Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A4 F210 I1 R1 4930 262.8 3829204 96.6% 3699011 272.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA CP042583 1,495,857 3 bp→TCA intergenic (–/–) – / – –/–

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0425831,495,8570AT98.5% 481.0 / ‑5.3 204intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base A (0/0);  major base T (101/100);  minor base G (1/2);  total (102/102)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*CP0425831,495,8580GC98.5% 477.5 / NA 204intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base G (0/0);  major base C (101/100);  minor base A (1/2);  total (102/102)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*CP0425831,495,8590TA99.5% 486.5 / NA 204intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base T (0/0);  major base A (102/101);  minor base C (0/1);  total (102/102)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 204 total aligned reads displayed.

ATAATCTGGCGGTTTTGCTGGCGGAGCGGTTTCTTCATTACTGGCTTCACTAAACGCATATTAAAAATCAGAAAAACTGTAGTTTAGCCGATTTAGCCCCTGTACGTCCCGCTTTGCGTGTATTTCATAACACCGTTTCCAGAATAGTCTCCGAAGCGGGATCTGGCTGGTGGTCTATAGTTAGAGAGTTTTTTGACCAAAACAGCGGCCCTTTCAGTAATAAATTAAGGAGACGAGTTCAATGAGCCAACATAACGAAAAGAACCCACATCAGCACCAGAGTCCACTACACGATTCCAGCGAAGCGAAACCGGGGATGGACAGTCTGGCACCTGAGGACGGCTCTCATCGTCCAGCGGCTGAACCAACACCGCCAGGTGCACAACCTACCGCCCCAGGGAGCCTGAAAGCCCCTGATACGCGTAACGAAAAACTTAATTCTCTGGAAGACGTACGCAAAGGCAGTGAAAATTATGCGCTGACCACTAATCAGGGCGTGCGCATCGCCGACGATCAAAACAGTCTGCGTGCCGGTAGCCGTGGTCCAACGCTGCTGGA  >  CP042583/1495577‑1496134
                                                                                                                                                                                                                                                                                        |||                                                                                                                                                                                                                                                                                   
ataatCTGGCGGTTTTGCTGGCGGAGCGGTTTCTTCATTACTGGCTTCACTAAACGCATATTAAAAATCAGAAAAACTGTAGTTTAGCCGATTTAGCCCCTGTACGTCCCGCTTTGCGTGTATTTCATAACACCGTTTCCAGAATAGTCTCCGAAGCGGGATCTGGCTGGTGGTCTATAGTTAGAGAGTTTTTTGACCAAAACAGCGGCCCTTTCAGTAATAAATTAAGGAGACGAGTTCAATGTCGCAACATAACGAAAAGAACCCACATCAGCACCAGTCACCACTa                                                                                                                                                                                                                                                                               >  2:1241374/1‑289 (MQ=255)
ataatCTGGCGGTTTTGCTGGCGGAGCGGTTTCTTCATTACTGGCTTCACTAAACGCATATTAAAAATCAGAAAAACTGTAGTTTAGCCGATTTAGCCCCTGTACGTACCGCTTTGCGTGTATTTCATAACACCGTTTCCAGAATAGTCTCCGAAGCGGGATCTGGCTGGTGGTCTATAGTTACAGAGTTTTTTGACCAAAACAGCGGCCCTTTCAGTAATAAATTAGGGAGACGAGTTCAATGTCGCAACATAACGAACAGAACCAACATCAGCACCAGTCACCACTa                                                                                                                                                                                                                                                                               >  2:489368/1‑289 (MQ=255)
      tGGCGGTTTTGCTGGCGGAGCGGTTTCTTCATTACTGGCTTCACTAAACGCATATTAAAAATCAGAAAAACTGTAGTTTAGCCGATTTAGCCCCTGTACGTCCCGCTTTGCGTGTATTTCATAACACCGTTTCCAGAATAGTCTCCGAAGCGGGATCTGGCTGGTGGTCTATAGTTAGAGAGTTTTTTTACCAAAACAGCGGCACTTTCAGTAATAAATTAAGGAGACGAGTTCAATGTCGCAATATAACGAAAAGAACCCATATCAGCACCAGTCACCACTACCCGAt                                                                                                                                                                                                                                                                         >  2:1200441/1‑289 (MQ=255)
       ggCGGTTTTGCTGGCGGAGCGGTTTCTTCATTACTGGCTTCACTAAACGCATATTAAAAATCAGAAAAACTGTAGTTTAGCCGATTTAGCCCCTGTACGTCCCGCTTTGCGTGTATTTCATAACACCGTTTCCAGAATAGTCTCCGAAGCGGGATCTGGCTGGTGGTCTATAGTTAGAGAGTTTTTTGACCAAAACAGCGGCCCTTTCAGTAATAAATTAAGGAGACGAGTTCAATGTCGCAACATAACGAAAAGAACCCACATCAGCACCAGTCACCACTACACGAt                                                                                                                                                                                                                                                                         >  1:1180844/1‑288 (MQ=255)
       ggCGGTTTTGCTGGCGGAGCGGTTTCTTCATTACTGGCTTCACTAAACGCATATTAAAAATCAGAAAAACTGTAGTTTAGCCGATTTAGCCCCTGTACGTCCCGCTTTGCGTGTATTTCATAACACCGTTTCCAGAATAGTCTCCGAAGCGGGATCTGGCTGGTGGTCTATAGTTAGAGAGTTTTTTGACCAAAACAGCGGCCCTTTCAGTAATAAATTAAGGAGACGAGTTCAATGTCGCAACATAACGAAAAGAACCCACATCAGCACCAGTCACCACTACACGAt                                                                                                                                                                                                                                                                         >  1:1340179/1‑288 (MQ=255)
            ttttGCTGGCGGAGCGGTTTCTTCATTACTGGCTTCACTAAACGCATATTAAAAATCAGAAAAACTGTAGTTTAGCCGATTTAGCCCCTGTACGTCCCGCTTTGCGTGTATTTCATGACACCGTTTCCAGAATAGTCTCCGAAGCGGGATCTGGCTGGTGGTCTATAGTTAGAGAGTTTTTTGACCAAAACAGCGGCCCTTTCAGTAATAAATTAAGGAGACGAGTTCAATGTCGCAACATAACGAAAAGAACCCACATCAGCACCAGTCACCACTACACGATTCCag                                                                                                                                                                                                                                                                    <  2:200462/288‑1 (MQ=255)
            ttttGCTGGCGGAGCGGTTTCTTCATTACTGGCTTCACTAAACGCATATTAAAAATCAGAAAAACTGTAGTTTAGCCGATTTAGCCCCTGTACGTCCCGCTTTGCGTGTATTTCATAACACCGTTTCCAGAATAGTCTCCGAAGCGGGATCTGGCTGGTGGTCTATAGTTAGAGAGTTTTTTGACCAAAACAGCGGCCCTTTCAGTAATAAATTAAGGAGACGAGTTCAATGTCGCAACATAACGAAAAGAACCCACATCAGCACCAGTCACCACTACACGATTCCag                                                                                                                                                                                                                                                                    <  1:875060/288‑1 (MQ=255)
                      ggaggtgTTTCTTCATGACTGGCTTAACTAAACGAATAGTAAAAATCAGAAAAACTGTAGTTTAGGCGATGTAGCCCCTGTACGTCCCGCGTTGCGTGTATTTCATAACACCGTTTCAAGAATAGTCTCCGAAGCGGGATCTGGCTGGTGGTGTATAGTTAGAGAGTTTTTTGACCAAAACAGCGGCCCTTTAAGTAATAAATTAAGGAGACGAGTTCAATGTCGCAACATAACGAAAAGAACCCACATCAGCACCAGTCACCACTACACGATTCCAGCGAAGCGAAAc                                                                                                                                                                                                                                                         <  2:1099092/283‑1 (MQ=255)
                         gCGGTTTCTTCATTACTGGCTTCACTAAACGCATATTAAAAATCAGAAAAACTGTAGTTTAGCCGATTTAGCCCCTGTACGTCCCGCTTTGCGTGTATTTCATAACACCGTTTCCAGAATAGTCTCCGAAGCGGGATCTGGCTGGTGGTCTATAGTTAGAGAGTTTTTTGACCAAAACAGCGGCCCTTTCAGTAATAAATTAAGGAGACGAGTTCAATGTCGCAACATAACGAAAAGAACCCACATCAGCACCAGTCACCACTACACGATTCCAGCGAAGCGAAACCg                                                                                                                                                                                                                                                       <  1:1382952/288‑1 (MQ=255)
                             tttCTTCATTACTGGCTTCACTAAACGCATATTAAAAATCAGAAAAACTGTAGTTTAGCCGATTTAGCCCCTGTACGTCCCGCTTTGCGTGTATTTCATAACACCGTTTCCAGAATAGTCTCCGAAGCGGGATCTGGCTGGTGGTCTATAGTTAGAGAGTTTTTTGACCAAAACAGCGGCCCTTTCAGTAATAAATTAAGGAGACGAGTTCAATGTCGCAACATAACGAAAAGAACCCACATCAGCACCAGTCACCACTACACGATTCCAGCGAAGCGAAACCGGGGa                                                                                                                                                                                                                                                   <  1:1082447/288‑1 (MQ=255)
