Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F210 I1 R1 4928 385.2 6658600 97.5% 6492135 231.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA CP042583 1,611,023 3 bp→CGA intergenic (–/–) – / – –/–

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0425831,611,0230GC99.7% 786.5 / NA 330intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base G (0/0);  major base C (167/162);  minor base T (1/0);  total (168/162)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*CP0425831,611,0240CG99.7% 786.4 / NA 330intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base C (1/0);  new base G (167/162);  total (168/162)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*CP0425831,611,0250TA99.7% 787.7 / NA 330intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base T (0/0);  major base A (167/162);  minor base C (1/0);  total (168/162)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 330 total aligned reads displayed.

AGCCATTAACGCCGCTGATATTCCGCCATTCCCGCTTTGCAGTCCACGCTGACCTGGTAATGAATATCGGCACTTTTACCACGCACGGTTAGCGGTACACTCCATTTATCATCTTTACCCTGAATGTCCTGCAAACTGACCCAAGCCACGGGATCGGCCTGACCGACAATTTTTTGATCATCTGCCCAACGCGCCACGCGATTTTGTTGATAATCACGTTTTACGCTCGCGGCAATTCCGGCAGCATCCAGATCTTCACACTTTGGGAAAGTGACGCTCTTGCTGGTTTCATTATTGGCAGCGAAAACACTTGCGCAGGCAGAAACCAACAACAGCCCTAAAAACGCCCCTCTTTTTTTCATGTTTTTCTCCATAGCACAATGATTCAGGAGAAAGCATGGTACAAATTGTCAGGAGCGCAAGTTGCTTCAGGCCGCGTGACTGGCATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGTGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGGCTAAGG  >  CP042583/1610748‑1611299
                                                                                                                                                                                                                                                                                   |||                                                                                                                                                                                                                                                                                  
         cgccgcTGATATTCCGCCATTCCCGCTTTGCAGTCCACGCTGACCTGGTAATGAATATCGGCACTTTTACCACGCACGGTTAGCGGTACTGACCATTTATCATCTTTACCCTGAATGTCCTGCAAACTGACCCAAGCCACGGGATCGGCCTGACCGACAATTTTTTGATCATCTGCCCAACGCGCCACGCGATTTTGTTGATAATCACGTTTTACGCTCGCGGCAATTCCGGCAGCATCCAGATCTTCACACTTTGGGAAAGTGACCGACTTGCTGGTTTCATTATTgg                                                                                                                                                                                                                                                                <  2:1821021/289‑1 (MQ=255)
             gcTGATATTCCGCCATTCCCGCTTTGCAGTCCACGCTGACCTGGTAATGAATATCGGCACTTTTACCACGCACGGTTAGCGGTACTGACCATTTATCATCTTTACCCTGAATGTCCTGCAAACTGACCCAAGCCACGGGATCGGCCTGACCGACAATTTTTTGATCATCTGCCCAACGCGCCACGCGATTTTGTTGATAATCACGTTTTACGCTCGCGGCAATTCCGGCAGCATCCAGATCTTCACACTTTGGGAAAGTGACCGACTTGCTGGtt                                                                                                                                                                                                                                                                          >  2:2961870/1‑275 (MQ=255)
                                            cACGCTGACCTGGTAATGAATATCGGCACTTTTACCACGCACGGTTAGCGGTACTGACCATTTATCATCTTTACCCTGAATGTCCTGCAAACTGACCCAAGCCACGGGATCGGCCTGACCGACAATTTTTTGATCATCTGCCCAACGCGCCACGCGATTTTGTTGATAATCACGTTTTACGCTCGCGGCAATTCCGGCAGCATCCAGATCTTCACACTTTGGGAAAGTGACCGACTTGCTGGTTTCATTATTGGCAGCGAAAACTGATGCGCAGGCAGAAACCaacaac                                                                                                                                                                                                                             >  2:1409283/1‑289 (MQ=255)
                                            cACGCTGACCTGGTAATGAATATCGGCACTTTTACCACGCACGGTTAGCGGTACTGACCATTTATCATCTTTACCCTGAATGTCCTGCAAACTGACCCAAGCCACGGGATCGGCCTGACCGACAATTTTTTGATCATCTGCCCAACGCGCCACGCGATTTTGTTGATAATCACGTTTTACGCTCGCGGCAATTCCGGCAGCATCCAGATCTTCACACTTTGGGAAAGTGACCGACTTGCTGGTTTCATTATTGGCAGCGAAAACTGATGCGCAGGCAGAAACCaacaac                                                                                                                                                                                                                             >  2:1861836/1‑289 (MQ=255)
                                                   aCCTGGTAATGAATATCGGCACTTTTACCACGCACGGTTAGCGGTACTGACCATTTATCATCTTTACCCTGAATGTCCTGCAAACTGACCCAAGCCACGGGATCGGCCTGACCGACAATTTTTTGATCATCTGCCCAACGCGCCACGCGATTTTGTTGATAATCACGTTTTACGCTCGCGGCAATTCCGGCAGCATCCAGATCTTCACACTTTGGGAAAGTGACCGACTTGCTGGTTTCATTATTGGCAGCGAAAACTGATGCGCAGGCAGAAACCAACAACAGCCCTa                                                                                                                                                                                                                      >  2:1240556/1‑289 (MQ=255)
                                                    ccTGGTAATGAATATCGGCACTTTTACCACGCACGGTTAGCGGTACTGACCATTTATCATCTTTACCCTGAATGTCCTGCAAACTGACCCAAGCCACGGGATCGGCCTGACCGACAATTTTTTGATCATCTGCCCAACGCGCCACGCGATTTTGTTGATAATCACGTTTTACGCTCGCGGCAATTCCGGCAGCATCCAGATCTTCACACTTTGGGAAAGTGACCGACTTGCTGGTTTCATTATTGGCAGCGAAAACTGATGCGCAGGCAGAAACCAACAACAGCCCTaa                                                                                                                                                                                                                     >  1:2125074/1‑289 (MQ=255)
                                                    ccTGGTAATGAATATCGGCACTTTTACCACGCACGGTTAGCGGTACTGACCATTTATCATCTTTACCCTGAATGTCCTGCAAACTGACCCAAGCCACGGGATCGGCCTGACCGACAATTTTTTGATCATCTGCCCAACGCGCCACGCGATTTTGTTGATAATCACGTTTTACGCTCGCGGCAATTACGGCAGCATCCAGATCTTCCAACTTTGGGAAAGTGACCGACTTGCGTGTTTCATTTTTGGCAGCGAACACTGATGTCCAGGCCGAAACCACCAACAGCCCCaa                                                                                                                                                                                                                     >  2:47037/1‑289 (MQ=255)
                                                       ggTAATGAATATCGGCACTTTTACCACGCGCGGTTAGCGGTACTGACCATTTATCATCTTTACCCTGAATGTCCTGCAAACTGACCCAAGCCACGGGATCGGCCTGACCGACAATTTTTTGATCATCTGCCCAACGCGCCACGCGATTTTGTTGATAATCACGTTTTACGCTCGCGGCAATTCCGGCAGCATCCAGATCTTCACACTTTGGGAAAGTGACCGACTTGCTGGTTTCATTATTGGCAGCGAAAACTGATGCGCAGGCAGAAACCAACAACAGCCCTaaaaa                                                                                                                                                                                                                  <  1:93518/289‑1 (MQ=255)
                                                           aTGAATATCGGCACTTTTACCACGCACGGTTAGCGGTACTGACCATTTATCATCTTTACCCTGAATGTCCTGCAAACTGACCCAAGCCACGGGATCGGCCTGACCGACAATTTTTTGATCATCTGCCCAACGCGCCACGCGATTTTGTTGATAATCACGTTTTACGCTCGCGGCAATTCCGGCAGCATCCAGATCTTCACACTTTGGGAAAGTGACCGACTTGCTGGTTTCATTATTGGCAGCGAAAACTGATGCGCAGGCAGAAACCAACAACAGCCCTAAAAACGcc                                                                                                                                                                                                              <  1:2803952/289‑1 (MQ=255)
                                                             gAATATCGGCACTTTTACCACGCACGGTTAGCGGTACTGACCATTTATCATCTTTACCCTGAATGTCCTGCAAACTGACCCAAGCCACGGGATCGGCCTGACCGACAATTTTTTGATCATCTGCCCAACGCGCCACGCGATTTTGTTGATAATCACGTTTTACGCTCGCGGCAATTCCGGCAGCATCCAGATCTTCACACTTTGGGAAAGTGACCGACTTGCTGGTTTCATTATTGGCAGCGAAAACTGATGCGCAGGCAGAAACCaacaac                                                                                                                                                                                                                             >  1:2864722/1‑272 (MQ=255)
