Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A4 F210 I1 R1 4930 262.8 3829204 96.6% 3699011 272.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA CP042583 1,633,666 3 bp→TCG intergenic (–/–) – / – –/–

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0425831,633,6660AT98.2% 376.9 / NA 168intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base A (0/0);  major base T (89/74);  minor base G (2/1);  total (93/75)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*CP0425831,633,6670GC98.8% 373.4 / ‑6.0 168intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base G (2/0);  new base C (90/74);  total (93/75)
Fisher's exact test for biased strand distribution p-value = 5.03e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.96e-01
*CP0425831,633,6680CG99.4% 387.9 / NA 168intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base C (0/1);  new base G (92/74);  total (93/75)
Fisher's exact test for biased strand distribution p-value = 4.49e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 168 total aligned reads displayed.

GTTGGTTTTCTCCCTGCGTTAACGCACAATACGCCACTTTCTTTTTCCCGGATTTTTACGTTATGTCTCACCGCGACACGCTATTTTCTGCCCCTATCGCCAGACTGGGCGACTGGACCTTTGATGAACGGGTAGCTGAAGTCTTCCCGGATATGATCCAGCG‑TTCCGTACCCGGCTATTCCAATATTATTTCCATGATTGGTATGTTAGCCGAGCGCTTCGTTCAACCTGGTACGCAGGTTTACGATCTGGGTTGTTCTCTGGGCGCGGCGACG‑CTCAGCGTGCGTCGCAACATTCATCATGATAATTGCAAAATTATTGCCATCGACAACTCCCCGGCGATGATTGAACGCTGCCGTCGTCATATTGACGCCTATAAAGCCCCTACGCCAGTAGACGTCATTGAAGGTGATATTCGCGATATCGCCATTGAAAACGCAAGCATGGTGGTGCTGAATTTTACCCTGCAAT‑TCCTGGAACCTTCCGAGCGCCAGGCGTTA‑CTGGATAAAATTTATCAAGGGCTGAACCCCGGCGGCGCGCTGGTGCTTAGCGAAAAATT  >  CP042583/1633388‑1633946
                                                                                                                                                                                                                                                                                        |||                                                                                                                                                                                                                                                                                        
gTTGGTTTTCTCCCTGCGTTAGCGCACAATACGCCACTTTCTTTTTCCCGGATTTTTACGTTATGTCTCACCGCGTCACGCTATTTTCTGCCCCTATCGCCAGACTGGGCGACTGGACCTTTGATGAACGGGTAGCTGAAGTCTTCCCGGATATGATCCAGCG‑TTCCGTACCCGGCTATTCCAATATTATTTCCATGATTGGTATGTTAGCCGAGCGCTTCGTTCAACCTGGTACGCAGGTTTACGATCTGGGTTGTTCTCTGGGCGCGGCGACG‑CTCTCGGTGCGTCg                                                                                                                                                                                                                                                                                  <  2:789712/289‑1 (MQ=255)
 ttGGTTTTCTCCCTGCGTTAGCGCACAATACGCCACTTTCTTTTTCCCGGATTTTTACGTTATGTCTCACCGCGACACGCTATTTTCTGCCCCTATCGCCAGACTGGGCGACTGGACCTTTGATGAACGGGTAGCTGAAGTCTTCCCGGATATGATCCAGCG‑TTCCGTACCCGGCTATTCCAATATTATTTCCATGATTGGTATGTTAGCCGAGCGCTTCGTTCAACCTGGTACGCAGGTTTACGATCTGGGTTGTTCTCTGGGCGCGGCGACG‑CTCTCGGTGCGTCGc                                                                                                                                                                                                                                                                                 >  1:887745/1‑289 (MQ=255)
