGAGTAACATGGTGGTAAAGAGCGCCCACAGCAAGGTTAATGCAATGCTGATACTGCCGAAATAGCCGCGCACGCCTTCGCt                                                                                                                                                <  1:1413434/268‑1 (MQ=255)
                                                                                                                                                        tCGACCTGAATGACAGAAAAAGGATGTTGGTGCGTCTGACACAATTTAGCGAGCGGACGGGCTTTTTCGAACAGTGCGCCACGGTTATATAAACGCGTTAAGGTGTCGTGCCACGCCTGCCACTGCAACGAGCTTTGCAGAACATACATGTTGCTAACCATCCGGCGAATCACATACCAGGAGATGAGTAACATGGTGGTAAAGAGCGCCCACAGCAGGGTTAATGCAATGCTGATACTGCCGAAATCGCCGCGCACGCCTTCGCTTAACGTATGGACACGCACCAGca                                                                                                                         <  1:175876/289‑1 (MQ=255)
                                                                                                                                                           aCCTGAATGACAGAAAAAGGATGTTGGTGCGTCTGACACAATTTAGCGAGCGGACGGGCTTTTTCGAACAGTGCGCCACGGTTATATAAACGCGTTAAGGTGTCGTGCCACGCCTGCCACTGCAACGAGCTTTGCAGAACATACATGTTGCTAACCATCCGGCGAATCACATACCAGGAGATGAGTAACATGGTGGTAAAGAGCGCCCACAGCAGGGTTAATGCAATGCTGATACTGCCGAAATCGCCGCGCACGcc                                                                                                                                                      >  1:454552/1‑257 (MQ=255)
                                                                                                                                                           aCCTGAATGACAGAAAAAGGATGTTGGTGCGTCTGACACAATTTAGCGAGCGGACGGGCTTTTTCGAACAGTGCGCCACGGTTATATAAACGCGTTAAGGTGTCGTGCCACGCCTGCCACTGCAACGAGCTTTGCAGAACATACATGTTGCTAACCATCCGGCGAATCACATACCAGGAGATGAGTAACATGGTGGTAAAGAGCGCCCACAGCAGGGTTAATGCAATGCTGATACTGCCGAAATCGCCGCGCACGcc                                                                                                                                                      <  2:454552/257‑1 (MQ=255)
                                                                                                                                                                   gACAGAAAAAGGATGTTGGTGCGTCTGACACAATTTAGCGAGCGGACGGGCTTTTTCGAACAGTGCGCCACGGTTATATAAACGCGTTAAGGTGTCGTGCCACGCCTGCCACTGCAACGAGCTTTGCAGAACATACATGTTGCTAACCATCCGGCGAATCACATACCAGGAGATGAGTAACATGGTGGTAAAGAGCGCCCACAGCAGGGTTAATGCAATGCTGATACTGCCGAAATCGCCGCGCACGCCTTCGCTTAACGTATGGACACGCACCAGCACACCGTCGaaa                                                                                                              <  1:695695/289‑1 (MQ=255)
                                                                                                                                                                      aGAAAAAGGATGTTGGTGCGTCTGACACAATTTAGCGAGCGGACGGGCTTTTTCGAACAGTGCGCCACGGTTATATAAACGCGTTAAGGTGTCGTGCCACGCCTGCCACTGCAACGAGCTTTGCAGAACATACATGTTGCTAACCATCCGGCGAATCACATACCAGGAGATGAGTAACATGGTGGTAAAGAGCGCCCACAGCAGGGTTAATGCAATGCTGATACTGCCGAAATAGCCGCGCACGCCTTCGCTTAACGGAGGGACCCGCCCAAGAACACCGTCGCAATgg                                                                                                           >  2:1497269/1‑289 (MQ=255)
                                                                                                                                                                      aGAAAAAGGATGTTGGTGCGTCTGACACAATTTAGCGAGCGGACGGGCTTTTTCGAACAGTGCGCCACGGTTATATAAACGCGTTAAGGTGTCGTGCCACGCCTGCCACTGCAACGAGCTTTGCAGAACATACATGTTGCTAACCATCCGGCGAATCACATACCAGGAGATGAGTAACATGGTGGTAAAGAGCGCCCACAGCAGGGTTAAGGCAATGCTGATACTGCCGAAGTCGCCTCGCACGCCTTCGCTTAACGGATGGACACCCACCAGCACACCGTCAAAATgg                                                                                                           >  2:1597960/1‑289 (MQ=255)