                                                               atatCGGCACTTTTACCACGCACGGTTAGCGGTACTGACCATTTATCATCTTTACCCTGAATGTCCTGCAAACTGACCCAAGCCACGGGATCGGCCTGACCGACAATTTTTTGATCATCTGCCCAACGCGCCACGCGATTTTGTTGATAATCACGTTTTACGCTCGCGGCAATTCCGGCAGCATCCAGATCTTCACACTTTGGGAAAGTGACCGACTTGCTGGTTTCATTATTGGCAGCGAAAACTGATGCGCAGGCAGAAACCAACAACAGCCCTAAAAACGcccc                                                                                                                                                                                                            >  1:1450383/1‑287 (MQ=255)
                                                                taccGGCCCTTTTACCACGACCGGTTATCGGTACTGCCCATTTATCATCTTTACCCTGAATGTCCTGCAAACTAACCCAAGCCACGGGATCGGCCTGACCGAAAATTTGTTGATCATCTGCCCAACGCGCCACGCGATTTTGTTGATAATCACGTTTTACGCTCGCGGCAATTCCGGCAGCATCCAGATCTTCACCCTTTGGGAAAGTGACCGACTTGCTGGTTTCATTATTGGCAGCGAAAACTGATGCGCAGGCAGAAACCAACAACAGCCCTAAAAACGCCCctct                                                                                                                                                                                                         <  2:58216/286‑1 (MQ=255)
                                                                  tCGGCACTTTTACCACGCACGGTTAGCGGTACTGACCATTTATCATCTTTACCCTGAATGTCCTGCAAACTGACCCAAGCCACGGGATCGGCCTGACCGACAATTTTTTGATCATCTGCCCAACGCGCCACGCGATTTTGTTGATAATCACGTTTTACGCTCGCGGCAATTCCGGCAGCATCCAGATCTTCACACTTTGGGAAAGTGACCGACTTGCTgg                                                                                                                                                                                                                                                                            <  2:250671/220‑1 (MQ=255)
                                                                  tCGGCACTTTTACCACGCACGGTTAGCGGTACTGACCATTTATCATCTTTACCCTGAATGTCCTGCAAACTGACCCAAGCCACGGGATCGGCCTGACCGACAATTTTTTGATCATCTGCCCAACGCGCCACGCGATTTTGTTGATAATCACGTTTTACGCTCGCGGCAATTCCGGCAGCATCCAGATCTTCACACTTTGGGAAAGTGACCGACTTGCTGGTTTCATTATTGGCa                                                                                                                                                                                                                                                              >  2:1265147/1‑234 (MQ=255)
                                                                   cGGCACTTTTACCACGCACGGTTAGCGGTACTGACCATTTATCATCTTTACCCTGAATGTCCTGCAAACTGACCCAAGCCACGGGATCGGCCTGACCGACAATTTTTTGATCATCTGCCCAACGCGCCACGCGATTTTGTTGATAATCACGTTTTACGCTCGCGGCAATTCCGGCAGCATCCAGATCTTCACCCTTTGGGAAAGTGACCGACTTGCTGGTTTCATTATTGGCATCGAAAACTGATGACCATGCAGAAACCAACAACAGCCCTaaaaaatgtcctatat                                                                                                                                                                                                       >  2:1252572/1‑277 (MQ=255)
                                                                   cGGCACTTTTACCACGCACGGTTAGCGGTACTGACCATTTATCATCTTTACCCTGAATGTCCTGCAAACTGACCCAAGCCACGGGATCGGCCTGACCGACAATTTTTTGATCATCTGCCCAACGCGCCACGCGATTTTGTTGATAATCACGTTTTACGCTCGCGGCAATTCCGGCAGCATCCAGATCTTCACACTTTGGGAAAGTGACCGACTTGCTGGTTTCATTATTGGCAGCGAAAACTGATGCGCAGGCAGAAACCAACAACAGCCCTAAAAACGCCCCTCtttt                                                                                                                                                                                                      >  2:2082196/1‑289 (MQ=255)
                                                                   cGGCACTTTTACCACGCACGGTTAGCGGTACTGACCATTTATCATCTTTACCCTGAATGTCCTGCAAACTGACCCAAGCCACGGGATCGGCCTGACCGACAATTTTTTGATCATCTGCCCAACGCGCCACGCGATTTTGTTGATAATCACGTTTTACGCTCGCGGCAATTCCGGCAGCATCCAGATCTTCACACTTTGGGAAAGTGACCGACTTGCTGGTTTCATTATTGGCAGCGAAAACTGATGCGCAGGCAGAAACCAACAACAGCCCTAAAAACGCCCCTCtttt                                                                                                                                                                                                      >  1:475391/1‑289 (MQ=255)
                                                                                  gcacgGTTAGCGGTACTGACCATTTATCATCTTTACCCTGAATGTCCTGCAAACTGACCCAAGCCACGGGATCGGCCTGACCGACAATTTTTTGATCATCTGCCCAACGCGCCACGCGATTTTGTTGATAATCACGTTTTACGCTCGCGGCAATTCCGGCAGCATCCAGATCTTCACACTTTGGGAAAGTGACCGACTTGCTGGTTTCATTATTGGCAGCGAAAACTGATGCGCAGGCAGAAACCAACAACAGCCCTAAAAACGCCCCTCTTTTTTTCATGTTTTtctc                                                                                                                                                                                       <  2:1543932/289‑1 (MQ=255)
                                                                                   cacgGTTAGCGGTACTGACCATTTATCATCTTTACCCTGAATGTCCTGCAAACTGACCCAAGCCACGGGATCGGCCTGACCGACAATTTTTTGATCATCTGCCCAACGCGCCACGCGATTTTGTTGATAATCACGTTTTACGCTCGCGGCAATTCCGGCAGCATCCAGATCTTCACACTTTGGGAAAGTGACCGACTTGCTGGTTTCATTATTGGCAGCGAAAACTGATGCGCAGGCAGAAACCAACAACAGCCCTAAAAACGCCCCTCTTTTTTTCATGTTTTtctc                                                                                                                                                                                       >  2:2381770/1‑288 (MQ=255)
                                                                                   cacgGTTAGCGGTACTGACCATTTATCATCTTTACCCTGAATGTCCTGCAAACTGACCCAAGCCACGGGATCGGCCTGACCGACAATTTTTTGATCATCTGCCCAACGCGCCACGCGATTTTGTTGATAATCACGTTTTACGCTCGCGGCAATTCCGGCAGCATCCAGATCTTCACACTTTGGGAAAGTGACCGACTTGCTGGTTTCATTATTGGCAGCGAAAACTGATGCGCAGGCAGAAACCAACAACAGCCCTAAAAACGCCCCTCTTTTTTTCATGTTTTTCTcc                                                                                                                                                                                      >  1:603703/1‑289 (MQ=255)
                                                                                    acgGTTAGCGGTACTGACCATTTATCATCTTTACCCTGAATGTCCTGCAAACTGACCCAAGCCACGGGATCGGCCTGACCGACAATTTTTTGATCATCTGCCCAACGCGCCACGCGATTTTGTTGATAATCACGTTTTACGCTCGCGGCAATTCCGGCAGCATCCAGATCTTCACACTTTGGGAAAGTGACCGACTTGCTGGTTTCATTATTGGCAGCGAAAACTGATGCGCAGGCAGAAACCAACAACAGCCCTAAAAACGCCCCTCTTTTTTTCATGTTTTTCTCCa                                                                                                                                                                                     <  1:1243975/289‑1 (MQ=255)
                                                                                        ttAGCGGTACTGACCATTTATCATCTTTACCCTGAATGTCCTGCAAACTGACCCAAGCCACGGGATCGGCCTGACCGACAATTTTTTGATCATCTGCCCAACGCGCCACGCGATTTTGTTGATAATCACGTTTTACGCTCGCGGCAATTCCGGCAGCATCCAGATCTTCACACTTTGGGAAAGTGACCGACTTGCTGGTTTCATTATTGGCAGCGAAAACTGATGCGCAGGCAGAAACCAACAACAGCCCTAAAAACGCCCCTCTTTTTTTCATGTTTTTCTCCATAg                                                                                                                                                                                  <  1:1861836/288‑1 (MQ=255)
                                                                                        ttAGCGGTACTGACCATTTATCATCTTTACCCTGAATGTCCTGCAAACTGACCCAAGCCACGGGATCGGCCTGACCGACAATTTTTTGATCATCTGCCCAACGCGCCACGCGATTTTGTTGATAATCACGTTTTACGCTCGCGGCAATTCCGGCAGCATCCAGATCTTCACACTTTGGGAAAGTGACCGACTTGCTGGTTTCATTATTGGCAGCGAAAACTGATGCGCAGGCAGAAACCAACAACAGCCCTAAAAACGCCCCTCTTTTTTTCATGTTTTTCTCCATAg                                                                                                                                                                                  <  2:329278/288‑1 (MQ=255)