   ggTTTTCTCCCTGCGTTAGCGCACAATACGCCACTTTCTTTTTCCCGGATTTTTACGTTATGTCTCACCGCGACACGCTATTTTCTGCCCCTATCGCCAGACTGGGCGACTGGACCTTTGATGAACGGGTAGCTGAAGTCTTCCCGGATATGATCCAGCG‑TTCCGTACCCGGCTATTCCAATATTATTTCCATGATTGGTATGTTAGCCGAGCGCTTCGTTCAACCTGGTACGCAGGTTTACGATCTGGGTTGTTCTCTGGGCGCGGCGACGCCTCCG‑GTGCGTCGCa                                                                                                                                                                                                                                                                                >  2:1198039/1‑288 (MQ=255)
   ggTTTTCTCCCTGCGTTAGCGCACAATACGCCACTTTCTTTTTCCCGGATTTTTACGTTATGTCTCACCGCGACACGCTATTTTCTGCCCCTATCGCCAGACTGGGCGACTGGACCTTTGATGAACGGGTAGCTGAAGTCTTCCCGGATATGATCCAGCG‑TTCCGTACCCGGCTATTCCAATATTATTTCCATGATTGGTATGTTAGCCGAGCGCTTCGTTCAACCTGGTACGCAGGTTTACGATCTGGGTTGTTCTCTGGGCGCGGCGACG‑CTCTCGGTGCGTCg                                                                                                                                                                                                                                                                                  >  1:494071/1‑286 (MQ=255)
     ttttCTCCCTGCGTTAGCGCACAATACGCCACTTTCTTTTTCCCGGATTTTTACGTTATGTCTCACCGCGACACGCTATTTTCTGCCCCTATCGCCAGACTGGGCGACTGGACCTTTGATGAACGGGTAGCTGAAGTCTTCCCGGATATGATCCAGCG‑TTCCGTACCCGGCTATTCCAATATTATTTCCATGATTGGTATGTTAGCCGAGCGCTTCGTTCAACCTGGTACGCAGGTTTACGATCTGGGTTGTTCTCTGGGCGCGGCGACG‑CTCTCGGTGCGTCGCAACa                                                                                                                                                                                                                                                                             <  2:82329/289‑1 (MQ=255)
     tgttCTCCCTTGGTTGGAGCACAGTCCGCCCCTTGCTTTTTCCCGGATTTTTACGTTATGCCTCACCGCGACACGCTATTTTCTGCCCCTATCGCCAGACTGGGCGACTGGACCTTTGATGAACGGGTAGCTGAAGTCTTCCCGGATATGATCCAGCG‑TTCCGTACCCGGCTATTCCAATATTATTTCCATGATTGGTATGTTAGCCGAGCGCTTCGTTCAACCTGGTACGCAGGTTTACGATCTGGGTTGTTCTCTGGGCGCGGCGACG‑CTCTCGGTGCGTCGCAACa                                                                                                                                                                                                                                                                             <  2:1471619/287‑1 (MQ=255)
                 gTTAGCGCACAACAAGCCAGTTTGTTTTTCCCGGGTTTTTACGTTCTGTCTCACCGCGACACGCTATTTTCTGCCCCGATCGCCAGACTGGGCGACTCGACCTTTGATGAACGGGTAGCTGAAGTCTTCCCTGATATGATACGGCG‑TTCCGTACCCGGCTATTCCAATATTATTTCCATGATTGGTATGTTAGCCGAGCGCTTCGTTCAACCTGGTACGCAGGTTTACGATCTGGGTTGTTCTCTGGGCGCGGCGACG‑CTCTCGGTGCGTCGCAACATTCATCATGATa                                                                                                                                                                                                                                                                 <  2:1785979/289‑1 (MQ=255)