                                                                                                                                                                          aaaGGATGTTGGTGCGTCTGACACAATTTAGCGAGCGGACGGGCTTTTTCGAACAGTGCGCCACGGTTATATAAACGCGTTAAGGTGTCGTGCCACGCCTGCCACTGCAACGAGCTTTGCAGAACATACATGTTGCTAACCATCCGGCGAATCACATACCAGGAGATGAGTAACATGGTGGTAAAGAGCGCCCACAGCAGGGTTAATGCAATGCTGATACTGCCGAAATCGCCGCGCACGCCGTCGCTTAACGGATGGACACGCACCATCACACCGTCGAAATGGTCCa                                                                                                       >  2:894861/1‑289 (MQ=255)
                                                                                                                                                                               aTGTTGGTGCGTCTGACACAATTTAGCGAGCGGACGGGCTTTTTCGAACAGTGCGCCACGGTTATATAAACGCGTTAAGGTGTCGTGCCACGCCTGCCACTGCAACGAGCTTTGCAGAACATACATGTTGCTAACCATCCGGCGAATCACATACCAGGAGATGAGTAACATGGTGGTAAAGAGCGCCCACAGCAGGGTTAATGCAATGCTGATACTGCCGAAATCGCCGCGCACGCCTTCGCt                                                                                                                                                >  1:1470802/1‑243 (MQ=255)
                                                                                                                                                                                tGTTGGTGCGTCTGACACAATTTAGCGAGCGGACGGGCTTTTTCGAACAGTGCGCCACGGTTATATAAACGCGTTAAGGTGTCGTGCCACGCCTGCCACTGCAACGAGCTTTGCAGAACATACATGTTGCTAACCATCCGGCGAATCACATACCAGGAGATGAGTAACATGGTGGTAAAGAGCGCCCACAGCAGGGTTAATGCAATGCTGATACTGCCGAAATCGCCGCGCACGCCTTCGCTTAACGTATGGACACGCACCAGCACACCGTCGAAATGGTCCAGACGt                                                                                                  <  1:2183466/288‑1 (MQ=255)
                                                                                                                                                                                  taggTGCGTCTGAGCCAATTTAGCGAGCGGACGGGCTTTTTCGAACAGTGCGCCACGGTTATATAAACGCGTTAAGGTGTCGTGCCACGCCTGCCACTGCAACGAGCTTTGCAGAACATACATGTTGCTAACCATCCGGCGAATCACATACCAGGAGATGAGTAACATGGTGGTAAAGAGCGCCCACAGCAGGGTTAATGCAATGCTGATACTGCCGAAATCGCCGCGCACGCCTTCGCTTAACGTATGGACACGCACCAGCACACCGTCGAAATGGTCCAGACGTTc                                                                                                <  2:368401/286‑1 (MQ=255)
                                                                                                                                                                                        cGTCTGACACAATTTAGCGAGCGGACGGGCTTTTTCGAACAGTGCGCCACGGTTATATAAACGCGTTAAGGTGTCGTGCCACGCCTGCCACTGCAACGAGCTTTGCAGAACATACATGTTGCTAACCATCCGGCGAATCACATACCAGGAGATGAGTAACATGGTGGTAAAGAGCGCCCACAGCAGGGTTAATGCAATGCTGATACTGCCGAAATCGCCGCGCACGCCTTCGCTTAACGTATGGACACGCACCAGCACACCGTCGAAATGGTCCAGACGTTCCCAGCTa                                                                                         >  1:1972466/1‑289 (MQ=255)
                                                                                                                                                                                                 ccattgcgcgagcgGACGGGCTTTGTCGAACAGTGCGCAACGATTAAATAAACGCGTTAAGGTGTCGGGCCACGCCTGCCACTGCAACGAGCTTTGCAGAACATACATGTTGCTAACCATCCGGCGAATCACATACCAGGAGATGAGTAACATGGTGGTAAAGAGCGCCCACAGCAGGGTTAATGCAATGCTGATACTGCCGAAATCGCCGCGCACGCCTTCGCTTAACGTATGGACACGCACCAGCACACCGTCGAAATGGTCCAGACGTTCCCAGCTAACATAGCGa                                                                                <  2:535775/282‑1 (MQ=255)
                                                                                                                                                                                                  aaTTTAGCGAGCGGACGGGCTTTTTCGAACAGTGCGCCACGGTTATATAAACGCGTTAAGGTGTCGTGCCACGCCTGCCACTGCAACGAGCTTTGCAGAACATACATGTTGCTAACCATCCGGCGAATCACATACCAGGAGATGAGTAACATGGTGGTAAAGAGCGCCCACAGCAGGGTTAATGCAATGCTGATACTGCCGAAATcg                                                                                                                                                                 <  2:1785588/207‑1 (MQ=255)