                                cttcATTACTGGCTTCACTAAACGCATATTAAAAATCAGAAAAACTGTAGTTTAGCCGATTTAGCCCCTGTACGTCCCGCTTTGCGTGTATTTCATAACACCGTTTCCAGAATAGTCTCCGAAGCGGGATCTGGCTGGTGGTCTATAGTTAGAGAGTTTTTTGACCAAAACAGCGGCCCTTTCAGTAATAAATTAAGGAGACGAGTTCAATGTCGCAACATAACGAAAAGAACCCACATCAGCACCAGTCACCACTACACGATTCCAGCGAAGCGAAACCGGGGATGGa                                                                                                                                                                                                                                               <  1:82111/289‑1 (MQ=255)
                                      tACTGGCTTCACTAAACGCATATTAAAAATCAGAAAAACTGTAGTTTAGCCGATTTAGCCCCTGTACGTCCCGCTTTGCGTGTATTTCATAACACCGTTTCCAGAATAGTCTCCGAAGCGGGATCTGGCTGGTGGTCTATAGTTAGAGAGTTTTTTGACCAAAACAGCGGCCCTTTCAGTAATAAATTAAGGAGACGAGTTCAATGTCGCAACATAACGAAAAGAACCCACATCAGCACCAGTCACCACTACACGATTCCAGCGAAGCGAAACCGGGGATGGActcact                                                                                                                                                                                                                                         <  1:254831/289‑6 (MQ=255)
                                      tACTGGCTTCACTAAACGCATATTAAAAATCAGAAAAACTGTAGTTTAGCCGATTTAGCCCCTGTACGTCCCGCTTTGCGTGTATTTCATAACACCGTTTCCAGAATAGTCTCCGAAGCGGGATCTGGCTGGTGGTCTATAGTTAGAGAGTTTTTTGACCAAAACAGCGGCCCTTTCAGTAATAAATTAAGGAGACGAGTTCAATGTCGCAACATAACGAAAAGAACCCACATCAGCACCAGTCACCACTACACGATTCCAGCGAAGCGAAACCGGGGATGGActc                                                                                                                                                                                                                                            >  1:91728/1‑284 (MQ=255)
                                        atGGCTTCACTAAAACCATATTAAAAATCACAAAAACTGTCGTTTCGCCGTTTTGGCCCCTGTACGTCCCGCTTTGCGTGTATTTCATAACACCGTTTCCAGAATAGTCTCCGAAGCTGGATCTGGCTGGTGGTCTATAGTTAGATAGTTTTTTGACCAAAACAGCGGCCCTTTCAGTAATAAATTAAGGAGACGAGTTCAATGTCGCAACATAACGAAAAGAACCCACATCAGCACCAGTCACCACTACACGATTCCAGCGAAGCGAAACCGGGGATGGActcactgg                                                                                                                                                                                                                                       <  2:871332/288‑8 (MQ=255)
                                           gCTTCACTAAACGCATATTAAAAATCAGAAAAACTGTAGTTTAGCCGATTTAGCCCCTGTACGTCCCGCTTTGCGTGTATTTCATAACACCGTTTCCAGAATAGTCTCCGAAGCGGGATCTGGCTGGTGGTCTATAGTTAGAGAGTTTTTTGACCAAAACAGCGGCCCTTTCAGTAATAAATTAAGGAGACGAGTTCAATGTCGCAACATAACGAAAAGAACCCACATCAGCACCAGTCACCACTACACGATTCCAGCGAAGCGAAACCGGGGAt                                                                                                                                                                                                                                                  <  1:411645/275‑1 (MQ=255)
                                           gCTTCACTAAACGCATATTAAAAATCAGAAAAACTGTAGTTTAGCCGATTTAGCCCCTGTACGTCCCGCTTTGCGTGTATTTCATAACACCGTTTCCAGAATAGTCTCCGAAGCGGGATCTGGCTGGTGGTCTATAGTTAGAGAGTTTTTTGACCAAAACAGCGGCCCTTTCAGTAATAAATTAAGGAGACGAGTTCAATGTCGCAACATAACGAAAAGAACCCACATCAGCACCAGTCACCACTACACGATTCCAGCGAAGCGAAACCGGGGAt                                                                                                                                                                                                                                                  >  2:411645/1‑275 (MQ=255)
                                             ttCACTAAACGCATATTAAAAATCAGAAAAGTTGTAGTTTAGCCGATTTAGCCCCTGTACGTCCCGCTTTGCGTGTATTTCATAACACCGTTTCCAGAATAGTCTCCGAAGCGGGATCTGGCTGGTGGTCTATATTTAGAGAGTTTTTTGACCAAAACAGCGGCCCTTTCAGTAATAAATTAAGGAGACGAGTTCAATGTCGCAACATAACGAAAAGAACCCACATCAGCACCAGTCACCACTACACGATTCCAGCGAAGCGAAACCGGGGATGGACTCACTGGCACCt                                                                                                                                                                                                                                  <  2:62343/289‑1 (MQ=255)
                                             ttCACTAAACGCATATTAAAAATCAGAAAAACTGTAGTTTAGCCGATTTAGCCCCTGTACGTCCCGCTTTGCGTGTATTTCATAACACCGTTTCCAGAATAGTCTCCGAAGCGGGATCTGGCTGGTGGTCTATAGTTAGAGAGTTTTTTGACCAAAACAGCGGCCCTTTCAGTAATAAATTAAGGAGACGAGTTCAATGTCGCAACATAACGAAAAGAACCCACATCAGCACCAGTCACCACTACACGATTCCAGCGAAGCGAAACCGGGGATGGACTCACTGGCa                                                                                                                                                                                                                                     >  1:732849/1‑286 (MQ=255)
                                                aCTAAACGCATATTAAAAATCAGAAAAACTGTAGTTTAGCCGATTTAGCCCCTGTACGTCCCGCTTTGCGTGTATTTCATAACACCGTTTCCAGAATAGTCTCCGAAGCGGGATCTGGCTGGTGGTCTATAGTTAGAGAGTTTTTTGACCAAAACAGCGGCCCTTTCAGTAATAAATTAAGGAGACGAGTTCAATGTCGCAACATAACGAAAAGAACCCACATCAGCACCAGTCACCACTACACGATTCCAGCGAAGCGAAACCGGGGATGGACTCACTGGCACCTGAg                                                                                                                                                                                                                               >  1:1889863/1‑289 (MQ=255)
                                                aCTAAACGCATATTAAAAATCAGAAAAACTGTAGTTTAGCCGATTTAGCCCCTGTACGTCCCGCTTTGCGTGTATTTCATAACACCGTTTCCAGAATAGTCTCCGAAGCGGGATCTGGCTGGTGGTCTATAGTTAGAGAGTTTTTTGACCAAAACAGCGGCCCTTTCAGTAATAAATTAAGGAGACGAGTTCAATGTCGCAACATAACGAAAAGAACCCACATCAGCACCAGTCACCACTACACGATTCCAGCGAAGCGAAACCGGGGACGGACTCACTGGCACCTGAg                                                                                                                                                                                                                               >  1:1707566/1‑289 (MQ=255)
                                                       gCATATTAAAAATCAGAAAAACTGTAGTTTAGCCGATTTAGCCCCTGTACGTCCCGCTTTGCGTGTATTTCATAACACCGTTTCCAGAATAGTCTCCGAAGCGGGATCTGGCTGGTGGTCTATAGTTAGAGAGTTTTTTGACCAAAACAGCGGCCCTTTCAGTAATAAATTAAGGAGACGAGTTCAATGTCGCAACATAACGAAAAGAACCCACATCAGCACCAGTCACCACTACACGATTCCAGCGAAGCGAAACCGGGGATGGACTCACTGGCACCTGAGGACGGct                                                                                                                                                                                                                        <  1:1241374/289‑1 (MQ=255)
                                                          tatTAAAAATCAGAAAAACTGTAGTTTAGCCGATTTAGCCCCTGTACGTCCCGCTTTGCGTGTATTTCATAACACCGTTTCCAGAATAGTCTCCGAAGCGGGATCTGGCTGGTGGTCTATAGTTAGAGAGTTTTTTGCCCAAAACAGCGGCCCTTTCAGTAATAAATTAAGGAGACGAGTTCAATTTCGCAACATAACGAAAAGAAACCACAACAGAACCAGTCACCAACACCCGACTCCCGCGAAGCGACACCGGGGATGCACTCACTGGCACCGCCGGACGGctct                                                                                                                                                                                                                      >  2:298901/1‑288 (MQ=255)
                                                          tatTAAAAATCAGAAAAACTGTAGTTTAGCCGATTTAGCCCCTGTACGTCCCGCTTTGCGTGTATTTCATAACACCGTTTCCAGAATAGTCTCCGAAGCGGGATCTGGCTGGTGGTCTATAGTTAGAGAGTTTTTTGACCAAAACAGCGGCCCTTTCAGTAATAAATTAAGGAGACGAGTTCAATGTCGCAACATAACGAAAAGAACCCACATCAGCACCAGTCACCACTACACGATTCCAGCGAAGCGAAACCGGGGATGGACTCACTGGCACCTGAGGACGGCtctc                                                                                                                                                                                                                     >  2:811765/1‑289 (MQ=255)
