Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A6 F210 I1 R1 4928 340.1 5480506 96.9% 5310610 252.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA CP042583 1,676,503 3 bp→TCG intergenic (–/–) – / – –/–

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0425831,676,5030AT100.0% 617.6 / NA 258intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base T (140/118);  total (140/118)
*CP0425831,676,5040GC99.6% 612.7 / NA 258intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base G (0/0);  major base C (140/117);  minor base A (0/1);  total (140/118)
Fisher's exact test for biased strand distribution p-value = 4.57e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*CP0425831,676,5050CG99.6% 612.3 / NA 258intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base C (0/1);  new base G (140/117);  total (140/118)
Fisher's exact test for biased strand distribution p-value = 4.57e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 259 total aligned reads displayed.

CGCAAGATAAAGCCCATCTCTGCCATCAGAAACGGCATCGATGACATAACCCGCTTCGGAAAGCCCCTGCGTTACCCATTCCTGGGTCCTTTGATTATCTTCAATAAGTAGAATCTTCATGAAAATAATATGCCATAAATCATATGTTATAGAAACAGCCTGGTTCATTACAAAATTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTTCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCAGCGTAGCAACGGCAGCATTTAGTTTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGCGTGCACATTTTGAACCAGCAAACAGGAAAACCCGCTGCTGACGTGACAGTCACTCTTGAAAAGAAGGCGGATAACGGCTGGTTACAACTTAATACCGCCAAAACAGATAAGGATGGACGAATTAAGGCACTGTGGCCCGAGCAAA‑CTGCAACTACGGGCGATTACCGTGTCGTATTTAAAACCGGGGACTATTTCAAGAAACAAAATCTTGAAAGTTT  >  CP042583/1676227‑1676786
                                                                                                                                                                                                                                                                                    |||                                                                                                                                                                                                                                                                                          
                    tGCCATCAGAAACGGCATCGATGACATAACCCGCTTCGGAAAGCCCCTGCGTTACCCATTCCTGGGTCCTTTGATTATCTTCAATAAGTAGAATCTTCATGAAAATAATATGCCATAAATCATATGTTATAGAAACAGCCTGGTTCATTACAAAATTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTTCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACcttct                                                                                                                                                                                                                                                              <  2:237410/289‑1 (MQ=255)
                         tCAGAAACGGCATCGATGACATAACCCGCTTCGGAAAGCCCCTGCGTTACCCATTCCTGGGTCCTTTGATTATCTTCAATAAGTAGAATCTTCATGAAAATAATATGCCATAAATCATATGTTATAGAAACAGCCTGGTTCATTACAAAATTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTTCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGt                                                                                                                                                                                                                                                         <  1:648958/289‑1 (MQ=255)
                                     tCGATGACATAACCCGCTTCGGAAAGCCCCTGCGTTACCCATTCCTGGGTCCTTTGATTATCTTCAATAAGTAGAATCTTCATGAAAATAATATGCCATAAATCATATGTTATAGAAACAGCCTGGTTCATTACAAAATTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTTCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGcaca                                                                                                                                                                                                                                             <  2:564387/289‑1 (MQ=255)
                                           aCATAACCCGCTTCGGAAAGCCCCTGCGTTACCCATTCCTGGGTCCTTTGATTATCTTCAATAAGTAGAATCTTCATGAAAATAATATGCCATAAATCATATGTTATAGAAACAGCCTGGTTCATTACAAAATTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTTCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACaaaa                                                                                                                                                                                                                                       <  1:2693153/289‑1 (MQ=255)
                                                     cTTCGGAAAGCCCCTGCGTTACCCATTCCTGGGTCCTTTGATTATCTTCAATAAGTAGAATCTTCATGAAAATAATATGCCATAAATCATATGTTATAGAAACAGCCTGGTTCATTACAAAATTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTTCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGc                                                                                                                                                                                                                             >  1:381008/1‑289 (MQ=255)
                                                      ttCGGAAAGCCCCTGCGTTACCCATTCCTGGGTCCTTTGATTATCTTCAATAAGTAGAATCTTCATGAAAATAATATGCCATAAATCATATGTTATAGAAACAGCCTGGTTCATTACAAAATTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTTCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGcaca                                                                                                                                                                                                                                             <  1:526281/272‑1 (MQ=255)
                                                      ttCGGAAAGCCCCTGCGTTACCCATTCCTGGGTCCTTTGATTATCTTCAATAAGTAGAATCTTCATGAAAATAATATGCCATAAATCATATGTTATAGAAACAGCCTGGTTCATTACAAAATTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTTCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGcaca                                                                                                                                                                                                                                             >  2:526281/1‑272 (MQ=255)
                                                           aaaGCCCCTGCGTTACCCATTCCTGGGTCCTTTGATTATCTTCAATAAGTAGAATCTTCATGAAAATAATATGCCATAAATCATATGTTATAGAAACAGCCTGGTTCATTACAAAATTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTTCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGCGTGca                                                                                                                                                                                                                        <  1:1362835/288‑1 (MQ=255)
                                                                 ccTGCGTTACCCATTCCTGGGTCCTTTGATTATCTTCAATAAGTAGAATCTTCATGAAAATAATATGCCATAAATCATATGTTATAGAAACAGCCTGGTTCATTACAAAATTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTTCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGCGTGCACATTTTg                                                                                                                                                                                                                 <  2:794329/289‑1 (MQ=255)
