Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A0 F0 I1 R1 4926 296.4 4517418 96.8% 4372860 264.2

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA CP042583 1,676,503 3 bp→TCG intergenic (–/–) – / – –/–

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0425831,676,5030AT99.5% 502.1 / NA 210intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base A (0/0);  major base T (115/94);  minor base G (0/1);  total (115/95)
Fisher's exact test for biased strand distribution p-value = 4.52e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*CP0425831,676,5040GC99.5% 498.6 / NA 210intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base G (0/0);  major base C (114/95);  minor base A (1/0);  total (115/95)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*CP0425831,676,5050CG100.0% 499.0 / NA 210intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base G (115/95);  total (115/95)

Only 100 of 210 total aligned reads displayed.

CGCAAGATAAAGCCCATCTCTGCCATCAGAAACGGCATCGATGACATAACCCGCTTCGGAAAGCCCCTGCGTTACCCATTCCTGGGTCCTTTGATTATCTTCAATAAGTAGAATCTTCATGAAAATAATATGCCATAAATCATATGTTATAGAAACAGCCTGGTTCATTACAAAATTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTTCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCAGCGTAGCAACGGCAGCATTTAGTTTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGCGTGCACATTTTGAACCAGCAAACAGGAAAACCCGCTGCTGACGTGACAGTCACTCTTGAAAAGAAGGCGGATAACGGCTGGTTACAACTTAATACCGCCAAAACAGATAAGGATGGACGAATTAAGGCACTGTGGCCCGAGCAAACTGCAACTACGGGCGATTACCGTGTCGTATTTAAAACCGGGGACTATTTCAAGAAACAAAATCTTGAAAG  >  CP042583/1676227‑1676783
                                                                                                                                                                                                                                                                                    |||                                                                                                                                                                                                                                                                                      
 gcAAGATAAAGCCCATCTCTGCCATCAGAAACGGCATCGATGACATAACCCGCTTCGGAAAGCCCCTGCGTTACCCATTCCTGGGTCCTTTGATTATCTTCAATAAGTAGAATCTTCATGAAAATAATATGCCATAAATCATATGTTATAGAAACAGCCTGGTTCATTACAAAATTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTTCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGgc                                                                                                                                                                                                                                                                             <  2:610207/289‑1 (MQ=255)
               aTCTCTGCCATCAGAAACGGCATCGATGACATAACCCGCTTCGGAAAGCCCCTGCGTTACCCATTCCTGGGTCCTTTGATTATCTTCAATAAGTAGAATCTTCATGAAAATAATATGCCATAAATCATATGTTATAGAAACAGCCTGGTTCATTACAAAATTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTTCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCAttttcattac                                                                                                                                                                                                                                                               <  1:344214/289‑8 (MQ=255)
                    tGCCATCAGAAACGGCATCGATGACATAACCCGCTTCGGAAAGCCCCTGCGTTACCCATTCCTGGGTCCTTTGATTATCTTCAATAAGTAGAATCTTCATGAAAATAATATGCCATAAATCATATGTTATAGAAACAGCCTGGTTCATTACAAAATTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTTCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACcttct                                                                                                                                                                                                                                                          <  1:551189/289‑1 (MQ=255)
                    tGCCATCAGAAACGGCATCGATGACATAACCCGCTTCGGAAAGCCCCTGCGTTACCCATTCCTGGGTCCTTTGATTATCTTCAATAAGTAGAATCTTCATGAAAATAATATGCCATAAATCATATGTTATAGAAACAGCCTGGTTCATTACAAAATTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTTCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACcttct                                                                                                                                                                                                                                                          <  1:1106968/289‑1 (MQ=255)
                    tGCCATCAGAAACGGCATCGATGACATAACCCGCTTCGGAAAGCCCCTGCGTTACCCATTCCTGGGTCCTTTGATTATCTTCAATAAGTAGAATCTTCATGAAAATAATATGCCATAAATCATATGTTATAGAAACAGCCTGGTTCATTACAAAATTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTTCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGAAGCATTTTCATTACcttct                                                                                                                                                                                                                                                          >  2:340403/1‑289 (MQ=255)
                         tCAGAAACGGCATCGATGACATAACCCGCTTCGGAAAGCCCCTGCGTTACCCATTCCTGGGTCCTTTGATTATCTTCAATAAGTAGAATCTTCATGAAAATAATATGCCATAAATCATATGTTATAGAAACAGCCTGGTTCATTACAAAATTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTTCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGt                                                                                                                                                                                                                                                     <  1:2125770/289‑1 (MQ=255)
                              aaCGGCATCGATGACATAACCCGCTTCGGAAAGCCCCTGCGTTACCCATTCCTGGGTCCTTTGATTATCTTCAATAAGTAGAATCTTCATGAAAATAATATGCCATAAATCATATGTTATAGAAACAGCCTGGTTCATTACAAAATTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTTCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGgcagca                                                                                                                                                                                                                                                                         <  1:390751/264‑1 (MQ=255)
                              aaCGGCATCGATGACATAACCCGCTTCGGAAAGCCCCTGCGTTACCCATTCCTGGGTCCTTTGATTATCTTCAATAAGTAGAATCTTCATGAAAATAATATGCCATAAATCATATGTTATAGAAACAGCCTGGTTCATTACAAAATTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTTCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGgcagca                                                                                                                                                                                                                                                                         >  2:390751/1‑264 (MQ=255)
                                                aCCCGCTTCGGAAAGCCCCTGCGTTACCCATTCCTGGGTCCTTTGATTATCTTCAATAAGTAGAATCTTCATGAAAATAATATGCCATAAATCATATGTTATAGAAACAGCCTGGTTCATTACAAAATTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTTCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTc                                                                                                                                                                                                                              <  2:1715775/289‑1 (MQ=255)