                                                                                                                                                                                                         cgagcgGACGGGCTTTTTCGAACAGTGCGCCACGGTTATATAAACGCGTTAAGGTGTCGTGCCACGCCTGCCACTGCAACGAGCTTTGCAGAACATACATGTTGCTAACCATCCGGCGAATCACATACCAGGAGATGAGTAACATGGTGGTAAAGAGCGCCCACAGCAGGGt                                                                                                                                                                                             <  1:1944244/172‑1 (MQ=255)
                                                                                                                                                                                                         cgagcgGACGGGCTTTTTCGAACAGTGCGCCACGGTTATATAAACGCGTTAAGGTGTCGTGCCACGCCTGCCACTGCAACGAGCTTTGCAGAACATACATGTTGCTAACCATCCGGCGAATCACATACCAGGAGATGAGTAACATGGTGGTAAAGAGCGCCCACAGCAGGGt                                                                                                                                                                                             >  2:1944244/1‑172 (MQ=255)
                                                                                                                                                                                                            gcgGACGGGCTTTTTCGAACAGTGCGCCACGGTTATATAAACGCGTTAAGGTGTCGTGCCACGCCTGCCACTGCAACGAGCTTTGCAGAACATACATGTTGCTAACCATCCGGCGAATCACATACCAGGAGATGAGTAACATGGTGGTAAAGAGCGCCCAcagc                                                                                                                                                                                                  >  2:864595/1‑164 (MQ=255)
                                                                                                                                                                                                            gcgGACGGGCTTTTTCGAACAGTGCGCCACGGTTATATAAACGCGTTAAGGTGTCGTGCCACGCCTGCCACGGCAACGAGCTTTGCAGAACATACATGTTGCTAACCATCCGGCGAATCACATACCAGGAGATGAGTAACATGGTGGTAAAGAGCGCCCACAGCAGGGTTAATGCAATGCTGATACTGCCGAAATCGCCGCGCACGCCTTCGCTTAACGTATGGACACGCACCAGCACACCGTCGAAATGGTCCAGACGTTCCCAGCTAACATAGCGACTGTCCATAc                                                                      <  2:165334/288‑1 (MQ=255)
                                                                                                                                                                                                              ggACGGGCTTTTTCGAACAGTGCGCCACGGTTATATAAACGCGTTAAGGTGTCGTGCCACGCCTGCCACTGCAACGAGCTTTGCAGAACATACATGTTGCTAACCATCCGGCGAATCACATACCAGGAGATGAGTAACATGGTGGTAAAGAGCGCCCACAGCAGGGTTAATGCAATGCTGATACTGCCGAAATCGCCGCGCACGCCTTCGCTTAACGTATGGACACGCGCCAGCACACCGTCGAAATGGTCCAGACGTTCCCAGCTAACATAGCGACTGTCCATACGaa                                                                   <  1:459867/289‑1 (MQ=255)
                                                                                                                                                                                                                              aCAGTGCGCCACGGTTATATAAACGCGTTAAGGTGTCGTGCCACGCCTGCCACTGCAACGAGCTTTGCAGAACATACATGTTGCTAACCATCCGGCGAATCACATACCAGGAGATGAGTAACATGGTGGTAAAGAGCGCCCACAGCAGGGTTAATGCAATGCTGATACTGCCGAAATCGCCGCGCACGCCTTCGCTTAACGTATGGACACGCACCAGCACACCGTCGAAATGGTCCAGACGTTCCCAGCTAACATAGCGACTGTCCATACGAATGCCGCCCCGCGTGTc                                                   <  1:2141041/289‑1 (MQ=255)
                                                                                                                                                                                                                                  tGCGCCACGGTTATATAAACGCGTTAAGGTGTCGTGCCACGCCTGCCACTGCAACGAGCTTTGCAGAACATACATGTTGCTAACCATCCGGCGAATCACATACCAGGAGATGAGTAACATGGTGGTAAAGAGCGCCCAcagc                                                                                                                                                                                                  <  1:1684675/142‑1 (MQ=255)