                                                                          cccATTCCTGGGTCCTTTGATTATCTTCAATAAGTAGAATCTTCATGAAAATAATATGCCATAAATCATATGTTATAGAAACAGCCTGGTTCATTACAAAATTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTTCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGCGTGCACATTTTGAACCAGCaa                                                                                                                                                                                                        >  2:1940987/1‑289 (MQ=255)
                                                                           ccATTCCTGGGTCCTTTGATTATCTTCAATAAGTAGAATCTTCATGAAAATAATATGCCATAAATCATATGTTATAGAAACAGCCTGGTTCATTACAAAATTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTTCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGCGTGCACATTTTGAACCAGCaaa                                                                                                                                                                                                       <  1:974429/289‑1 (MQ=255)
                                                                               tCCTGGGTCCTTTGATTATCTTCAATAAGTAGAATCTTCATGAAAATAATATGCCATAAATCATATGTTATAGAAACAGCCTGGTTCATTACAAAATTGTAATGCTGCTGTAAGGTTACCCTAGACGCTTTTTCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTATCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCAGCACAACAAAACATTCTTACAGTGTACATTTTGAACCAGCAAACAgg                                                                                                                                                                                                   >  2:101413/1‑289 (MQ=255)
                                                                                         tttGATTATCTTCAATAAGTAGAATCTTCATGAAAATAATATGCCATAAATCATATGTTATAGAAACAGCCTGGTTCATTACAAAATTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTTCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGCGTGCACATTTTGAACCAGCAAACAGGAAAAccc                                                                                                                                                                                            >  1:834407/1‑286 (MQ=255)
                                                                                         tttGATTATCTTCAATAAGTAGAATCTTCATGAAAATAATATGCCATAAATCATATGTTATAGAAACAGCCTGGTTCATTACAAAATTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTTCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGCGTGCACATTTTGAACCAGCAAACAGGAAAAccc                                                                                                                                                                                            >  2:1740935/1‑286 (MQ=255)
                                                                                         tttGATTATCTTCAATAAGTAGAATCTTCATGAAAATAATATGCCATAAATCATATGTTATAGAAACAGCCTGGTTCATTACAAAATTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTTCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGCGTGCACATTTTGAACCAGCAAACAGGAAAAccc                                                                                                                                                                                            >  2:453690/1‑286 (MQ=255)
                                                                                         tttGATTATCTTCAATAAGTAGAATCTTCATGAAAATAATATGCCATAAATCATATGTTATAGAAACAGCCTGGTTCATTACAAAATTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTTCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGCGTGCACATTTTGAACCAGCAAACAGGAAAAccc                                                                                                                                                                                            >  2:1146154/1‑286 (MQ=255)
                                                                                         tttGATTATCTTCAATAAGTAGAATCTTCATGAAAATAATATGCCATAAATCATATGTTATAGAAACAGCCTGGTTCATTACAAAATTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTTCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGCGTGCACATTTTGAACCAGCAAACAGGAAAACCCgct                                                                                                                                                                                         <  2:381008/289‑1 (MQ=255)
                                                                                           tGATTATCTTCAATAAGTAGAATCTTCATGAAAATAATATGCCATAAATCATATGTTATAGAAACAGCCTGGTTCATTACAAAATTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTTCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGCGTGCACATTTTGAACCAGCAAACAGGAAAACCCgctgc                                                                                                                                                                                       <  2:1809486/289‑1 (MQ=255)
                                                                                                  cTTCAATAAGTAGAATCTTCATGAAAATAATATGCCATAAATCATATGTTATAGAAACAGCCTGGTTCATTACAAAATTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTTCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGCGTGCACATTTTGAACCAGCAAACAGGAAAACCCGCTGCTGACGTg                                                                                                                                                                                >  1:1484991/1‑289 (MQ=255)
                                                                                                       aTAAGTAGAATCTTCATGAAAATAATATGCCATAAATCATATGTTATAGAAACAGCCTGGTTCATTACAAAATTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTTCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACcttct                                                                                                                                                                                                                                                              <  2:1539056/206‑1 (MQ=255)
                                                                                                       aTAAGTAGAATCTTCATGAAAATAATATGCCATAAATCATATGTTATAGAAACAGCCTGGTTCATTACAAAATTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTTCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACcttct                                                                                                                                                                                                                                                              >  1:1539056/1‑206 (MQ=255)
                                                                                                            tAGAATCTTCATGAAAATAATATGCCATAAATCATATGTTATAGAAACAGCCTGGTTCATTACAAAATTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTTCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGCGTGCACATTTTGAACCAGCAAACAGGAAAACCCGCTGCTGACGTGACAGTCaa                                                                                                                                                                        >  2:466284/1‑286 (MQ=255)