                                                           atTAAAAATCCGAAAAACTGTAGTTTAGCCGATTTAGCCCCTGTACGTCCCGCTTTGCGTGTATTTCATAACACCGTTTCCAGAATAGTCTCCGAAGCGGGATCTGGCTGGTGGTCTATAGTTAGAGAGTTTTTTGACCAAAACAGCGGCCCTTTCAGTAATAAATTAAGGAGACGAGTTCAATGTCGCAACATAACGAAAAGAACCCACATCAGCACCAGTCACCACTACACGATTCCAGCGAAGCGAAACCGGGGATGGACTCACTGGCACCTGAGGACGGCTCTCa                                                                                                                                                                                                                    <  2:160074/289‑1 (MQ=255)
                                                           atTAAAAATCAGAAAAACTGTAGTTTAGCCGATTTAGCCCCTGTACGTCCCGCTTTGCGTGTATTTCATAACACCGTTTCCAGAATAGTCTCCGAAGCGGGATCTGGCTGGTGGTCTATAGTTAGAGAGTTTTTTGACCAAAACAGCGGCCCTTTCAGTAATAAATTAAGGAGACGAGTTCAATGTCGCAACATAACGAAAAGAACCCACATCAGCACCAGTCACCACTACACGATTCCAGCGAAGCGAAACCGGGGATGGACTCACTGGCACCTGAGGACGGCTCTCa                                                                                                                                                                                                                    <  1:531434/289‑1 (MQ=255)
                                                            ttAAAAATCAGAAAAACTGTAGTTTAGCCGATTTAGCCCCTGTACGTCCCGCTTTGCGTGTATTTCATAACACCGTTTCCAGAATAGTCTCCGAAGCGGGATCTGGCTGGTGGTCTATAGTTAGAGAGTTTTTTGACCAAAACAGCGGCCCTTTCAGTAATAAATTAAGGAGACGAGTTCAATGTCGCAACATAACGAAAAGAACCCACATCAGCACCAGTCACCACTACACGATTCCAGCGAAGCGAAACCGGGGATGGACTCACTGGCACCTGAGGACGGCTCTCAt                                                                                                                                                                                                                   <  1:99260/289‑1 (MQ=255)
                                                                        aaaaCTGTAGTTTAGCCGATTTAGCCCCTGTACGTCCCGCTTTGCGTGTATTTCATAACACCGTTTCCAGAATAGTCTCCGAAGCGGGATCTGGCTGGTGGTCTATAGTTAGAGAGTTTTTTGACCAAAACAGCGGCCCTTTCAGTAATAAATTAAGGAGACGAGTTCAATGTCGCAACATAACGAAAAGAACCCACATCAGCACCAGTCACCACTACACGATTCCAGCGAAGCGAAACCGGGGATGGACTCACTGGCACCTGAGGACGGCTCTCATCGTCCAGCGGc                                                                                                                                                                                                        <  1:1661203/288‑1 (MQ=255)
                                                                                    tAGCCGATTTAGCCCCTGTACGTCCCGCTTTGCGTGTATTTCATAACACCGTTTCCAGAATAGTCTCCGAAGCGGGATCTGGCTGGTGGTCTATAGTTAGAGAGTTTTTTGACCAAAACAGCGGCCCTTTCAGTAATAAATTAAGGAGACGAGTTCAATGTCGCAACATAACGAAAAGAACCCACATCAGCACCAGTCACCACTACACGATTCCAGCGAAGCGAAACCGGGGATGGACTCACTGGCCACTGAGGACGGCCCTAATCTTCCAGCGGCTGAACCAaccac                                                                                                                                                                                            >  2:425936/1‑285 (MQ=255)
                                                                                      gCCGATTTAGCCCCTGTACGTCCCGCTTTGCGTGTATTTCATAACACCGTTTCCAGAATAGTCTCCGAAGCGGGATCTGGCTGGTGGTCTATAGTTAGAGAGTTTTTTGACCAAAACAGCGGCCCTTTCAGTAATAAATTAAGGAGACGAGTTCAATGTCGCAACATAACGAAAAGAACCCACATCAGCACCAGTCACCACTACACGATTCCAGCGAAGCGAAACCGGGGATGGACTCACCGGCCCCTGAGGACGGCTCCCATCGACCAGCGGCCTAAACAACCCCGc                                                                                                                                                                                          >  2:38128/1‑288 (MQ=255)
                                                                                      gCCGATTTAGCCCCTGTACGTCCCGCTTTGCGTGTATTTCATAACACCGTTTCCAGAATAGTCTCCGAAGCGGGATCTGGCTGGTGGTCTATAGTTAGAGAGTTTTTTGACCAAAACAGCGGCCCTTTCAGTAATAAATTAAGGAGACGAGTTCAATGTCGCAACATAACGAAAAGAACCCACATCAGCACCAGTCACCACTACACGATTCCAGCGAAGCGAAACCGGGGATGGACACACTGGCACCTGAGGACGGCGCTCATCGTCCAGCGGCTGAACCaaacacgc                                                                                                                                                                                          >  2:265556/1‑282 (MQ=255)
                                                                                       ccGATTTAGCCCCTGTACGTCCCGCTTTGCGTGTATTTCATAACACCGTTTCCAGAATAGTCTCCGAAGCGGGATCTGGCTGGTGGTCTATAGTTAGAGAGTTTTTTGACCAAAACAGCGGCCCTTTCAGTAATAAATTAAGGAGACGAGTTCAATGTCGCAACATAACGAAAAGAACCCACATCAGCACCAGTCACCACTACACGATTCCAGCGAAGCGAAACCGGGGATGGACTCACTGGCACCTGAGGACGGCTCTCATCGTCCAGCGGCTGAACCAACACCGcc                                                                                                                                                                                         <  2:705300/288‑1 (MQ=255)
                                                                                        cGATTTAGCCCCTGTACGTCCCGCTTTGCGTGTATTTCATAACACCGTTTCCAGAATAGTCTCCGAAGCGGGATCTGGCTGGTGGTCTATAGTTAGAGAGTTTTTTGACCAAAACAGCGGCCCTTTCAGTAATAAATTAAGGAGACGAGTTCAATGTCGCAACATAACGAAAAGAACCCACATCAGCACCAGTCACCACTACACGATTCCAGCGAAGCGAAACCGGGGATGGACTCACTGGCACCTGAGGACGGCTCTCATCGTCCAGCGGCTGAACCAACACCGcc                                                                                                                                                                                         <  1:624492/287‑1 (MQ=255)
                                                                                                 cccTGTACGTCCCGCTTTGCGTGTATTTCATAACACCGTTTCCAGAATAGTCTCCGAAGCGGGATCTGGCTGGTGGTCTATAGTTAGAGAGTTTTTTGACCAAAACAGCGGCCCTTTCAGTAATAAATTAAGGAGACGAGTTCAATGTCGCAACATAACGAAAAGAACCCACATCAGCACCAGTCACCACTACACGATTCCAGCGAAGCGAAACCGGGGATGGACTCACTGGCACCTGAGGACGGCTCTCATCGTCCAGCGGCTGAACCAACACCGCCAGGTGcaca                                                                                                                                                                                <  1:754368/287‑1 (MQ=255)
                                                                                                    tGTACGTCCCGCTTTGCGTGTATTTCATAACACCGTTTCCAGAATAGTCTCCGAAGCGGGATCTGGCTGGTGGTCTATAGTTAGAGAGTTTTTTGACCAAAACAGCGGCCCTTTCAGTAATAAATTAAGGAGACGAGTTCAATGTCGCAACATAACGAAAAGAACCCACATCAGCACCAGTCACCACTACACGATTCCAGCGAAGCGAAACCGGGGATGGACTCACTGGCACCTGAGGACTGCACGCATCGTCCAGCGGATGAAACAACACACCCACGTGCACAACCt                                                                                                                                                                            >  2:1738428/1‑288 (MQ=255)
                                                                                                    tGTACGTCCCGCTTTGCGTGTATTTCATAACACCGTTTCCAGAATAGTCTCCGAAGCGGGATCTGGCTGGTGGTCTATAGTTAGAGAGTTTTTTGACCAAAACAGCGGCCCTTTCAGTAATAAATTAAGGAGACGAGTTCAATGTCGCAACATAACGAAAAGAACCCACATCAGCACCAGTCACCACTACACGATTCCAGCGAAGCGAAACCGGGGATGGACTCACTGGCACCTGAGGACGGCTCTCATCGTCCAGCGGCTGAACCAACACCGCCAGGTGCACAACCTa                                                                                                                                                                           <  1:265556/289‑1 (MQ=255)
                                                                                                     gTACGTCCCGCTTTGCGTGTATTTCATAACACCGTTTCCAGAATAGTCTCCGAAGCGGGATCTGGCTGGTGGTCTATAGTTAGAGAGTTTTTTGACCAAAACAGCGGCCCTTTCAGTAATAAATTAAGGAGACGAGTTCAATGTCGCAACATAACGAAAAGAACCCACATCAGCACCAGTCACCACTACACGATTCCAGCGAAGCGAAACCGGGGATGGACTCACTGGCACCTGAGGACGGCTCTCGTCGTCCAGCGGCTGAACCAACACCGCCAGGTGCACAACCTa                                                                                                                                                                           >  2:520760/1‑288 (MQ=255)
