Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A4 F210 I1 R1 4930 262.8 3829204 96.6% 3699011 272.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA CP042583 1,611,413 3 bp→CGA intergenic (–/–) – / – –/–

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0425831,611,4130GC99.6% 579.0 / ‑5.3 243intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base G (0/0);  major base C (94/148);  minor base . (1/0);  total (95/148)
Fisher's exact test for biased strand distribution p-value = 3.91e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*CP0425831,611,4140CG99.6% 573.4 / NA 243intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base C (1/0);  new base G (94/148);  total (95/148)
Fisher's exact test for biased strand distribution p-value = 3.91e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01
*CP0425831,611,4150TA99.6% 578.0 / NA 243intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base T (0/0);  major base A (94/148);  minor base G (1/0);  total (95/148)
Fisher's exact test for biased strand distribution p-value = 3.91e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 243 total aligned reads displayed.

AGAAAGCATGGTACAAATTGTCAGGAGCGCAAGTTGCTTCAGGCCGCGTGACTGGCATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGTGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGGCTAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCAGGTGTCAAGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAAGCTCATTTTCTCTTCGCCCTCACGAATGACTACGTATTTAACTTCAACCGCCATTTGCAGCCTCTCATAATAACTGTGATTTTATACAGTATATTTCTTTTCGGTTGAGAAATCAACATCAGCAATAAAG‑ACACACGCAAACGTTTTCGTTTATACTGCGCGCGGAATTAATCAGGGGATATTCGTTATGACGTTATTAGGCACTGCGCTGCGTCCGGCAGCAACTCGCGTGATGTTATTAGGCTCCGGTGAACTGGGTAAAGAAGTGGCAATCGAGT  >  CP042583/1611138‑1611690
                                                                                                                                                                                                                                                                                   |||                                                                                                                                                                                                                                                                                    
agaAAGCATGGTACAAATTGTCAGGAGCGCAAGTTGCTTCAGGCCGCGTGTGAGGCATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGTGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCAGGTGTCAAGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTctct                                                                                                                                                                                                                                                                            <  1:661799/288‑1 (MQ=255)
    aGCATGGTACAAATTGTCAGGAGCGCAAGTTGCTTCAGGCCGCGTGTGAGGCATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGTGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCAGGTGTCAAGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGc                                                                                                                                                                                                                                                                        >  1:1874995/1‑288 (MQ=255)
    aGCATGGTACAAATTGTCAGGAGCGCAAGTTGCTTCAGGCCGCGTGTGAGGCATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGTGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCAGGTGTCAAGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGc                                                                                                                                                                                                                                                                        >  2:1568383/1‑288 (MQ=255)
         ggTACAAATTGTCAGGAGCGCAAGTTGCTTCAGGCCGCGTGTGAGGCATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGTGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCAGGTGTCAAGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCAc                                                                                                                                                                                                                                                                  >  1:442288/1‑289 (MQ=255)
           tACAAATTGTCAGGAGCGCAAGTTGCTTGAGGCCGCGTGTGAGGCATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGTGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCAGGTGTCAAGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACg                                                                                                                                                                                                                                                                 <  2:1345097/288‑1 (MQ=255)
               tgtggttaGGTGCGGAAGTTGCGTGAGGCCGCTGTTCAGGCACCTTCCTCTTCGGATTCAGAACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGTGCTCATCACATCTTTTTGTACTGACATCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCAGGTGTCAAGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGa                                                                                                                                                                                                                                                            <  2:922696/282‑1 (MQ=255)
                aTTGTCAGGAGCGCAAGTTGCTTCAGGCCGCGTGTGAGGCATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGTGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCAGGTGTCAAGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATg                                                                                                                                                                                                                                                             >  1:1307883/1‑287 (MQ=255)
                 ttGTCAGGAGCGCAAGTTGCTTCAGGCCGCGTGTGAGGCATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGTGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCAGGTGTCAAGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACt                                                                                                                                                                                                                                                          <  1:509941/289‑1 (MQ=255)
                   gacAGGAGCGCAAGTTGCTTCAGGCCGCGTGTGAGGCATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGTGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCAGGTGTCAAGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTAc                                                                                                                                                                                                                                                        <  2:1133917/287‑1 (MQ=255)
