Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A6 F210 I1 R1 4928 340.1 5480506 96.9% 5310610 252.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA CP042583 1,611,413 3 bp→CGA intergenic (–/–) – / – –/–

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0425831,611,4130GC99.7% 763.5 / NA 318intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base G (0/0);  major base C (143/174);  minor base T (1/0);  total (144/174)
Fisher's exact test for biased strand distribution p-value = 4.53e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*CP0425831,611,4140CG99.7% 755.8 / NA 318intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base C (0/0);  major base G (143/174);  minor base T (1/0);  total (144/174)
Fisher's exact test for biased strand distribution p-value = 4.53e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*CP0425831,611,4150TA99.7% 765.2 / NA 318intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base T (0/0);  major base A (143/174);  minor base C (1/0);  total (144/174)
Fisher's exact test for biased strand distribution p-value = 4.53e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 318 total aligned reads displayed.

GAGAAAGCATGGTACAAATTGTCAGGAGCGCAAGTTGCTTCAGGCCGCGTGACTGGCATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGTGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGGCTAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCAGGTGTCAAGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAAGCTCATTTTCTCTTCGCCCTCACGAATGACTACGTATTTAACTTCAACCGCCATTTGCAGCCTCTCATAATAACTGTGATTTTATACAGTATATTTCTTTTCGGTTGAGAAATCAACATCAGCAATAAAGACACACGCAAACGTTTTCGTTTATACTGCGCGCGGAATTAATCAGGGGATATTCGTTATGACGTTATTAGGCACTGCGCTGCGTCCGGCAGCAACTCGCGTGATGTTATTAGGCTCCGGTGAACTGGGTAAAGAAGTGGCAATCGAGTGTC  >  CP042583/1611137‑1611693
                                                                                                                                                                                                                                                                                    |||                                                                                                                                                                                                                                                                                      
       aaTGGTACAAATGGTCAGGGGCGAAAGTTGCTTCAGGCCGCGTGTGAGGCATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGTGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCAGGTGTCAAGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGccc                                                                                                                                                                                                                                                                        <  2:2724872/287‑1 (MQ=255)
        aTGGTACAAATTGTCAGGAGCGCAAGTTGCTTCAGGCCGCGTGTGAGGCATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGTGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCAGGTGTCAAGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTc                                                                                                                                                                                                                                                                      <  1:2687181/289‑1 (MQ=255)
            tACAAATTGTCAGGAGCGCAAGTTGCTTCAGGCCGCGTGTGAGGCATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGTGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCAGGTGTCAAGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGa                                                                                                                                                                                                                                                                  >  1:442189/1‑289 (MQ=255)
              cAAATTGTCAGGAGCGCAAGTTGCTTCAGGCCGCGTGTGAGGCATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGTGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCAGGTGTCAAGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAAt                                                                                                                                                                                                                                                                <  2:772114/289‑1 (MQ=255)
                   tGTCAGGAGCGCAAGTTGCTTCAGGCCGCGTGTGAGGCATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGTGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCAGGTGTCAAGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTa                                                                                                                                                                                                                                                           <  2:113211/289‑1 (MQ=255)
                    gTCAGGAGCGCAAGTTGCTTCAGGCCGCGTGTGAGGCATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGTGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCAGGTGTCAAGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTAc                                                                                                                                                                                                                                                          <  1:1458207/289‑1 (MQ=255)
                     tCAGGAGCGCAAGTTGCTTCAGGCCGCGTGTGAGGCATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGTGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCAGGTGTCAAGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTACg                                                                                                                                                                                                                                                         >  1:2546823/1‑289 (MQ=255)
                      cAGGAGCGCAAGTTGCTTCAGGCCGCGTGTGAGGCATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAAT‑GTGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCAGGTGTCAAGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTACGTa                                                                                                                                                                                                                                                       >  1:629718/1‑289 (MQ=255)
                          aGCGCAAGTTGCTTCAGGCCGCGTGTGAGGCATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGTGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCAGGTGTCAAGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTACGTAt                                                                                                                                                                                                                                                      <  1:847139/287‑1 (MQ=255)