                                                                                                     gTACGTCCCGCTTTGCGTGTATTTCATAACACCGTTTCCAGAATAGTCTCCGAAGCGGGATCTGGCTGGTGGTCTATAGTTAGAGAGTTTTTTGACCAAAACAGCGGCCCTTTCAGTAATAAATTAAGGAGACGAGTTCAATGTCGCAACATAACGAAAAGAACCCACATCAGCACCAGTCACCACTACACCATTCCAGCGAAGCGAAACCGGGGATGGACTCACTGGCACCTGAGGACGGCTCTCATCGTCCAGCGGCCGAACCAACACCCCCAGGTGCACCACCTa                                                                                                                                                                           >  2:1194571/1‑288 (MQ=255)
                                                                                                           cccGCTTTGCGTGTATTTCATAACACCGTTTCCAGAATAGTCTCCGAAGCGGGATCTGGCTGGTGGTCTATAGTTAGAGAGTTTTTTGACCAAAACAGCGGCCCTTTCAGTAATAAATTAAGGAGACGAGTTCAATGTCGCAACATAACGAAAAGAACCCACATCAGCACCAGTCACCACTACACGATTCCAGCGAAGCGAAACCGGGGATGGACTCACTGGCACCTGAGGACGGCTCTCATCGTCCAGCGGCTGAACCAACACCGCCAGGTGCACAACCTACCGcccc                                                                                                                                                                    >  1:526322/1‑289 (MQ=255)
                                                                                                           cccGCTTTGCGTGTATTTCATAACACCGTTTCCAGAATAGTCTCCGAAGCGGGATCTGGCTGGTGGTCTATAGTTAGAGAGTTTTTTGACCAAAACAGCGGCCCTTTCAGTAATAAATTAAGGAGACGAGTTCAATGTCGCAACATAACGAAAAGAACCCACATCAGCACCAGTCACCACTACACGATTCCAGCGAAGCGAAACCGGGGATGGACTCACTGGCACCTGAGGACGGCTCTCATCGTCCAGCGGCTGAACCAACACCGCCAGGTGCACAACCTACCGccc                                                                                                                                                                     >  1:1785100/1‑288 (MQ=255)
                                                                                                           cccGCTTTAGGTGTATTTCATAACACCGTTTCCAGACTAGTCTCCGAAGCGGGATCTGGCTGGTGGTCTATAGTTAGAGAGTTTTTTGACCAAAACAGCGGCCCTTTCAGTAATAAATTAAGGAGACGAGTTCAATGTCGCAACATAACGAAAAGAACCCACATCAGCACCAGTCACCACTACACGATTCCAGCGAAGCGAAACCGGGGATGGACTCACTGGCACCTGAGGACGGCTCTCATCGTCCAGCGGCTGAACCAACACCGCCAGGTGCACAACCTACCGccc                                                                                                                                                                     <  2:1693858/288‑1 (MQ=255)
                                                                                                               cTTTGCGTGTATTTCATAACACCGTTTCCAGAATAGTCTCCGAAGCGGGATCTGGCTGGTGGTCTATAGTTAGAGAGTTTTTTGACCAAAACAGCGGCCCTTTCAGTAATAAATTAAGGAGACGAGTTCAATGTCGCAACATAACGAAAAGAACCCACATCAGCACCAGTCACCACTACACGATTCCAGCGAAGCGAAACCGGGGATGGACTCACTGGCACCTGAGGACGGCTCTCATCGTCCAGCGGCTGAACCAACACCGCCAGGTGCACAACCTa                                                                                                                                                                           >  1:1665598/1‑278 (MQ=255)
                                                                                                                       gtATTTCAGAAGACCGTTTCCAGAATAGTATCCGAAGCGGGATATGGCTGGTGGTCTATAGTTAGAGAGTTTTTTGACCAAAACAGCGGCCCTTTCAGTAATAAATTAAGGAGACGAGTTCAATGTCGCAACATAACGAAAAGAACCCACATCAGCACCAGTCACCACTACACGATTCCAGCGACGCGAAACCGGGGATGGACTCACTGGCACCTGAGGACGGCTCTCATCGTCCAGCGGCTGAACCAACACCGCCAGGTGCACAACCTACCGCCCCAGGGAGCCTGaa                                                                                                                                                        <  2:1514806/289‑1 (MQ=255)
                                                                                                                            tCATAAAACCGTTTCCAGAATAGTCTACGAAGCGGGATCTGGCTGGTGGTCTATAGTTAGAGAGTTTTTTGACCAAAACAGCGGCCCTTTCAGTAATAAATTAAGGAGACGAGTTCAATATCGCAACATAACGAAAAGAACCCACATCAGCACCAGTCACCACTACACGATTCCAGCGAAGCGAAACCGGGGATGGACTCACTGGCACCTGAGGACGGCTCTCATCGTCCAGCGGCTGAACCAACACCGCCAGGTGCACAACCTACCGCCCCAGGGAGCCTGAAAGccc                                                                                                                                                   <  2:354796/289‑1 (MQ=255)
                                                                                                                              aTAACACCGTTTCCAGAATAGTCTCCGAAGCGGGATCTGGCTGGTGGTCTATAGTTAGAGAGTTTTTTGACCAAAACAGCGGCTCTTTCAGTAATAAATTAAGGAGACGAGTTCAATGTCGCAACATAACGAAAAGAACCCACATCAGCACCAGTCACCACTACACGATTCCAGCGAAGCGAAACCGGGGATGGACTCACTTGCATCAGAGGACGGCTCTCATCGTCCAGCGGCTGAACCAACACCGCCAGGCTCACAACCTACCCCCCCCGCGAGCCTGAAAGCCCCt                                                                                                                                                 >  2:940011/1‑289 (MQ=255)
                                                                                                                              aTAACACCGTTTCCAGAATAGTCTCCGAAGCGGGATCTGGCTGGTGGTCTATAGTTAGAGAGTTTTTTGACCAAAACAGCGGCCCTTTCAGTAATAAATTAAGGAGACGAGTTCAATGTCGCAACATAACGAAAAGAACCCACATCAGCACCAGTCACCACTACACGATTCCAGCGAAGCGAAACCGGGGATGGACTCACTGGCACCTGAGGACGGCTCTCATCGTCCAGCGGCTGAACCAACACCGCCAGGTGCACAACCTACCGCCCCAGGGAGCCTGAAAgac                                                                                                                                                    >  1:1257492/1‑284 (MQ=255)
                                                                                                                                     cGTTTCCAGAATAGTCTCCGAAGCGGGATCTGGCTGGTGGTATATAGTTAGAGAGCTTTTTGACCAAAACAGCGGCCCTTTCAGTAATAAATTAAGGAGACGAGTTCAATGTCGCAACATAACGAAAAGAACCCACATCAGCACCAGTAAACACTACACGATTCCAGCGAAGCGAAACCGGGGATGGACTCACTGGCACCTGAGGACGGCTCTCATCGTCCAGCGGCTGAACCAACACCGCCAGGTGCACAACCTTCCGCCCCAGGGAGCCTGAAGGCCCCTGATAcgc                                                                                                                                          >  1:113675/1‑289 (MQ=255)
                                                                                                                                       tttCCAGAATAGTCTCCGAAGCGGGATCTGGCTGGTGGTCTATAGTTAGAGAGTTTTTTGACCAAAACAGCGGCCCTTTCAGTAATAAATTAAGGAGACGAGTTCAATGTCGCAACATAACGAAAAGAACCCACATCAGCACCAGTCACCACTACACGATTCCAGCGAAGCGAAACCGGGGATGGACTCACTGGCACCTGAGGCCGGCTCTCATCGTCCAGCGGCTGACCCAAACCCGCCAGCTGCCCAACCTACCGCCCCCGGGAGCCCGCAATCCCCTGATAcgcg                                                                                                                                         >  2:600576/1‑288 (MQ=255)
                                                                                                                                                 aGTCTCCGAAGCGGGATCTGGCTGGTGGTCTATAGTTAGAGAGTTTTTTGACCAAAACAGCGGCCCTTTCAGTAATAAATTAAGGAGACGAGTTCAATGTCGCAACATAACGAAAAGAACCCACACCAGCACCAGTCACCACTACACGATTCCAGCGAAGCGAAACCGGGGATGGAGTCACTGGTACCTGAGGACGGCTCTCATCGTCCAGCGGCTGCACCAACACCGCCAGGTGCCCAACCTACCGCCCCAGGGAGTCTGAAAGCCCCTGAGACGCGTGAAGaaaac                                                                                                                               >  2:18367/1‑287 (MQ=255)
                                                                                                                                                   tctcCGAAGCGGGATCTGGCTGGTGGTCTATAGTTAGAGAGTTTTTTGACCAAAACAGCGGCCCTTTCAGTAATAAATTAAGGAGACGAGTTCAATGTCGCAACATAACGAAAAGAACCCACATCAGCACCAGTCACCACTACACGATTCCAGCGAAGCGAAACCGGGGATGGACTCACTGGCACCTGAGGACGGCTCTCATCGTCCAGCGGCTGAACCAACACCGCCAGGTGCACAACCTACCGCCCCAGGGAGCCTGAAAGCCCCTCATACGCGTAACGAAAAACtt                                                                                                                            >  2:1641575/1‑289 (MQ=255)