                                                     cTTCGGAAAGCCCCTGCGTTACCCATTCCTGGGTCCTTTGATTATCTTCAATAAGTAGAATCTTCATGAAAATAATATGCCATAAATCATATGTTATAGAAACAGCCTGGTTCATTACAAAATTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTTCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGc                                                                                                                                                                                                                         >  1:1296641/1‑289 (MQ=255)
                                                     cTTCGGAAAGCCCCTGCGTTACCCATTCCTGGGTCCTTTGATTATCTTCAATAAGTAGAATCTTCATGAAAATAATATGCCATAAATCATATGTTATAGAAACAGCCTGGTTCATTACAAAATTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTTCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAAAGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCTCACAACAAAACATTCTTAGc                                                                                                                                                                                                                         >  1:2110791/1‑289 (MQ=255)
                                                       tCGGAAAGCCCCTGCGTTACCCATTCCTGGGTCCTTTGATTATCTTCAATAAGTAGAATCTTCATGAAAATAATATGCCATAAATCATATGTTATAGAAACAGCCTGGTTCATTACAAAATTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTTCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGCGt                                                                                                                                                                                                                       >  1:1394786/1‑289 (MQ=255)
                                                         ggAAAGCCCCTGCGTTACCCATTCCTGGGTCCTTTGATTATCTTCAATAAGTAGAATCTTCATGAAAATAATATGCCATAAATCATATGTTATAGAAACAGCCTGGTTCATTACAAAATTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTTCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGCGTGc                                                                                                                                                                                                                     <  2:78511/289‑1 (MQ=255)
                                                               ccccTGCGTTACCCATTCCTGGGTCCTTTGATTATCTTCAATAAGTAGAATCTTCATGAAAATAATATGCCATAAATCATATGTTATAGAAACAGCCTGGTTCATTACAAAATTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTTCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGCGTGCACAttt                                                                                                                                                                                                               >  1:774911/1‑289 (MQ=255)
                                                                  cTGCGTTACCCATTCCTGGGTCCTTTGATTATCTTCAATAAGTAGAATCTTCATGAAAATAATATGCCATAAATCATATGTTATAGAAACAGCCTGGTTCATTACAAAATTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTTCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGCGTGCACATTTTGa                                                                                                                                                                                                            >  1:1570814/1‑289 (MQ=255)
                                                                   tGCGTTACCCATTCCTGGGTCCTTTGATTATCTTCAATAAGTAGAATCTTCATGAAAATAATATGCCATAAATCATATGTTATAGAAACAGCCTGGTTCATTACAAAATTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTTCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGCGTGCACATTTTGaa                                                                                                                                                                                                           <  1:436782/289‑1 (MQ=255)
                                                                     cGTTACCCATTCCTGGGTCCTTTGATTATCTTCAATAAGTAGAATCTTCATGAAAATAATATGCCATAAATCATATGTTATAGAAACAGCCTGGTTCATTACAAAATTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTTCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGCGTGCACATTTTGAAcc                                                                                                                                                                                                         >  1:1975953/1‑289 (MQ=255)
                                                                          cccATTCCTGGGTCCTTTGATTATCTTCAATAAGTAGAATCTTCATGAAAATAATATGCCATAAATCATATGTTATAGAAACAGCCTGGTTCATTACAAAATTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTTCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGCGTGCACATTTTGAACCAGCaa                                                                                                                                                                                                    >  1:639870/1‑289 (MQ=255)
                                                                                         tttGATTATCTTCAATAAGTAGAATCTTCATGAAAATAATATGCCATAAATCATATGTTATAGAAACAGCCTGGTTCATTACAAAATTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTTCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGCGTGc                                                                                                                                                                                                                     <  2:365206/257‑1 (MQ=255)
                                                                                         tttGATTATCTTCAATAAGTAGAATCTTCATGAAAATAATATGCCATAAATCATATGTTATAGAAACAGCCTGGTTCATTACAAAATTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTTCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGCGTGCACATTTTGAACCAGCAAACAGGa                                                                                                                                                                                              <  1:333057/280‑1 (MQ=255)
                                                                                         tttGATTATCTTCAATAAGTAGAATCTTCATGAAAATAATATGCCATAAATCATATGTTATAGAAACAGCCTGGTTCATTACAAAATTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTTCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGCGTGCACATTTTGAACCAGCAAACAGGAAAAcc                                                                                                                                                                                         >  2:2098491/1‑285 (MQ=255)
                                                                                         tttGATTATCTTCAATAAGTAGAATCTTCATGAAAATAATATGCCATAAATCATATGTTATAGAAACAGCCTGGTTCATTACAAAATTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTTCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGCGTGCACATTTTGAACCAGCAAACAGGAAAACCCgct                                                                                                                                                                                     <  2:1975953/289‑1 (MQ=255)