                  ttAGCGCACAATACGCCACTTTCTTTTTCCCGGATTTTTACGTTATGTCTCACCGCGACACGCTATTTTCTGCCCCTATCGCCAGACTGGGCGACTGGACCTTTGATGAACGGGTAGCTGAAGTCTTCCCGGATATGATCCAGCG‑TTCCGTACCCGGCTATTCCAATATTATTTCCATGATTGGTATGTTAGCCGAGCGCTTCGTTCAACCTGGTACGCAGGTTTACGATCTGGGTTGTTCTCTGGGCGCGGCGACG‑CTCTCGGTGCGTCGCAACATTCATCACGATaa                                                                                                                                                                                                                                                                <  1:298139/289‑1 (MQ=255)
                          caATACGCCACTTTCTTTTTCCCGGATTTTTACGTTATGTCTCACCGCGACACGCTATTTTCTGCCCCTATCGCCAGACTGGGCGACTGGACCTTTGATGAACGGGTAGCTGAAGTCTTCCCGGATATGATCCAGCG‑TTCCGTACCCGGCTATTCCAATATTATTTCCATGATTGGTATGTTAGCCGAGCGCTTCGTTCAACCTGGTACGCAGGTTTATGATCTGGGTTGTTCTCTGGGCGCGGCGACG‑TCCTCGGTGCGTCGCCATATTCATTATGATAATGTCaaaa                                                                                                                                                                                                                                                        >  2:1455595/1‑289 (MQ=255)
                          caATACGCCACTTTCTTTTTCCCGGATTTTTACGTTATGTCTCACCGCGACACGCTATTTTCTGCCCCTATCGCCAGACTGGGCGACTGGACCTTTGATGAACGGGTAGCTGAAGTCTTCCCGGATATGATCCAGCG‑TTCCGTACCCGGCTATTCCAATATTATTTCCATGATTGGTATGTTAGCCGAGCGCTTCGTTCAACCTGGTACGCAGGTTTACGATCTGGGTTGTTCTCTGGGCGCGGCGACG‑CTCTCGGTGCGTCGCAACATTCCTCATGTTAATTGAaaaa                                                                                                                                                                                                                                                        >  2:620293/1‑289 (MQ=255)
                           aaTACGCCACTTTCTTTTTCCCGGATTTTTACGTTATGTCTCACCGCGACACGCTATTTTCTGCCCCTATCGCCAGACTGGGCGACTGGACCTTTGATGAACGGGTAGCTGAAGTCTTCCCGGATATGATCCAGCG‑TTCCGTACCCGGCTATTCCAATATTATTTCCATGATTGGTATGTTAGCCGAGCGCTTCGTTCAACCTGGTACGCAGGTTTACGATCTGGGTTGTTCTCTGGGCGCGGCGACG‑CTCTCGGTGCGTCGCAACATTCATCATGATAATTGCAAAat                                                                                                                                                                                                                                                       >  1:693981/1‑289 (MQ=255)
                            aTACGCCACTTTCTTTTTCCCGGATTTTTACGTTATGTCTCACCGCGACACGCTATTTTCTGCCCCTATCGCCAGACTGGGCGACTGGACCTTTGATGAACGGGTAGCTGAAGTCTTCCCGGATATGATCCAGCG‑TTCCGTACCCGGCTATTCCAATATTATTTCCATGATTGGTATGTTAGCCGAGCGCTTCGTTCAACCTGGTACGCAGGTTTACGATCTGGGTTGTTCTCTGGGCGCGGCGACG‑CTCTCGGTGCGTCGCAACATTCATCATGATAATTGCAAAatt                                                                                                                                                                                                                                                      >  1:1698064/1‑289 (MQ=255)
                             ttcgccgcTTTCTTTTGCCCCAGTTTTTACGTTGTTTCTCACCCTGTCACGCTATTTGCTGCCCCTATCACCAGACTAGGCGACTGGACCTTTGATGAACCGGTAGCTGAATTCTTCCCGGATATGATCCAGCG‑TTCCGTACCCGGCTATTCCAATATTATTTCCATGATTGGTATGTTAGCCGAGCGCTTCGTTCAACCTGGTACGCCGGTTTACGATCTGGGTTGTTCTCTGGGCGCGGCGACG‑CTCTCGGTGCGTCGCAACATTCATCATGATAATTGCAAAatta                                                                                                                                                                                                                                                     <  2:712026/287‑1 (MQ=255)