                                                                                                                     cATGAAAATAATATGCCATAAATCATATGTTATAGAAACAGCCTGGTTCATTACAAAATTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTTCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGCGTGCACATTTTGAACCAGCAAACAGGAAAACCCGCTGCTGACGTGACAGTCACTCTTGAAaaga                                                                                                                                                             >  1:1847019/1‑289 (MQ=255)
                                                                                                                     cATGAAAATAATATGCCATAAATCATATGTTATAGAAACAGCCTGGTTCATTACAAAATTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTTCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGCGTGCACATTTTGAACCAGCAAACAGGAAAACCCGCTGCTGACGTGACAGTCACTCTTGAAaaga                                                                                                                                                             <  1:2634342/289‑1 (MQ=255)
                                                                                                                      aTGAAAATAATATGCCATAAATCATATGTTATAGAAACAGCCTGGTTCATTACAAAATTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTTCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTAATCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTTTTAGCGTGCACATTTTGAATCAGCAAAAAGGACAACCCGCTGCTGGCGTGACAGTCACTCCTGaacaaaa                                                                                                                                                            >  2:1108744/1‑284 (MQ=255)
                                                                                                                        gAAAATAATATGCCATAAATCATATGTTATAGAAACAGCCTGGTTCATTACAAAATTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTTCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGCGTGCACATTTTGAACCAGCAAACAGGAAAACCCGCTGCTGACGTGACAGTCACTCTTGAAAAGAAgg                                                                                                                                                          <  1:2028991/289‑1 (MQ=255)
                                                                                                                                  tGCCATAAATCATATGTTATAGAAACAGCCTGGTTCATTACAAAATTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTTCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGCGTGCACATTTTGAACCAGCAAACAGGAAAACCCGCTGCTGACGTGACAGTCACTCTTGAAAAGAAGGCGGATAACgg                                                                                                                                                <  1:603404/289‑1 (MQ=255)
                                                                                                                                  tGCAATAAAACATATGTTATAGAAACAGCTGGGTTCATTACAAAATTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTTCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGCGTGCACATTTTGAACCAGCAAACAGGAAAACCCGCTGCTGACGTGACAGTCACTCTTGAAAAGAAGGCGGATAACgg                                                                                                                                                <  2:2148124/289‑1 (MQ=255)
                                                                                                                                     cATAAATCATATGTTATAGAAACAGCCTGGTTCATTACAAAATTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTTCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGCGTGCACATTTTGAACCAGCAAACAGGAAAACCCg                                                                                                                                                                                           >  2:1947091/1‑243 (MQ=255)
                                                                                                                                     cATAAATCATATGTTATAGAAACAGCCTGGTTCATTACAAAATTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTTCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGCGTGCACATTTTGAACCAGCAAACAGGAAAACCCg                                                                                                                                                                                           <  1:1947091/243‑1 (MQ=255)
                                                                                                                                     cATAAATCATATGTTATAGAAACAGCCTGGTTCATTACAAAATTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTTCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGCGTGCACATTTTGAACCAGCAAACAGGAAAACCCGCTGCTGACGTGACAGTCACTCTTGAAAAGAAGCAGGATAACGGCTg                                                                                                                                             >  2:657186/1‑289 (MQ=255)
                                                                                                                                        aaagcctatGTTATAGAAAAAGCCTGGTTCATTACAAAATTGTAATGCTGCGGTAAGGTTACCCTGGACTC‑TTTTCGCTATCCTCAAAACTCATTCACATGTCAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTATCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAGCAAAACAGTCTTAGCGTGCACATTTTGAACCAGCAAACAGGAAAACCCGCTGCTGACGTGACAGTCACTCTTGAAAAGAAGGCGGATAACGGCTGGTTa                                                                                                                                         <  2:2202668/283‑1 (MQ=255)
                                                                                                                                         actCATATGTTATAGAAACAGCCTGGTTCATTACAAAATTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTTCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGCGTGCACATTTTGAACCAGCAAACAGGAAAACCCGCTGCTGACGTGACAGTCACTCTTGAAAAGAAGGCGGATAACGGCTGGTTa                                                                                                                                         <  2:2483347/287‑1 (MQ=255)
                                                                                                                                         aaTCATATGTTATAGAAACAGCCTGGTTCATTACAAAATTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTTCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGCGTGCACATTTTGAACCAGCAAACAGGAAAACCCGCTGCTGACGTGACAGTCACTCTTGAAAAGAAGGCGGATAACGGCTGGTTa                                                                                                                                         <  2:2305081/289‑1 (MQ=255)
                                                                                                                                              tatGTTATAGAAACAGCCTGGTTCATTACAAAATTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTTCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGCGTGCACATTTTGAACCAGCAAACAGGAAAACCCGCTGCTGACGTGACAGTCACTCTTGAAAAGAAGGCGGATAACGGCTGGTTACAACt                                                                                                                                    >  2:2170228/1‑289 (MQ=255)