                                                                                                   ttCAATAAGTAGAATCTTCATGAAAATAATATGCCATAAATCATATGTTATAGAAACAGCCTGGTTCATTACAAAATTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTTCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGCGTGCACATTTTGAACCAGCAAACAGGAAAACCCGCTGCTGACGTg                                                                                                                                                                            >  2:1066176/1‑288 (MQ=255)
                                                                                                   ttCAATAAGTAGAATCTTCATGAAAATAATATGCCATAAATCATATGTTATAGAAACAGCCTGGTTCATTACAAAATTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTTCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGCGTGCACATTTTGAACCAGCAAACAGGAAAACCCGCTGCTGACGTGa                                                                                                                                                                           >  2:1611386/1‑289 (MQ=255)
                                                                                                       aTAAGTAGAATCTTCATGAAAATAATATGCCATAAATCATATGTTATAGAAACAGCCTGGTTCATTACAAAATTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTTCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACaaaa                                                                                                                                                                                                                                   >  1:97551/1‑229 (MQ=255)
                                                                                                       aTAAGTAGAATCTTCATGAAAATAATATGCCATAAATCATATGTTATAGAAACAGCCTGGTTCATTACAAAATTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTTCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGCGTGCACATTTTGAACCAGCAAACAGGAAAACCCGCTGCTGACGTGACAGt                                                                                                                                                                       <  1:1650077/289‑1 (MQ=255)
                                                                                                                    tCATGAAAATAATATGCCATAAATCATATGTTATAGAAACAGCCTGGTTCATTACAAAATTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTTCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGCGTGCACATTTTGAACCAGCAAACAGGAAAACCCGCTGCTGACGTGACAGTCACTCTTGAAaag                                                                                                                                                          >  1:2237954/1‑289 (MQ=255)
                                                                                                                    tCATGAAAATAATATGCCATAAATCATATGTTATAGAAACAGCCTGGTTCATTACAAAATTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTTCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGCGTGCACATTTTGAACCAGCAAACAGGAAAACCCGCTGCTGACGTAACAGTCACTCTTGAAaag                                                                                                                                                          >  2:447222/1‑289 (MQ=255)
                                                                                                                      aTGAAAATAATATGCCATAAATCATATGTTATAGAAACAGCCTGGTTCATTACAAAATTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTTCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGCGTGCACATTTTGAACCAGCAAACAGGAAAACCCgctg                                                                                                                                                                                    <  2:836342/261‑1 (MQ=255)
                                                                                                                        gAAAATAATATGCCATAAATCATATGTTATAGAAACAGCCTGGTTCATTACAAAATTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTTCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGCGTGCACATTTTGAACCAGCAAACAGGAAAACCCGCTGCTGACGTGACAGTCACTCTTGAAAAGAAgg                                                                                                                                                      <  1:1066176/289‑1 (MQ=255)
                                                                                                                                  tGCCATAAATCATATGTTATAGAAACAGCCTGGTTCATTACAAAATTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTTCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGCGTGCACATTTTGAACCAGCAAACAGGAAAACCCGCTGCTGACGTGACAGTCACTCTTGAAAAGAAGGCGGATAACgg                                                                                                                                            <  1:665514/289‑1 (MQ=255)
                                                                                                                                       tAAATCATATGTTATAGAAACAGCCTGGTTCATTACAAAATTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTTCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGCGTGCACATTTTGAACCAGCAAACAGGAAAACCCGCTGCTGACGTGACAGt                                                                                                                                                                       >  1:782087/1‑257 (MQ=255)
                                                                                                                                         aaTCATATGTTATAGAAACAGCCTGGTTCATTACAAAATTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTTCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGCGTGCACATTTTGAACCAGCAAACAGGAAAACCCGCTGCTGACGTGACAGTCACTCTTGAAAAGAAGGCGGATAACGGCTGGTTa                                                                                                                                     <  2:883379/289‑1 (MQ=255)
                                                                                                                                         aaTCATATGTTATAGAAACAGCCTGGTTCATTACAAAATTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTTCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGCGTGCACATTTTGAACCAGCAAACAGGAAAACCCGCTGCTGACGTGACAGTCACTCTTGAAAAGAAGGCGGATAACGGCTGGTTa                                                                                                                                     <  2:2130985/289‑1 (MQ=255)
                                                                                                                                               atGTTATAGAAACAGCCTGGTTCATTACAAAATTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTTCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGCGTGCACATTTTGAACCAGCAAACAGGAAAACCCGCTGCTGACGTGACAGTAACTCTTGAAAAGAAGGCGGATAACGGCTGGTTACAACtt                                                                                                                               >  1:1963029/1‑289 (MQ=255)