                                                                                                                                                   tctcCGAAGCGGGATCTGGCTGGTGGTCTATAGTTAGAGAGTTTTTTGACCAAAACAGCGGCCCTTTCAGTAATAAATTAAGGAGACGAGTTCAATGTCGCAACATAACGAAAAGAACCCACATCAGCACCAGTCACCACTACACGATTCCAGCGAAGCGAAACCGGGGATGGACTCACTGGCACCTGAGGACGGCTCTCATCGTCCAGCGGCTGAACCAACACCGCCAGGTGCACAACCTACCGCCCCAGGGAGCCTGAAACCCCCTGATACCGGGAACGAAAAACtt                                                                                                                            >  2:1900783/1‑289 (MQ=255)
                                                                                                                                                    ctcCGAAGCGGGATCTGGCTGGTGGTCTATAGTTAGAGAGTTTTTTGACCAAAACAGCGGCCCTTTCAGTAATAAATTAAGGAGACGAGTTCAATGTCGCAACATAACGAAAAGAACCCACATCAGCACCAGTCACCACTACACGATTCCAGCGAAGCGAAACCGGGGATGGACTCACTGGCACCTGAGGACGGCTCTCATCGTCCAGCGGCTGAACCAACACCGCCAGGTGCACAACCTACCGCCCCAGGGAGCCTGAAAGCCCCTGATACGCGTAACGAAAAACTTa                                                                                                                           <  1:1578168/289‑1 (MQ=255)
                                                                                                                                                       cGAAGCGGGATCTGGCTGGTGGTCTATAGTTAGAGAGTTTTTTGACCAAAACAGCGGCCCTTTCAGTAATAAATTAAGGAGACGAGTTCAATGTCGCAACATAACGAAAAGAACCCACATCAGCACCAGTCACCACTACACGATTCCAGCGAAGCGAAACCGGGGATGGACTCACTGGCACCTGAGGACGGCTCTCATCGTCCAGCGGCTGAACCAACACCGCCAGGTGCACAACCTACCGCCCCAGGGAGCCTGAAAGCCCCTGATACGCGTAACGAAAAACTTAAtt                                                                                                                        <  1:338318/289‑1 (MQ=255)
                                                                                                                                                        gAAGCGGGATCTGGCTGGTGGTCTATAGTTAGAGAGTTTTTTGACCAAAACAGCGGCCCTTTCAGTAATAAATTAAGGAGACGAGTTCAATGTCGCAACATAACGAAAAGAACCCACATCAGCACCAGTCACCACTACACGATTCCAGCGAAGCGAAACCGGGGATGGACTCACTGGCACCTGAGGACGGCTCTCATCGTCCAGCGGCTGAACCAACACCGCCAGGTGCACAACCTACCGCCCCAGGGAGCCTGAAAGCCCCTGATACGCGTAACGAAAAACTTAAtt                                                                                                                        >  2:1316647/1‑288 (MQ=255)
                                                                                                                                                        gAAGCGGGATCTGGCTGGTGGTCTATAGTTAGAGAGTTTTTTGACCAAAACAGCGGCCCTTTCAGTAATAAATTAAGGAGACGAGTTCAATGTCGCAACATAACGAAAAGAACCCACATCAGCACCAGTCACCACTACACGATTCCAGCGAAGCGAAACCGGGGATGGACTCACTGGCACCTGAGGACGGCTCTCATCGTCCAGCGGCTGAACCAACACCGCCAGGTGCACAACCTACCGCCCCAGGGAGCCTGAAAGCCCCTGATACGCGTAACGAAAAACTAAAt                                                                                                                         >  1:1293718/1‑287 (MQ=255)
                                                                                                                                                               gATCTGGCTGGTGGTCTATAGTTAGAGAGTTTTTTGACCAAAACAGCGGCCCTTTCAGTAATAAATTAAGGAGACGAGTTCAATGTCGCAACATAACGAAAAGAACCCACATCAGCACCAGTCACCACTACACGATTCCAGCGAAGCGAAACCGGGGATGGActcactgg                                                                                                                                                                                                                                       <  2:1090175/170‑8 (MQ=255)
                                                                                                                                                                   tggctggTGGTCTATAGTTAGAGAGTTTTTTGACCAAAACAGCGGCCCTTTCAGTAATAAATTAAGGAGACGAGTTCAATGTCGCAACATAACGAAAAGAACCCACATCAGCACCAGTCACCACTACACGATTCCAGCGAAGCGAAACCGGGGATGGACTCACTGGCACCTGAGGACGGCTCTCATCGTCCAGCGGCTGAACCAACACCGCCAGGTGCACAACCTACCGCCCCAGGGAGCCTGAAAGCCCCTGATACGCGTAACGAAAAACTTAATTCTCTGGAAGACg                                                                                                            <  2:732849/289‑1 (MQ=255)
                                                                                                                                                                   tggctggTGGTCTATAGTTAGAGAGTTTTTTGACCAAAACAGCGGCCCTTTCAGTAATAAATTAAGGAGACGAGTTCAATGTCGCAACATAACGAAAAGAACCCACATCAGCACCAGTCACCACTACACGATTCCAGCGAAGCGAAACCGGGGATGGACTCACTGGCACCTGAGGACGGCTCTCATCGTCCAGCGGCTGAACCAACACCGCCAGGTGCACAACCTACCGCCCCAGGGAGCCTGAAAGCCCCTGATACGCGTAACGAAAAACTTAATTCTCTGGAAGACg                                                                                                            >  1:284966/1‑289 (MQ=255)
                                                                                                                                                                   gtgctggTGGACTATAGTTAGAGAGTTTTTTTGCCGAAACAGAGGCACTGTCAGTAAGAACTAAAAGAGACGAATTAAATGTAGCAACAGAACGAAAAGAACCAACATCAGCACCAGGCACCGCTACACGATTCCAGCAAAGCGAAACCGGGGATGGACTCACGGGCACCTGAGGACGGCTCTCATCGTCCAGCGGCTGAACCAACACCGCCAGGTGCACAACCTACCGCCCCAGGGAGCCTGAAAGCCCCTGATACGCGTAACGAAAAACTTAATTCTCTGGAAGACg                                                                                                            <  2:1058231/287‑1 (MQ=255)
                                                                                                                                                                     gctggTGGTCTATAGTTAGAGAGTTTTTTGACAAAAACAGCGGCCCTTTCAGTAATAAATTAAGGAGACGAGTTCAATGTCGCAACATAACGAAAAGAACCCACATCAGCACCAGTCACCACTACACGATTCCAGCGAAGCGAAACCGGGGATGGACTCACTGGCACCTGAGGACGGCTCTCATCGTACAGCGGCTGAACCAACACCGCCAGGTGCACAACCTACCGCCCAAATGAACCTGAAAGCCCCTGATACGCGTACCGAAAAACTTAATTGTCTGGCAGACgaa                                                                                                          >  1:400371/1‑287 (MQ=255)
                                                                                                                                                                         gtggtCTATAGTTAGAGAGTTTTTTGACCAAAACAGCGGCCCTTTCAGTAATAAATTAAGGAGACGAGTTCAATGTCGCAACATAACGAAAAGAACCCACATCAGCACCAGTCACCACTACACGATTCCAGCGAAGCGAAACCGGGGATGGACTCACTGGCACCTGAGGACGGCTCCCATCGTCCAGCGGCTGAACCAACACCGCCAGGTGCACAACCTACCGCCCCCGGGAGCCTTAAAGCCCCTGATACGCGAAACGAAAAACTTAATTCTCTGGAAGACGTACGCa                                                                                                      >  2:1175970/1‑289 (MQ=255)
                                                                                                                                                                          tggtCTATAGTTAGAGAGTTTTTTGACCAAAACAGCGGCCCTTTCAGTAATAAATTAAGGAGACGAGTTCAATGTCGCAACATAACGAAAAGAACCCACATCAGCACCAGTCACCACTACACGATTCCAGCGAAGCGAAACCGGGGATGGACTCACTGGCACCTGAGGACGGCTCTCATCGTCCAGCGGCTGAACCAACACCGCCAGGTGCACAACCTACCGCCCCAGGGAGCCTGAAAGCCCCTGATACGCGTAACGAAAAACTTAATTCTCTGGAAGACGTACGCa                                                                                                      <  1:779039/288‑1 (MQ=255)
                                                                                                                                                                              cTATAGTTAGAGAGTTTTTTGACCAAAACAGCGGCCCTTTCAGTAATAAATTAAGGAGACGAGTTCAATGTCGCAACATAACGAAAAGAACCCACATCAGCACCAGTCACCACTACACGATTCCAGCGAAGCGAAACCGGGGATGGACTCACTGGCACCTGAGGACGGCTCTCATCGTCCAGCGGCTGAACCAACACCGCCAGGTGCACAACCTACCGCCCCAGGGAGCCTGAAAGCCCCTGATACGCGTAACGAAAAACTTAATTCTCTGGAAGACGTACGCAAAGGc                                                                                                 <  1:1090996/289‑1 (MQ=255)