                                                                                                                                               atGTTATAGAAACAGCCTGGTTCATTACAAAATTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTTCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGCGTGCACATTTTGAACCAGCAAACAGGAAAACCCGCTGCTGACGTGACAGTCACTCTTGAAAAGAAGGCGGATAACGGCTGGTTACAACtt                                                                                                                                   >  1:1894235/1‑289 (MQ=255)
                                                                                                                                                    ataGAAACAGCCTGGTTCATTACAAAATTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTTCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGCGTGCACATTTTGAACCAGCAAACAGGAAAACCCGCTGCTGACGTGACAGTCACTCTTGAAAAGAAGGCGGATAACGGCTGGTTa                                                                                                                                         >  1:1030569/1‑278 (MQ=255)
                                                                                                                                                     taGAAACAGCCTGGTTCATTACAAAATTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTTCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCTGCAcaacaa                                                                                                                                                                                                                                         >  2:331068/1‑181 (MQ=255)
                                                                                                                                                     taGAAACAGCCTGGTTCATTACAAAATTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTTCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGCGTGCACATTTTGAACCAGCAAACAGGAAAACCCGCTGCTGACGTGACAGTCACTCTTGAAAAGAAGGCGGATAACgg                                                                                                                                                <  1:1163484/270‑1 (MQ=255)
                                                                                                                                                     taGAAACAGCCTGGTTCATTACAAAATTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTTCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGCGTGCACATTTTGAACCAGCAAACAGGAAAACCCGCTGCTGACGTGACAGTCACTCTTGAAAAGAAGGCGGATAACgg                                                                                                                                                >  2:1163484/1‑270 (MQ=255)
                                                                                                                                                        aaaCAGCCTGGTTCATTACAAAATTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTTCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGCGTGCACATTTTGAACCAGCAAACAGGAAAACCCGCTGCTGACGTGACAGTCACTCTTGAAAAGAAGGCGGATAACGGCTGGTTACAACTTAATACCGcc                                                                                                                          >  1:298698/1‑289 (MQ=255)
                                                                                                                                                            aGCCTGGTTCATTACAAAATTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTTCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACg                                                                                                                                                                                                                                                                                   <  2:1470093/132‑1 (MQ=255)
                                                                                                                                                             gCCTGGTTCATTACAAAATTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTTCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGCGTGCACATTTTGAACCAGCAAACAGGAAAACCCGCTGCTGACGTGACAGTCACTCTTGAAAAGAAGGCGGATAACGGCTGGTTACAACTTAATACCGc                                                                                                                           >  1:2572339/1‑283 (MQ=255)
                                                                                                                                                             gCCTGGTTCATTACAAAATTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTTCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGCGTGCACATTTTGAACCAGCAAACAGGAAAACCCGCTGCTGACGTGACAGTCACTCTTGAAAAGAAGGCGGATAACGGCTGGTTACAACTTAATACCGc                                                                                                                           <  2:2572339/283‑1 (MQ=255)
                                                                                                                                                              ccTGGTTCATTACAAAATTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTTCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGCGTGCACATTTTGAACCAGCAAACAGGAAAACCCGCTGCTGACGTGACAGTCACTCTTGAAaagaag                                                                                                                                                           <  1:180615/250‑1 (MQ=255)
                                                                                                                                                              ccTGGTTCATTACAAAATTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTTCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGCGTGCACATTTTGAACCAGCAAACAGGAAAACCCGCTGCTGACGTGACAGTCACTCTTGAAAAGAAGGCGGATAACgg                                                                                                                                                <  2:1627314/261‑1 (MQ=255)
                                                                                                                                                               cTGGTTCATTACAAAATTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTTCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGCGTGCACATTTTGAACCAGCAAACAGGAAAACCCGCTGCTGACGTGACAGTCACTCTTGAAAAGAAGGCGGATAACGGCTGGTTACAACTTAATACCGCCaaa                                                                                                                       <  1:2170228/285‑1 (MQ=255)
                                                                                                                                                                 ggTTCATTACAAAATTGTAATGCTTGTGTAAGATTAAACTGGACGCTTTTTCGCTATCCTTAATACTCATTCAAACGACAAAGATATAAACATGTTAAAGCGTTATTTAGTACTCTCCGTAGCAACGGCAGCATGTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGCGTGCACATTTTGGACCAGCAAACAGGAAAACCCGCTGCTGACGTGACAGTCACTCTTGAAAAGAAGGCGGATAACGGCTGGTTACAACTTAGTACCGCCAAAACAGa                                                                                                                  <  2:2134102/288‑1 (MQ=255)
                                                                                                                                                                   ttCATTACAAAATTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTTCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGCGTGCACATTTTGAACCAGCAAACAGGAAAACCCGCTGCTGACGTGACAGTCACTCTTGAAAAGAAGGCAGATAACGGCTGGTTACAACTTAATACCGCCAAAACAggata                                                                                                               >  2:508648/1‑285 (MQ=255)