                                                                                            cggtactgaccATTTATCATCTTTACCCTGAATGTCCTGCAAACTGACCCAAGCCACGGGATCGGCCTGACCGACAATTTTTTGATCATCTGCCCAACGCGCCACGCGATTTTGTTGATAATCACGTTTTACGCTCGCGGCAATTCCGGCAGCATCCAGATCTTCACACTTTGGGAAAGTGACCGACTTGCTGGTTTCATTATTGGCAGCGAAAACTGATGCGCAGGCAGAAACCAACAACAGCCCTAAAAACGCCCCTCTTTTTTTCATGTTTTTCTCCATAGCACaa                                                                                                                                                                             >  1:1788293/10‑289 (MQ=255)
                                                                                                actgaccATTTATCATCTTTACCCTGAATGTCCTGCAAACTGACCCAAGCCACGGGATCGGCCTGACCGACAATTTTTTGATCATCTGCCCAACGCGCCACGCGATTTTGTTGATAATCACGTTTTACGCTCGCGGCAATTCCGGCAGCATCCAGATCTTCACACTTTGGGAAAGTGACCGACTTGCTGGTTTCATTATTGGc                                                                                                                                                                                                                                                               >  1:2582783/6‑203 (MQ=255)
                                                                                                    accATTTATCATCTTTACCCTGAATGTCCTGCAAACTGACCCAAGCCACGGGATCGGCCTGACCGACAATTTTTTGATCATCTGCCCAACGCGCCACGCGATTTTGTTGATAATCACGTTTTACGCTCGCGGCAATTCCGGCAGCATCCAGATCTTCACACTTTGGGAAAGTGACCGACTTGCTGGTTTCATTATTGGCAGCGAAAACTGATGCGCAGGCAGAAACCAACAACAGCCCTAAAAACGCCCCTCTTTTTTTCATGTTTTTCTCCATAGCACAATGATTCAg                                                                                                                                                                     >  1:2341893/2‑289 (MQ=255)
                                                                                                         ttATCATCTTTACCCTGAATGTCCTGCAAACTGACCCAAGCCACGGGATCGGCCTGACCGACAATTTTTTGATCATCTGCCCAACGCGCCACGCGATTTTGTTGATAATCACGTTTTACGCTCGCGGCAATTCCGGCAGCATCCAGATCTTCACACTTTGGGAAAGTGACCGACTTGCTGGTTTCATTATTGGCAGCGAAAACTGATGCGCAGGCAGAAACCAACAAACGCCCTAAAAACGCACCTCTTTTTTTCATGTTTTtctc                                                                                                                                                                                       >  2:3257572/1‑266 (MQ=255)
                                                                                                             catcTTTACCCTGAATGTCCTGCAAACTGACCCAAGCCACGGGATCGGCCTGACCGACAATTTTTTGATCATCTGCCCAACGCGCCACGCGATTTTGTTGATAATCACGTTTTACGCTCGCGGCAATTCCGGCAGCATCCAGATCTTCACACTTTGGGAAAGTGACCGACTTGCTGGTTTCATTATTGGCAGCGAAAACTGATGCGTAGGCAGAAACCAACAACAGCCCTAAAAACGCCCCTCTTTTTTTCATGTTTTTCTCCATAGCACAATGATTCAGGAGAAAGCa                                                                                                                                                            <  2:650054/289‑1 (MQ=255)
                                                                                                             catcTTTACCCTGAATGTCCTGCAAACTGACCCAAGCCACGGGATCGGCCTGACCGACAATTTTTTGATCATCTGCCCAACGCGCCACGCGATTTTGTTGATAATCACGTTTTACGCTCGCGGCAATTCCGGCAGCATCCAGATCTTCACACTTTGGGAAAGTGACCGACTTGCTGGTTTCATTATTGGCAGCGAAAACTGATGCGCAGGCAGAAACCAACAACAGCCCTAAAAACGCCCCTCTTTTTTTCATGTTTTTCTCCATAGCACAATGATTCAGGAGAAAGCa                                                                                                                                                            <  1:2082196/289‑1 (MQ=255)
                                                                                                              atcTTTACCCTGAATGTCCTGCAAACTGACCCAAGCCACGGGATCGGCCTGACCGACAATTTTTTGATCATCTGCCCAACGCGCCACGCGATTTTGTTGATAATCACGTTTTACGCTCGCGGCAATTCCGGCAGCATCCAGATCTTCACACTTTGGGAAAGTGACCGACTTGCTGGTTTCATTATTGGCAGCGAAAACTGATGCGCAGGCAGAAACCAACAACAGCCCTAAAAACGCCCCTCTTTTTTTCATGTTTTTCTCCATAGCACAATGATTCAGGAGAAAGCAt                                                                                                                                                           <  1:2736054/289‑1 (MQ=255)
                                                                                                                cTTTACCCTGAATGTCCTGCAAACTGACCCAAGCCACGGGATCGGCCTGACCGACAATTTTTTGATCATCTGCCCAACGCGCCACGCGATTTTGTTGATAATCACGTTTTACGCTCGCGGCAATTCCGGCAGCATCCAGATCTTCACACTTTGGGAAAGTGACCGACTTGCTGGTTTCATTATTGGCAGCGAAAACTGATGCGCAGGCAGAAACCAACAACAGCCCTAAAAACGCCCCTCTTTTTTTCATGTTTTTCTCCATAGCACAATGATTCAGGAGAAAGCATgg                                                                                                                                                         <  1:154456/289‑1 (MQ=255)
                                                                                                                  ttACCCTGAATGTCCTGCAAACTGACCCAAGCCACGGGATCGGCCTGACCGACAATTTTTTGATCATCTGCCCAACGCGCCACGCGATTTTGTTGATAATCACGTTTTACGCTCGCGGCAATTCCGGCAGCATCCAGATCTTCACACTTTGGGAAAGTGACCGACTTGCTGGTTTCATTATTGGCAGCGAAAACTGATGCGCAGGCAGAAACCAACAACAGCCCTAAAAACGCCCCTCTTTTTTTCATGTTTTTCTCCATAGCACAATGATTCAGGAGAAAGCATGGTa                                                                                                                                                       >  2:1354449/1‑289 (MQ=255)
                                                                                                                   tcccttgatggTCCTGCAAACTGACCCAAGACCCTGGTGCGGCCTGACCGACAATTTTTTGATCATCTGCCCAGCGCGCCACGCGACTTTGTTGATAATCACGTTTTACGCTCGCGGCAATTCCGGCAGCATCCAGATCTTCACACTTCGGGAAAGTGACCGACTCGCTGGTTTCATTATTGGCAGCGAAAACTGATGCGCAGGCATAAACCAACAACAGCCCTAAAAACGCCCCTCTTTTTTTCATGTTTTTCTCCATAGCACAATGATTCAGGAGAAAGCATGGTAc                                                                                                                                                      <  2:2782449/279‑1 (MQ=255)
                                                                                                                   tACCCTGAATGTCCTGCAAACTGACCCAAGCCACGGGATCGGCCTGACCGACAATTTTTTGATCATCTGCCCAACGCGCCACGCGATTTTGTTGATAATCACGTTTTACGCTCGCGGCAATTCCGGCAGCATCCAGATCTTCACACTTTGGGAAAGTGACCGACTTGCTGGTTTCATTATTGGCAGCGAAAACTGATGCGCAGGCAGAAACCAACAACAGCCCTAAAAACGCCCCTCTTTTTTTCATGTTTTTCTCCATAGCACAATGATTCAGGAGAAAGCATGGTAc                                                                                                                                                      >  1:1025701/1‑289 (MQ=255)
                                                                                                                   tACCCTGAATGTCCTGCAAACTGACCCAAGCCACGGGATCGGCCTGACCGACAATTTTTTGATCATCTGCCCAACGCGCCACGCGATTTTGTTGATAATCACGTTTTACGCTCGCGGCAATTCCGGCAGCATCCAGATCTTCACACTTTGGGAAAGTGACCGACTTGCTGGTTTCATTATTGGCAGCGAAAACTGATGCGCAGGAAGAAACCAACAACAGCCCTAAAAACGCCCCCCTTTTTTTCATGTTTTTCTCAATAGCACAATGTTTCGGGAGAAAGCATGGTat                                                                                                                                                      >  2:2736054/1‑288 (MQ=255)
                                                                                                                          aaTGTCCTGCAAACTGACCCAAGCCACGGGATCGGCCTGACCGACAATTTTTTGATCATCTGCCCAACGCGCCACGCGATTTTGTTGATAATCACGTTTTACGCTCGCGGCAATTCCGGCAGCATCCAGATCTTCACACTTTGGGAAAGTGACCGACTTGCTGGTTTCATTATTGGCAGCGAAAACTGATGCGCAGGCAGAAACCAACAACAGCCCTAAAAACGCCCCTCTTTTTTTCATGTTTTTCTCCATAGCACAATGATTCAGGATAAAGCATGGTACAAATTGt                                                                                                                                               >  1:1154688/1‑289 (MQ=255)