                   gTCAGGAGCGCAAGTTGCTTCAGGCCGCGTGTGAGGCATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGTGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCAGGTGTCAAGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACt                                                                                                                                                                                                                                                          <  1:1642569/287‑1 (MQ=255)
                     cAGGAGCGCAAGTTGCTTCAGGCCGCGTGTGAGGCATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGTGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCAGGTGTCAAGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTACGt                                                                                                                                                                                                                                                      >  2:542357/1‑289 (MQ=255)
                            gcAAGTTGCTTCAGGCCGCGTGTGAGGCATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGTGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCAGGTGTCAAGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTACGTATTTa                                                                                                                                                                                                                                                 >  2:252863/1‑287 (MQ=255)
                                  tGCTTCAGGCCGCGTGTGAGGCATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGTGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCAGGTGTCAAGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTACGTATTTAACTTCaa                                                                                                                                                                                                                                          <  1:1196657/288‑1 (MQ=255)
                                              cgtgtgaggCATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGTGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCAGGTGTCAAGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGACTGACTACGTATTGAACTTCAACCGCCCTTTGCa                                                                                                                                                                                                                              >  2:39406/8‑288 (MQ=255)
                                              cgtgtgaggCATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGTGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCAGGTGTCAAGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCG‑CCTCACGAATGGCTACGTATTTAACTTCAACCGCCCTTTGCAg                                                                                                                                                                                                                             >  1:51313/8‑288 (MQ=255)
                                               gtgtgaggCATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGTGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCAGGTGTCAAGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTACGTATTTAACTTCAACCGCCATTTGCAGc                                                                                                                                                                                                                            <  1:691861/283‑1 (MQ=255)
                                               gtggtggcgaTCTTCCTCTTCGGTTTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGTGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCAGGTGTCAAGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTACGTATTTAACTTCAACCGCCATTTGCAGc                                                                                                                                                                                                                            <  2:1307883/280‑1 (MQ=255)
                                                ggtcaggCATCTTCCGCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGTGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCAGGTGTCAAGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTACGTATTTAACTTCAACCGCCATTTGCAGc                                                                                                                                                                                                                            <  2:730057/283‑1 (MQ=255)
                                                 gtgaggCATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGTGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCAGGTGTCAAGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTACGTATTTAACTTCAACCGCCATTTGCAGCct                                                                                                                                                                                                                          <  1:622619/285‑1 (MQ=255)
                                                         tCTTCCTCTTCGGATTCAGCACCGACGACCTGTTGGGACGGTAATTTGCCGGTTTTCAGAATGGTGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCAGGTGTCAAGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTACGTATTTAACTTCAACCGCCATTTGCAGCCTCTCataat                                                                                                                                                                                                                  <  2:1548384/289‑1 (MQ=255)
                                                            tCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGTGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCAGGTGTCAAGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTACGTATTTAACTTCAACCGCCATTTGCa                                                                                                                                                                                                                              >  2:1451571/1‑274 (MQ=255)
                                                            tCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGTGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCAGGTGTCAAGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTACGTATTTAACTTCAACCGCCATTTGCa                                                                                                                                                                                                                              <  1:1451571/274‑1 (MQ=255)
                                                              ctctTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGTGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCGGGTGTCAAGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTACGTATTTAACTTCAACCGCCATTTGCAGCCTCTCATAATAACtg                                                                                                                                                                                                             <  1:1029251/289‑1 (MQ=255)