                                                                                                                                                                     cATTACAAAATTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTTCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGCGTGCACATTTTGAACCAGCAAACAGGAAAACCCGCTGCTGACGTGACAGTCACTCTTGAAAAGAAGGAGGATAACGGCTGGTTACAACTTAATACCGCCAAAACAGATAAgg                                                                                                             <  1:1315521/289‑1 (MQ=255)
                                                                                                                                                                        tACAAAATTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTTCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGCGTGCACATTTTGAACCAGCAAACAGGAAAACCCGCTGCTGACGTGACAGTCACTCTTGAAAAGAAGGCGGATAACGGCTGGTTACAACTTAATACCGCCAAAACAGATAAGGATg                                                                                                          >  1:577517/1‑289 (MQ=255)
                                                                                                                                                                        tACAAAATTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTTCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGCGTGCACATTTTGAACCAGCAAACAGGAAAACCCGCTGCTGACGTGACAGTCACTCTTGAAAAGAAGGCGGATAACGGCTGGTTACAACTTAATACCGCCAAAACAGATAAGGATg                                                                                                          >  2:2522553/1‑289 (MQ=255)
                                                                                                                                                                            aaaTTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTTCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGCGTGCACATTTTGAACCAGCAAACAGGAAAACCCGCTGCTGACGTGACAGTCACTCTTGAAAAGAAGGCGGATAACGGCTGGTTACAACTTAATACCGCCAAAACAGATAAGGATGGACg                                                                                                      <  2:834407/289‑1 (MQ=255)
                                                                                                                                                                            aaaTTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTTCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGCGTGCACATTTTGAACCAGCAAACAGGAAAACCCGCTGCTGACGTGACAGTCACTCTTGAAAAGAAGGCGGATAACGGCTGGTTACAACTTAATACCGCCAAAACAGATAAGGATGGACg                                                                                                      <  2:936528/289‑1 (MQ=255)
                                                                                                                                                                                   aaTGCTGCATTAAGGTTACCCTGGAAGCTTTTTCGCTATACGCAAAACTCATTCCAATGAAAAGGATATAAACATGTTAAAGCGTTATTTATTACTCTCGGTAGCAACGGAAGAATTTTCATTACCTGCTATGGTTAATGCCGCACAACAAAACATTCTTAGCGTGCACATTTTGAACCAGCAAACAGGAAAACCCGCTGCTGACGTGACAGTCACTCTTGAAAAGAAGGCGGATAACGGCTGGTTACAACTTAATACCGCCAAAACAGATAAGGATGGACGAATTAAg                                                                                               <  2:2661963/289‑1 (MQ=255)
                                                                                                                                                                                              aaGGTTACCCTGGACGCTTTTTCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGCGTGCACATTTTGAACCAGCAAACAGGAAAACCCGCTGCTGACGTGACAGTCACTCTTGAAAAGAAGGCGGATAACGGCTGGTTACAACTTAATACCGCCAAAACAGATAAGGATGGACGAATTAAGGCACTGTGGcc                                                                                    <  1:85516/289‑1 (MQ=255)
                                                                                                                                                                                                    acacttgatgcactttAGCTATCCTCACAACTCATTCACAGGACAAGGATATAAACATGTTAAAGCGTTATTTCGGACTCTCGGTAGCCACGGCAGCATTTTCATTACCTTCTTTGGTTAATGACGCACAACAAAACATTCTTAGCGTGCACATTTTGAACCAGCAAACAGGAAAACCCGCTGCTGACGTGACAGTCACTCTTGAAAAGCAGGCGGATAACGGCTGGTTACAACATAATACCGCCAAAACAGATAAGGATGGACGAAATAAGGCAATGTGGCCCGAGCa                                                                              <  2:2115676/276‑1 (MQ=255)
                                                                                                                                                                                                    aCCCTGGACGCTTTTTCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGCGTGCACATTTTGAACCAGCAAACAGGAAAACCCGCTGCTGACGTGACAGTCACTCTTGAAAAGAAGGCGGATAACGGCTGGTTa                                                                                                                                         <  1:82890/230‑1 (MQ=255)
                                                                                                                                                                                                    aCCCTGGACGCTTTTTCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGCGTGCACATTTTGAACCAGCAAACAGGAAAACCCGCTGCTGACGTGACAGTCACTCTTGAAAAGAAGGCGGATAACGGCTGGTTACAACTTAATAc                                                                                                                              >  2:1043081/1‑241 (MQ=255)
                                                                                                                                                                                                    aCCCTGGACGCTTTTTCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGCGTGCACATTTTGAACCAGCAAACAGGAAAACCCGCTGCTGACGTGACAGTCACTCTTGAAAAGAAGGCGGATAACGGCTGGTTACAACTTAATACCGCCAAAACAGATAAGGATGGACGAATTAAGGCACTGTGGCCCGAGCa                                                                              >  2:2314786/1‑289 (MQ=255)
                                                                                                                                                                                                    aCCCTGGACGCTTTTTCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGCGTGCACATTTTGAACCAGCAAACAGGAAAACCCGCTGCTGACGTGACAGTCACTCTTGAAAAGAAGGCGGATAACGGCTGGTTACAACTTAATACCGCCAAAACAGATAAGGATGGACGAATTAAGGCACTGTGGCCCGAGCa                                                                              >  1:421721/1‑289 (MQ=255)
                                                                                                                                                                                                    aCCCTGGACGCTTTTTCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGCGTGCACATTTTGAACCAGCAAACAGGAAAACCCGCTGCTGACGTGACAGTCACTCTTGAAAAGAAGGCGGATAACGGCTGGTTACAACTTAATACCGCCAAAACAGATAAGGATGGACGAATTAAGGCACTGTGGCCCGAGCa                                                                              >  1:442552/1‑289 (MQ=255)