                                                                                                                               ccTGCAAACTGACCCAAGCCACGGGATCGGCCTGACCGACAATTTTTTGATCATCTGCCCAACGCGCCACGCGATTTTGTTGATAATCACGTTTTACGCTCGCGGCAATTCCGGCAGCATCCAGATCTTCACACTTTGGGAAAGTGACCGACTTGCTGGTTTCATTATTGGCAGCGAAAACTGATGCGCAGGCAGAAACCAACAACAGCCCTAAAAACGCCCCTCTTTTTTTCATGTTTTTCTCCATAGCACAATGATTCAGGAGAAAGCATGGTACAAATTGTCAGGa                                                                                                                                          >  1:131381/1‑289 (MQ=255)
                                                                                                                                cTGCAAACTGACCCAAGCCACGGGATCGGCCTGACCGACAATTTTTTGATCATCTGCCCAACGCGCCACGCGATTTTGTTGATAATCACGTTTTACGCTCGCGGCAATTCCGGCAGCATCCAGATCTTCACACTTTGGGAAAGTGACCGACTTGCTGGTTTCATTATTGGCAGCGAAAACTGATGCGCAGGCAGAAACCAACAACAGCCCTAAAAACGCCCCTCTTTTTTTCATGTTTTTCTCCATAGCACAATGATTCAGGAGAAAGCATGGTAc                                                                                                                                                      >  1:2005453/1‑276 (MQ=255)
                                                                                                                                  gCAAACTGCCCCAAGCCACGGGATCGGCCTGACCGACAATTTTTTGATCATCTGCCCAACGCGCCACGCGATTTTGTTGATAATCACGTTTTACGCTCGCGGCAATTCCGGCAGCATCCAGATCTTCACACTTTGGGAAAGTGACCCACTTGCTGGTTTCAGTATTGGCAGCGAAAACTGATGCGCAGGCAGAAACGAACAACAGCCCTACAAATGCCCCTCGTGTTGTCATGTTTTCCGCCATAGCCCAATGATTCAGGAGACAGCATGGTACACATTGTCTCGAgc                                                                                                                                        >  2:1599547/1‑288 (MQ=255)
                                                                                                                                      aCTGACCCAAGCCACGGGATCGGCCTGACCGACAATTTTTTGATCATCTGCCCAACGCGCCACGCGATTTTGTTGATAATCACGTTTTACGCTCGCGGCAATTCCGGCAGCATCCAGATCTTCACACTTTGGGAAAGTGACCGACTTGCTGGTTTCATTATTGGCAGCGAAAACTGATGCGCAGGCAGAAACCAACAACAGCCCTAAAAACGCCCCTCTTTTTTTCATGTTTTTCTCCATAGCACAATGATTCAGGAGAAAGCATGGTACAAATTGTCAGGAGCGCAAg                                                                                                                                   <  2:824957/289‑1 (MQ=255)
                                                                                                                                        tGACCCAAGCCACGGGATCGGCCTGACCGACAATTTTTTGATCATCTGCCCAACGCGCCACGCGATTTTGTTGATAATCACGTTTTACGCTCGCGGCAATTCCGGCAGCATCCAGATCTTCACACTTTGGGAAAGTGACCGACTTGCTGGTTTCATTATTGGCAGCGAAAACTGATGCgcaggcag                                                                                                                                                                                                                                        >  2:946192/1‑186 (MQ=255)
                                                                                                                                        tGACCCAAGCCACGGGATCGGCCTGACCGACAATTTTTTGATCATCTGCCCAACGCGCCACGCGATTTTGTTGATAATCACGTTTTACGCTCGCGGCAATTCCGGCAGCATCCAGATCTTCACACTTTGGGAAAGTGACCGACTTGCTGGTTTCATTATTGGCAGCGAAAACTGATGCGCAGGCAGAAACCAACAACAGCCCTAAAAACGccc                                                                                                                                                                                                             >  2:725484/1‑213 (MQ=255)
                                                                                                                                        tGACCCAAGCCACGGGATCGGCCTGACCGACAATTTTTTGATCATCTGCCCAACGCGCCACGCGATTTTGTTGATAATCACGTTTTACGCTCGCGGCAATTCCGGCAGCATCCAGATCTTCACACTTTGGGAAAGTGACCGACTTGCTGGTTTCATTATTGGCAGCGAAAACTGATGCGCAGGCAGAAACCAACAACAGCCCTAAAAACGCCCCTCTTTTTTTCATGTTTTTCTCCa                                                                                                                                                                                     >  1:2249632/1‑237 (MQ=255)
                                                                                                                                        tGACCCAAGCCACGGGATCGGCCTGACCGACAATTTTTTGATCATCTGCCCAACGCGCCACGCGATTTTGTTGATAATCACGTTTTACGCTCGCGGCAATTCCGGCAGCATCCAGATCTTCACACTTTGGGAAAGTGACCGACTTGCTGGTTTCATTATTGGCAGCGAAAACTGATGCGCAGGCAGAAACCAACAACAGCCCTAAAAACGCCCCTCTTTTTTTCATGTTTTTCTCCa                                                                                                                                                                                     <  2:2249632/237‑1 (MQ=255)
                                                                                                                                        tGACCCAAGCCACGGGATCGGCCTGACCGACAATTTTTTGATCATCTGCCCAACGCGCCACGCGATTTTGTTGATAATCACGTTTTACGCTCGCGGCAATTCCGGCAGCATCCAGATCTTCACACTTTGGGAAAGTGACCGACTTGCTGGTTTCATTATTGGCAGCGAAAACTGATGCGCAGGCAGAAACCAACAACAGCCCTAAAAACGCCCCTCTTTTTTTCATGTTTTTCTCCATAGCACAATGATTCAGGAGAAAGCATGGTACAAATTGTCAGGAGCGCAAGtt                                                                                                                                 >  1:2283055/1‑289 (MQ=255)
                                                                                                                                                gCCACGGGATCGGCCTGACCGACAATTTTTTGATCATCTGCCCAACGCGCCACGCGATTTTGTTGATAATCACGTTTTACGCTCGCGGCAATTCCGGCAGCATCCAGATCTTCACACTTTGGGAAAGTGACCGACTTGCTGGTTTCATTATTGGCAGCGAAAACTGATGCGCAGGCAGAAACCAACAACAGCCCTAAAAACGCCCCTCTTTTTTTCATGttttt                                                                                                                                                                                          >  1:2311076/1‑224 (MQ=255)
                                                                                                                                                    cGGGATCGGCCTGACCGACAATTTTTTGATCATCTGCCCAACGCGCCACGCGATTTTGTTGATAATCACGTTTTACGCTCGCGGCAATTCCGGCAGCATCCAGATCTTCACACTTTGGGAAAGTGACCGACTTGCTGGTTTCATTATTGGCAGCGAAAACTGATGCGCAGGCAGAAACCAACAACAGCCCTAAAAACGCCCCTCTTTTTTTCATGTTTTTCTCCATAGCACAATGATTCAGGAGAAAGCATGGTACAAATTGTCAGGAGCGCACGTTGCTTCAGGCcgc                                                                                                                     >  2:3164148/1‑289 (MQ=255)
                                                                                                                                                         tCGGCCTGACCGACAATTTTTTGATCATCTGCCCAACGCGCCACGCGATTTTGTTGATAATCACGTTTTACGCTCGCGGCAATTCCGGCAGCATCCAGATCTTCACACTTTGGGAAAGTGACCGACTTGCTGGTTTCATTATTGGCAGCGAAAACTGATGCGCAGGCAGAAACCAACAACAGCCCTAAAAACGCCCCTCTTTTTTTCATGTTTTTCTCCATAGCACAATGATTCAGGAGAAAGCATGGTACAAATTGTCAGGAGCGCAAGTTGCTTCAGGCCGCGTgtg                                                                                                                >  2:39577/1‑287 (MQ=255)
                                                                                                                                                         tCGGCCTGACCGACAATTTTTTGATCATCTGCCCAACGCGCCACGCGATTTTGTTGATAATCACGTTTTACGCTCGCGGCAATTCCGGCAGCATCCAGATCTTCACACTTTGGGAAAGTGACCGACTTGCTGGTTTCATTATTGGCAGCGAAAACTGATGCGCAGGCAGAAACCAACAACAGCCCTAAAAACGCCCCTCTTTTTTTCATGTTTTTCTCCATAGCACAATGATTCAGGAGAAAGCATGGTACAAATTGTCAGGAGCGCAAGTTGCTTCAGGCCGCGTgtg                                                                                                                >  1:808892/1‑287 (MQ=255)