                                                                                                                                                                               tataGTTAGAAAGTTTTATGACGATAAAAGCGGCCCTTTCAGTAATAAATTAAGGAGACGAATTCACTGGCGCAACATAACGAAAAGAACCCACATCAGCACCAGTCACCACTACACGATTCCAGCGAAGCGAAACCGGGGATGCACTCACCGGCACCTGAGGACGGCTCTCATCGTCCAGCGGCTGAACCAACACCTCCAGGTGCACAACCTACCGCCCCAGGGAGCCTGAAAGCCCCTGATACGCGTAACGAAAAACTTAATTCTCTGGAAGACGTACGCAAAGGCa                                                                                                <  2:529047/289‑1 (MQ=255)
                                                                                                                                                                                      agagagTTTTTTGACCAAAACAGCGGCCCTTTCAGTAATAAATTAAGGAGACGAGTTCAATGTCGCAACATAACGAAAAGAACCCACATCAGCACCAGTCACCACTACACGATTCCAGCGAAGCGAAACCGGGGATGGACTCACTGGCACCTGAGGACGGCTCTCATCGTCTCGCGGCTGAACCAACACCGCCAGGTGCACAACCTACCGCCCCAGGGAGCCTGAAAGCCCCTGATACGCGTAACGAAAAACTTAATTCCATGGAAGAACTACGCAAAGGCAGTGaaaa                                                                                         >  2:220691/1‑289 (MQ=255)
                                                                                                                                                                                      agagagTTTTTTGACCAAAACAGCGGCCCTTTCAGTAATAAATTAAGGAGACGAGTTCAATGTCGCAACATAACGAAAAGAACCCACATCAGCACCAGTCACCACTACACGATTCCAGCGAAGCGAAACCGGGGATGGACTCACTGGCACCTGAGGACGGCTCTCATCGTCCAGCGGCTGAACCAACACCGCCAGGTGCACAACCTACCGCCCCAGGGAGCCTGAAAGCCCCTGATACGCGTAACGAAAAACTTAATTCTCTGGAAGACGTACGCAAAGGCAGTGaaaa                                                                                         >  2:900430/1‑289 (MQ=255)
                                                                                                                                                                                       gagagTTTTTTGACCAAAACAGCGGCCCTTTCAGTAATAAATTAAGGAGACGAGTTCAATGTCGCAACATAACGAAAAGAACCCACATCAGCACCAGTCACCACTACACGATTCCAGCGAAGCGAAACCGGGGATGGACTCACTGGCACCTGAGGACGGCTCTCATCGTCCAGCGGCTGAACCAACACCGCCAGGTGCACAACCTACCGCCCCAGGGAGCCTGAAAGCCCCTGATACGCGTAACGAAAAACTTAATTCTCTGGAAGACGTACGCAAAGGCAGTGAAAAt                                                                                        >  2:140152/1‑289 (MQ=255)
                                                                                                                                                                                       gagagTTTTTTGACCAAAACAGCGGCCCTTTCAGTAATAAATTAAGGAGACGAGTTCAATGTCGCAACATAACGAAAAGAACCCACATCAGCACCAGTCACCACTACACGATTCCAGCGAAGCGAAACCGGGGATGGACTCACTGGCACCTGAGGACGGCTCTCATCGTCCAGCGGCTGAACCAACACCGCCAGGTGCACAACCTACCGCCCCAGGGAGCCTGAAAGCCCCTGATACGCGTAACGAAAAACTTAATTCTCTGGAAGACGTACGCAAAGGCAGTGAAAAt                                                                                        >  2:89132/1‑289 (MQ=255)
                                                                                                                                                                                        agagTTTTTTGACCAAAACAGCGGCCCTTTCAGTAATAAATTAAGGAGACGAGTTCAATGTCGCAACATAACGAAAAGAACCCACATCAGCACCAGTCACCACTACACGATTCCAGCGAAGCGAAACCGGGGATGGACTCACTGGCACCTGAGGa                                                                                                                                                                                                                             <  1:1125330/155‑1 (MQ=255)
                                                                                                                                                                                         gagTTTTTTGACCAAAACAGCGGCCCTTTCAGTAATAAATTAAGGAGACGAGTTCAATGTCGCAACATAACGAAAAGAACCCACATCAGCACCAGTCCCCGCTACACGATTCCAGCGAAGCGAAACCGGGGATGGACTCACTGGCACCTGAGGACGGCTCTCATCGTCCAGCGGCTGAACCAACACCGCCAGGTGCACAACCTACCGCCCCAGGGAGCCTGAAAGCCCCTGATACGCGTAACGAAAAACTTAATTCTCTGGAAGACGTACGCAAAGGCAGTGAAAAtt                                                                                       <  2:1665568/288‑1 (MQ=255)
                                                                                                                                                                                           gTTTTTTGACCAAAACAGCGGCCCTTTCAGTAATAAATTAAGGAGACGAGTTCAATGTCGCAACATAACGAAAAGAACCCACATCAGCACCAGTCACCACTACACGATTCCAGCGAAGCGAAACCGGGGATGGACTCACTGGCACCTGAGGACGGCTCTCATCGTCCAGCGGCTGAACCAACACCGCCAGGTGCACAACCTACCGCCCCAGGGAGCCTGAAAGCCCCTGATACGCGTAACGAAAAACTTAATTCTCTGGAAGACGTACGCAAAGGCAGTGAAAATTAt                                                                                     >  2:85086/1‑288 (MQ=255)
                                                                                                                                                                                            ttttttGACCAAAACAGCGGCCCTTTCAGTAATAAATTAAGGAGACGAGTTCAATGTCGCAACATAACGAAAAGAACCCACATCAGCACCAGTCACCACTACACGATTCCAGCGAAGCGAAACCGGGGATGGACTCACTGGCACCTGAGGACGGCTCTCATCGTCCAGCGGCTGAACCAACACCGCCAGGTGCACAACCTACCGCCCCAGGGAGCCTGAAAGCCCCTGATACGCGTAACGAAAAACTTAATTCTCTGGAAGACGTACGCAAAGGCAGTGAAAATTATgc                                                                                   >  1:16446/1‑289 (MQ=255)
                                                                                                                                                                                              ttttGACCAAAACAGCGGCCCTTTCAGTAATAAATTAAGGAGACGAGTTCAATGTCGCAACATAACGAAAAGAACCCACATCAGCACCAGTCACCACTACACGATTCCAGCGAAGCGAAACCGGGGATGGACTCACTGGCACCTGAGGACGGCTCTCATCGTCCAGCGGCTGAACCAACACCGCCAGGTGCACAACCTACCGCCCCAGGGAGCCTGAAAGCCCCTGATACGCGTAACGAAAAACTTAATTCTCTGGAAGACGTACGCAAAGGCAGTGAAAATTATgc                                                                                   >  2:969505/1‑287 (MQ=255)
                                                                                                                                                                                               tttGACCAAAACAGCGGCCCTTTCAGTAATAAATTAAGGAGACGAGTTCAATGTCGCAACATAACGAAAAGAACCCACATCAGCACCAGTCACCACTACACGATTCCAGCGAAGCGAAACCGGGGATGGACTCACTGGCACCTGAGGACGGCTCTCATCGTCCAGCGGCTGAACCAACACCGCCAGGTGCACAACCTACCGCCCCAGGGAGCCTGAAAGCCCCTGATACGCGTAACGAAAAACTTAATTCTCTGGAAGACGTACGCAAAGGCAGTGAAAATTATGCGCt                                                                                <  2:1785100/289‑1 (MQ=255)
                                                                                                                                                                                               tttGACCAAAACAGCGGCCCTTTCAGTAATAAATTAAGGAGACGAGTTCAATGTCGCAACATAACGAAAAGAACCCACATCAGCACCAGTCACCACTACACGATTCCAGCGAAGCGAAACCGGGGATGGACTCACTGGCACCTGAGGACGGCTCTCATCGTCCAGCGGCTGAACCAACACCGCCAGGTGCACAACCTACCGCCCCAGGGAGCCTGAAAGCCCCTGATACGCGTAACGAAAAACTTAATTCTCTGGAAGACGTACGCAAAGGCAGTGAAAATTATGCGCt                                                                                <  1:1628861/289‑1 (MQ=255)
                                                                                                                                                                                                   aCCAAAACAGCGGCCCTTTCAGTAATAAATTAAGGAGACGAGTTCAATGTCGCAACATAACGAAAAGAACCCACATCAGCACCAGTCACCACTACACGATTCCAGCGAAGCGAAACCGGGGATGGACTCACTGGCACCTGAGGACGGCTCTCATCGTCCAGCGGCTGAACCAACACCGCCAGGTGCACAACCTACCGCCCCAGGGAGCCTGAAAGCCCCTGATACGCGTAACGAAAAACTTAATTCTCTGGAAGACGTACGCAAAGGCAGTGAAAATTATGCGCTGAcc                                                                            <  2:526322/289‑1 (MQ=255)