                                                              ctctTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGTGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCAGGTGTCAAGCAGATCCGCTGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTACGTATTTAACTTCAACCGCCATTTGCAGCCTCTCATAATAACtg                                                                                                                                                                                                             <  1:1684673/289‑1 (MQ=255)
                                                              ctctTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGTGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCAGGTGTCAAGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTACGTATTTAACTTCAACCGCCATTTGCAGCCTCTCATAATAACtg                                                                                                                                                                                                             <  2:1320159/289‑1 (MQ=255)
                                                              ctctTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGTGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCAGGTGTCAAGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTACGTATTTAACTTCAACCGCCATTTGCAGCCTCTCATAATAACtg                                                                                                                                                                                                             <  1:845506/289‑1 (MQ=255)
                                                              ctctTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGTGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCAGGTGTCAAGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTACGTATTTAACTTCAACCGCCATTTGCAGCCTCTCATAATAACtg                                                                                                                                                                                                             <  1:1074888/289‑1 (MQ=255)
                                                              ctctTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGTGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCAGGTGTCAAGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTACGTATTTAACTTCAACCGCCATTTGCAGCCTCTCATAATAACtg                                                                                                                                                                                                             <  1:1081800/289‑1 (MQ=255)
                                                              ctctTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGTGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCAGGTGTCAAGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTACGTATTTAACTTCAACCGCCATTTGCAGCCTCTCATAATAACtg                                                                                                                                                                                                             <  1:1568383/289‑1 (MQ=255)
                                                                ctTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGTGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCAGGTGTCAAGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTACGTATTTAACTTCAACCGCCATTTGCAGCCTCTCATAATAACtgtg                                                                                                                                                                                                           >  1:613462/1‑289 (MQ=255)
                                                                   cGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGTGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCAGGTGTCAAGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTACGTATTTAACTTCAACCGCCATTTGCAGCCTCTCATAATAACTGTGAtt                                                                                                                                                                                                        <  1:1233131/289‑1 (MQ=255)
                                                                     gATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGTGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCAGGTGTCAAGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTACGTATTTAACTTCAACCGCCATTTGCAGCCTCTCATAATAACTGTGAtttt                                                                                                                                                                                                      >  1:1532763/1‑289 (MQ=255)
                                                                        tCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGTGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCAGGTGTCAAGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTACGTATTTAACTTCAACCGCCATTTGCAGCCTCTCATAATAACTGTGATTTtata                                                                                                                                                                                                   <  2:442288/289‑1 (MQ=255)
                                                                        tCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGTGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCAGGTGTCAAGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTACGTATTTAACTTCAACCGCCATTTGCAGCCTCTCATAATAACTGTGATTTtata                                                                                                                                                                                                   <  1:1329513/289‑1 (MQ=255)
                                                                             aCCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGTGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCAGGTGTCAAGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTACGTATTTAACTTCAACCGCCATTTGCAGCCTCTCATAATAACTGTGATTTTATACAGt                                                                                                                                                                                               <  1:1111260/288‑1 (MQ=255)
                                                                                gacgacCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGTGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCAGGTGTCAAGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACt                                                                                                                                                                                                                                                          >  1:1282118/1‑226 (MQ=255)
                                                                                       tgtgGGGACGGTAATTTGCCGGTTTTCAGAATGGTGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCAGGTGTCAAGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTACGTATTTAACTTCAACCGCCATTTGCAGCCTCTCATAATAACTGTGATTTTATACAGTATATTTCtttt                                                                                                                                                                                    <  1:1857115/289‑1 (MQ=255)