                           gcgcAAGTTGCTTCAGGCCGCGTGTGAGGCATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGTGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCAGGTGTCAAGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTACGTAttt                                                                                                                                                                                                                                                    <  1:524215/288‑1 (MQ=255)
                            cgcAAGTTGCTTCAGGCCGCGTGTGAGGCATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGTGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCAGGTGTCAAGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTACGTATTTa                                                                                                                                                                                                                                                   >  1:2667528/1‑288 (MQ=255)
                            cgcAAGTTGCTTCAGGCCGCGTGTGAGGCATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGTGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCAGGTGTCAAGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTACGTATTTa                                                                                                                                                                                                                                                   >  1:1883470/1‑288 (MQ=255)
                                      ttCAGGCCGCGTGTGAGGCATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGTGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCAGGTGTCAAGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACt                                                                                                                                                                                                                                                            >  2:1675789/1‑269 (MQ=255)
                                                gtgtgaggCATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGTGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCAGGTGTCAAGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTACGTATTTAACTTCAACCGCCATTTGCAg                                                                                                                                                                                                                               <  2:2684488/282‑1 (MQ=255)
                                                gtgtgaggCATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGTGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCAGGTGTCAAGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTACGTATTTAACTTCAACCGCCATTTGCAg                                                                                                                                                                                                                               <  2:1883470/282‑1 (MQ=255)
                                                gtgtgaggCATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGTGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCAGGTGTCAAGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTACGTATTTAACTTCAACCGCCATTTGCAGc                                                                                                                                                                                                                              <  1:959253/283‑1 (MQ=255)
                                                  gtgaggCATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGTGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCAGGTGTCAAGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTACGTATTTAACTTCAACCGCCATTTGCAGCct                                                                                                                                                                                                                            <  1:2198981/285‑1 (MQ=255)
                                                  gtgaggCATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGTGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCAGGTGTCAAGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTACGTATTTAACTTCAACCGCCATTTGCAGCct                                                                                                                                                                                                                            <  1:1548907/285‑1 (MQ=255)
                                                  gtgaggCATCTTCCTCTTCGGAATCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGTGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCAGGTGTCAAGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTACGTATTTAACTTCAACCGCCATTTGCAGCct                                                                                                                                                                                                                            <  2:143485/285‑1 (MQ=255)
                                                  gtgaggCATCTTCCGCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGTGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCAGGTGTCAAGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTACGTATTTAACTTCAACCGCCATTTGCAGCct                                                                                                                                                                                                                            <  1:102779/285‑1 (MQ=255)
                                                     gtgcttCTTCCCCTTCGGTTTCAGCACCGACGACCTTTTGGGACGGTAATTTGCCGGTTTTCAGAATGGTGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCAGGTGTCAAGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTACGTATTTAACTTCAACCGCCATTTGCAGCctct                                                                                                                                                                                                                          <  2:1455413/283‑1 (MQ=255)
                                                          tCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGTGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCAGGTGTCAAGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTACGTATTTAACTTCAACCGCCATTTGCAGCCTCTCataat                                                                                                                                                                                                                    <  1:698193/289‑1 (MQ=255)
                                                          tCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGTGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCAGGTGTCAAGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTACGTATTTAACTTCAACCGCCATTTGCAGCCTCTCataat                                                                                                                                                                                                                    >  1:14312/1‑289 (MQ=255)