                                                                                                                                                          cGGCCTGACCGACAATTTTTTGATCATCTGCCCAACGCGCCACGCGATTTTGTTGATAATCACGTTTTACGCTCGCGGCAATTCCGGCAGCATCCAGATCTTCACACTTTGGGAAAGTGACCGACTTGCTGGTTTCATTATTGGCAGCGAAAACTGATGCGCAGGCAGAAACCAACAACAGCCCTAAAAACGCCCCTCTTTTTTTCATGTTTTTCTCCATAGCACAATGATTCAGGAGAAAGCATGGTACAAATTGTCAGGAGCGCAAGTTGCTTCAGGCCGCGTgtga                                                                                                               >  1:1683499/1‑286 (MQ=255)
                                                                                                                                                            gCCTGACCGACAATTTTTTGATCATCTGCCCAACGCGCCACGCGATTTTGTTGATAATCACGTTTTACGCTCGCGGCAATTCCGGCAGCATCCAGATCTTCACACTTTGGGAAAGTGACCGACTTGCTGGTTTCATTATTGGCAGCGAAAACTGATGCGCAGGCAGAAACCAACAACAGCCCTAAAAACGCCCCTCTTTTTTTCATGTTTTTCTCCATAGCACAATGATTCAGGAGAAAGCATGGTACAAATTGTCAGGAGCGCAAGTTGCTTCAGGCCGCGTgtgag                                                                                                              >  2:2531749/1‑284 (MQ=255)
                                                                                                                                                               tGACCGACAATTTTTTGATCATCTGCCCAACGCGCCACGCGATTTTGTTGATAATCACGTTTTACGCTCGCGGCAATTCCGGCAGCATCCAGATCTTCACACTTTGGGAAAGTGACCGACTTGCTGGTTTCATTATTg                                                                                                                                                                                                                                                                 <  1:1725611/138‑1 (MQ=255)
                                                                                                                                                                 aCCGACAATTTTTTGATCATCTGCCCAACGCGCCACGCGATTTTGTTGATAATCACGTTTTACGCTCGCGGCAATTCCGGCAGCATCCAGATCTTCACACTTTGGGAAAGTGACCGACTTGCTGGTTTCATTATTGGCAGCGAAAACTGATGCGCAGGCAGAAACCAACAACAGCCCTAAAAACGCCCCTCTTTTTTTCATGTTTTtct                                                                                                                                                                                        <  2:1988150/209‑1 (MQ=255)
                                                                                                                                                                 aCCGACAATTTTTTGATCATCTGCCCAACGCGCCACGCGATTTTGTTGATAATCACGTTTTACGCTCGCGGCAATTCCGGCAGCATCCAGATCTTCACACTTTGGGAAAGTGACCGACTTGCTGGTTTCATTATTGGCAGCGAAAACTGATGCGCAGGCAGAAACCAACAACAGCCCTAAAAACGCCCCTCTTTTTTTCATGTTTTTCTCCATAGCACAATGATTCAGGAGAAAGCATGGTACAAATTGTCAGGAGCGCAAGTTTCTTTAGGCCGCGTgtgaggcagct                                                                                                        >  2:1753685/1‑279 (MQ=255)
                                                                                                                                                                   ctaCAATTTTTTGTTCATCTGCCCACCGCGCCACGCGATTTTGTTGATAATCACGTTTTACGCTCGCGGCAATTCCGGCAGCATCCAGATCTTCACACTTTGGGAAAGTGACCGACTTGCTGGTTTCATTATTGGCAGCGAAAACTGATGCGCAGGCAGAAACCAACAACAGCCCTAAAAACGCCCCTCTTTTTTTCATGTTTTTCTCCATAGCACAATGATTCAGGAGAAAGCATGGTACAAATTGTCAGGAGCGCAAGTTGCTTCAGGCCGCGTGTGAGGCATCTTc                                                                                                      <  2:341630/287‑1 (MQ=255)
                                                                                                                                                                       aaTTTTTTGATCATCTGCCCAACGCGCCACGCGATTTTGTTGATAATCACGTTTTACGCTCGCGGCAATTCCGGCAGCATCCAGATCTTCACACTTTGGGAAAGTGACCGACTTGCTGGTTTCATTATTGGCAGCGAAAACTGATGCGCAGGCAGAAACCAACAACAGCCCTAAAAACGCCCCTCTTTTTTTCATGTTTTTCTCCa                                                                                                                                                                                     <  2:1665295/206‑1 (MQ=255)
                                                                                                                                                                          tttttGATCATCTGCCCAACGCGCCACGCGATTTTGTTGATAATCACGTTTTACGCTCGCGGCAATTCCGGCAGCATCCAGATCTTCACACTTTGGGAAAGTGACCGACTTGCTGGTTTCATTATTGGCAGCGAAAACTGATGCGCAGGCAGAAACCAACAACAGCCCTAAAAACGCCCCTCTTTTTTTCATGTTTTTCTCCATAGCACAATGATTCAGGAGAAAGCATGGTACAAATTGTCAGGAGCGCAAGTTGCTTCAGGCCGCGTGTGAGGCATCTTCCTCTTCg                                                                                               <  1:570648/289‑1 (MQ=255)
                                                                                                                                                                                     cTGCCCAACGCGCCACGCGATTTTGTTGATAATCACGTTTTACGCTCGCGGCAATTCCGGCAGCATCCAGATCTTCACACTTTGGGAAAGTGACCGACTTGCTGGTTTCATTATTGGCAGCGAAAACTGATGCGCAGGCAGAAACCAACAACAGCCCTAAAAACGCCCCTCTTTTTTTCATGTTTTTCTCCATAGCACAATGATTCAGGAGAAAGCATGGTACAAATTGTCAGGAgcg                                                                                                                                       >  1:1379757/1‑238 (MQ=255)
                                                                                                                                                                                       gCCCAACGCGCCACGCGATTTTGTTGATAATCACGTTTTACGCTCGCGGCAATTCCGGCAGCATCCAGATCTTCACACTTTGGGAAAGTGACCGACTTGCTGGTTTCATTATTGGCAGCGAAAACTGATGCGCAGGCAGAAACCAACAACAGCCCTAAAAACGCCCCTCTTTTTTTCATGTTTTTCTCCATAGCACAATGATTCAGGAGAAAGCATGGTACAAATTGTCAGGAGCGCAAGTTGCTTCAGGCCGCGTGTGAGGCATCTTCCTCTTCGGATTCAGCACcga                                                                                  <  2:2324805/289‑1 (MQ=255)
                                                                                                                                                                                       gCCCAACGCGCCACGCGATTTTGTTGATAATCACGTTTTACGCTCGCGGCAATTCCGGCAGCATCCAGATCTTCACACTTTGGGAAAGTGACCGACTTGCTGGTTTCATTATTGGCAGCGAAAACTGATGCGCAGGCAGAAACCAACAACAGCCCTAAAAACGCCCCTCTTTTTTTCATGTTTTTCTCCATAGCACAATGATTCAGGAGAAAGCATGGTACAAATTGTCAGGAGCGCAAGTTGCTTCAGGCCGCGTGTGAGGCATCTTCCTCTTCGGATTCAGCACcg                                                                                   >  2:881417/1‑288 (MQ=255)
                                                                                                                                                                                        cccAACGCGCCACGCGATTTTGTTGATAATCACGTTTTACGCTCGCGGCAATTCCGGCAGCATCCAGATCTTCACACTTTGGGAAAGTGACCGACTTGCTGGTTTCATTATTGGCAGCGAAAACTGATGCGCAGGCAGAAACCAACAACAGCCCTAAAAACGCCCCTCTTTTTTTCATGTTTTTCTCCATAGCACAATGATTCAGGAGAAAGCATGGTACAAATTGTCAGGAGCGCAAGTTGCTTCAGGCCGCGTGTGAGGCATCTTCCTCTTCGGATTCAGCACcgac                                                                                 <  2:1075642/289‑1 (MQ=255)
                                                                                                                                                                                         ccAACGCGCCACGCGATTTTGTTGATAATCACGTTTTACGCTCGCGGCAATTCCGGCAGCATCCAGATCTTCACACTTTGGGAAAGTGACCGACTTGCTGGTTTCATTATTGGCAGCGAAAACTGATGCGCAGGCAGAAACCAACAACAGCCCTAAAAACGCCCCTCTTTTTTTCATGTTTTTCTCCATAGCACAATGATTCAGGAGAAAGCATGGTACAAATTGTCAGGAGCGCAAGTTGCTTCAGGCCGCGTGTGAGGCATCTTCCTCTTCGGATTCAGCACcgac                                                                                 <  1:3161798/288‑1 (MQ=255)