                                                                                                                                                                                                    ccAAAACAGCGGCCCTTTACATAATAAAATAAGGAGACGAGTTCAATGTCGCAACATAACGAAAAGAACCCACATCAGCACCAGTCACCACTACACGATTCCAGCGAAGCGAAACCGGGGATGGACTCACTGGCACCTGAGGACGGCTCTCATCGTCCAGCGGCTGAAACAACACCGCCAGGTGCACAACCTACCGCCCCAGGGAGCCTGAAAGCCCCTGATACGCGTAACGAAAAACTTAATTCTCTGGAAGACGTACGCAAAGGCAGTGAAAATTATGCGCTGAcc                                                                            <  2:1532675/288‑1 (MQ=255)
                                                                                                                                                                                                     cAAAACAGCGGCCCTTTCAGTAATAAATTAAGGAGACGAGTTCAATGTCGCAACATAACGAAAAGAACCCACATCAGCACCAGTCACCACTACACGATTCCAGCGAAGCGAAACCGGGGATGGACTCACTGGCACCTGAGGACGGCTCTCATCGTCCAGCGGCTGAACCAACACCGCCAGGTGCACAACCTACCGCCCCAGGGAGCCTGAAAGCCCCTGATACGCGTAACGAAAAACTTAATTCTCTGGAAGACGTACGCAAAGGCAGTGAAAATTATGCGCTGACCAc                                                                          <  2:721701/289‑1 (MQ=255)
                                                                                                                                                                                                              ggCCCTTTCAGTAATAAATTAAGGAGACGAGTTCAATGTCGCAACATAACGAAAAGAACCCACATCAGCACCAGTCACCACTACACGATTCCAGCGAAGCGAAACCGGGGATGGACTCACTGGCACCTGAGGACGGCTCTCATCGTCCAGCGGCTGAACCAACACCGCCAGGTGCACAACCTACCGCCCCAGGGAGCCTGAAAGCCCCTGATACGCGTAACGAAAAACTTAATTCTCTGGAAGACGTACGCAAAGGCAGTGAAAATTATGCGCTGACCACTAATc                                                                     <  1:1900783/285‑1 (MQ=255)
                                                                                                                                                                                                                  cgttCAGTAAGAAATTAAGGAGACGAGGTCAATGTCGAAACATAACGAAAAGAACCCACATCAGCACCAGTCACCACTACACGATTCCAGCGAAGCGAAACCGGGGATGGACTCACTGGCACCTGAGGACGGCTCTCATCGTCCAGCGGCTGAACCAACACCGCCAGGTGCACAACCTACCGCCCCAGGGAGCCTGAAAGCCCCTGATACGCGTAACGAAAAACTTAATTCTCTGGAAGACGTACGCAAAGGCAGTGAAAATTATGCGCTGACCACTAATCAGGGCGTg                                                             <  1:600576/287‑1 (MQ=255)
                                                                                                                                                                                                                  cTTTCAGTAATAAATTAAGGAGACGAGTTCAATGTCGCAACATAACGAAAAGAACCCACATCAGCACCAGTCACCACTACACGATTCCAGCGAAGCGAAACCGGGGATGGACTCACTGGCACCTGAGGACGGCTCTCATCGTCCAGCGGCTGAACCAACACCGCCAGGTGCACAACCTACCGCCCCAGGGAGCCTGAAAGCCCCTGATACGCGTAACGAAAAACTTAATTCTCTGGAAGACGTACGCAAAGGCAGTGAAAATTATgcg                                                                                  >  1:1416194/1‑268 (MQ=255)
                                                                                                                                                                                                                  cTTTCAGTAATAAATTAAGGAGACGAGTTCAATGTCGCAACATAACGAAAAGAACCCACATCAGCACCAGTCACCACTACACGATTCCAGCGAAGCGAAACCGGGGATGGACTCACTGGCACCTGAGGACGGCTCTCATCGTCCAGCGGCTGAACCAACACCGCCAGGTGCACAACCTACCGCCCCAGGGAGCCTGAAAGCCCCTGATACGCGTAACGAAAAACTTAATTCTCTGGAAGACGTACGCAAAGGCAGCGAAAATTATGCGCTGACCACTAATCAGGGCGt                                                              >  1:1362513/1‑288 (MQ=255)
                                                                                                                                                                                                                  cTTTAAGTAATAAATTAAGGCGCCGAGTTAAATGTCGAAACATAACGAAAAGAACCCACATCAGCACCAGTAACCACTACACGATTCCAGCGAAGCGAAACCGGGGATGGACTCACTGGCACCTGAGGACGGCTCTCATCGTCCAGCGGCTGAACCAACACCGCCAGGTGCACAACCTACCGCCCCAGGGAGCCTGAAAGCCCCTGATACGCGTAACGAAAAACTTAATTCTCTGGAAGACGTACGCAAAGGCAGTGAAAATTATGCGCTGACCACTAATCAGGGCGTg                                                             <  1:1042861/289‑1 (MQ=255)
                                                                                                                                                                                                                            taaATTAAGGAGACGAGTTCAATGTCGCAACATAACGAAAAGAACCCACATCAGCACCAGTCACCACTACACGATTCCAGCGAAGCGAAACCGGGGATGGACTCACTGGCACCTGAGGACGGCTCTCATCGTCCAGCGGCTGAACCAACACCGCCAGGTGCACAACCTACCGCCCCAGGGAGCCTGAAAGCCCCTGATACGCGTAACGAAAAACTTAATTCTCTGGAAGACGTACGCAAAGGCAGTGAAAATTATGCGCTGACCACTAATCAGGGCGTGCGCATCGCcg                                                   >  1:716470/1‑289 (MQ=255)
                                                                                                                                                                                                                              aaTTAAGGAGACGAGTTCAATGTCGCAACATAACGAAAAGAACCCACATCAGCACCAGTCACCACTACACGATTCCAGCGAAGCGAAACCGGGGATGGACTCACTGGCACCTGAGGACGGCTCTCGTCGTCCAGCGGCTGAACCAACACCGCCAGGTGCACAACCTACCGCCCCAGGGAGCCTGAAAGCCCCTGATACGCGTAACGAAAAACTTAATTCTCTGGAAGACGTACGCAAAGGCAGTGAAAATTATGCGCTGACCACTAATCAGGGCGTGCGCATCGCcgac                                                 <  1:520760/289‑1 (MQ=255)
                                                                                                                                                                                                                              aaTTAAGGAGACGAGTTCAATGTCGCAACATAACGAAAAGAACCCACATCAGCACCAGTCACCACTACACGATTCCAGCGAAGCGAAACCGGGGATGGACTCACTGGCACCTGAGGACGGCTCTCATCGTCCAGCGGCTGAACCAACACCGCCAGGTGCACAACCTACCGCCCCAGGGAGCCTGAAAGCCCCCGATACGCGTAACGAAAAACTTAATTCTCGGGAACACGTACGCAAAGGCAGTGAAAATTATGCGCTGAACACTAATCAGAGACGCCGCATCGCcga                                                  >  2:1864553/1‑288 (MQ=255)
                                                                                                                                                                                                                                 tAAGGAGACGAGTTCAATGTCGCAACATAACGAAAAGAACCCACATCAGCACCAGTCACCACTACACGATTCCAGCGAAGCGAAACCGGGGATGGACTCACTGGCACCTGAGGACGGCTCTCATCGTCCAGCGGCTGAACCAACACCGCCAGGTGCACAACCTACCGCCCCAGGGAGCCTGAAAGCCCCTGATACGCGTAACGAAAAACTTAATTCTCTGGAAGACGTACGCAAAGGCAGTGAAAATTATGCGCTGACCACTAATCAGGGCGTGCGCATCGCcgacga                                               >  1:1696621/1‑288 (MQ=255)
                                                                                                                                                                                                                                                      gcAACATAACGAAAAGAACCCACATCAGCACCAGTCACCACTACACGATTCCAGCGAAGCGAAACCGGGGATGGACTCACTGGCACCTGAGGACGGCTCTCATCGTCCAGCGGCTGAACCAACACCGCCAGGTGCACAACCTACCGCCCCAGGGAGCCTGAAAGCCCCTGATACGCGTAACGAAAAACTTAATTCTCTGGAAGACGTACGCAAAGGCAGTGAAAATTATGCGCTGACCACTAATCAGGGCGTGCGCATCGCCGACGATCAAAACTCACTGCGTGCCGGt                         <  1:204844/288‑1 (MQ=255)
                                                                                                                                                                                                                                                       cAACATAACGAAAAGAACCCACATCAGCACCAGTCACCACTACACGATTCCAGCGAAGCGAAACCGGGGATGGACTCACTGGCACCTGAGGACGGCTCTCATCGTCCAGCGGCTGAACCAACACCGCCAGGTGCACAACCTACCGCCCCAGGGAGCCTGAAAGCCCCTGATACGCGTAACGAAAAACTTACTTCTCTGGAAGACGTACGCAAAGGCAGTGAAAATTATGCGCTGACCACTAATCAGGGCGTGCGTATGGCCGACGATCAAAACTCACTCCGTGCCgga                         >  2:1306376/1‑287 (MQ=255)
                                                                                                                                                                                                                                                       cAACATAACGAAAAGAACCCACATCAGCACCAGTCACCACTACACGATTCCAGCGAAGCGAAACCGGGGATGGACTCACTGGCACCTGAGGACGGCTCTCATCGTCCAGCGGCTGAACCAACACCGCCAGGTGCACAACCTACCGCCCCAGGGAGCCTGAAAGCCCCTGATACGCGTAACGAAAAACTTAATTCTCTGGAAGACGTACGCAAAGGCAGTGAAAATTATGCGCTGACCACTAATCAGGGCGTGCGCATCGCCGACGATCAAAACTCACTGCGTGCCGGTa                        >  1:1287464/1‑289 (MQ=255)