                                                               ctctTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGTGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCAGGTGTCAAGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTACGTATTTAACTTCAACCGCCATTTGCAGCCTCTCATAATAACtg                                                                                                                                                                                                               <  2:2546823/289‑1 (MQ=255)
                                                               ctctTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGTGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCAGGTGTCAAGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTACGTATTTAACTTCAACCGCCATTTGCAGCCTCTCATAATAACtg                                                                                                                                                                                                               <  1:1646170/289‑1 (MQ=255)
                                                               ctctTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGTGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCAGGTGTCAAGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTACGTATTTAACTTCAACCGCCATTTGCAGCCTCTCATAATAACtg                                                                                                                                                                                                               <  1:1306422/289‑1 (MQ=255)
                                                                        ttCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGTGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCAGGTGTCAAGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTACGTATTTAACTTCAACCGCCATTTGCAGCCTCTCATAATAACTGTGATTTtat                                                                                                                                                                                                      >  2:282721/1‑289 (MQ=255)
                                                                         tCAGCACCGCCGACCTGTGCAGACCGTAATTTGCCGGTTTTCATAATCGTGTTCATCACATCTTTTTGTTCTTCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTTGAGAATTTGTCAGCCAGGTGTCAAGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCTTCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTACGTATTTAACTTCAACCGCCATTTGCAGCCTCTCATAATAACTTTGATTTtata                                                                                                                                                                                                     <  1:139266/289‑1 (MQ=255)
                                                                         tCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGTGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCAGGTGTCAAGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTACGTATTTAACTTCAACCGCCATTTGCAGCCTCTCATAATAACTGTGATTTtata                                                                                                                                                                                                     <  1:1449058/289‑1 (MQ=255)
                                                                         tCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGTGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCAGGTGTCAAGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTACGTATTTAACTTCAACCGCCATTTGCAGCCTCTCATAATAACTGTGATTTtata                                                                                                                                                                                                     <  1:1250161/289‑1 (MQ=255)
                                                                         tCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGTGCTCAGCACATCTTTTTGTTCGGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCAGGTGTCAAGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTACGTATTTAACTTCAACCGCCATTTGCAGCCTCTCATAATAACTGTGATTTtata                                                                                                                                                                                                     <  2:1780539/289‑1 (MQ=255)
                                                                           aGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGTGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCAGGTGTCAAGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTACGTATTTAACTTCAACCGCCATTTGCAGCCTCTCATAATAACTGTGATTTTATACa                                                                                                                                                                                                   >  1:1618775/1‑289 (MQ=255)
                                                                                  acgacCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGTGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCAGGTGTCAAGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTACGTATTTAACTTCAACCGCCATTTGCAGCCTCTCATAATAACTGTGATTTTATACAGTATAtt                                                                                                                                                                                            >  1:2497975/1‑289 (MQ=255)
                                                                                         gtgGGGACGGTAATTTGCCGGTTTTCAGAATGGTGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCAGGTGTCAAGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTACGTATTTAACTTCAACCGCCATTTGCAGCCTCTCATAATAACtg                                                                                                                                                                                                               >  2:1916086/1‑263 (MQ=255)
                                                                                            gggACGGTAATTTGCCGGTTTTCAGAATGGTGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCAGGTGTCAAGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTACGTATTTAACTTCAACCGCCATTTGCAGCCTCTCATAATAACTGTGATTTTATACAGTATATTTCTTTTCGGt                                                                                                                                                                                  >  1:769628/1‑289 (MQ=255)
                                                                                              gACGGTAATTTGCCGGTTTTCAGAATGGTGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCAGGTGTCAAGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTACGTATTTAACTTCAACCGCCATTTGCAGCCTCTCATAATAACTGTGATTTTATACAGTATATTTCTTTTCGGtt                                                                                                                                                                                 <  1:1780576/288‑1 (MQ=255)
                                                                                               aCGGTAATTTGCCGGTTTTCAGAATGGTGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCAGGTGTCAAGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTACGTATTTAACTTCAACCGCCATTTGCAGCCTCTCATAATAACTGTGATTTTATACAGTATATTTCTTTTCGGTTga                                                                                                                                                                               >  2:1593030/1‑289 (MQ=255)