                                                                                                                                                   tataGAAACAGCCTGGTTCATTACAAAATTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTTCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGCGTGCACATTTTGAACCAGCAAACAGGAAAACCCGCTGCTGACGTGACAGTCACTCTTGAAAAGAAGGCGGATAACGGCTGGTTACAACTTAAt                                                                                                                            >  2:436687/1‑288 (MQ=255)
                                                                                                                                                    ataGAAACAGCCTGGTTCATTACAAAATTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTTCGCTATCCTAAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGCGTGCACATTTTGAACCAGCAAACAGGAAAACCCGCTGCTGACGTGACAGTCACTCTTGAAAAGAAGGCGGATAACGGCTGGTTACAACTTAATAc                                                                                                                          <  2:1599922/289‑1 (MQ=255)
                                                                                                                                                     taGAAACAGCCTGGTTCATTACAAAATTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTTCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGCGTGCACATTTTGAACCAGCCAACAGGAAAACCCGCTGCTGACGTAACAGTCACCCTTGAAAAGAAGGCGGAAAACGGCTGGTTACAACTTAATAc                                                                                                                          >  2:1013062/1‑288 (MQ=255)
                                                                                                                                                     taGAAACAGCCTGGTTCATTACAAAATTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTTCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGCGTGCACATTTTGAACCAGCAAACAGGAAAACCCGCTGCTGACGTGACAGTCACTCTTGAAAAGAAGGCGGATAACGGCTGGTTACAACTTAATAc                                                                                                                          >  2:2168911/1‑288 (MQ=255)
                                                                                                                                                        aaaCAGCCTGGTTCATTACAAAATTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTTCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGCGTGCACATTTTGAACCAGCAAACAGGAAAACCCGCTGCTGACGTGACAGTCACTCTTGAAAAGAAGGCGGATAACGGCTGGTTACAACTTAATACCGcc                                                                                                                      <  1:436074/289‑1 (MQ=255)
                                                                                                                                                              ccTGGTTCATTACAAAATTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTTCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGCGTGCACATTTTGAACCAGCAAACAGGAAAACCCGCTGCTGACGTGACAGTCa                                                                                                                                                                     <  2:67815/236‑1 (MQ=255)
                                                                                                                                                              ccTGGTTCATTACAAAATTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTTCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGCGTGCACATTTTGAACCAGCAAACAGGAAAACCCACTGCTGACGTGACAGTCACTCTTGAAAAGAAGGCGGATAACGGCTGGTTACAACTTAATACCGCCAAAACa                                                                                                                >  1:104960/1‑289 (MQ=255)
                                                                                                                                                               cTGGTTCATTACAAAATGGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTTCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGCGTGCACATTTTGAACCAGCAAACAGGAAAACCCACTGCTGACGTGACAGTCACTCTTGAAAAGAAGGCGGATAACGGCTGGTTACAACTTAATACCGCCaaaa                                                                                                                  <  2:104960/286‑1 (MQ=255)
                                                                                                                                                                 ggTTCATTACAAAATTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTTCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGCGTGCACATTTTGAACCAGCAAACAGGAAAACCCGCTGCTGACGTGACAGTCACTCTTGAAAAGAAGGCGGATAACGGCTGGTTACAACTTAATACCGCCAAAACAGAt                                                                                                             <  1:68779/289‑1 (MQ=255)
                                                                                                                                                                 ggTTCATTACAAAATTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTTCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGCGTGCACATTTTGAACCAGCAAACAGGAAAACCCGCTGCTGACGTGACAGTCACTCTTGAAAAGAAGGCGGATAACGGCTGGTTACAACTTAATACCGCCAAAACAGAt                                                                                                             <  2:1852178/289‑1 (MQ=255)
                                                                                                                                                                        tACAAAATTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTTCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGCGTGCACATTTTGAACCAGCAAACAGGAAAACCCGCTGCTGACGTGACAGTCACTCTTGAAAAGAAGGCGGATAACGGCTGGTTACAACTTAATACCGCCAAAACAGATAAGGATg                                                                                                      >  1:403460/1‑289 (MQ=255)
                                                                                                                                                                        tACAAAATTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTTCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGCGTGCACATTTTGAACCAGCAAACAGGAAAACCCGCTGCTGACGTGACAGTCACTCTTGAAAAGAAGGCGGATAACGGCTGGTTACAACTTAATACCGCCAAAACAGATAAGGATg                                                                                                      >  2:1253876/1‑289 (MQ=255)
                                                                                                                                                                          cAAAATTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTTCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGCGTGCACATTTTGAACCAGCAAACAGGAAAACCCGCTGCTGACGTGACAGTCACTCTTGAAAAGAAGGCGGATAACGGCTGGTTACAACTTAATACCGCCAAAACAGATAAGGATGGa                                                                                                    <  1:1611386/289‑1 (MQ=255)
                                                                                                                                                                            aaaTTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTTCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGCGTGCACATTTTGAACCAGCAAACAGGAAAACCCGCTGCTGACGTGACAGTCACTCTTGAAAAGAAGGCGGATAACGGCTGGTTACAACTTAATACCGCCAAAACAGATAAGGATGGACg                                                                                                  <  2:1528276/289‑1 (MQ=255)