                                  cACTTTCTTTTTCCCGGATTTTTACGTTATGTCTCACCGCGACACGCTATTTTCTGCCCCTATCGCCAGACTGGGCGACTGGACCTTTGATGAACGGGTAGCTGAAGTCTTCCCGGATATGATCCAGCG‑TTCCGTACCCGGCTATTCCAATATTATTTCCACGATTGGTATGTTGGCCGAGCGCTTCGTTCAACCTGGTACGCAGGTTTACGATCTGGGTTGTTCTCTGGGCGCGGGGACG‑CTCGCGGTGCGTGCCAACATTCATCCTGCGAATTGCAAAATTATAGc                                                                                                                                                                                                                                                 >  2:875057/1‑288 (MQ=255)
                                     tttctttTTCCCGGATTTTTACGTTATGTCTCACCGCGACACGCTATTTTCTGCCCCTATCGCCAGACTGGGCGACTGGACCTTTGATGAACGGGTAGCTGAAGTCTTCCCGGATATGATCCAGCG‑TTCCGTACCCGGCTATTCCAATATTATTTCCATGATTGGTATGTTAGCCGAGCGCTTCGTTCAACCTGGTACGCAGGTTTACGATCTGGGTTGTTCTCTGGGCGCGGCGACG‑CTCTCGGTGCGTCGCAACATTCATCATGATAATTGCAAAATTATTGCCATc                                                                                                                                                                                                                                             >  1:482776/1‑289 (MQ=255)
                                       tctttTTCCCGGATTTTTACGTTATGTCTCACCGCGACACGCTATTTTCTGCCCCTATCGCCAGACTGGGCGACTGGACCTTTGATGAACGGGTAGCTGAAGTCTTCCCGGATATGATCCAGCG‑TTCCGTACCCGGCTATTCCAATATTCTTTCCATGATTGGTATGTTAGCCGAGCGCTTCGTTCACCCTGGTACGCAGGTTTACGATCTGGGTTGTTCTCTGGGCGCGGCGACC‑CCCTCGGTGCGTCGCAACATTCATCATTCTCATTGCACAATTTTTGcccttc                                                                                                                                                                                                                                            >  2:1075564/1‑284 (MQ=255)
                                                          cGTTATGTCTCACCGCGACACGCTATTTTCTGCCCCTATCGCCAGACTGGGCGACTGGACCTTTGATGAACGGGTAGCTGAAGTCTTCCCGGATATGATCCAGCG‑TTCCGTACCCGGCTATTCCAATATTATTTCCATGATTGGTATGTTAGCCGAGCGCTTCGTTCAACCTGGTACGCAGGTTTACGATCTGGGTTGTTCTCTGGGCGCGGCGACG‑CTCTCGGTGCGTCGCAACATTCATCATGATAATTGCAAAATTATTGCCATCGACAACTCCCCGGCGATGAtt                                                                                                                                                                                                                        <  1:1015116/289‑1 (MQ=255)
                                                                 tctcACCGCGACACGCTATTTTCTGCCCCTATCGCCAGACTGGGCGACTGGACCTTTGATGAACGGGTAGCTGAAGTCTTCCCGGATATGATCCAGCG‑TTCCGTACCCGGCTATTCCAATATTATTTCCATGATTGGTATGTTAGCCGAGCGCTTCGTTCAACCTGGTACGCAGGTTTACGATCTGGGTTGTTCTCTGGGCGCGGCGACG‑CTCTCGGTGCGTCGCAACATTCATCATGATAATTGCAAAATTATTGCCATCGACAACTCCCGGGCGATGATTGAAc                                                                                                                                                                                                                    >  1:1451285/1‑286 (MQ=255)