                                                                                                                                                                                                                                                       cAACATAACGAAAAGAACCCACATCAGCACCAGTCACCACTACACGATTCCAGCGAAGCGAAACCGGGGATGGACTCACTGGCACCTGAGGACGGCTCTCATCGTCCAGCGGCTGAACCAACACCGCCAGGTGCACAACCTACCGCCCCAGGGAGCCTGAAAGCCCCTGATACGCGTAACGAAAAACTTAATTCTCTGGAAGACGTACGCAAAGGCAGTGAAAATTATGCGCTGACCACTAATCAGGGCGTGCGCATCGCCGACGATCAAAACTCACTGCGTGCCGGTa                        >  1:1109739/1‑289 (MQ=255)
                                                                                                                                                                                                                                                       cAACATAACGAAAAGAACCCACATCAGCACCAGTCACCACTACACGATTCCAGCGAAGCGAAACCGGGGATGGACTCACTGGCACCTGAGGACGGCTCTCATCGTCCAGCGGCTGAACCAACACCGCCAGGTGCACAACCTACCGCCCCAGGGAGCCTGAAAGCCCCTGATACGCGTAACGAAAAACTTAATTCTCTGGAAGACGTACGCAAAGGCAGTGAAAATTATGCGCGGCCAACTAATCAGGGCGGGCGCACCGCCGACGACCAAACCTCACTGCGTGc                             >  1:306459/1‑284 (MQ=255)
                                                                                                                                                                                                                                                           aTAACGAAAAGAACCGACATCAGCACCAGTAACCACTACACGATTCCAGCGAAGCGAAACCGGGGATGGACTCACTGGCCCCGGAGGACGGCTCTCATCGTCCAGCGGCTGAACCAACACCGCCAGGTGCACAACCTACCGCCCCAGGGAGCCTGAAAGCCCCTGATACGCGTAACGAAAAACTTAATTCTCTGGAAGACGTACGCAAAGGCAGTGAAAATTATGCGCTGACCACTAATCAGGGCGTGCGCATCGCCGACGATCAAAACTCACTGCGTGCCGGTAGCCg                    <  2:443075/289‑1 (MQ=255)
                                                                                                                                                                                                                                                              aCGAAAAGAACCCACATCAGCACCAGTCACCACTACACGATTCCAGCGAAGCGAAACCGGGGATGGACTCACTGGCACCTGAGGACGGCTCTCATCGTCCAGCGGCTGAACCAACACCGCCAGGTGCACAACCTACCGCCCCAGGGAGCCTGAAAGCCCCTGATACGCGTAACGAAAAACTTAATTCTCAGGAAGACGTACGCAAAGGCAGTGAAAATTATGCGCTGACCACTAATCAGGGCGTGCGCATCGCCGACGATCAAAACTCACTGCTGTCCGGTAGCCGTgg                 >  2:746443/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                gAAAAGAACCCACATCAGCACCAGTCACCACTACACGATTCCAGCGAAGCGAAACCGGGGATGGACTCACTGGCACCTGAGGACGGCTCTCATCGTCCAGCGGCTGAACCAACACCGCCAGGTGCACAACCTACCGCCCCAGGGAGCCTGAAAGCCCCTGATACGCGTAACGAAAAACTTAATTCTCTGGAAGACGTACGCAAAGGCAGTGAAAATTATGCGCTGACCACCAATCAGGGCGTGCGCATCGGCGAAGATCAAAACTCACTGCGTGCCGGTAGCCGGGGt                >  2:549847/1‑288 (MQ=255)
                                                                                                                                                                                                                                                                   aaGAACCCACATCAGCACCAGTCACCACTACACGATTCCAGCGAAGCGAAACCGGGGATGGACTCACTGGCACCTGAGGACGGCTCTCATCGTCCAGCGGCTGAACCAACACCGCCAGGTGCACAACCTACCGCCCCAGGGAGCCTGAAAGCCCCTGATACGCGTAACGAAAAACTTAATTCTCTGGAAGACGTACGCAAAGGCAGTGAAAATTATGCGCTGACCACTAATCAGGGCGTGCGCATCGCCGACGATCAAAACTCACTGCGTGCCGGTAGCCGTGGTCCaa            <  1:1196700/289‑1 (MQ=255)
                                                                                                                                                                                                                                                                      atccccccacAGCACCAGGCACCACTACACGATTCCGTGGCAGCGAAACCGGGGATGGACTCACTGGGACCTGAGGACGGCTCTCATCGTCCAGCGGCTTAACCAACACCGCCAGGTGCACAACCAACCGCTCCAGGGGGCCTGAATGCCCCTGATACGCGTAACGAAAGACTTAATTCTCTGGAAGACGTACGCAAAGGCAGTGAACATTATGCGCTGACCACTAATCAGGGCGTGCGCCTCGCCGACGATCAAAACTCACTGCGTGCCGGTTGCCGTGGTCCAACgc         <  2:667880/280‑1 (MQ=255)
                                                                                                                                                                                                                                                                            caTCAGCACCAGTCACCACTACACGATTCCAGCGAAGCGAAACCGGGGATGGACTCACTGGCACCTGAGGACGGCTCTCATCGTCCAGCGGCTGAACCAACACCGCCAGGTGCACAACCTACCGCCCCAGGGAGCCTGAAAGCCCCTGATACGCGTAACGAAAAACTTAATTCTCTGGAAGACGTACGCAAAGGCAGTGAAAATTATGCGCTGAcc                                                                            <  2:1559955/216‑1 (MQ=255)
                                                                                                                                                                                                                                                                             aTCAGCACCAGTCACCACTACACGATTCCAGCGAAGCGAAACCGGGGATGGACTCACTGGCACCTGAGGACGGCTCTCATCGTCCAGCGGCTGAACCAACACCGCCAGGTGCACAACCTACCGCCCCAGGGAGCCTGAAAGCCCCTGATACGCGTAACGAAAAACTTAATTCTCTGGAAGACGTACGCAAAGGCAGTGAAAATTATGCGCTGACCACTAATCAGGGCGTGCGCATCGCCGACGATCAAAACTCACTGCGTGCCGGTAGCCGTGGTCCAACGCTGCTGGa  <  1:1525351/289‑1 (MQ=255)
                                                                                                                                                                                                                                                                             aTCAGCACCAGTCACCACTACACGATTCCAGCGAAGCGAAACCGGGGATGGACTCACTGGCACCTGAGGACGGCTCTCATCGTCCAGCGGCTGAACCAACACCGCCAGGTGCACAACCTACCGCCCCAGGGAGCCTGAAAGCCCCTGATACGCGTAACGAAAAACTTAATTCTCTGGAAGACGTACGCAAAGGCAGTGAAAATTATGCGCTGACCACTAATCAGGGCGTGCGCATCGCCGACGATCAAAACTCACTGCGTGCCGGTAGCCGTGGTCCAACGCTGCTGGa  <  1:900430/289‑1 (MQ=255)
                                                                                                                                                                                                                                                                             aTCAGCACCAGTCACCACTACACGATTCCAGCGAAGCGAAACCGGGGATGGACTCACGGGCACCTGAGGACGGCTCTCATCGTCCAGCGGCTGAACCAACACCGCCAGGTGCACAACCTACCGCCCCAGGGAGCCTGAAAGCCCCTGATACGCGTAACGAAAAACTTAATTCTCTGGAAGACGTACGCAAAGGCAGTGAAAATTATGCGCTGACCACTAATCAGGGCGTGCGCATCGCCGACGATCAAAACTCACTGCGTGCCGGTAGCCGTGGTCCAACGCTGCTGGa  <  2:1126022/289‑1 (MQ=255)
                                                                                                                                                                                                                                                                                        |||                                                                                                                                                                                                                                                                                   
ATAATCTGGCGGTTTTGCTGGCGGAGCGGTTTCTTCATTACTGGCTTCACTAAACGCATATTAAAAATCAGAAAAACTGTAGTTTAGCCGATTTAGCCCCTGTACGTCCCGCTTTGCGTGTATTTCATAACACCGTTTCCAGAATAGTCTCCGAAGCGGGATCTGGCTGGTGGTCTATAGTTAGAGAGTTTTTTGACCAAAACAGCGGCCCTTTCAGTAATAAATTAAGGAGACGAGTTCAATGAGCCAACATAACGAAAAGAACCCACATCAGCACCAGAGTCCACTACACGATTCCAGCGAAGCGAAACCGGGGATGGACAGTCTGGCACCTGAGGACGGCTCTCATCGTCCAGCGGCTGAACCAACACCGCCAGGTGCACAACCTACCGCCCCAGGGAGCCTGAAAGCCCCTGATACGCGTAACGAAAAACTTAATTCTCTGGAAGACGTACGCAAAGGCAGTGAAAATTATGCGCTGACCACTAATCAGGGCGTGCGCATCGCCGACGATCAAAACAGTCTGCGTGCCGGTAGCCGTGGTCCAACGCTGCTGGA  >  CP042583/1495577‑1496134

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A