                                                                                                                                                                                             cgcgCCACGCGATTTTGTTGATAATCACGTTTTACGCTCGCGGCAATTCCGGCAGCATCCAGATCTTCACACTTTGGGAAAGTGACCGACTTGCTGGTTTCATTATTGGCAGCGAAAACTGATGCGCAGGCAGAAACcaacaa                                                                                                                                                                                                                              <  2:2489377/143‑1 (MQ=255)
                                                                                                                                                                                             cgcgCCACGCGATTTTGTTGATAATCACGTTTTACGCTCGCGGCAATTCCGGCAGCATCCAGATCTTCACACTTTGGGAAAGTGACCGACTTGCTGGTTTCATTATTGGCAGCGAAAACTGATGCGCAGGCAGAAACcaacaa                                                                                                                                                                                                                              >  1:2489377/1‑143 (MQ=255)
                                                                                                                                                                                             cgcgCCACGCGATTTTGTTGATAATCACGTTTTACGCTCGCGGCAATTCCGGCAGCATCCAGATCTTCACACTTTGGGAAAGTGACCGACTTGCTGGTTTCATTATTGGCAGCGAAAACTGATGCGCAGGCAGAAACCAACAACAGCCCTAAAAACGCCCCTCTTTTTTTCATGTTTTTCTCCATAGCACaa                                                                                                                                                                             <  1:2512556/192‑1 (MQ=255)
                                                                                                                                                                                               cgcCACGCGATTTTGTTGATAATCACGTTTTACGCTCGCGGCAATTCCGGCAGCATCCAGATCTTCACACTTTGGGAAAGTGACCGACTTGCTGGTTTCATTATTGGCAGCGAAAACTGATGCGCAGGCAGAAACCAACAACAGCCCTAAAAACGCCCCTCTTTTTTTCATGTTTTTCTCCATAGCACAATGATTCAGGAGAAAGCATGGTACAAATTGTCAGGAGCGCAAGTTGCTTCAGGCCGCGTGTGAGGCATCTTCCTCTTCGGATTCAGCACCGACGACCtgt                                                                          >  1:1818690/1‑289 (MQ=255)
                                                                                                                                                                                                gcCACGCGATTTTGTTGATAATCACGTTTTACGCTCGCGGCAATTCCGGCAGCATCCAGATCTTCACACGTTGGGAAAGTGACCGACTTGCTGGTTTCATTATTGGCAGCGAAAACTGATGCGCAGGCAGAAACCAACAACAGCCCTAAAAACGCCCCTCTTTTTTTCATGTTTTTCTCCATAGCACAATGATTCAGGAGAAAGCATGGTACAAATTGTCAGGAGCGCAAGTTGCTTCAGGCCGCGTGTGAGGCATCTTCCTCTTCGGATTCAGCACCGACGACCtgtg                                                                         <  1:1609062/289‑1 (MQ=255)
                                                                                                                                                                                                  cACGCGATTTTGTTGATAATCACGTTTTACGCTCGCGGCAATTCCGGCAGCATCCAGATCTTCACACTTTGGGAAAGTGACCGACTTGCTGGTTTCATTATTGGCAGCGAAAACTGATGCGCAGGCAGAAACCAACAACAGCCCTAAAAACGCCCCTCTTTTTTTCATGttttt                                                                                                                                                                                          >  2:2184628/1‑174 (MQ=255)
                                                                                                                                                                                                  cACGCGATTTTGTTGATAATCACGTTTTACGCTCGCGGCAATTCCGGCAGCATCCAGATCTTCACACTTTGGGAAAGTGACCGACTTGCTGGTTTCATTATTGGCAGCGAAAACTGATGCGCAGGCAGAAACCAACAACAGCCCTAAAAACGCCCCTCTTTTTTTCATGTTTTtctc                                                                                                                                                                                       >  1:1073841/1‑177 (MQ=255)
                                                                                                                                                                                                  cACGCGATTTTGTTGATAATCACGTTTTACGCTCGCGGCAATTCCGGCAGCATCCAGATCTTCACACTTTGGGAAAGTGACCGACTTGCTGGTTTCATTATTGGCAGCGAAAACTGATGCGCAGGCAGAAACCAACAACAGCCCTAAAAACGCCCCTCTTTTTTTCATGTTTTTCTCCATAGCACAATGATTCAGgaga                                                                                                                                                                 <  2:1968516/199‑1 (MQ=255)
                                                                                                                                                                                                  cACGCGATTTTGTTGATAATCACGTTTTACGCTCGCGGCAATTCCGGCAGCATCCAGATCTTCACACTTTGGGAAAGTGACCGACTTGCTGGTTTCATTATTGGCAGCGAAAACTGATGCGCAGGCAGAAACCAACAACAGCCCTAAAAACGCCCCTCTTTTTTTCATGTTTTTCTCCATAGCACAATGATTCAGGAGAAAGCAt                                                                                                                                                           >  1:1652243/1‑205 (MQ=255)
                                                                                                                                                                                                  cACGCGATTTTGTTGATAATCACGTTTTACGCTCGCGGCAATTCCGGCAGCATCCAGATCTTCACACTTTGGGAAAGTGACCGACTTGCTGGTTTCATTATTGGCAGCGAAAACTGATGCGCAGGCAGAAACCAACAACAGCCCTAAAAACGCCCCTCTTTTTTTCATGTTTTTCTCCATAGCACAATGATTCAGGAGAAAGCATGGTACAAATTGTCAGGAGCGCAAGTTGCTTCAGGCCGCGTGTGAGGCATCTTCCTCTTCGGATTCAGCACcgac                                                                                 >  2:1176197/1‑279 (MQ=255)
                                                                                                                                                                                                  cACGCGATTTTGTTGATAATCACGTTTTACGCTCGCGGCAATTCCGGCAGCATCCAGATCTTCACACTTTGGGAAAGTGACCGACTTGCTGGTTTCATTATTGGCAGCGAAAACTGATGCGCAGGCAGAAACCAACAACAGCCCTAAAAACGCCCCTCTTTTTTTCATGTTTTTCTCCATAGCACAATGATTCAGGAGAAAGCATGGTACAAATTGTCAGGAGCGCAAGTTGCTTCAGGCCGCGTGTGAGGAATCTTCCTCTACGGATTCAGCACCCACGACCTGTggt                                                                       >  2:515124/1‑288 (MQ=255)
                                                                                                                                                                                                  cACGCGATTTTGTTGATAATCACGTTTTACGCTCGCGGCAATTCCGGCAGCATCCAGATCTTCACACTTTGGGAAAGTGACCGACTTGCTGGTTTCATTATTGGCAGCGAAAACTGATGCGCAGGCAGAAACCAACAACAGCCCTAAAAACGCCCCTCTTTTTTTCATGTTTTTCTCCATAGCACAATGATTCAGGAGAAAGCATGGTACAAATTGTCAGGAGCGCAAGTTGCTTCAGGCCGCGGTTGAGGCATCTTCCTCTTCGGATTCAGCACCGCCGACCTGgggg                                                                       >  2:2224073/1‑289 (MQ=255)
                                                                                                                                                                                                    cgcgATTTTTTTGATAATCACGTTTTACGCTCGCGGCAATTCCGGCAGCATCCAGATCTTCACACTTTGGGAAAGTGACCGACTTGCTGGTTTCATTATTGGCAGCGAAAACTGATGCGCAGGCAGAAACCAACAACAGCCCTAAAAACGCCCCTCTTTTTTTCATGTTTTTCTCCATAGCACAATGATTCAGGAGAAAGCATGGTACAAATTGTCAGGAGCGCAAGTTGCTTCAGGCCGCGTGTGAGGCATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGa                                                                     <  2:2056844/289‑1 (MQ=255)