                                                                    taCCGCGACACGCTATTTTCTGACCCTACGGACAGGCTGGGCGACTGGAGCTTTGATGAACGGGTAGCTGAAGTCTTCCCGGATATGATCCAGCG‑TTCCGTACCCGGCTATTCCAATATTATTTCCATGATTGGTATGTTAGCCGAGCGCTTCGTTCAACCTGGTACGCAGGTTTACGATCTGGGTTGTTCTCTGGGCGCGGCGACG‑CTCTCGGTGCGTCGCAACATTCATCATGATAATTGCAAAATTATTGCCATCGACAACTCCCCGGCGATGATTGAACGCTGcc                                                                                                                                                                                                              <  1:9162/288‑1 (MQ=255)
                                                                     aCCGCGACACGCTATTTTCTGCCCCTATCGCCAGACTGGGCGACTGGACCTTTGATGAACGGGTAGCTGAAGTCTTCCCGGATATGATCCAGCG‑TTCCGTACCCGGCTATTCCAATATTATTTCCATGATTGGTATGTTAGCCGAGCGCTTCGTTCAACCTGGTACGCAGGTTTACGATCTGGGTTGTTCTCTGGGCGCGGCGACG‑CTCTCGGTGCGTCGCAACATTCATCATGATAATTGCAAAATTATTGCCATCGACAACTCCCCGGCGATGATTGAACGCTGCcg                                                                                                                                                                                                             <  1:620293/289‑1 (MQ=255)
                                                                                cTATTTTCTGCCCCTATCGCCAGACTGGGCGACTGGACCTTTGATGAACGGGTAGCTGAAGTCTTCCCGGATATGATCCAGCG‑TTCCGTACCCGGCTATTCCAATATTATTTCCATGATTGGTATGTTAGCCGAGCGCTTCGTTCAACCTGGTACGCAGGTTTACGATCTGGGTTGTTCTCTGGGCGCGGCGACG‑CTCTCGGTGCGTCGCAACATTCATCATGATAATTGCAAAATTATTGCCATCGACAACTCCCCGGCGATGATTGAACGCTGCCGTCGTCATATTg                                                                                                                                                                                                  >  1:1761245/1‑289 (MQ=255)
                                                                                 tATTTTCTGCCCCTATGGCCAGGTTGGGCGACTGGACCTTTGATGAACGGGTAGCTGAAGTCTTCCCGGATATGATCCAGCG‑TTCCGTACCCGGCTATTCCAATATTATTTCCATGATTGGTATGTTAGCCGAGCGCTTCGTTCAACCTGGTACGCAGGTTTACGATCTGGGTTGTTCTCTGGGCGCGGCGACG‑CTCTCGGTGCGTCGCAACATTCATCATGATAATTGCAAAATTATTGCCATCGACAACTCCCCGGCGATGATTGAACGCTGCCGTCGTCATATTGa                                                                                                                                                                                                 <  2:887745/289‑1 (MQ=255)
                                                                                 tATTTTCTGCCCCTATCGCCAGACTGGGCGACTGGACCTTTGATGAACGGGTAGCTGAAGTCTTCCCGGATATGATCCAGCG‑TTCCGTACCCGGCTATTCCAATATTATTTCCATGATTGGTATGTTAGCCGAGCGCTTCGTTCAACCTGGTACGCAGGTTTACGATCTGGGTTGTTCTCTGGGCGCGGCGACG‑CTCTCGGTGCGTCGCAACATTCATCATGATAATTGCAAAATTATTGCCATCGACAACTCCCCGGCGATGATTGAACGCTGCCGTCGTCATATTGa                                                                                                                                                                                                 <  1:1198039/289‑1 (MQ=255)
                                                                                 atttgtCTGCCCCTGTAGGCGGCCTGGGCGACTGGACCTTTGTTGAACGGGTGGCTGAAGTCTTCCCGGATATGATCCAGCG‑TTCCGTACCCGGCTATTCCAATATTATTTCCATGGTTGGTATGTTAGCCGAGCGCTTCGTTCAACCTGGTACGCAGGTTTACGATCTGGGTTGTTCTCTGTGCGCGGCGACG‑CTCTCGGTGCGTCGCAACATTCATCATGATAATTGCAAAATTATTGCCATCGACAACTCCCCGGCGATGATTGAACGCTGCCGTCGTCATATTGa                                                                                                                                                                                                 <  2:1459090/284‑1 (MQ=255)