                                                                                           gggACGGTAATTTGCCGGTTTTCAGAATGGTGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCAGGTGTCAAGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTACGTATTTAACTTCAACCGCCATTTGCAGCctct                                                                                                                                                                                                                        >  2:1589472/1‑249 (MQ=255)
                                                                                           gggACGGTAATTTGCCGGTTTTCAGAATGGTGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCAGGTGTCAAGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTACGTATTTAACTTCAACCGCCATTTGCAGCctct                                                                                                                                                                                                                        <  1:1589472/249‑1 (MQ=255)
                                                                                               cGGTAATTTGCCGGTTTTCAGAATGGTGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCAGGTGTCAAGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTACGTATTTAACTTCAACCGCCATTTGCAGCCTCTCATAATAACTGGGATTTTATACATCATATTTCTTTTCGGTTgag                                                                                                                                                                            >  2:972161/1‑289 (MQ=255)
                                                                                               cGGTAATTTGCCGGTTTTCAGAATGGTGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCAGGTGTCAAGCAGATCCGCCGTATCAAGCATTTTCTCATAAGCATCGGCCTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTACGTATTTAACTTCAACCGCAATTTGCAGCCTCTCATAATAACTGTGATTTTATACAGTATATTTCTTTTCGGTTgag                                                                                                                                                                            >  2:1175760/1‑289 (MQ=255)
                                                                                                ggTAATTTGCCGGTTTTCAGAATGGTGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCAGGTGTCAAGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTACGTATTTAACTTCAACCGCCATTTGCAGCCTCTCATAATAACTGTGATTTTATACAGTATATTTCTTTTCGGTTgaga                                                                                                                                                                           >  1:1318544/1‑289 (MQ=255)
                                                                                                   aaTTTGCCGGTTTTCAGAATGGTGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCAGGTGTCAAGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTACGTATTTAACTTCAACCGCCATTTGCAGCCTCTCATAATAACTGTGATTTTATACAGTATATTTCTTTTCGGTTGAGaaa                                                                                                                                                                         >  1:1411622/1‑288 (MQ=255)
                                                                                                        gCCGGTTTTCAGAATGGTGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCAGGTGTCAAGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTACGTATTTAACTTCAACCGCCATTTGCAGCCTCTCATAATAACTGTGATTTTATACAGTATATTTCTTTTCGGTTGAGAAATCAACa                                                                                                                                                                   >  1:403656/1‑289 (MQ=255)
                                                                                                          cGGTTTTCAGAATGGTGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCAGGTGTCAAGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTACGTATTTAACTTCAACCGCCATTTGCAGCCTCTCATAATAACTGTGATTTTATACAGTATATTTCTTTTCGGTTGAGAAATCAACAt                                                                                                                                                                  <  1:1222432/288‑1 (MQ=255)
                                                                                                          cGGTTTTCAGAATGGTGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCAGGTGTCAAGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTACGTATTTAACTTCAACCGCCATTTGCAGCCTCTCATAATAACTGTGATTTTATACAGTATATTTCTTTTCGGTTGAGAAATCAACAt                                                                                                                                                                  <  2:1075706/288‑1 (MQ=255)
                                                                                                            gTTTTCAGAATGGTGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGCTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCAGGTGTCAAGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTACGTATTTAACTTCAACCGCCATTTGCAGCCTCTCATAATAACTGTGATTTTATACAGTATATTTCTTTTCGGTTGAGAAATCAACATCa                                                                                                                                                                >  2:373682/1‑288 (MQ=255)
                                                                                                                         tGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCAGGTGTCAAGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTACGTATTTAACTTCAACCGCCATTTGCAGCct                                                                                                                                                                                                                          <  2:1514449/217‑1 (MQ=255)
                                                                                                                           cTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCAGGTGTCAAGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTACGTATTTAACTTCAACCGCCATTTGCAGCCTCTCATAATAACTGTGATTTTATACAGTATATTTCTTTTCGGTTGAGAAATCAACATCAGCAATAAAG‑acacac                                                                                                                                                >  2:957050/1‑288 (MQ=255)
                                                                                                                           cTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCAGGTGTCAAGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTACGTATTTAACTTCAACCGCCATTTGCAGCCTCTCATAATAACTGTGATTTTATACAGTATATTTCTTTTCGGTTGAGAAATCAACATCAGCAATAAAG‑acacac                                                                                                                                                >  1:1003810/1‑288 (MQ=255)
                                                                                                                           cTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCAGGTGTCAAGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTACGTATTTAACTTCAACCGCCATTTGCAGCCTCTCATAATAACTGTGATTTTATACAGTATATTTCTTTTCGGTTGAGAAATCAACATCAGCAATAAAG‑acacac                                                                                                                                                >  2:896169/1‑288 (MQ=255)