                                                                                                cGGTAATTTGCCGGTTTTCAGAATGGTGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCAGGTGTCAAGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTACGTATTTAACTTCAACCGCCATTTGCAGCCTCTCATAATAACTGTGATTTTATACAGTATATTTCTTTTCGGTTgag                                                                                                                                                                              >  2:2694867/1‑289 (MQ=255)
                                                                                                cGGTAATTTGCCGGTTTTCAGAATGGTGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCAGGTGTCAAGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTACGTATTTAACTTCAACCGCCATTTGCAGCCTCTCATAATAACTGTGATTTTATACAGTATATTTCTTTTCGGTTga                                                                                                                                                                               <  2:108192/288‑1 (MQ=255)
                                                                                                 ggTAATTTGCCGGTTTTCAGAATGGTGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCAGGTGTCAAGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACt                                                                                                                                                                                                                                                            >  1:424335/1‑210 (MQ=255)
                                                                                                 ggTAATTTGCCGGTTTTCAGAATGGTGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCAGGTGTCAAGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTACGTATTTAACTTCAACCGCCATTTGCAGCCTCTCATAATAACtg                                                                                                                                                                                                               >  2:852694/1‑255 (MQ=255)
                                                                                                 ggTAATTTGCCGGTTTTCAGAATGGTGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCAGGTGTCAAGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTACGTATTTAACTTCAACCGCCATTTGCAGCCTCTCATAATAACTGTGAtt                                                                                                                                                                                                          <  2:1319045/260‑1 (MQ=255)
                                                                                                        tGCCGGTTTTCAGAATGGTGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCAGGTGTCAAGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTACGTATTTAACTTCAACCGCCATTTGCAGCCTCTCATAATAACTGTGATTTTATACAGTATATTTCTTTTCGGTTGAGAAATCAAc                                                                                                                                                                      <  1:509567/289‑1 (MQ=255)
                                                                                                          ccGGTTTTCAGAATGGTGCTCATCCCATCTTTTTGTTCGGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCAGGTGTCAAGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTACGTATTTAACTTCAACCGCCATTTGCAGCCTCTCATAATAACTGTGATTTTATACAGTATATTTCTTTTCGGTTGAGAAATCAACAt                                                                                                                                                                    <  2:1257889/289‑1 (MQ=255)
                                                                                                            ggTTTTCAGAATGGTGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCAGGTGTCAAGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTACGTATTTAACTTCAACCGCCATTTGCAGCCTCTCATAATAACTGTGATTTTATACAGTATATTTCTTTTCGGTTGAGAAATCAACATCa                                                                                                                                                                  <  1:754451/289‑1 (MQ=255)
                                                                                                                          tGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCAGGTGTCAAGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTACGTATTTAACTTCAACCGCCATTTGCAGCCTCTCATAATAACTGTGATTTTATACAGTATATTTCTTTTCGGTTGAGAAATCAACATc                                                                                                                                                                   >  2:200219/1‑274 (MQ=255)
                                                                                                                          tGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCAGGTGTCAAGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTACGTATTTAACTTCAACCGCCATTTGCAGCCTCTCATAATAACTGTGATTTTATACAGTATATTTCTTTTCGGTTGAGAAATCAACATc                                                                                                                                                                   <  1:200219/274‑1 (MQ=255)
                                                                                                                          tGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCAGGTGTCAAGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTACGTATTTAACTTCAACCGCCATTTGCAGCCTCTCATAATAACTGTGATTTTATACAGTATATTTCTTTTCGGTTGAGAAATCAACATCAGCAATAAAGacac                                                                                                                                                     >  1:1114274/1‑288 (MQ=255)
                                                                                                                            cTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCAGGTGTCAAGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTACGTATTTAACTTCAACCGCCATTTGCAGc                                                                                                                                                                                                                              >  1:1911442/1‑213 (MQ=255)
                                                                                                                            cTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCAGGTGTCAAGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTACGTATTTAACTTCAACCGCCATTTGCAGc                                                                                                                                                                                                                              <  2:1911442/213‑1 (MQ=255)