                                                                                                                                                                                                         ggACGCTTTTTCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGCGTGCACATTTTGAACCAGCAAACAGGAAAACCCGCTGCTGACGTGACAGTCACTCTTGAAAAGAAGGCGGATAACGGCTGGTTACAACTTAATACCGCCAAAACAGATAAGGATGGACGAATTAAGGCACTGTGGCCCGAGCAAA‑Ct                                                                         >  2:1819209/1‑288 (MQ=255)
                                                                                                                                                                                                          gACGCTTTTTCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGCGTGca                                                                                                                                                                                                                        <  1:184394/145‑1 (MQ=255)
                                                                                                                                                                                                          gACGCTTTTTCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGCGTGCACATTTTGAACCAGCAAACAGGAAAACCCGCTGCTGACGTGACAGTCACTCTTGAAAAGAAGGCGGATAACGGCTGGTTACAACTTAATACCGCCAAAACAGATAAGGATGGACGAATTAAGGCACTGTGGCCCGAGCAAA‑CTGc                                                                       >  2:1050371/1‑289 (MQ=255)
                                                                                                                                                                                                            cGCTTTTTCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGCGTGCACATTTTGAACCAGCAAACAGGAAAACCCGCTGCTGACGTGACAGTCACTCTTGAAAAGAAGGCGGATAACGGCTGGTCACAACTTAATACCGGCAAAACAGAAAAGAATGGAACAGATAAGGCAATGTGGACCGAGAAAAGCTGCa                                                                      >  2:63500/1‑289 (MQ=255)
                                                                                                                                                                                                               tttttCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGCGTGCACATTTTGAACCAGCAAACAGGAAAACCCGCTGCTGACGTGACAGTCACTCTTGAAAAGAAGGCGGATAACGGCTGGTTACAACTTAATACCGCCAAAACAGa                                                                                                                  >  1:1132154/1‑242 (MQ=255)
                                                                                                                                                                                                               tttttCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGCGTGCACATTTTGAACCAGCAAACAGGAAAACCCGCTGCTGACGTGACAGTCACTCTTGAAAAGAAGGCGGATAACGGCTGGTTACAACTTAATACCGCCAAAACAGATAAGGATGGACGAATTAAg                                                                                               >  2:889897/1‑261 (MQ=255)
                                                                                                                                                                                                                ttttCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGCGTGca                                                                                                                                                                                                                        <  2:2705146/139‑1 (MQ=255)
                                                                                                                                                                                                                ttttCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGCGTGCACATTTTGAACCAGCAAACAGGAAAACCCGCTGCTGACGTGACAGTCACTCTTGAAAAGAAGGCGGAt                                                                                                                                                     >  2:424318/1‑206 (MQ=255)
                                                                                                                                                                                                                ttttCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGCGTGCACATTTTGAACCAGCAAACAGGAAAACCCGCTGCTGACGTGACAGTCACTCTTGAAAAGAAGGCGGATAACGGCTGGTTACAACTTAATACCGCCAAAACAGATAAGGATGGa                                                                                                        >  1:2442310/1‑251 (MQ=255)
                                                                                                                                                                                                                ttttCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGCGTGCACATTTTGAACCAGCAAACAGGAAAACCCGCTGCTGACGTGACAGTCACTCTTGAAAAGAAGGCGGATAACGGCTGGTTACAACTTAATACCGCCAAAACAGATAAGGATGGa                                                                                                        <  2:2442310/251‑1 (MQ=255)
                                                                                                                                                                                                                         tCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGCGTGca                                                                                                                                                                                                                        <  1:680308/130‑1 (MQ=255)
                                                                                                                                                                                                                         tCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGCGTGCACATTTTGAACCAGCAAACAGGAAAACCCGCTGCTGACGTGACAGTCACTCTTGAAaag                                                                                                                                                              <  1:92822/188‑1 (MQ=255)
                                                                                                                                                                                                                         tCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGCGTGCACATTTTGAACCAGCAAACAGGAAAACCCGCTGCTGACGTGACAGTCACTCTTGAAAAGAAGGCGGATAACGGCTGGTTACAACTTAATACCGCCAAAACAGATAAGGATGGACGAATTAAGGCACTGTGGCCCGAGCAAA‑CTGCAACTACGGGCGAtt                                                         >  2:401572/1‑288 (MQ=255)
                                                                                                                                                                                                                           cTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGCGTGCACATTTTGAACCAGCAAACAGGAAAACCCGCTGCTGACGTGACAGTCACTCTTGAAAAGAAGGCGGATAACGGCTGGTTACAACTTAATACCGCCAAAACAGATAAGGATGGACGAATTAAGGCAATGGTGCCCGAGCAAA‑CGGCAACTACGGGCGATTAcc                                                      >  2:224118/1‑289 (MQ=255)