                                                                                                                                                                                                                                  tGCGCCACGGTTATATAAACGCGTTAAGGTGTCGTGCCACGCCTGCCACTGCAACGAGCTTTGCAGAACATACATGTTGCTAACCATCCGGCGAATCACATACCAGGAGATGAGTAACATGGTGGTAAAGAGCGCCCACAGCAGGGTTAATGCAATGCTGATACTGCCGAAATCGCCGCGCACGCCTTCGCTTAACGTATGGACACGCACCAGCACACCGTCGAAATGGTCCAGACGTTCCCAGCTAACATAGCGACTGTCCATACGAATGCCGCCCCGCGTGTc                                                   <  1:1585325/285‑1 (MQ=255)
                                                                                                                                                                                                                                   gcgcCACGGTTATATAAACGCGTTAAGGTGTCGTGCCACGCCTGCCACTGCAACGAGCTTTGCAGAACATACATGTTGCTAACCATCCGGCGAATCACATACCAGGAGATGAGTAACATGGTGGTAAAGAGCGCCCACAGCAGGGTTAATGCAATGCTGATACTGCCGAAATCGCCGCGCACGCCTTCGCTTAACGTATGGACACGCACCAGCACACCGTCGAAATGGTCCAGACGTTCCCAGCTAACATAGCGACTGTCCATACGAATGCCGCCCCGCGTGTCAt                                                 <  1:762821/286‑1 (MQ=255)
                                                                                                                                                                                                                                   gcgcCACGGTTATATAAACGCGTTAAGGTGTCGTGCCACGCCTGCCACTGCAACGAGCTTTGCAGAACATACATGTTGCTAACCATCCGGCGAATCACATACCAGGAGATGAGTAACATGGTGGTAAAGAGCGCCCACAGCAGGGTTAATGCAATGCTGATACTGCCGAAATCGCCGCGCACGCCTTCGCTTAACGTATGGACACGCACCAGCACACCGTCGAAATGGTCCAGACGTTCCCAGCTAACATAGCGACTGTCCATACGAATGCCGCCCCGCGTGTCATGt                                               >  2:312720/1‑288 (MQ=255)
                                                                                                                                                                                                                                            ttgtataAACGCGGTAAGGTTTCGTGCCACGCCTCCCACTGCAACGAGCTTTGCAGAACATACATGTTGCTAACCATCCGGCGAATCACATACCAGGAGATGAGTAACATGGTGGTAAAGAGCGCCCACAGCAGGGTTAATGCAATGCTGATACTGCCGAAATCGCCGCGCACGCCTTCGCTTAACGTATGGACACGCACCAGCACACCGTCGAAATGGTCCAGACGTTCCCAGCTAACATAGCGACTGTCCATACGAATGCCGCCCCGCGTGTCAt                                                 <  2:388077/274‑1 (MQ=255)
                                                                                                                                                                                                                                            ttATATAAACGCGTTAAGGTGTCGTGCCACGCCTGCCACTGCAACGAGCTTTGCAGAACATACATGTTGCTAACCATCCGGCGAATCACATACCAGGAGATGAGTAACATGGTGGTAAAGAGCGCCCACAGCAGGGTTAATGCAATGCTGATACTGCCGAAATCGCCGCGCACGCCTTCGCt                                                                                                                                                <  1:347370/182‑1 (MQ=255)
                                                                                                                                                                                                                                            ttATATAAACGCGTTAAGGTGTCGTGCCACGCCTGCCACTGCAACGAGCTTTGCAGAACATACATGTTGCTAACCATCCGGCGAATCACATACCAGGAGATGAGTAACATGGTGGTAAAGAGCGCCCACAGCAGGGTTAATGCAATGCTGATACTGCCGAAATCGCCGCGCACGCCTTCGCTTAACGTATGGACACg                                                                                                                                 >  1:185595/1‑197 (MQ=255)
                                                                                                                                                                                                                                            ttATATAAACGCGTTAAGGTGTCGTGCCACGCCTGCCACTGCAACGAGCTTTGCAGAACATACATGTTGCTAACCATCCGGCGAATCACATACCAGGAGATGAGTAACATGGTGGTAAAGAGCGCCCACAGCAGGGTTAATGCAATGCTGATACTGCCGAAATCGCCGCGCACGCCTTCGCTTAACGTATGGACACGCACCAGCACACACTCGAAATGGTCCAGACGGTCCCAGCTAACATACAGACTGTCCATACGAATGCCGCCCCCCGTGTCATGTTCCAATGcc                                      >  2:849065/1‑288 (MQ=255)