                                                                                                                            cTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCAGGTGTCAAGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTACGTATTTAACTTCAACCGCCATTTGCAGCCTCTCATAATAACTGTGATTTTATACAGTATATTTCTTTTCGGTTGAGAAATCAACATCAGCAATAAAGacacac                                                                                                                                                   >  2:2625854/1‑288 (MQ=255)
                                                                                                                                    aTCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCAGGTGTCAAGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTACGTATTTAACTTCAACCGCCATTTGCAg                                                                                                                                                                                                                               >  2:1743799/1‑204 (MQ=255)
                                                                                                                                    aTCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCAGGTGTCAAGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTACGTATTTAACTTCAACCGCCATTTGCAg                                                                                                                                                                                                                               <  1:1743799/204‑1 (MQ=255)
                                                                                                                                    aTCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCAGGTGTCAAGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTACGTATTTAACTTCAACCGCCATTTGCAGCct                                                                                                                                                                                                                            <  1:1333746/207‑1 (MQ=255)
                                                                                                                                    aTCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCAGGTGTCAAGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTACGTATTTAACTTCAACCGCCATTTGCAGCCTCTCATAATAACTGTGATTTTATACAGTATATTTCTTTTCGGTTGAGAAATCAACATCAGCAATAAAGACACACGCAAACGtt                                                                                                                                          >  1:2335342/1‑289 (MQ=255)
                                                                                                                                    aTCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCAGGTGTCAAGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTACGTATTTAACTTCAACCGCCATTTGCAGCCTCTCATAATAACTGTGATTTTATACAGTATATTTCTTTTCGGTTGAGAAATCAACATCAGCAATAAAGACACACGCAAACGtt                                                                                                                                          <  1:1924010/289‑1 (MQ=255)
                                                                                                                                      cTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGATTTTGTCAGCCAGGTGTCAAGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTACGTATTTAACTTCAACCGCCATTTGCAGCCTCTCATAATAACTGTGATTTTATACAGTATATTTCTTTTCGGTTGAGTAATCAACATCAGCAATAAAGACACACGCAAACGtttt                                                                                                                                        >  1:860829/1‑289 (MQ=255)
                                                                                                                                                tGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCAGGTGTCAAGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTACGTATTTAACTTCAACCGCCATTTGCa                                                                                                                                                                                                                                <  1:1173398/191‑1 (MQ=255)
                                                                                                                                                tGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCAGGTGTCAAGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTACGTATTTAACTTCAACCGCCATTTGCa                                                                                                                                                                                                                                >  2:1173398/1‑191 (MQ=255)
                                                                                                                                                      ccatagcgaaaGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGGGAATTTGTCAGCCAGGTGTCAAGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTACGTATTTAACTTCAACCGCCATTTGCAGCCTCTCATAATAACTGTGATTTTATACAGTATATTTCTTTTCGGTTGAGAAATCAACATCAGCAATAAAGACACACGCAAACGTTTTCGTTTATACTgcgcg                                                                                                                         <  2:479998/279‑1 (MQ=255)
                                                                                                                                                          agcgaaaGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCAGGTGTCAAGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTACGTATTTAACTTCAACCGCCATTTGCAGCCTCTCATAATAACTGTGATTTTATACAGTATATTTCTTTTCGGTTGAGAAATCAACATCAGCAATAAAGACACACGCAAACGTTTTCGTTTATACTGCGCGCGGaa                                                                                                                    >  1:1841565/6‑289 (MQ=255)
                                                                                                                                                               aaGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCAGGTGTCAAGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGTCCTCACGAATGACTACGTATTTAACTTCAACCGCCATTTGCa                                                                                                                                                                                                                                <  2:2380758/176‑1 (MQ=255)
                                                                                                                                                               aaGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCAGGTGTCAAGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTACGTATTTAACTTCAACCGCCATTTGCAGCCTCTCATAATAACTGTGATTTTATACAGTATATTTCTTTTCGGTTGAGAAATCAACATCAGCAATAAAGACACACGCAAACGTTTTCGTTTATACTGCGCGCGGAATTaa                                                                                                                >  1:489265/1‑288 (MQ=255)
                                                                                                                                                                aGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCAGGTGTCAAGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTACGTATTTAACTTCAACCGCCATTTGCAGc                                                                                                                                                                                                                              <  1:1800389/177‑1 (MQ=255)