                                                                                                                            tCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCAGGTGTCAAGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTACGTATTTAACTTCAACCGCCATTTGCAGCCTCTCATAATAACTGTGATTTTATACAGTATATTTCTTTTCGGTTGAGAAATCAACATCAGCAATAAAG‑ACACACGc                                                                                                                                              <  2:475835/289‑1 (MQ=255)
                                                                                                                              aGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCAGGTGTCAAGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTACGTATTTAACTTCAACCGCCATTTGCAGCCTCTCATAATAACTGTGATTTTATACAGTATATTTCTTTTCGGTTGAGAAATCAACATCAGCAATAAAG‑ACACACGCaa                                                                                                                                            >  1:1907368/1‑289 (MQ=255)
                                                                                                                              aGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCAGGTGTCAAGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTACGTATTTAACTTCAACCGCCATTTGCAGCCTCTCATAATAACTGTGATTTTATACAGTATATTTCTTTTCGGTTGAGAAATCAACATCAGCAATAAAG‑ACACACGCaa                                                                                                                                            >  2:1590566/1‑289 (MQ=255)
                                                                                                                                cacaTCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCAGGTGTCAAGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTACGTATTTAACTTCAACCGCCATTTGCAGCCTCTCATAATAACTGTGATTTTATACAGTATATTTCTTTTCGGTTGAGAAATCAACATCAGCAATAAAG‑ACACACGCAAAc                                                                                                                                          >  1:1764249/1‑289 (MQ=255)
                                                                                                                                   aTCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCAGGTGTCAAGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTACGTATTTAACTTCAACCGCCATTTGCAGCCTCTCATAATAACTGTGATTTTATACAGTATATTTCTTTTCGGTTGAGAAATCAACATCAGCAATAAAG‑ACACACGCAAACGtt                                                                                                                                       <  2:1907368/289‑1 (MQ=255)
                                                                                                                                   aTCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCAGGTGTCAAGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTACGTATTTAACTTCAACCGCCATTTGCAGCCTCTCATAATAACTGTGATTTTATACAGTATATTTCTTTTCGGTTGAGAAATCAACATCAGCAATAAAG‑ACACACGCAAACGtt                                                                                                                                       >  2:626570/1‑289 (MQ=255)
                                                                                                                                   aTCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCAGGTGTCAAGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTACGTATTTAACTTCAACCGCCATTTGCAGCCTCTCATAATAACTGTGATTTTATACAGTATATTTCTTTTCGGTTGAGAAATCAACATCAGCAATAAAG‑ACACACGCAAACGtt                                                                                                                                       <  2:1466887/289‑1 (MQ=255)
                                                                                                                                   aTCTTTTGGCTCTGCCAGCCATAGCGGAAGGGCTTCACGTTGCTCGTGTTCCATTTGCACTGGAGAATTTGTCAGGCAGGTGTCAAGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTACGTATTTAACTTCAACCGCCATTTGCAGCCTCTCATAATAACTGTGATTTTATACAGTATATTTCGTTTCGGTTGAGAAATCAACATCAGCAAGAAAG‑ACACACGCAAACGtt                                                                                                                                       <  2:464562/289‑1 (MQ=255)
                                                                                                                                          tGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCAGGTGTCAAGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTACGTATTTAACTTCAACCGCCATTTGCAGCCTCTCATAATAACTGTGATTTtata                                                                                                                                                                                                   >  2:1824486/1‑223 (MQ=255)
                                                                                                                                             tCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCAGGTGTCAAGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTACGTATTTAACTTCAACCGCCATTTGCAGCCTCTCATAATAACTGTGATTTTATACAGTATATTTCTTTTCGGTTGAGAAATCAACATCAGCAATAAAG‑ACACACGCAAACGTTTTCGTTtat                                                                                                                              >  1:731737/1‑288 (MQ=255)
                                                                                                                                               tGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCAGGTGTCAGGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTACGTATTTAACTTCAACCGCCATTTGCAGCCTCTCATAATAACTTTGATTTTATACAGTATATTTCTTTTGGGTTGAGAAATCAACATCAGCAATAAAG‑ACACACGCAAACGTTTTCGTTTATACt                                                                                                                           >  1:1481102/1‑289 (MQ=255)
                                                                                                                                                gccagccaTAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCAGGTGTCAAGCAGATCCGCCGTATCAAGCATTTTGTCATAAGAATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTACGTATTTAACTTCAACCGCCATTTGCAGCCTCTCATACTAACTGTGATTTTATACAGTATATTTCTTTTCGGTTGACAATTCAACACAAGCAATAAAGTACAC‑CGCAAACGTTTTCGTTcataat                                                                                                                           >  2:67214/1‑286 (MQ=255)
                                                                                                                                                    gccaTAGCGCAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCAGGTGGCAAGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTACGTATTTAACTTCAACCGCCATTTGCAGCCTCTCATAATAACTGTGATTTTATACAGTATATTTCTTTTCGGTTGAGAAATCAACATCAGCAATAAAG‑ACACACGCAAACGTTTTCGTTTATACTgcgcg                                                                                                                      <  2:778682/289‑1 (MQ=255)