                                                                                                                                                                                                                                            ttATATAAACGCGTTAAGGTGTCGTGACACGCCTGCCACTGCAACGAGCTTTGCAGAACATACATGTTGCTAACCATCCGGCGAATCACATACCAGGAGATGAGTAACATGGTGGTAAAGAGCGCCCACAGCAGGGTTAATGCAATGCTGATACTGCCGAAATCGCCGCGCACGCCTTCGCTTAACGTATGGACACGCACCAGCACACCGTCGAAATGGTCCAGACGTTCCCAGCTAACATAGCGACTGTCCATACGAATGCCGCCCCGCGTGTCATGTTCCATTg                                        >  1:2076224/1‑286 (MQ=255)
                                                                                                                                                                                                                                                    aCGCGTTAAGGTGTCGTGCCACGCCTGCCACTGCAACGAGCTTTGCAGAACATACATGTTGCTAACCATCCGGCGAATCACATACCAGGAGATGAGTAACATGGTGGTAAAGAGCGCCCACAGCAGGGTTAATGCAATGCTGATACTGCCGAAATCGCCGCGCACGCCTTCGCTTAACGTATGGACACGCACCAGCACACCGTCGAAATGGTCCAGACGTTCCCAGCTAACATAGCGACTGTCCATACGAATGCCGCCCCGCGTGTCATGTTCCATTGCCTGCGCCAGc                             >  1:948380/1‑289 (MQ=255)
                                                                                                                                                                                                                                                    aCGCGTTAAGGTGTCGTGCCACGCCTGCCACTGCAACGAGCTTTGCAGAACATACATGTTGCTAACCATCCGGCGAATCACATACCAGGAGATGAGTAACATGGTGGTAAAGAGCGCCCACAGCAGGGTTAATGCAATGCTGATACTGCCGAAATCGCCGCGCACGCCTTCGCTTAACGTATGGACACGCACCAGCACACCGTCGAAATGGTCCAGACGTTCCCAGCTAACATAGCGACTGTCCATACGAATGCCGCCCCGCGTGTCATGTTCCATTGCCTGCGCCAGc                             >  1:426913/1‑289 (MQ=255)
                                                                                                                                                                                                                                                      gcgTTAAGGTGTCGTGCCACGCCTGCCACTGCAACGAGCTTTGCAGAACATACATGTTGCTAACCATCCGGCGAATCACATACCAGGAGATGAGTAACATGGTGGTAAAGAGCGCCCACAGCAGGGTTAATGCAATGCTGATACTGCCGAAATCGCCGCGCACGCCTTCGCTTAACGTATGGaca                                                                                                                                   >  2:1999301/1‑185 (MQ=255)
                                                                                                                                                                                                                                                      gcgTTAAGGTGTCGTGCCACGCCTGCCACTGCAACGAGCTTTGCAGAACATACATGTTGCTAACCATCCGGCGAATCACACCCCAGGAGCTGAGTAACATGGTGGTAAAGAGCGCCCACAGCAGGGTTAATGCAATGCTGATACCGCCGAAATCGCCCCCCACGCCTTCGCTTAACGTATGGACACGCCCCAGCACACCCTCCAAATTGTCCACACGTTCCCAACTAACATACCTACAGTCCCACAGAATCCCACCCCCCGTGCCATGTCCTActgcctgcctccgaca                           >  2:983830/1‑281 (MQ=255)
                                                                                                                                                                                                                                                         ttAAGGTGTCGTGCCACGCCTGCCACTGCAACGAGCTTTGCAGAACATACATGTTGCTAACCATCCGGCGAATcac                                                                                                                                                                                                                                             <  1:1880508/76‑1 (MQ=255)
                                                                                                                                                                                                                                                         ttAAGGTGTCGTGCCACGCCTGCCACTGCAACGAGCTTTGCAGAACATACATGTTGCTAACCATCCGGCGAATCACATACCAGGAGATGAGTAACATGGTGGTAAAGAGCGCCCACAGCAGGGTTAATGCAATGCTGATACTGCCGAAATCGCCGCGCACGCCTTCGCTTAACGTATGGACACGCCCCAGCCCACCGTCGAAATGGTCCAGACGTTCCCAGCTAACATAGCGACTGTCCATACGAATGCCGCCCCGCGTGTCCTTTTCCATTTCCTGCCCCAGCCAgg                         >  2:2152/1‑288 (MQ=255)