                                                                                                                                                                aGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCAGGTGTCAAGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTACGTATTTAACTTCAACCGCCATTTGCAGc                                                                                                                                                                                                                              >  2:1800389/1‑177 (MQ=255)
                                                                                                                                                                aGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCAGGTGTCAAGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTACGTATTTAACTTCAACCGCCATTTGCAGCCTCTCATAATAACtg                                                                                                                                                                                                               >  1:197777/1‑192 (MQ=255)
                                                                                                                                                                aGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCAGGTGTCAAGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTACGTATTTAACTTCAACCGCCATTTGCAGCCTCTCATAATAACtg                                                                                                                                                                                                               <  1:304553/192‑1 (MQ=255)
                                                                                                                                                                   gCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCAGGTGTCAAGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTACGTATTTAACTTCAACCGCCATTTGCAGCCTCTCATAATAACTGTGATTTTATACAGTATATTTCTTTTCGGTTGAGAAATCAACATCAGCAATAAAGACACACGCAAACGTTTTCGTTTATACTGCGCGCGGAATTAATCa                                                                                                             <  1:1593030/287‑1 (MQ=255)
                                                                                                                                                                    cTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCAGGTGTCAAGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTCCGTATTTAACTTCAACCGCCATTTGCAGCCTCTCATAATAACTGTGATTTTATACAGTATATTTCTTTTCGGTTGAGAAATCAACATCAGCAATACACACACACGAAAACGTTTTCGTTTATACTTCGCGCGGAATTAATCAggg                                                                                                          >  2:96202/1‑289 (MQ=255)
                                                                                                                                                                        aCGTTGCTCGTATTCCATTTGCACTGGAGAATTTGTCAGCCAGGTGTCAAGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTACGTATTTAACTTCAACCGCCATTTGCAGCCTCTCATAATAACTGTGATTTTATACAGTATATTTCTTTTCGGTTGAGAAATCAACATCAGCAATAAAGACACACGCAAACGTTTTCGTTTATACTGCGCGCGGAATTAATCAGGGGata                                                                                                      <  2:2253859/289‑1 (MQ=255)
                                                                                                                                                                            tGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCAGGTGTCAAGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTACGTATTTAACTTCAACCGCCATTTGCAGCCTCTCATAATAACTGTGATTTTATACAGTATATTTCTTTTCGGTTGAGAAATCAACATCAGCAATAAAGACACACGCAAACGtt                                                                                                                                          >  2:740605/1‑249 (MQ=255)
                                                                                                                                                                            tGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCAGGTGTCAAGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTACGTATTTAACTTCAACCGCCATTTGCAGCCTCTCATAATAACTGTGATTTTATACAGTATATTTCTTTTCGGTTGAGAAATCAACATCAGCAATAAAGACACACGCAAACGtt                                                                                                                                          <  1:740605/249‑1 (MQ=255)
                                                                                                                                                                             gCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCAGGTGTCAAGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTACGTATTTAACTTCAACCGCCATTTGCAGCCTCTCATAATAACTGTGATTTTATACAGTATATTTCTTTTCGGTTGAGAAATCAACATCAGCAATAAAGACACACGCAAACGTTTTCGTTTATACTGCGCGCGGAATTAATCAGGGGATATTCGt                                                                                                 >  2:531391/1‑289 (MQ=255)
                                                                                                                                                                               tCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCAGGTGTCAAGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTACGTATTTAACTTCAACCGCCATTTGCAGCCTCTCATAATAACTGTGATTTTATACAGTATATTTCTTTTCGGTTGAGAAATCAACATCAGCAATAAAGACACACGCAAACGTTTTCGTTTATACTGCGCGCGGAATTAATCAGGGGATATTCGTTa                                                                                               <  2:1841565/289‑1 (MQ=255)
                                                                                                                                                                                 gTCTTCCATTTGCACTGGAGAATTTGTCAGCCAGGTGTCAAGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGa                                                                                                                                                                                                                                                              <  2:1493228/128‑1 (MQ=255)
                                                                                                                                                                                 gTCTTCCATTTGCACTGGAGAATTTGTCAGCCAGGTGTCAAGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGa                                                                                                                                                                                                                                                              >  1:1493228/1‑128 (MQ=255)