                                                                                  aTTTTCTGCCCCTATCGCCAGACTGGGCGACTGGACCTTTGATGAACGGGTAGCTGAAGTCTTCCCGGATATGATCCAGCG‑TTCCGTACCCGGCTATTCCAATATTATTTCCATGATTGGTATGTTAGCCGAGCGCTTCGTTCAACCTGGTACGCAGGTTTACGATCTGGGTTGTTCTCTGGGCGCGGCGACG‑CTCTCGGTGCGTCGCAACATTCATCATGATAATTGCAAAATTATTGCCATCGACAACTCCCCGGCGATGATTGAACGCTGCCGTCGTCATATTGAc                                                                                                                                                                                                <  2:388213/289‑1 (MQ=255)
                                                                                  aTTTTCTGCCCCTATCGCCAGACTGGGCGACTGGACCTTTGATGAACGGGTAGCTGAAGTCTTCCCGGATATGATCCAGCG‑TTCCGTACCCGGCTATTCCAATATTATTTCCATGATTGGTATGTTAGCCGAGCGCTTCGTGCAACCTGGTACGCAGGTTTACGATCTGGGTTGTTCTCTGGGCGCGGCGACG‑CTCTCGGTGCGTCGCAACATTCATCATGATAATTGCAAAATTATTGCCATCGACAACTCCCCGGCGATGATTGAACGCTGCCGTCGTCATATTGAc                                                                                                                                                                                                <  1:1588217/289‑1 (MQ=255)
                                                                                   ttttCTGCCCCTATCGCCAGACTGGGCGACTGGACCTTTGATGAACGGGTAGCTGAAGTCTTCCCGGATATGATCCAGCG‑TTCCGTACCCGGCTATTCCAATATTATTTCCATGATTGGTATGTTAGCCGAGCGCTTCGTTCAACCTGGTACGCAGGTTTACGATCTGGGTTGTTCTCTGGGCGCGGCGACG‑CTCTCGGTGCGTCGCAACATTCATCATGATAATTGCAAAATTATTGCCATCGACAACTCCCCGGCGATGATTGAACGCTGCCGTCGTCATATTGACg                                                                                                                                                                                               <  1:1647246/289‑1 (MQ=255)
                                                                                     ttCTGCCCCTATCGCCAGACTGGGCGACTGGACCTTTGATGAACGGGTAGCTGAAGTCTTCCCGGATATGATCCAGCG‑TTCCGTACCCGGCTATTCCAATATTATTTCCATGATTGGTATGTTAGCCGAGCGCTTCGTTCAACCTGGTACGCAGGTTTACGATCTGGGTTGTTCTCTGGGCGCGGCGACG‑CTCTCGGTGCGTCGCAACATTCATCATGATAATTGCAAAATTATTGCCATCGACAACTCCCCGGCGATGATTGAACGCTGCCGTCGTCATATTGACGcc                                                                                                                                                                                             <  2:911089/289‑1 (MQ=255)
                                                                                        tGCCCCTATCGCCAGACTGGGCGACTGGACCTTTGATGAACGGGTAGCTGAAGTCTTCCCGGATATGATCCAGCG‑TTCCGTACCCGGCTATTCCAATATTATTTCCATGATTGGTATGTTAGCCGAGCGCTTCGTTCAACCTGGTACGCAGGTTTACGATCTGGGTTGTTCTCTGGGCGCGGCGACG‑CTCTCGGTGCGTCGCAACATTCATCATGATAATTGCAAAATTATTGCCATCGACAACTCCCCGGCGATGATTGAACGCTGCCGTCGTCATATTGACGCCtat                                                                                                                                                                                          >  2:961210/1‑289 (MQ=255)