                                                                                                                                                                                                                                aaCTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGCGTGCACATTTTGAACCAGCAAACAGGAAAACCCGCTGCTGACGTGACAGTCACTCTTGAAAAGAAGGCGGATAACGGCTGGTTACAACTTAATACCGCCAAAACAGATAAGGATGGACGAATTAAGGCACTGTGGCCCGAGCAAA‑CTGCAACTACGGGCGATTACCGTGTc                                                 <  2:1340600/289‑1 (MQ=255)
                                                                                                                                                                                                                                aaCTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGCGTGCACATTTTGAACCAGCAAACAGGAAAACCCGCTGCTGACGTGACAGTCACTCTTGAAAAGAAGGCGGATAACGGCTGGTTACAACTTAATACCGCCAAAACAGATAAGGATGGACGAATTAAGGCACTGTGGCCCGAGCAAA‑CTGCAACTACGGGCGATTACCGTGTc                                                 <  1:19270/289‑1 (MQ=255)
                                                                                                                                                                                                                                   tCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGCGTGCACATTTTGAACCAGCAAACAGGAAAACCCGCTGCTGACGTGACAGTCACTCTTGAAAAGAAGGCGGATAACGGCTGGt                                                                                                                                           <  1:352959/197‑1 (MQ=255)
                                                                                                                                                                                                                                   tCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGCGTGCACATTTTGAACCAGCAAACAGGAAAACCCGCTGCTGACGTGACAGTCACTCTTGAAAAGAAGGCGGATAACGGCTGGTTACAACTTAAt                                                                                                                                >  2:486781/1‑208 (MQ=255)
                                                                                                                                                                                                                                   tCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGCGTGCACATTTTGAACCAGCAAACAGGAAAACCCGCTGCTGACGTGACAGTCACTCTTGAAAAGAAGGCGGATAACGGCTGGTTACAACTTAAt                                                                                                                                <  1:486781/208‑1 (MQ=255)
                                                                                                                                                                                                                                     aTTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGCGTGCACATTTTGAACCAGCAAACAGGAAAACCCGCTGCTGACGTGACAGTCACTCTTGAAAAGAAGGCGGATAACGGCTGGTTACAACTTAATACCGCCAAAACAGATAAGGATGGACGAATTAAg                                                                                               >  2:1305899/1‑239 (MQ=255)
                                                                                                                                                                                                                                                 aGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGCGTGCACATTTTGAACCAGCAAACAGGAAAACCCGCTGCTGACGTGACAGTCACTCTTGAAAAGAAGGCGGATAACGGCTGGTTACAACTTAATACCGCCAAAACAGATAAGGATGGACGAATTAAGGCACTGTGGCCCGAGCAAA‑CTGCAACTACGGGCGATTACCGTGTCGTATTTAAAACCGGGGa                                <  1:232627/289‑1 (MQ=255)
                                                                                                                                                                                                                                                 aGGATATAAACATGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGCGTGCACATTTTGAACCAGCAAACAGGAAAACCCGCTGCTGACGTGACAGTCACTCTTGAAAAGAAGGCGGATAACGGCTGGTTACAACTTAATACCGCCAAAACAGATAAGGATGGACGAATTAAGGCACTGTGGCCCGAGCAAA‑CTGCAACTACGGGCGATTACCGTGTCGTATTTAAAACCGGGGa                                <  2:1847019/289‑1 (MQ=255)
                                                                                                                                                                                                                                                             tGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCCTTTTCATTCCCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTTGCGTGCACATTTTGAACCAGCAAACAGGAACACCCGCTTCTGACGTGACAGTCACTCTTGCAAAGCAGGCGGATAACGGCTGGTTACACCTTAATACCGCCAATACAGATCAGGATGGACGAATTAAGGCCCTGTGGCCCGAGCAAC‑GTGCCACTCCTGGCGATTACCGTGTCGTATTTACAACCGTGGCCTATTTCCAGaa                    >  1:2521371/1‑289 (MQ=255)
                                                                                                                                                                                                                                                             tGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGCGTGCACATTTTGAACCAGCAAACAGGAAAACCCGCTGCTGACGTGACAGTCACTCTTGAAAAGAAGGCGGATAACGGCTGGTTa                                                                                                                                         >  1:2136426/1‑173 (MQ=255)
                                                                                                                                                                                                                                                             tGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGCGTGCACATTTTGAACCAGCAAACAGGAAAACCCGCTGCTGACGTGACAGTCACTCTTGAAAAGAAGGCGGATAACGGCTGGTTACAACTTAATACCGCCAAAACAGATAAGGATGGa                                                                                                        >  2:1708436/1‑206 (MQ=255)
                                                                                                                                                                                                                                                             tGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGCGTGCACATTTTGAACCAGCAAACAGGAAAACCCGCTGCTGACGTGACAGTCACTCTTGAAAAGAAGGCGGATAACGGCTGGTTACAACTTAATACCGCCAAAACAGATAAGGATGGa                                                                                                        <  1:1708436/206‑1 (MQ=255)
                                                                                                                                                                                                                                                             tGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGCGTGCACATTTTGAACCAGCAAACAGGAAAACCCGCTGCTGACGTGACAGTCACTCTTGAAAAGAAGGCGGATAACGGCTGGTTACAACTTAATACCGCCAAAACAGATAAGGATGGACGAATTAAGGCACTGTGGCCCGAGCAAA‑CTGCAACTACGGGCGATTACCGTGTCGTATTTAAAACCGGGGACTATTTCAAGaa                    >  1:1041803/1‑289 (MQ=255)