                                                                                                                                                                                 gTCTTCCATTTGCACTGGAGAATTTGTCAGCCAGGTGTCAAGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTACGTATTTAACTTCAACCGCCATTTGCAGCCTCTCATAATAACTGTGATTTTATACAGTATATTTCTTTTCGGTTGAGAAATCAACATCAGCAATAAAGACACACGCAAACGTTTTCGTTTATACTGCGCGCGGAATTAATCAGGGGATATTCGTTATg                                                                                             <  2:629718/289‑1 (MQ=255)
                                                                                                                                                                                   tttCCATTTGCCATTGAGAATTTGTAAGCCAGGTGTCAAGCAGATCTGCCGTATCAAGCAGTTTGTCATAAGCATCGGCTTCCTTTTTTCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTACGTATTTAACTTCAACCGCCTTTTGCAGCCTCTCATAATAACTGTGATTTTATACAGTATATTTCTTTTCGGTTGAGAAATCAACATCAGCAATAAAGACACACGCAAACGTTTTCGTTTATACTGCGCGCGGAATTAATCAGGGGATATTCGTTATGa                                                                                            <  2:822004/287‑1 (MQ=255)
                                                                                                                                                                                      ccATTTGCACTGGAGAATTTGTCAGCCAGGTGTCAAGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTACGTATTTAACTTCAACCGCCATTTGCAGCCTCTCATAATAACTGTGATTTTATACAGTATATTTCTTTTCGGTTGAGAAATCAACATCAGCAATAAAGACACACGCAAACGTTTTCGTTTATACTGCGCGCGGAATTAATCAGGGGATATTCGTTATGACGtt                                                                                        >  2:1344421/1‑289 (MQ=255)
                                                                                                                                                                                            gCACTGGAGAATTTGTCAGCCAGGTGTCAAGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTACGTATTTAACTTCAACCGCCATTTGCAGCCTCTCATAATAACTGTGATTTTATACAGTATATTTCTTTTCGGTTGAGAAATCAACATCAGCAATAAAGACACACGCAAACGTTTTCGTTTATACTGCGCGCGGaa                                                                                                                    >  1:2421362/1‑255 (MQ=255)
                                                                                                                                                                                              aCTGGAGAATTTGTCAGCCAGGTGTCAAGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTACGTATTTAACTTCAACCGCCATTTGCAGCCTCTCATAATAACTGTGATTTTATACAGTATATTTCTTTTCGGTTGAGAAATCAACATCAGCAATAAAGACACACGCAAACGTTTTCGTTTATACTGCGCGCGGAATTAATCAGGGGATATTCGTTATGACGTTATTAGGCa                                                                                >  2:757085/1‑289 (MQ=255)
                                                                                                                                                                                                  gagaATTTGTCAGCCAGGTGTCAAGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTACGTATTTAACTTCAACCGCCATTTGCAGCCTCTCATAATAACTGTGATTTTATACAGTATATTTCTTTTCGGTTGAGAAATCAACATCAGCAATAAAGACACACGCAAACGTTTTCGTTTATACTGCGCGCGGAATTAATCAGGGGata                                                                                                      <  2:2060758/263‑1 (MQ=255)
                                                                                                                                                                                                  gagaATTTGTCAGCCAGGTGTCAAGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTACGTATTTAACTTCAACCGCCATTTGCAGCCTCTCATAATAACTGTGATTTTATACAGTATATTTCTTTTCGGTTGAGAAATCAACATCAGCAATAAAGACACACGCAAACGTTTTCGTTTATACTGCGCGCGGAATTAATCAGGGGATATTCGTTATGa                                                                                            <  1:1277887/273‑1 (MQ=255)
                                                                                                                                                                                                  gagaATTTGTCAGCCAGGTGTCAAGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTACGTATTTAACTTCAACCGCCATTTGCAGCCTCTCATAATAACTGTGATTTTATACAGTATATTTCTTTTCGGTTGAGAAATCAACATCAGCAATAAAGACACACGCAAACGTTTTCGTTTATACTGCGCGCGGAATTAATCAGGGGATATTCGTTATGa                                                                                            <  2:650017/273‑1 (MQ=255)
                                                                                                                                                                                                  gagaATTTGTCAGCCAGGTGTCAAGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTACGTATTTAACTTCAACCGCCATTTGCAGCCTCTCATAATAACTGTGATTTTATACAGTATATTTCTTTTCGGTTGAGAAATCAACATCAGCAATAAAGACACACGCAAACGTTTTCGTTTATACTGCGCGCGGAATTAATCAGGGGATATTCGTTATGa                                                                                            >  1:650017/1‑273 (MQ=255)
                                                                                                                                                                                                  gagaATTTGTCAGCCAGGTGTCAAGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTACGTATTTAACTTCAACCGCCATTTGCAGCCTCTCATAATAACTGTGATTTTATACAGTATATTTCTTTTCGGTTGAGAAATCAACATCAGCAATAAAGACACACGCAAACGTTTTCGTTTATACTGCGCGCGGAATTAATCAGGGGATATTCGTTATGACGTTATTAGGCActgc                                                                            >  1:2652097/1‑289 (MQ=255)
                                                                                                                                                                                                          gTCAGCCAGGTGTCAAGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTACGTATTTAACTTCAACCGCCATTTGCAGCCTCTCATAATAACTGTGATTTTATACAGTATATTTCTTTTCGGTTGAGAAATCAACATCAGCAATAAAGACACACGCAAACGTTTTCGTTTATACTGCGCGCGGAATTAATCAGGGGATATTCGTTATGACGTTATTAGGCACTGCGCTGCGTc                                                                    <  1:2722915/289‑1 (MQ=255)
                                                                                                                                                                                                               ccAGGTGTCAAGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTACGTATTTAACTTCa                                                                                                                                                                                                                                             >  1:1534294/1‑115 (MQ=255)
                                                                                                                                                                                                                        aaGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTACGTATTTAACTTCAACCGCCATTTGCAGCCTCTCATAATAACTGTGATTTTATACAGTATATTTCTTTTCGGTTGAGAAATCAACATCAGCAATAAAGACACACGCAAACGTTTTCGTTTATACTGCGCGCGGAATTAATCAGGGGATATTCGTTATGACGTTATTAGGCACTGCGCTGCGTCCGGCAGCAACTcgc                                                      >  1:1695338/1‑289 (MQ=255)