                                                                                                                                                                                                                 atcacacgctcttAAGCTCGCGGCAATTCCGGCAGCATCCAGATCTTCACACTATGGGAAAGTGACCGACTTGCTGGTTTCATTATGGGCAGCGAAAACTGATGCGCAGGCAGAAACCAACAACAGCCCTAAAAACGCCCCTCTTTTTTTCATGTTTTTCTCCATAGCACAATGATTCAGGAGAAAGCATGGTACAAATTGTCAGGAGCGCAAGTTGCTTCAGGCCGCGTGTGAGGCATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCg                                                        <  2:2805750/278‑1 (MQ=255)
                                                                                                                                                                                                                   aaTCACGTTTTACGCTCGCGGCAATTCCGGCAGCATCCAGATCTTCACACTTTGGGAAAGTGACCGACTTGCTGGTTTCATTATTGGCAGCGAAAACTGATGCGCAGGCAGAAACCAACAACAGCCCTAAAAACGCCCCTCTTTTTTTCATGTTTTTCTCCATAGCACAATGATTCAGGAGAAAGCATGGTACAAATTGTCAGGAGCGCAAGTTGCTTCAGGCCGCGTGTGAGGCATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGt                                                      >  1:2071527/1‑289 (MQ=255)
                                                                                                                                                                                                                     tCACGTTTTACGCTCGCGGCAATTCCGGCAGCATCCAGATCTTCACACTTTGGGAAAGTGACCGACTTGCTGGTTTCATTATTGGCAGCGAAAACTGATGCGCAGGCAGAAACCAACAACAGCCCTAAAAACGCCCCTCTTTTTTTCATGTTTTTCTCCATAGCACAATGATTCAGGCGAAAGCATGGTACAAATTGTTAGGAGCGCAAGTTGCTTCAGGCCGCGTGTGAGGCATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCGTGttt                                                    >  1:1977747/1‑289 (MQ=255)
                                                                                                                                                                                                                      cACGTTTTACGCTCGCGGCAATTCCGGCAGCATCCAGATCTTCACACTTTGGGAAAGTGACCGACTTGCTGGTTTCATTATTGGCAGCGAAAACTGATGCGCAGGCAGAAACCAACAACAGCCCTAAAAACGCCCCTCTTTTTTTCATGTTTTTCTCCATAGCACAATGATTCAGGAGAAAGCATGGTACAAATTGTCAGGAGCGCAAGTTGCTTCAGGCCGCGTGTGAGGCATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGtttt                                                   <  1:2444206/289‑1 (MQ=255)
                                                                                                                                                                                                                        cGTTTTACGCTCGCGGCAATTCCGGCAGCATCCAGATCTTCACACTTTGGGAAAGTGACCGACTTGCTGGTTTCATTATTGGCAGCGAAAACTGATGCGCAGGCAGAAACCAACAACAGCCCTAAAAACGCCCCTCTTTTTTTCATGTTTTTCTCCATAGCACAATGATTCAGGAGAAAGCATGGTACAAATTGTCAGGAGCGCAAGTTGCTTCAGGCCGCGTGTGAGGCATCTTCCTCTTCGGATTCAGCCCCGACGACCTGTGGGGACGGTACTTTGCCGGTTTTCa                                                 >  1:665564/1‑289 (MQ=255)
                                                                                                                                                                                                                          ttttACGCTCGCGGCAATTCCGGCAGCATCCAGATCTTCACACTTTGGGAAAGTGACCGACTTGCTGGTTTCATTATTGGCAGCGAAAACTGATGCGCAGGCAGAAACCAACAACAGCCCTAAAAACGCCCCTCTTTTTTTCATGTTTTTCTCCATAGCACAATGATTCAGGAGAAAGCATGGTACAAATTGTCAGGAGCGCAAGTTGCTTCAGGCCGCGTGTGAGGCATCTTCctct                                                                                                  <  1:1257801/238‑1 (MQ=255)
                                                                                                                                                                                                                           tttACGCTCGCGGCGATTCCGGCAGCATCCAGATCTTCACACTTTGGGAAAGTGACCGACTTGCTGGTTTCATTATTGGCAGCGAAAACTGATGCGCAGGCAGAAACCAACAACAGCCCTAAAAACGCCCCTCTTTTTTTCATGTTTTTCTCCATAGCACAATGATTCAGGAGAAAGCATGGTACAAATTGTCAGGAGCGCAAGTGGCTTCAGGCCGCGTGTGAGGCATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGaa                                              <  1:3049167/289‑1 (MQ=255)
                                                                                                                                                                                                                           tttACGCTCGCGGCAATTCCGGCAGCATCCAGATCTTCACACTTTGGGAAAGTGACCGACTTGCTGGTTTCATTATTGGCAGCGAAAACTGATGCGCAGGCAGAAACCAACAACAGCCCTAAAAACGCCCCTCTTTTTTTCATGTTTTTCTCCATAGCACAATGATTCAGGAGAAAGCATGGTACAAATTGTCAGGAGCGCAAg                                                                                                                                   <  1:3309419/204‑1 (MQ=255)
                                                                                                                                                                                                                             tACGCTCGCGGCAATTCCGGCAGCATCCAGATCTTCACACTTTGGGAAAGTGACCGACTTGCTGGTTTCATTATTGGCAGCGAAAACTGATGCGCAGGCAGAAACCAACAACAGCCCTAAAAACGCCCCTCTTTTTTTCATGTTTTTCTCCATAGCACAATGATTCAGga                                                                                                                                                                   >  1:355115/1‑170 (MQ=255)
                                                                                                                                                                                                                             tACGCTCGCGGCAATTCCGGCAGCATCCAGATCTTCACACTTTGGGAAAGTGACCGACTTGCTGGTTTCATTATTGGCAGCGAAAACTGATGCGCAGGCAGAAACCAACAACAGCCCTAAAAACGCCCCTCTTTTTTTCATGTTTTTCTCCATAGCACAATGATTCAGGAGAAAGCATGGTACAAATTGTCAGGAGCGCAAGTTGCTTCAGGCCGCGTGTGAGGCATCTTcc                                                                                                     >  1:2201005/1‑232 (MQ=255)
                                                                                                                                                                                                                             tACGCTCGCGGCAATTCCGGCAGCATCCAGATCTTCACACTTTGGGAAAGTGACCGACTTGCTGGTTTCATTATTGGCAGCGAAAACTGATGCGCAGGCAGAAACCAACAACAGCCCTAAAAACGCCCCTCTTTTTTTCATGTTTTTCTCCATAGCACAATGATTCAGGAGAAAGCATGGTACAAATTGTCAGGAGCGCAAGTTGCTTCAGGCCGCGTGTGAGGCATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATg                                            <  2:2308765/289‑1 (MQ=255)
                                                                                                                                                                                                                               cGCTCGCGGCAATTCCGGCAGCATCCAGATCTTCACACTTTGGGAAAGTGACCGACTTGCTGGTTTCATTATTGGCAGCGAAAACTGATGCGCAGGCAGAAACCAACAACAGCCCTAAAAACGCCCCTCTTTTTTTCATGTTTTTCTCCATAGCACAATGATTCAGGAGAAAGCATGGTACAAATTGTCAGGAGCGCAAGTTGCTTCAGGCCGCGTGTGAGGCATCTTCCTCTTCGGATTCAGCACCGACGACCTGTggg                                                                       >  2:753452/1‑260 (MQ=255)
                                                                                                                                                                                                                                gCTCGCGGCAATTCCGGCAGCATCCAGATCTTCACACTTTGGGAAAGTGACCGACTTGCTGGTTTCATTATTGGCAGCGAAAACTGATGCGCAGGCAGAAACCAACAACAGCCCTAAAAACGCCCCTCTTTTTTTCATGTTTTTCTCCATAGCACAATGATTCAGGAGAAAGCATGGTACAAATTGTCAGGAGCGCAAGTTGCTTCAGGCCGCGTGTGAGGCATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGTg                                         <  2:3208367/289‑1 (MQ=255)
                                                                                                                                                                                                                                  tctcgGCAATTCCGGCAGCATCCAGATCTTCACACTTTGGGAAAGTGACCGACTTGCTGGTTTCATTATTGGCAGCGAAAACTGATGCGCAGGCAGAAACCAACAACAGCCCTAAAAACGCCCCTCTTTTTTTCATGTTTTTCTCCATAGCACAATGATTCAGGAGAAAGCATGGTACAAATTGTCAGGAGCGCAAGTTGCTTCAGGCCGCGTGTGAGGCATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGTGCt                                       <  2:1718791/286‑1 (MQ=255)