                                                                                                                                                                             aaTTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTTCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGCGTGCACATTTTGAACCAGCAAACAGGAAAACCCGCTGCTGACGTGACAGTCACTCTTGAAAAGAAGGCGGATAACGGCTGGTTACAACTTAATACCGCCAAAACAGa                                                                                                              <  1:62121/276‑1 (MQ=255)
                                                                                                                                                                             aaTTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTTCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGCGTGCACATTTTGAACCAGCAAACAGGAAAACCCGCTGCTGACGTGACAGTCACTCTTGAAAAGAAGGCGGATAACGGCTGGTTACAACTTAATACCGCCAAAACAGATAAGGATGGACGa                                                                                                 >  2:807005/1‑289 (MQ=255)
                                                                                                                                                                               ttGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTTCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGCGTGCACATTTTGAACCAGCAAACAGGAAAACCCGCTGCTGACGTGACAGTCACTCTTGAAAAGAAGGCGGATAACGGCTGGTTACAACTTAATACCGCCAAAACAGATAAGGATGGACGAAt                                                                                               <  2:403460/289‑1 (MQ=255)
                                                                                                                                                                                                  ttACCCTGGACGCTTTTTCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGCGTGCACATTTTGAACCAGCAAACAGGAAAACCCGCTGCTGACGTGACAGTCACTCTTGAAAAGAAGGCGGATAACGGc                                                                                                                                           >  2:1501489/1‑226 (MQ=255)
                                                                                                                                                                                                   tACCCTGGACGCTTTTTCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGCGTGCACATTTTGAACCAGCAAACAGGAAAACCCGCTGCTGACGTGACAGTCACTCTTGAAAAGAAGGCGGATAACGGCTGGTTACAACTTAATACCGCCAAAACAGATAAGGATGGACGAATTAAGGCACTGTGGCCCGAg                                                                            <  1:1692110/288‑1 (MQ=255)
                                                                                                                                                                                                    aCCCTGGACGCTTTTTCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGCGTGCACATTTTGAACCAGCAAACAGGAAAACCCGCTGCTGACGTGACAGTCACTCTTGAAAAGAAGGCGGATAACGGCTGGTTACAACTTAATACCGCCaaa                                                                                                                   <  2:148830/248‑1 (MQ=255)
                                                                                                                                                                                                    aCCCTGGACGCTTTTTCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGCGTGCACATTTTGAACCAGCAAACAGGAAAACCCGCTGCTGACGTGACAGTCACTCTTGAAAAGAAGGCGGATAACGGCTGGTTACAACTTAATACCGCCAAAACAGATAAGGATGGa                                                                                                    <  2:1474970/263‑1 (MQ=255)
                                                                                                                                                                                                    aCCCTGGACGCTTTTTCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGCGTGCACATTTTGAACCAGCAAACAGGAAAACCCGCTGCTGACGTGACAGTCACTCTTGAAAAGAAGGCGGATAACGGCTGGTTACAACTTAATACCGCCAAAACAGATAAGGATGGACGAATTAAGGCACTGTGGCCCGAGCa                                                                          >  2:1676327/1‑289 (MQ=255)
                                                                                                                                                                                                    aCCCTGGACGCTTTTTCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGCGTGCACATTTTGAACCAGCAAACAGGAAAACCCGCTGCTGACGTGACAGTCACTCTTGAAAAGAAGGCGGATAACGGCTGGTTACAACTTAATACCGCCAAAACAGATAAGGATGGACGAATTAAGGCACTGTGGCCCGAGCa                                                                          >  1:2091696/1‑289 (MQ=255)
                                                                                                                                                                                                    aCCCTGGACGCTTTTTCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGCGTGCACATTTTGAACCAGCAAACAGGAAAACCCGCTGCTGACGTGACAGTCACTCTTGAAAAGAAGGCGGATAACGGCTGGTTACAACTTAATACCGCCAAAACAGATAAGGATGGACGAATTAAGGCACTGTGGCCCGAGCa                                                                          <  1:807005/289‑1 (MQ=255)
                                                                                                                                                                                                    aCCCTGGACGCTTTTTCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGCGTGCACATTTTGAACCAGCAAACAGGAAAACCCGCTGCTGACGTGACAGTCACTCTTGAAAAGAAGGCGGATAACGGCTGGTTACAACTTAATACCGCCAAAACAGATAAGGATGGACGAATTAAGGCACTGTGGCCCGAGCa                                                                          >  1:2154972/1‑289 (MQ=255)
                                                                                                                                                                                                     cccTGGACGCTTTTTCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGCGTGCACATTTTGAACCAGCAAACAGGAAAACCAGCTGCTGACGTGACAGTCACTCTTGAAAAGAAGGCGGATAACGGCAGGTTACAACTTAATACCGCCAAAACAGATAAGGATGGACGAATTAAGGCACATTGGCCCGAACaa                                                                         >  2:2111414/1‑289 (MQ=255)
                                                                                                                                                                                                        tGGACGCTTTTTCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGCGTGCACATTTTGAACCAGCAAACAGGAAAACCCGCTGCTGACGTGACAGTCACTCTTGAAAAGAAGGCGGATAACGGCTGGTTACAACTTAATACCGCCAAAACAGATAAGGATGGACGAATTAAGGCACTGTGGCCCGAGCAAACt                                                                      <  2:774911/289‑1 (MQ=255)
                                                                                                                                                                                                          gACGCTTTTTCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGCGTGCACATTTTGAACCAGCAAACAGGAAAACCCGCTGCTGACGTGACAGTCACTCTTGAAAAGAAGGCGGATAACgg                                                                                                                                            >  2:230509/1‑217 (MQ=255)