                                                                                         gCCCCTATCGCCAGACTGGGCGACTGGACCTTTGATGAACGGGTAGCTGAAGTCTTCCCGGATATGATCCAGCG‑TTCCGTACCCGGCTATTCCAATATTATTTCCATGATTGGTATGTTAGCCGAGCGCTTCGTTCAACCTGGTACGCAGGTTTACGATCTGGGTTGTTCTCTGGGCGCGGCGACG‑CTCTCGGTGCGTCGCAACATTCATCATGATAATTGCAAAATTATTGCCATCGACAACTCCCCGGCGATGATTGAACGCTGCCGTCGTCATATTGACGCCtata                                                                                                                                                                                         <  1:352824/289‑1 (MQ=255)
                                                                                         gCCCCTATCGCCAGACTGGGCGACTGGACCTTTGATGAACGGGTAGCTGAAGTCTTCCCGGATATGATCCAGCG‑TTCCGTACCCGGCTATTCCAATATTATTTCCATGATTGGTATGTTAGCCGAGCGCTTCGTTCAACCTGGTACGCAGGTTTACGATCTGGGTTGTTCTCTGGGCGCGGCGACG‑CTCTCGGTGCGTCGCAACATTCATCATGATAATTGCAAAATTATTGCCATCGACAACTCCCCGGCGATGATTGAACGCTGCCGTCGTCATATTGACGCCtata                                                                                                                                                                                         >  1:437812/1‑289 (MQ=255)
                                                                                         gCCCCTATCGCCAGACTGGGCGACTGGACCTTTGATGAACGGGTAGCTGAAGTCTTCCCGGATATGATCCAGCG‑TTCCGTACCCGGCTATTCCAATATTATTTCCATGATTGGTATGTTAGCCGAGCGCTTCGTTCAACCTGGTACGCAGGTTTACGATCTGGGTTGTTCTCTGGGCGCGGCGACG‑CTCTCGGTGCGTCGCAACATTCATCATGATAATTGCAAAATTATTGACATCAACAACTCCCCGGCGATGCTATAAAGCTGCACTCTGCACATTGACGCCtaca                                                                                                                                                                                         >  2:1755963/1‑287 (MQ=255)
                                                                                          ccccTATCGCCAGACTGGGCGACTGGACCTTTGATGAACGGGTAGCTGAAGTCTTCCCGGATATGATCCAGCG‑TTCCGTACCCGGCTATTCCAATATTATTTCCATGATTGGTATGTTAGCCGAGCGCTTCGTTCAACCTGGTACGCAGGTTTACGATCTGGGTTGTTCTCTGGGCGCGGCGACG‑CTCTCGGTGCGTCGCAACATTCATCATGa                                                                                                                                                                                                                                                                   >  2:1835541/1‑214 (MQ=255)
                                                                                          ccccTATCGCCAGACTGGGCGACTGGACCTTTGATGAACGGGTAGCTGAAGTCTTCCCGGATATGATCCAGCG‑TTCCGTACCCGGCTATTCCAATATTATTTCCATGATTGGTATGTTAGCCGAGCGCTTCGTTCAACCTGGTACGCAGGTTTACGATCTGGGTTGTTCTCTGGGCGCGGCGACG‑CTCTCGGTGCGTCGCAACATTCATCATGa                                                                                                                                                                                                                                                                   <  1:1835541/214‑1 (MQ=255)
                                                                                           cccTATCGCCAGACTGGGCGACTGTACCTTTGATGACCGGGTCGCTGAAGTCTTCCCGGATATGATCCAGCG‑TTCCGTACCCGGCTATTCCAATATTATTTCCATGATTGGTATGTTAGCCGAGCGCTTCGTTCAACCTGGTACGCAGGTTTACGATCTGGGTTGTTCTCTGGGCGCGGCGACG‑CTCTCGGTGCGTCGCAACATTCATCATGATAATTGCAAAATTATTGCCATCGACAACTCCCCGGCGATGATTGAACGCTGCCGTCGTCATATTGACGCCTATaaa                                                                                                                                                                                       <  2:693981/289‑1 (MQ=255)