                                                                                                                                                      catagcgaaaGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCAGGTGTCAAGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTACGTATTTAACTTCAACCGCCATTTGCAGCCTCTCATAATAACTGTGATTTTATACAGTATATTTCTTTTCGGTTGAGAAATCAACATCAGCAATAAAG‑ACACACGCAAACGTTTTCGTTTATACTgcgcg                                                                                                                      <  1:1841026/279‑1 (MQ=255)
                                                                                                                                                      catagcgaaaGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCAGGTGTCAAGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTACGTATTTAACTTCAACCGCCATTTGCAGCCTCTCATAATAACTGTGATTTTATACAGTATATTTCTTTTCGGTTGAGAAATCAACATCAGCAATAAAG‑ACACACGCAAACGTTTTCGTTTATACTGcgcgcg                                                                                                                    <  1:81604/281‑1 (MQ=255)
                                                                                                                                                         agcgaaaGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCAGGTGTCAAGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTACGTATTTAACTTCAACCGCCATTTGCAGCCTCTCATAATAACtg                                                                                                                                                                                                             >  2:510731/6‑198 (MQ=255)
                                                                                                                                                               aGGGCTTCACGTTGCTCGTCTTCCAGTTGCACTGGAGAATTTGTCAGCCAGGTGTCAAGAAGATCCGCCGTATCAAGCCTTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTACGTATTTAACTTCAACCGCCATTTGCAGCCTCTCATAATAACTGTGATTTTATACAGTATATTTCTTTTCGGTTGAGAAATCAACATCAGCAATAAAG‑ACACACGCAAACGTTTTCGTTTATACTGCGCGCGGAATTAATc                                                                                                           <  2:1740864/289‑1 (MQ=255)
                                                                                                                                                                   cTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCAGGTGTCAAGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTACGTATTTAACTTCAACCGCCATTTGCAGCCTCTCATAATAACTGTGATTTTATACAGTATATTTCTTTTCGGTTGAGAAATCAACATCAGCAATAAAG‑ACACACGCAAACGTTTTCGTTTATACTGCGCGCGGAATTAATCAggg                                                                                                       >  1:545523/1‑289 (MQ=255)
                                                                                                                                                                   cTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCAGGTGTCAAGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTACGTATTTAACTTCAACCGCCATTTGCAGCCTCTCATAATAACTGTGATTTTATACAGTATATTTCTTTTCGGTTGAGAAATCAACATCAGCAATAAAG‑ACACACGCAAACGTTTTCGTTTATACTGCGCGCGGAATTAATCAggg                                                                                                       >  1:389541/1‑289 (MQ=255)
                                                                                                                                                                   cTTCACGTTGCTCGTCCTCCATTTCCACTGGAGAATCTGTCAGCCAGGTGTCAAGCAGATCCGCCGTATCAAGCATGTTGTCATAAACATCGGCTTCCTTGTTGCTGGTATACGACATTTTCTCTTCGCCCTCACGAATGACAACGTATTTAACTTCAACCGCACTTTGCACCCTCACATAATAACTGTGATATTATACAGTCTATTTCTTTTCCGTTGAGAAATCAACATCACCCATAAAG‑GCACCAGCTAACCATTTCGTTTATACTGCCCTCGCAatcaatcatga                                                                                                       >  2:1802975/1‑286 (MQ=255)
                                                                                                                                                                    ttCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCAGGTGTCAAGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTACGTATTTAACTTCAACCGCCATTTGCAGCCTCTCATAATAACTGTGATTTTATACAGTATATTTCTTTTCGGTTGAGAAATCAACAt                                                                                                                                                                  <  1:47/230‑1 (MQ=255)
                                                                                                                                                                       aCGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCAGGTGTCAAGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTACGTATTTAACTTCAACCGCCATTTGCAGCCTCTCATAATAACTGTGATTTTATACAGTATATTTCTTTTCGGTTGAGAAATCAACATCAGCAATAAAG‑ACACACGCAAACGTTTTCGTTTCAACTTCGCGCCGAATTAACCAGGGGatt                                                                                                   >  2:34758/1‑288 (MQ=255)
                                                                                                                                                                           tacTCGTCTTCCTTTTGCACTGGAGATTTTGTCAGCCAGGTGTCAAGAAGATCCGCCTTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTACGTATTTAACTTCAACCGCCATTTGCAGCCTCTCATAATAACTGTGATTTTATACAGTATATTTCTTTTCGGTTGAGAAATCAACATCAGCAATAAAG‑ACACACGCAAACGTTTTCGTTTATACTGCGCGCGGAATTAATCAGGGGATATTCg                                                                                               <  2:1255573/287‑1 (MQ=255)
                                                                                                                                                                           tGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCAGGTGTCAAGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTACGTATTTAACTTCAACCGCCATTTGCCGCCTCTCATAATAACTGTGATTTTATACAGCATATTTTTTTTCGTTTGAGAAATCAACATCAGCAATAACT‑ACACACGCAAAAGTTTTCGTTTATACTGCGCGCGGAATTCATCTGGGGagatagt                                                                                               >  2:588860/1‑286 (MQ=255)
                                                                                                                                                                            gCTCGTCTTCCATTTGCACTGGAGCATTTGTCAGCCAGGTGTCAAGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTACGTATTTAACTTCAACCGCCATTTGCAGCCTCTCATAATAACTGAGATTTTATACAGTATATTTCTTTTCGGTTGAGAAATCAACATCAGCAATAAAG‑ACACACGCAAACGTTTTCGCTTATACTGCGCGCGGAATTAATCAGGGGATATTCGt                                                                                              >  1:1815439/1‑289 (MQ=255)
                                                                                                                                                                            gCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCAGGTGTCAAGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTACGTATTTAACTTCAACCGCCATTTGCAGCCTCTCATAATAACtg                                                                                                                                                                                                             <  1:784500/179‑1 (MQ=255)