                                                                                                                                                                                                          gACGCTTTTTCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGCGTGCACATTTTGAACCAGCAAACAGGAAAACCCGCTGCTGACGTGACAGTCACTCTTGAAAAGAAGGCGGATAACGGCTGGTTACAACTTAATACCGCCAAAACAGATAAGGATGGACGAATTAAGGCACTGTgg                                                                                  <  2:1029951/275‑1 (MQ=255)
                                                                                                                                                                                                          gACGCTTTTTCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGCGTGCACATTTTGAACCAGCAAACAGGAAAACCCGCTGCTGACGTGACAGTCACTCTTGAAAAGAAGGCGGATAACGGCTGGTTACAACTTAATACCGCCAAAACAGATAAGGATGGACGAATTAAGGCACTGTgg                                                                                  >  1:1029951/1‑275 (MQ=255)
                                                                                                                                                                                                           aCGCTTTTTCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGCGTGCACATTTTGAACCAGCAAACAGGAAAACCCGCTGCTGACGTGACAGTCACTCTTGAAAAGAAGGCGGATAACGGCTGGt                                                                                                                                       >  2:1999168/1‑221 (MQ=255)
                                                                                                                                                                                                           aCGCTTTTTCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGCGTGCACATTTTGAACCAGCAAACAGGAAAACCCGCTGCTGACGTGACAGTCACTCTTGAAAAGAAGGCGGATAACGGCTGGt                                                                                                                                       <  1:1999168/221‑1 (MQ=255)
                                                                                                                                                                                                           aCGCTTTTTCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGCGTGCACATTTTGAACCAGCAAACAGGAAAACCCGCTGCTGACGTGACAGTCACTCTTGAAAAGAAGGCGGATAACGGCTGGTTACAACTTAATACCGCCAAAACAGATAAGGATGGACGAATTAAGGCACTGTGGCCCGAGCAAACTGc                                                                    <  1:922188/288‑1 (MQ=255)
                                                                                                                                                                                                               tttttCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGCGTGCACATTTTGAACCAGCAAACAGGAAAACCCGCTGCTGACGTGACAGTCACTCTTGAAAAGAAGGCGGATAACGGCTGGTTa                                                                                                                                     <  1:863826/219‑1 (MQ=255)
                                                                                                                                                                                                               tttttCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGCGTGCACATTTTGAACCAGCAAACAGGAAAACCCGCTGCTGACGTGACAGTCACTCTTGAAAAGAAGGCGGATAACGGCTGGTTACAACTTAATACCGCCAAAACAGATAAGGATGGACGAATTAAGGCACTGTGGCCCGAGCAAACTGCAACt                                                                >  1:1839459/1‑288 (MQ=255)
                                                                                                                                                                                                               tttttCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGCGTGCACATTTTGAACCAGCAAACAGGAAAACCCGCTGCTGACGTGACAGTCACTCTTGAAAAGAAGGCGGATAACGGCTGGTTACAACTTAATACCGCCAAAACAGATAAGGATGGACGAATTAAGGCACTGTGGCCCGAGCAAACTGCAACTa                                                               <  1:1253876/289‑1 (MQ=255)
                                                                                                                                                                                                                         tCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGCGTGCACATTTTGAACCAGCAAACAGGAAAACCCGCTGCTGACGTGACAGTCa                                                                                                                                                                     <  1:1503726/177‑1 (MQ=255)
                                                                                                                                                                                                                         tCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGCGTGCACATTTTGAACCAGCAAACAGGAAAACCCGCTGCTGACGTGACAGTCACTCTTGAAAAGAAGGCGGATAACGGCTGGTTACAACTTAATACCGCCaaaa                                                                                                                  >  2:921755/1‑228 (MQ=255)
                                                                                                                                                                                                                         tCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGCGTGCACATTTTGAACCAGCAAACAGGAAAACCCGCTGCTGACGTGACAGTCACTCTTGAAAAGAAGGCGGATAACGGCTGGTTACAACTTAATACCGCCAAAACAGATAAGGATGGACGAATTAAGGCACTGTGGCCCGAGCAAACTGCAACTACGGGCGAtt                                                      >  2:1558662/1‑288 (MQ=255)
                                                                                                                                                                                                                         tCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGCGTGCACATTTTGAACCAGCAAACAGGAAAACCCGCTGCTGACGTGACAGTCACTCTTGAAAAGAAGGCGGATAACGGCTGGTTACAACTTAATACCGCCAAAACAGATAAGGATGGACGAATTAAGGCACTGTGGCCCGAGCAAACTGCAACTACGGGCGAtt                                                      >  1:1149417/1‑288 (MQ=255)
                                                                                                                                                                                                                         tCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGCGTGCACATTTTGAACCAGCAAACAGGAAAACCCGCTGCTGACGTGACAGTCACTCTTGAAAAGAAGGCGGATAACGGCTGGTTACAACTTAATACCGCCAAAACAAAAAAGGATGGACGAATAAAGGCCCTTGGGCCGGAGAAAACTGAAAATACGGGGCATTa                                                     >  2:730843/1‑289 (MQ=255)