                                                                                                                                                                                                                                   cgcgGCAATTCCGGCAGCATCCAGATCTTCACACTTTGGGAAAGTGACCGACTTGCTGGTTTCATTATTGGCAGCGAAAACTGATGCGCAGGCAGAAACCAACAACAGCCCTAAAAACGCCCCTCTTTTTTTCATGTTTTTCTCCATAGCACAATGATTCAGGAGAAAGCATGGTAc                                                                                                                                                      >  2:3111176/1‑177 (MQ=255)
                                                                                                                                                                                                                                   cgcgGCAATTCCGGCAGCATCCAGATCTTCACACTTTGGGAAAGTGACCGACTTGCTGGTTTCATTATTGGCAGCGAAAACTGATGCGCAGGCAGAAACCAACAACAGCCCTAAAAACGCCCCTCTTTTTTTCATGTTTTTCTCCATAGCACAATGATTCAGGAGAAAGCATGGTAc                                                                                                                                                      <  1:3111176/177‑1 (MQ=255)
                                                                                                                                                                                                                                   cgcgGCAATTCCGGCAGCATCCAGATCTTCACACTTTGGGAAAGTGACCGACTTGCTGGTTTCATTATTGGCAGCGAAAACTGATGCGCAGGCAGAAACCAACAACAGCCCTAAAAACGCCCCTCTTTTTTTCATGTTTTTCTCCATAGCACAATGATTCAGGAGAAAGCATGGTACAAATTGTCAGGAGCGCAAGTTGCTTCAGGCCGCGTGTGAGGCATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGTGCTc                                      >  2:1040888/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                cacaCTTTGGGAAAGTGACCGACTTGCTGGTTTCATTATTGGCAGCGAAAACTGATGCGCAGGCAGAAACCAACAACAGCCCTAAAAACGCCCCTCTTTTTTTCATGTTTTTCTCCa                                                                                                                                                                                     <  1:1222033/117‑1 (MQ=255)
                                                                                                                                                                                                                                                                cacaCTTTGGGAAAGTGACCGACTTGCTGGTTTCATTATTGGCAGCGAAAACTGATGCGCAGGCAGAAACCAACAACAGCCCTAAAAACGCCCCTCTTTTTTTCATGTTTTTCTCCATAGCACAATGAtt                                                                                                                                                                        <  2:1634832/130‑1 (MQ=255)
                                                                                                                                                                                                                                                                cacaCTTTGGGAAAGTGACCGACTTGCTGGTTTCATTATTGGCAGCGAAAACTGATGCGCAGGCAGAAACCAACAACAGCCCTAAAAACGCCCCTCTTTTTTTCATGTTTTTCTCCATAGCACAATGATTCAGGAGAAAGCATGGTACAAATTGTCAGGAgcg                                                                                                                                       >  1:1964499/1‑163 (MQ=255)
                                                                                                                                                                                                                                                                cacaCTTTGGGAAAGTGACCGACTTGCTGGTTTCATTATTGGCAGCGAAAACTGATGCGCAGGCAGAAACCAACAACAGCCCTAAAAACGCCCCTCTTTTTTTCATGTTTTTCTCCATAGCACAATGATTCAGGAGAAAGCATGGTACAAATTGTCAGGAGCGCAAGTTGCTTCAGGCCGCGTGTGAGGCATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGTGCTCAGCACATCTTTTTGTTCTGCCAGCCATa          >  1:237620/1‑288 (MQ=255)
                                                                                                                                                                                                                                                                   acTTTGGGAAAGTGACCGACTTGCTGGTTTCATTATTGGCAGCGAAAACTGATGCGCAGGCAGAAACCAACAACAGCCCTAAAAACGCCCCTCTTTTTTTCATGTTTTTCTCCATAGCACAATGATTCAGGAGAAAGCATGGTACAAATTGTCAGGAGCGCAAGTTGCTTCAGGCCGCGTGTGAGGCATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGTGCTCAGCACATCTTTTTGTTCTGCCAGCCATAgcga      <  1:729101/289‑4 (MQ=255)
                                                                                                                                                                                                                                                                     tttGGGAAAGTGACCGACTTGCTGGTTTCATTATTGGCAGCGAAAACTGATGCGCAGGCAGAAACCAACAACAGCCCTAAAAACGCCCCTCTTTTTTTCATGTTTTTCTCCATAGCACAATGATTCAGGAGAAAGCATGGTACAAATTGTCAGGAGCGCAAGTTGCTTCAGGCCGCGTGTGAGGCATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGTGCTCAGCACATCTTTTTGtt                      >  1:363826/1‑271 (MQ=255)
                                                                                                                                                                                                                                                                       tGGGAAAGTGACCGACTTGCTGGTTTCATTATTGGCAGCGAAAACTGATGCgcagg                                                                                                                                                                                                                                           >  1:3213406/1‑56 (MQ=255)
                                                                                                                                                                                                                                                                       tGGGAAAGTGACCGACTTGCTGGTTTCATTATTGGCAGCGAAAACTGATGCGCAGGCAGAAACCAACAACAGCCCTAAAAACGCCCCTCTTTTTTTCATGTTTTTCTCCATAGCACAATGATTCAGGAGAAAGCATGGTACAAATTGTCAGGAGCGCAAGTTGCTTCAGGCCGCGTGTGAGGCATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTTCCGGTTTTCAGAATGGTGCTCAGCACATCTTTTTGTTCTGCCAGCCATAgcgaaagg  >  1:1178682/1‑282 (MQ=255)
                                                                                                                                                                                                                                                                                   |||                                                                                                                                                                                                                                                                                  
AGCCATTAACGCCGCTGATATTCCGCCATTCCCGCTTTGCAGTCCACGCTGACCTGGTAATGAATATCGGCACTTTTACCACGCACGGTTAGCGGTACACTCCATTTATCATCTTTACCCTGAATGTCCTGCAAACTGACCCAAGCCACGGGATCGGCCTGACCGACAATTTTTTGATCATCTGCCCAACGCGCCACGCGATTTTGTTGATAATCACGTTTTACGCTCGCGGCAATTCCGGCAGCATCCAGATCTTCACACTTTGGGAAAGTGACGCTCTTGCTGGTTTCATTATTGGCAGCGAAAACACTTGCGCAGGCAGAAACCAACAACAGCCCTAAAAACGCCCCTCTTTTTTTCATGTTTTTCTCCATAGCACAATGATTCAGGAGAAAGCATGGTACAAATTGTCAGGAGCGCAAGTTGCTTCAGGCCGCGTGACTGGCATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGTGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGGCTAAGG  >  CP042583/1610748‑1611299

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A