                                                                                                                                                                            gCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCAGGTGTCAAGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTACGTATTTAACTTCAACCGCCATTTGCAGCCTCTCATAATAACtg                                                                                                                                                                                                             >  2:784500/1‑179 (MQ=255)
                                                                                                                                                                                 tCTTCCATTTTGACTGGAGAAGTTGTCAGCCAGGTGTCAAGCAGATCCGCCGTATCAAGCATTTTGTCATGAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTACGTATTTAACTTCAACCGCCATTTGCAGCCTCTCATAATAACTGTGATTTTATACAGTATATTTCTTTTCGGTTGAGAAATCAACATCAGCAATAAAG‑ACACACGCAAACGTTTTCGTTTATACTGCGCGCGGAATTAATCAGGGGATATTCGTTATGa                                                                                         <  2:109870/289‑1 (MQ=255)
                                                                                                                                                                                  cTTCCATTTGCACTGGAGAATTTGTCAGCCAGGTGTCAAGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTACGTATTTAACTTCAACCGCCATTTGCAGCCTCTCATAATAACTGTGATTTTATACAGTATATTTCTTTTCGGTTGAGAAATCAACATCAGCAATAAAG‑ACACACGCAAACGTTTTCGTTTATACTGCGCGCGGAATTAATCAGGGGATATTCGTTATGa                                                                                         <  1:249260/288‑1 (MQ=255)
                                                                                                                                                                                  cTTCCATTTGCACTGGAGAATTTGTCAGCCAGGTGTCAAGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTACGTATTTAACTTCAACCGCCATTTGCAGCCTCTCATAATAACTGTGATTTTATACAGTATATTTCTTTTCGGTTGAGAAATCAACATCAGCAATAAAG‑ACACACGCAAACGTTTTCGTTTATACTGCGCGCGGAATTAATCAGGGGATATTCGTTATGa                                                                                         <  1:556564/288‑1 (MQ=255)
                                                                                                                                                                                   ttCCATTTGCACTGGAGAATTTGTCAGCCAGGTGTCAAGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTACGTATTTAACTTCAACCGCCATTTGCAGCCTCTCATAATAACTGTGATTTTATACAGTATATTTCTTTTCGGTTGAGAAATCAACATCAGCAATAAAG‑ACACACGCAAACGTTTTCGTTTATACTGCGCGCGGAATTAATCAGGGGATATTCGTTATGACg                                                                                       <  2:1764249/289‑1 (MQ=255)
                                                                                                                                                                                       aTTTGCACTGGAGAATTTGTCAGCCAGGTGTCAAGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTACGTATTTAACTTCAACCGCCATTTGCAGCCTCTCATAATAACTGTGATTTTATACAGTATATTTCTTTTCGGTTGAGAAATCAACATCAGCAATAAAG‑ACACACGCAAACGTTTTCGTTTATACTGCGCGCGGAATTAATCAGGGGATATTCGTTATGACGttat                                                                                   >  1:999157/1‑289 (MQ=255)
                                                                                                                                                                                                ggAGAATTTGTCAGCCAGGTGTCAAGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTACGTATTTAACTTCAACCGCCATTTGCAGCCTCTCATAATAACTGTGATTTTATACAGTATATTTCTTTTCGGTTGAGAAATCAACATCAGCAATAAAG‑aca                                                                                                                                                   <  2:1719618/216‑1 (MQ=255)
                                                                                                                                                                                                         gTCAGCCAGGTGTCAAGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTACGTATTTAACTTCAACCGCCATTTGCAGCCTCTCATAATAACTGTGATTTTATACAGTATATTTCTTTTCGGTTGAGAAATCAACATCAGCAATAAAG‑ACACACGCAAACGtt                                                                                                                                       >  1:380032/1‑219 (MQ=255)
                                                                                                                                                                                                         gTCAGCCAGGTGTCAAGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTACGTATTTAACTTCAACCGCCATTTGCAGCCTCTCATAATAACTGTGATTTTATACAGTATATTTCTTTTCGGTTGAGAAATCAACATCAGCAATAAAG‑ACACACGCAAACGTTTTCGTTTATACTGCGCGCGGAATTAATCAGGGGATATTCGTTATGACGTTATTAGGCACTGCGCTGCGt                                                                  >  2:1221263/1‑288 (MQ=255)
                                                                                                                                                                                                                       aaGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTACGTATTTAACTTCAACCGCCATTTGCAGCCTCTCATAATAACTGTGATTTTATACAGTATATTTCTTTTCGGTTGAGAAATCAACAt                                                                                                                                                                  <  1:142930/179‑1 (MQ=255)
                                                                                                                                                                                                                       aaGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTACGTATTTAACTTCAACCGCCATTTGCAGCCTCTCATAATAACTGTGATTTTATACAGTATATTTCTTTTCGGTTGAGAAATCAACAt                                                                                                                                                                  >  2:142930/1‑179 (MQ=255)
                                                                                                                                                                                                                        aGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTACGTATTTAACTTCAACCGCCATTTGCAGCCTCTCATAATAACTGTGATTTTATACAGTATATTTCTTTTCGGTTGAGAAATCAACATCAGCAATAAAG‑ACACACGCAAACGTTTTCGTTTATACTGCGCGCGGAATTAATCAGGGGATATTCGTTATGACGTTATTAGGCACTGCGCTGCGTCCGGCAGCAACTcgcg                                                  <  1:302351/289‑1 (MQ=255)
                                                                                                                                                                                                                           aGATCCGCCGTATCAAGCATTTTGTCATAAGCCTCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCCCGAATGACTACGTAATTAACTTCAACCGCCATTTGCAGCCTCTCATAATAACTGTGATTTTATACAGTATATTTCTTTTCGGTTGAGAAATCAACATCAGCAATAAAG‑ACACACGCCAACGTTTTCGTTTATACTGCGCGCGGAATTAATCAGGGGATATTCGTTATGACGTTATTAGGCACTGCGCTGCGTCCGGCAGCAACTCGCGt                                                 <  1:52353/287‑1 (MQ=255)