                                                                                                                                                                                                                                aaCTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGCGTGCACATTTTGAACCAGCAAACAGGAAAACCCGCTGCTGACGTGACAGTCACTCTTGAAAAGAAGGCGGATAACGGCTTGTTACAACTTAATACCGCCAAAACAGATAAGGATGGACGAATTAAGGCACTGTGGCCCGAGCAAACTGCAACTACGGGCGATTACCGTGTc                                              <  1:1478497/289‑1 (MQ=255)
                                                                                                                                                                                                                                     aTTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGCGTGCACATTTTGAACCAGCAAACAGGAAAACCCGCTGCTGACGTGACAGTCACTCTTGAAAAGAAGGCGGATAACGGCTGGTTACAACTTAATACCGCCAAAACAGATAAGGATGGACGAATTAAGGCACTGTGGCCCGAGCAAACTGCAACTACGGGCGATTACCGTGTCGTAtt                                         >  2:932617/1‑289 (MQ=255)
                                                                                                                                                                                                                                     aTTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGCGTGCACATTTTGAACCAGCAAACAGGAAAACCCGCTGCTGACGTGACAGTCACTCTTGAAAAGAAGGCGGATAACGGCTGGTTACAACTTAATACCGCCAAAACAGATAAGGATGGACGAATTAAGGCACTGTGGCCCGAGCAAACTGCAACTACGGGCGATTACCGTGTCGTAtt                                         >  1:307926/1‑289 (MQ=255)
                                                                                                                                                                                                                                            tgcaaaGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTATCGTGCACATTTTGAACAAGCAAACAGGAAAACCCGCTTCTGACGTGACAGTCACTCTTGAAAAGAAGGCGGATAACGGCTGGTTACAACTTAATACCGCCAAAACAGATAAGGATGGACGAATTAAGGCACTGTGGCCCGAGCAAACTGCAACTACGGGCGATTACCGTGTCGTATTTAAAAcc                                  <  1:1496911/285‑1 (MQ=255)
                                                                                                                                                                                                                                             gACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGCGTGCACATTTTGAACCAGCAAACAGGAAAACCCGCTGCTGACGTGACAGTCACTCTTGAAAAGAAGGCGGATAACGGCTGGTTACAACTTAATACCGCCAAAACAGATAAGGATGGACGAATTAAGGCACTGTGGCCCGAGCAAACTGCAACTACGGGCGATTACCGTGTCGTATTTAAAACCg                                 <  2:1296641/289‑1 (MQ=255)
                                                                                                                                                                                                                                                   gATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGCGTGCACATTTTGAACCAGCAAACAGGAAAACCCGCTGCTGACGTGACAGTCACTCTTGAAAAGAAGGCGGATAACGGCTGGTTACAACTTAATACCGCCAAAACAGATAAGGATGGACGAATTAAGGCACTGTGGCCCGAGCAAACTGCAACTACGGGCGATTACCGTGTCGTATTTAAAACCGGGGACt                           >  2:522731/1‑289 (MQ=255)
                                                                                                                                                                                                                                                       taAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGCGTGCACATTTTGAACCAGCAAACAGGAAAACCCGCTGCTGACGTGACAGTCACTCTTGAAAAGAAGGCGGATAACGGCTGGTTACAACTTAATACCGCCAAAACAGATAAGGATGGACGAATTAAGGCACTGTGGCCCGAGCAAACTGCAACTACGGGCGATTACCGTGTc                                              <  1:2049369/266‑1 (MQ=255)
                                                                                                                                                                                                                                                       taAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGCGTGCACATTTTGAACCAGCAAACAGGAAAACCCGCTGCTGACGTGACAGTCACTCTTGAAAAGAAGGCGGATAACGGCTGGTTACAACTTAATACCGCCAAAACAGATAAGGATGGACGAATTAAGGCACTGTGGCCCGAGCAAACTGCAACTACGGGCGATTACCGTGTc                                              >  2:2049369/1‑266 (MQ=255)
                                                                                                                                                                                                                                                         aaCATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGCGTGCACATTTTGAACCAGCAAACAGGAAAACCCGCTGCTGACGTGACAGTCACTCTTGAAAAGAAGGCGGATAACGGCTGGTTACAACTTAATACCGCCAAAACAGATAAGGATGGACGAATTAAg                                                                                           >  2:630210/1‑219 (MQ=255)
                                                                                                                                                                                                                                                         aaCATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGCGTGCACATTTTGAACCAGCAAACAGGAAAACCCGCTGCTGACGTGACAGTCACTCTTGAAAAGAAGGCGGATAACGGCTGGTTACAACTTAATACCGCCAAAACAGATAAGGATGGACGAATTAAGGCACTGTGGCCCGAGCAAACTGCAACTACGGGCGATTACCGTGTCGTATTTAAAACCGGGGACTATTTCa                     <  1:1535896/289‑1 (MQ=255)
                                                                                                                                                                                                                                                             tGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCATAACAAAACATTCTTAGCGTGCACATTTTGAACCAGCAAACAGGAAAACCCGCTGCTGACGTGACAGTCACTCTTGAAAAGAAGGCGGATAACGGCTGGTTACAACTTAATACCGCCAAAACAGATAAGGATGGACGAATTAAGGCACTGTGGCCCGAGCAAACTGCAACTACGGGCGATTACCGTGTCGTATTTAAAACCGGGGACTATTTCAAGaa                 >  2:673966/1‑289 (MQ=255)
                                                                                                                                                                                                                                                             tGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGCGTGCACATTTTGAACCAGCAAACAGGAAAACCCGCTGCTGACGTGACAGTCACTCTTGAAAAGAAGGCGGATAACGGCTGGTTACAACTTAATACCGCCa                                                                                                                     <  1:121758/189‑1 (MQ=255)
                                                                                                                                                                                                                                                             tGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGCGTGCACATTTTGAACCAGCAAACAGGAAAACCCGCTGCTGACGTGACAGTCACTCTTGAAAAGAAGGCGGATAACGGCTGGTTACAACTTAATACCGCCa                                                                                                                     >  2:121758/1‑189 (MQ=255)