                                                                                                                                                                                                                             gATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTACGTATTTAACTTCAACCGCCATTTGCAGCCTCTCATAATAACTGTGATTTTATACAGTATATTTCTTTTCGGTTGAGAAATCAACATCAGCAATAAAGACACACGCAAACGTTTTCGTTTATACTGCGCGCGGAATTAATCAGGGGATATTCGTTATGACGTTATTAGGCACTGCGCTGCGTCCGGCAGCAACTCGCGTGAt                                                 >  2:1976663/1‑289 (MQ=255)
                                                                                                                                                                                                                              aTCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGa                                                                                                                                                                                                                                                              >  2:1298492/1‑83 (MQ=255)
                                                                                                                                                                                                                              aTCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTACGTATTTAACTTCAACCGCCATTTGCAGCCTCTCATAATAACTGTGATTTTATACAGTATATTTCTTTTCGGTTGAGAAATCAACATAAGCAATAACGACACACGCAAACGTTTTCGTTTATACTTCGCGGGGACTTAATCAGGGGATATTCGTTATGACGTTATTAGGCACTGCGCTGCGTCCGGAAGCACCACGCGTTAtt                                                >  2:2408696/1‑288 (MQ=255)
                                                                                                                                                                                                                                ccgccgTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTACGTATTTAACTTCAACCGCCATTTGCAGCCTCTCATAATAACTGTGATTTtata                                                                                                                                                                                                     >  2:2474235/1‑138 (MQ=255)
                                                                                                                                                                                                                                       aTCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTACGTATTTAACTTCAACCGCCATTTGCAGCCTCTCATAATAACTGTGATTTTATACAGTATATTTCTTTTCGGTTGAGAAATCAACATCAGCAATAAAGACACACGCAAACGTTTTCGTTTATACTGCGCGCGGAATTAATCAGGGGATATTCGTTATGACGTTATTAGGCACTGCGCTGCGTCCGGCAGCAACTCGCGTGATGTTATTAg                                         >  1:2623859/1‑287 (MQ=255)
                                                                                                                                                                                                                                                tttGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTACGTATTTAACTTCAACCGCCATTTGCAGCCTCTCATAATAACTGTGATTTTATACAGTATATTTCTTTTCGGTTGAGAAATCAACATCAGCAATAAAGACACACGCAAACGTTTTCGTTTATACTGCGCGCGGAATTAATCAGGGGATATTCGTTATGACGTTATTAGGCACTGCGCTGCGTCCGGCAGTAACTCGCGTGATGTTATTAGGCTCCGGTGaa                              <  2:1549387/289‑1 (MQ=255)
                                                                                                                                                                                                                                                  tGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTACGTATTTAACTTCAACCGCCATTTGCAGCCTCTCATAATAACTGTGATTTTATACAGTATATTTCTTTTCGGTTGAGAAATCAACAt                                                                                                                                                                    >  2:433467/1‑153 (MQ=255)
                                                                                                                                                                                                                                                      aTAAGCATCGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTACGTATTTAACTTCAACCGCCATTTGCAGCCTCTCATAATAACTGTGATTTTATACAGTATATTTCTTTTCGGTTGAGAAATCAACATCAGCAATAAAGACACACGCAAACGTTTTCGTTTATACTGCGCGCGGAATTAATCAGGGGATATTCGTTATGACg                                                                                          >  2:371769/1‑223 (MQ=255)
                                                                                                                                                                                                                                                              cGGCTTCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTACGTATTTAACTTCAACCGCCATTTGCAGCCTCTCATAATAACTGTGATTTTATACAGTATATTTCTTTTCGGTTGAGAAATCAACATCAGCAATAAAGACACACGCAAACGTTTTCGTTTATACTGCGCGCGGAATTAATCAGGGGATATTCGTTATGACGTTATTAGGCACTGCGCTGCGTCCGGCAGCAACTCGCGTGATGTTATTAGGCTCCGGTGAACTGGGTAAAGAAGt                >  1:2043692/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                  ttCCTTTTTGCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTACGTATTTAACTTCAACCGCCATTTGCAGCCTCTCATAATAACTGTGATTTTATACAGTATATTTCTTTTCGGTTGAGAAATCAACATCAGCAATAAAGACACACGCAAACGTTTTCGTTTATACTGCGCGCGGAATTAATCAGGGGatat                                                                                                     >  1:995631/1‑200 (MQ=255)
                                                                                                                                                                                                                                                                           gCTGGTAAACGACATTTTCTCTTCGCCCTCACGAATGACTACGTATTTAACTTCAACCGCCATTTGCAGCCTCTCATAATAACTGTGATTTTATACAGTATATTTCTTTTCGGTTGAGAAATCAACATCAGCAATAAAGACACACGCAAACGTTTTCGTTTATACTGCGCGCGGAATTAATCAGGGGATATTCGTTATGACGTTATTAGGCACTGCGCTGCGTCCGGCAGCAACTCGCGTGATGTTATTAGGCTCCGGTGAACTGGGTAAAGAAGTGGCAATCGAgtg    >  1:827494/1‑288 (MQ=255)
                                                                                                                                                                                                                                                                                    |||                                                                                                                                                                                                                                                                                      
GAGAAAGCATGGTACAAATTGTCAGGAGCGCAAGTTGCTTCAGGCCGCGTGACTGGCATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGTGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGGCTAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCAGGTGTCAAGCAGATCCGCCGTATCAAGCATTTTGTCATAAGCATCGGCTTCCTTTTTGCTGGTAAAGCTCATTTTCTCTTCGCCCTCACGAATGACTACGTATTTAACTTCAACCGCCATTTGCAGCCTCTCATAATAACTGTGATTTTATACAGTATATTTCTTTTCGGTTGAGAAATCAACATCAGCAATAAAGACACACGCAAACGTTTTCGTTTATACTGCGCGCGGAATTAATCAGGGGATATTCGTTATGACGTTATTAGGCACTGCGCTGCGTCCGGCAGCAACTCGCGTGATGTTATTAGGCTCCGGTGAACTGGGTAAAGAAGTGGCAATCGAGTGTC  >  CP042583/1611137‑1611693

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A