                                                                                                                                                                                                                            gATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTACGTATTTAACTTCAACCGCCATTTGCAGCCTCTCATAATAACtg                                                                                                                                                                                                             <  2:1159766/131‑1 (MQ=255)
                                                                                                                                                                                                                            gATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTACGTATTTAACTTCAACCGCCATTTGCAGCCTCTCATAATAACTGTGATTTTATACAGTATATTTCTTTTCGGTTGAGAAATCAACATCAGCAATAAAG‑ACACACGCAAACGTTTTCGTTTATACTGCGCGCGGAATTAATCAGGGGATATTCGTTATGACGTTATTAGGCActgcgct                                                                      >  2:1046992/1‑265 (MQ=255)
                                                                                                                                                                                                                            gATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTACGTATTTAACTTCAACCGCCATTTGCAGCCTCTCATAATAACTGTGATTTTATACAGTATATTTCTTTTCGGTTGAGAAATCAACATCAGCAATAAAG‑ACACACGCAAACGTTTTCGTTTATACTGCGCGCGGAATTAATCAGGGGATATTCGTTATGACGTTATTAGGCActgcgct                                                                      <  1:1046992/265‑1 (MQ=255)
                                                                                                                                                                                                                             aTCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTACGTATTTAACTTCAACCGCCATTTGCAGCCTCTCATAATAACTGTGATTTTATACAGTATATTTCTTTTCGGTTGAGAAATCAACATCAGCAATAAAG‑ACACACGCAAACGTTTTCGTTTATACTGCGCGCGGAATTAATCAGGGGATATTCGTTATGACGTTATTAGGCACTGCGCTGCGTCCGGCAGCAACTCGCGTGATg                                             >  1:1357806/1‑289 (MQ=255)
                                                                                                                                                                                                                                       tCAAGCATTTTGTCATAAGCATCGGCTTCCTTCTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTACGTATTTAACTTCAACCGCCATTTGCAGCCTCTCATAATAACTGTGATTTTATACAGTATATTTCTTTTCGGTTGAGAAATCAACATCAGCAATAAAG‑ACACACGCAAACGTTTTCGTTTATACTGCGCGCGGAATTAATCAGGGGATATTCGTTATGACGTTATTAGGCACTGCGCTGCGTCCGGCAGCAACTCGCGTGATGTTATTAGGc                                    >  1:93218/1‑288 (MQ=255)
                                                                                                                                                                                                                                               tttGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTACGTATTTAACTTCAACCGCCATTTGCAGCCTCTCATAATAACTGTGATTTTATACAGTATATTTCTTTTCGGTTGAGAAATCAACATCAGCAATAAAG‑ACACACGCAAACGTTTTCGTTTATACTGCGCGCGGAATTAATCAGGGGATATTCGTTATGACGTTATTAGGCACTGCGCTGCGTCCGGCAGCAACTcgcg                                                  <  1:1123837/266‑1 (MQ=255)
                                                                                                                                                                                                                                                 ggTCATAAGCATCGGCCTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGCCTACGTATTTAACTTCAACCGCCATTTGCAGCCTCTCATAATAACTGTGAGTTTATACAGTATTTTTCTTTTCGGTTGAGAAATCAACATCAGCAATAAAG‑ACACACGCAAACGTTTTCGTTTATACTTCGCGCGGAATTAATCAGGGGATATTCGTTATGACGTTATTAGGCACTGCGATGGGTCCGGCAGCAACGCGCGTGATGTTATTAGGTTCCGGTGa                            >  2:1388739/2‑286 (MQ=255)
                                                                                                                                                                                                                                                            tCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTACGTATTTAACTTCAACCGCCATTTGCAGCCTCTCATAATAACTGTGATTTTATACAGTATATTTCTTTTCGGTTGAGAAATCAACATCAGCAATAAAG‑ACACACGCAAACGTTTTCGTTTATACTGCGCGCGGAATTAATCAGGGGATATTCGTTATGACGTTATTAGGCACTGCGCTGCGTCCGGCAGCAACTCGCGTGATGTTATTAGGCTCCGGTGAACTGGGTAaagaag              <  1:454616/289‑1 (MQ=255)
                                                                                                                                                                                                                                                            tCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTACGTATTTAACTTCAACCGCCATTTGCAGCCTCTCATAATAACTGTGATTTTATACAGTATATTTCTTTTCGGTTGAGAAATCAACATCAGCAATAAAG‑ACACACGCAAACGTTTTCGTTTATACTGCGCGCGGAATTAATCAGGGGATATTCGTTATGACGTTATTAGGCACTGCGCTGCGTCCGGCAGCAACTCGCGTGATGTTATTAGGCTCCGGTGAACTGGGTAaagaag              <  1:957050/289‑1 (MQ=255)
                                                                                                                                                                                                                                                                   ccTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTACGTATTTAACTTCAACCGCCATTTGCAGCCTCTCATAATAACTGTGATTTTATACAGTATATTTCTTTTCGGTTGAGAAATCAACATCAGCAATAAAG‑ACACACGCAAACGTTTTCGTTTATACTGCGCGCGGAATTAATCAGGGGATATTCGTTATGACGTTATTAGGCACTGCGCTGCGTCCGGCAGCAACTCGCGTGATGTTATTAGGCTCCGGTGAACTGGGTAAAGAAGTGGCaa        >  1:873173/1‑288 (MQ=255)
                                                                                                                                                                                                                                                                                   |||                                                                                                                                                                                                                                                                                    
AGAAAGCATGGTACAAATTGTCAGGAGCGCAAGTTGCTTCAGGCCGCGTGACTGGCATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGTGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGGCTAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCAGGTGTCAAGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAAGCTCATTTTCTCTTCGCCCTCACGAATGACTACGTATTTAACTTCAACCGCCATTTGCAGCCTCTCATAATAACTGTGATTTTATACAGTATATTTCTTTTCGGTTGAGAAATCAACATCAGCAATAAAG‑ACACACGCAAACGTTTTCGTTTATACTGCGCGCGGAATTAATCAGGGGATATTCGTTATGACGTTATTAGGCACTGCGCTGCGTCCGGCAGCAACTCGCGTGATGTTATTAGGCTCCGGTGAACTGGGTAAAGAAGTGGCAATCGAGT  >  CP042583/1611138‑1611690

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A