                                                                                                                                                                                                                                                             tGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGCGTGCACATTTTGAACCAGCAAACAGGAAAACCCGCTGCTGACGTGACAGTCACTCTTGAAAAGAAGGCGGATAACGGCTGGTTACAACTTAATACCGCCAAAACAGATAAGGATGGACGAATTAAGGCACTGTGGCCCGAGCAAACTGCAACTACGGGCGATTACCGTGTCGTATTTAAAACCGGGGACTATTTCAAGaa                 >  1:417853/1‑289 (MQ=255)
                                                                                                                                                                                                                                                             tGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGCGTGCACATTTTGAACCAGCAAACAGGAAAACCCGCTGCTGACGTGACAGTCACTCTTGAAAAGAAGGCGGATAACGGCTGGTTACAACTTAATACCGCCAAAACAGATAAGGATGGACGAATTAAGGCACTGTGGCCCGAGCAAACTGCAACTACGGGCGATTACCGTGTCGTATTTAAAACCGGGGACTATTTCAAGaa                 >  1:1732099/1‑289 (MQ=255)
                                                                                                                                                                                                                                                             tGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATCCTTAGCGTGCACATTTTGAACCAGCAAACAGGAAAACCCGCTGCTGACGTGACAGTCACTCTTGAAAAGAAGGCGGATAACGGCTGGTTACAACTTAATACCGCCAAAACAGATAAGGATGGACGAATTAAGGCACTGTGGCCCGAGCAAACTGCAACTACGGGCGATTAcc                                                   <  1:245954/255‑1 (MQ=255)
                                                                                                                                                                                                                                                             tGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATCCTTAGCGTGCACATTTTGAACCAGCAAACAGGAAAACCCGCTGCTGACGTGACAGTCACTCTTGAAAAGAAGGCGGATAACGGCTGGTCACAACTTAATACCGCCAAAACAGATAAGGATGGACGAATTAAGGCACTGTGGCCCGAGCAAACTGCAACTACGGGCGATTAcc                                                   >  2:245954/1‑255 (MQ=255)
                                                                                                                                                                                                                                                              gTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACTACAAAACATTCTTAGCGTGCACATTTTGAACCAGCAAACAGGAAAACCCGCTGCTGACGTGACAGTCACTCTTGAAAAGAAGGCGGATAACGGCTGGTTACAACTTAATACCGCCAAAACAGATAAGGATGGACGAATTAAGGCACTGTGGCCCGAGCAAACTGCAACTACGGGCGATTACCGTGTCGTATTTAAAACCGGGGACTATTTCAAGaaa                >  2:505801/1‑289 (MQ=255)
                                                                                                                                                                                                                                                              gTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGCGTGCACATTTTGAACCAGCAAACAGGAAAACCCGCTGCTGACGTGACAGTCACTCTTGAAAAGAAGGCGGATAACGGCTGGTTACAACTTAATACCGCCAAAACAGATAAGGATGGACGAATTAAGGCACTGTGGCCCTAGCAAACt                                                                      >  1:193175/1‑235 (MQ=255)
                                                                                                                                                                                                                                                              gTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGCGTGCACATTTTGAACCAGCAAACAGGAAAACCCGCTGCTGACGTGACAGTCACTCTTGAAAAGAAGGCGGATAACGGCTGGTTACAACTTAATACCGCCAAAACAGATAAGGATGGACGAATTAAGGCACTGTGGCCCGAGCAAACTGCAACTACg                                                             <  2:571553/244‑1 (MQ=255)
                                                                                                                                                                                                                                                              gTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGCGTGCACATTTTGAACCAGCAAACAGGAAAACCCGCTGCTGACGTGACAGTCACTCTTGAAAAGAAGGCGGATAACGGCTGGTTACAACTTAATACCGCCAAAACAGATAAGGATGGACGAATTAAGGCACTGTGGCCCGAGCAAACTGCAACTACg                                                             >  1:571553/1‑244 (MQ=255)
                                                                                                                                                                                                                                                                         aTTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGCGTGCACATTTTGAACCAGCAAACAGGAAAACCCGCTGCTGACGTGACAGTCACTCTTGAAAAGAAGGCGGATAACGGCTGGTTACAACTTAATACCGCCAAAACAGATAAGGATGGACGAATTa                                                                                             <  1:1115197/201‑1 (MQ=255)
                                                                                                                                                                                                                                                                         aTTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGCGTGCACATTTTGAACCAGCAAACAGGAAAACCCGCTGCTGACGTGACAGTCACTCTTGAAAAGAAGGCGGATAACGGCTGGTTACAACTTAATACCGCCAAAACAGATAAGGATGGACGAATTa                                                                                             >  2:1115197/1‑201 (MQ=255)
                                                                                                                                                                                                                                                                            tAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGCGTGCACATTTTGAACCAGCAAACAGGAAAACCCGCTGCTGACGTGACAGTCACTCTTGAAAAGAAGGCGGATAACGGCTGGTTACAACTTAATACCGCCAAAACAGATAAGGATGGACGAATTAAGGCACTGTGGCCCGAGCAAACTGCAACTACGGGCGATTACCGTGTCGTATTTAAAACCGGGGACTATTTCAAGAAACAAAATCTTGAAAg  <  1:361569/289‑1 (MQ=255)
                                                                                                                                                                                                                                                                                    |||                                                                                                                                                                                                                                                                                      
CGCAAGATAAAGCCCATCTCTGCCATCAGAAACGGCATCGATGACATAACCCGCTTCGGAAAGCCCCTGCGTTACCCATTCCTGGGTCCTTTGATTATCTTCAATAAGTAGAATCTTCATGAAAATAATATGCCATAAATCATATGTTATAGAAACAGCCTGGTTCATTACAAAATTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTTCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCAGCGTAGCAACGGCAGCATTTAGTTTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGCGTGCACATTTTGAACCAGCAAACAGGAAAACCCGCTGCTGACGTGACAGTCACTCTTGAAAAGAAGGCGGATAACGGCTGGTTACAACTTAATACCGCCAAAACAGATAAGGATGGACGAATTAAGGCACTGTGGCCCGAGCAAACTGCAACTACGGGCGATTACCGTGTCGTATTTAAAACCGGGGACTATTTCAAGAAACAAAATCTTGAAAG  >  CP042583/1676227‑1676783

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A