                                                                                                                                                                                                                                                                gtCGTGCCACGCCTGCCACTGCAACGAGCTTTGCAGAACATACATGTTGCTAACCATCCGGCGAATCACATACCAGGAGATGAGTAACATGGTGGTAAAGAGCGCCCACAGCAGGGTTAATGCAATGCTGATACTGCCGAAATCGCCGCGCACGCCTTCGCTTAACGTATGGACACGCACCAGCACACCGTCGAAATGGTCCAGACGTTCCCAGCTAACATAGCGACTGTCCATACGAATGCCGCCCCGCGTGTCATGTTCCATTGCCTGCGCCAGCAAGGCCAGTTCa                 <  1:406636/289‑1 (MQ=255)
                                                                                                                                                                                                                                                                  cGTGCCACGCCTGCCACTGCAACGAGCTTTGCAGAACATACATGTTGCTAACCATCCGGCGAATCACATACCAGGAGATGAGTAACATGGTGGTAAAGAGCGCCCACAGCAGGGTTAATGCAATGCTGATACTGCCGAAATCGCCGCGCACGCCTTCGCTTAACGTATGGACACGCACCAGCACACCGTCGAAATGGTCCAGACGTTCCCAGCTAACATAGCGACTGTCCATACGAATGCCGCCCCGCGTGTCATGTTCCATTGCCTGCGCCAGCAAGGCCAGTTCACg               >  2:927927/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                   gTGCCACGCCTGCCACTGCAACGAGCTTTGCAGAACATACATGTTGCTAACCATCCGGCGAATAACATACCAGGAGATGAGTAACATGGTGGTAAAGAGCGCCCACAGCAGGGTTAATGCAATGCTGATACTGCCGAAATCGCCGCGCACGCCTTCGCTTAACGTATGGACTCGCACCAGCACACCGTCGAAATGGTCCAGACGTTCCCAGCTAACATAGCGACTGTCCATACGAATGCCGCCCCGCGTGTCATGtt                                              >  1:2142969/1‑257 (MQ=255)
                                                                                                                                                                                                                                                                    tGCCACGCCTGCCACTGCAACGAGCTTTGCAGAACATACATGTTGCTAACCATCCGGCGAATCACATACCAGGAGATGAGTAACATGGTGGTAAAGAGCGCCCACAGCAGGGTTAATGCAATGCTGATACTGCCGAAATCGCCGCGCa                                                                                                                                                          <  1:870968/148‑1 (MQ=255)
                                                                                                                                                                                                                                                                               ccACTGCAACGAGCTTTGCAGAACATACATGTTGCTAACCATCCGGCGAATCACATACCAGGAGATGAGTAACATGGTGGTAAAGAGCGCCCACAGCAGGGTTAATGCAATGCTGATACTGCCGAAATCGCCGCGCACGCCTTCGCTTAACGTATGGACACGCACCAGCACACCGTCGAAATGGTCCAGACGTTCCCAGCTAACATAGCGACTGTCCATACGAATGCCGCCCCGCGTGTCATGTTCCATTGCCTGCGCCAGCCAGGCCAGTTCACGAGGATCAAAAata  >  1:1782546/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                                        |||                                                                                                                                                                                                                                                                                     
CTGGCAGAATCACACAAAACTCCTCACCACCGACCCGCCCGGCAACGTCCTGCGCACGCAAGGAACTGCTAATTAATCCGGCAGCATGAGAAAGAACACGGTCGCCCGCCTGATGACCAAAGCGGTCATTAATCGCTTTAAAATGGTCAAGATCGACCTGAATGACAGAAAAAGGATGTTGGTGCGTCTGACACAATTTAGCGAGCGGACGGGCTTTTTCGAACAGTGCGCCACGGTTATATAAACGCGTTAAGGTGTCGTGCCACGCCTGCCACTGCAAGCTGCTTTGCAGAACATACATGTTGCTAACCATCCGGCGAATCACATACCAGGAGATGAGTAACATGGTGGTAAAGAGCGCCCACAGCAGGGTTAATGCAATGCTGATACTGCCGAAATCGCCGCGCACGCCTTCGCTTAACGTATGGACACGCACCAGCACACCGTCGAAATGGTCCAGACGTTCCCAGCTAACATAGCGACTGTCCATACGAATGCCGCCCCGCGTGTCATGTTCCATTGCCTGCGCCAGCAAGGCCAGTTCACGAGGATCAAAAATA  >  CP042583/1664026‑1664585

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A