                                                                                                                                                                                                                                                             tGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGCGTGCACATTTTGAACCAGCAAACAGGAAAACCCGCTGCTGACGTGACAGTCACTCTTGAAAAGAAGGCGGATAACGGCTGGTTACAACTTAATACCGCCAAAACAGATAAGGATGGACGAATTAAGGCACTGTGGCCCGAGCAAA‑CTGCAACTACGGGCGATTACCGTGTCGTATTTAAAACCGGGGACTATTTCAAGaa                    >  1:406797/1‑289 (MQ=255)
                                                                                                                                                                                                                                                             tGTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGCGTGCACATTTTGAACCAGCAAACAGGAAAACCCGCTGCTGACGTGACAGTCACTCTTGAAAAGAAGGCGGATAACGGCTGGTTACAACTTAATACCGCCAAAACAGATAAGGAGGGACGAATTAAGGCACTGTGGCCCGAGCAAA‑CTGCAACTACGGGCGATTACCGTGCCGACTTTAAAACCGGGGACCATTTCAAGaa                    >  2:2594280/1‑289 (MQ=255)
                                                                                                                                                                                                                                                              gTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCAcaacaa                                                                                                                                                                                                                                         <  1:2285212/76‑1 (MQ=255)
                                                                                                                                                                                                                                                              gTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGCGTGCACATTTTGAACCAGCAAACAGGAAAACCCGCTGCTGACGTGACAGTCACTCTTGAAAAGAAGGCGGATAACGGCTGGTTACAACTTAATACCGCCAAAACAGATAAGGATGGACGAATTAAGGCACTGTGGCCCGAGCAAA‑CTGCAACTACGGGCGATTACCGTGTCGTATTTAAAACCGGGGACTATTTCAAGaaa                   >  1:1255220/1‑289 (MQ=255)
                                                                                                                                                                                                                                                              gTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGCGTGCACATTTTGAACCAGCAAACAGGAAAACCCGCTGCTGACGTGACAGTCACTCTTGAAAAGAAGGCGGATAACGGCTGGTTACAACTTAATACCGCCAAAACAGATAAGGATGGACGAATTAAGGCACTGTGGCCCGAGCAAA‑CTGCAACTACGGGCGATTACCGTGTCGTATTTAAAACCGGGGACTATTTCAAGaa                    >  1:2267720/1‑288 (MQ=255)
                                                                                                                                                                                                                                                              gTTAAAGCGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGCGTGCACATTCTGAACCAGCAAACAGGAAAACCCGCTGCTGACGTGACAGTCACTCTTGAAAAGAAGGCGGATAACGGCTGGTTACAACTTAATACCGCCAAAACAGATAAGGATGGACGAATTAAg                                                                                               >  1:1734352/1‑214 (MQ=255)
                                                                                                                                                                                                                                                                     cGTTATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGCGTGCACATTTTGAACCAGCAAACAGGAAAACCCGCTGCTGACGTGACAGTCACTCTTGAAAAGAAGGCGGATAACGGCTGGTTACAACTTAATACCGCCAAAACAGATAAGGATGGACGAATTAAGGCACTGTGGCCCGAGCAAA‑CTGCAACTACGGGCGATTACCGTGTCGTATTTAAAACCGGGGACTATTTCAAGAAACaaaa              >  1:2388506/1‑287 (MQ=255)
                                                                                                                                                                                                                                                                        tATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGCGTGCACATTTTGAACCAGCAAACAGGAAAACCCGCTGCTGACGTGACAGTCACTCTTGAAAAGAAGGCGGATAACGGCTGGTTACAACTTAATACCGCCAAAACAGATAAGGATGGACGAATTAAGGCACTGTGGCCCGAGCAAA‑CTGCAACTACGGGCGATTAcc                                                      >  1:2064407/1‑244 (MQ=255)
                                                                                                                                                                                                                                                                        tATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGCGTGCACATTTTGAACCAGCAAACAGGAAAACCCGCTGCTGACGTGACAGTCACTCTTGAAAAGAAGGCGGATAACGGCTGGTTACAACTTAATACCGCCAAAACAGATAAGGATGGACGAATTAAGGCACTGTGGCCCGAGCAAA‑CTGCAACTACGGGCGATTAcc                                                      <  2:2064407/244‑1 (MQ=255)
                                                                                                                                                                                                                                                                        tATTTAGTACTCTCGGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGCGTGCACATTTTGAACCAGCAAACAGGAAAACCCGCTGCTGACGTGACAGTCACTCTTGAAAAGAAGGCGGATAACGGCTGGTTACAACTTAATACCGCCAAAACAGATAAGGATGGACGAATTAAGGCACTGTGGCCCGAGCAAA‑CTGCAACTACGGGCGATTACCGTGTCGTATTTAAAACCGGGGACTATTTCAAGAAACAAAATCTTg         >  2:2036351/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                               ttctctccGTAGCAACGGCAGCATTTTCATTACCTTCTTTGGTTAATTCCGCACAACAAAACATTCTTAGCGTGCACATTTTGAACCAGCAAACAGGAAAACCCGCTGCTGACGTGACAGTCACTCTTGAAAAGAAGGCGGATAACGGCTGGTTACAACTTAATACCGCCAAAACAGATAAGGATGGACGAATTAAGGCACTGTGGCCCGAGCAAA‑CTGCAACTACGGGCGATTACCGTGTCGTATTTAAAACCGGGGACTATTTCAAGAAACAAAATCTTGAAAGttt  <  2:2286037/282‑1 (MQ=255)
                                                                                                                                                                                                                                                                                    |||                                                                                                                                                                                                                                                                                          
CGCAAGATAAAGCCCATCTCTGCCATCAGAAACGGCATCGATGACATAACCCGCTTCGGAAAGCCCCTGCGTTACCCATTCCTGGGTCCTTTGATTATCTTCAATAAGTAGAATCTTCATGAAAATAATATGCCATAAATCATATGTTATAGAAACAGCCTGGTTCATTACAAAATTGTAATGCTGCTGTAAGGTTACCCTGGACGCTTTTTCGCTATCCTCAAAACTCATTCACATGACAAGGATATAAACATGTTAAAGCGTTATTTAGTACTCAGCGTAGCAACGGCAGCATTTAGTTTACCTTCTTTGGTTAATGCCGCACAACAAAACATTCTTAGCGTGCACATTTTGAACCAGCAAACAGGAAAACCCGCTGCTGACGTGACAGTCACTCTTGAAAAGAAGGCGGATAACGGCTGGTTACAACTTAATACCGCCAAAACAGATAAGGATGGACGAATTAAGGCACTGTGGCCCGAGCAAA‑CTGCAACTACGGGCGATTACCGTGTCGTATTTAAAACCGGGGACTATTTCAAGAAACAAAATCTTGAAAGTTT  >  CP042583/1676227‑1676786

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A