                                                                                               aTCGCCAGACTGGGCGACTGGACCTTTGATGAACGGGTAGCTGAAGTCTTCCCGGATATGATCCAGCG‑TTCCGTACCCGGCTATTCCAATATTATTTCCATGATTGGTATGTTAGCCGAGCGCTTCGTTCAACCTGGTACGCAGGTTTACGATCTGGGTTGTTCTCTGGGCGCGGCGACG‑CTCTCGGTGCGTCGCAACATTCATCATGATAATTTCACAATTATTGCCATGGACAACTCCCCGGCGATGTGTTAACGCTGTCGTCGTCATATTGACGCCtatacctct                                                                                                                                                                                    >  1:1351757/1‑283 (MQ=255)
                                                                                               aTCGCCAGACTGGGCGACTGGACCTTTGATGAACGGGTAGCTGAAGTCTTCCCGGATATGATCCAGCG‑TTCCGTACCCGGCTATTCCAATATTATTTCCATGATTGGTATGTTAGCCGAGCGCTTCGTTCAACCTGGTACGCAGGTTTACGATCTGGGTTGTTCTCTGGGCGCGGCGACG‑CTCTCGGTGCGTCGCAACATTCATCATGATAATTGCAAAATTATTGCCATCGACAACTCCCCGGCGATGATTGAACGCTGCCGTCGTCATATTGACGCCTATAAAGccc                                                                                                                                                                                   <  1:88137/289‑1 (MQ=255)
                                                                                               aTCGCCAGACTGGGCGACTGGACCTTTGATGAACGGGTAGCTGAAGTCTTCCCGGATATGATCCAGCG‑TTCCGTACCCGGCTATTCCAATATTATTTCCATGATTGGTATGTTAGCCGAGCGCTTCGTTCAACCTGGTACGCAGGTTTACGATCTGGGTTGTTCTCTGGGCGCGGCGACG‑CTCTCGGTGCGTCGCAACATTCATCATGATAATTGCAAAATTATTGCCATCGACAACTCCCCGGCGATGATTGAACGCTGCCGTCGTCATATTGACGCCTATAAAGcc                                                                                                                                                                                    >  1:515397/1‑288 (MQ=255)
                                                                                               aTCGCCAGACTGGGCGACTGGACCTTTGATGAACGGGTAGCTGAAGTCTTCCCGGATATGATCCAGCG‑TTCCGTACCCGGCTATTCCAATATTATTTCCATGATTGGTATGTTAGCCGAGCGCTTCGTTCAACCTGGTACGCAGGTTTACGATCTGGGTTGTTCTCTGGGCGCGGCGACG‑CTCTCGGTGCGTCCCACCCTTCATCATTATAATTGCCAATTTATTGCCATCGACAACTCCCTGGCGATCATTGAACGCTGCCGTCGTCCTATTGACCTCTTCAAAGcc                                                                                                                                                                                    >  2:1310778/1‑288 (MQ=255)
                                                                                                  gCCAGACTGGGCGACTGGACCTTTGATGAACGGGTAGCTGAAGTCTTCCCGGATATGATCCAGCG‑TTCCGTACCCGGCTATTCCAATATTATTTCCATGATTGGTATGTTAGCCGAGCGCTTCGTTCAACCTGGTACGCAGGTTTACGATCTGGGTTGTTCTCTGGGCGCGGCGACG‑CTCTCGGTGCGTCGCAACATTCATCATGATAATTGCAAAATTATTGCCATCGACAACTCCCCGGCGATGATTGAACGCTGCCGTCGTCATATTGACGCCTATAAAGCCCCTa                                                                                                                                                                                <  1:1037783/289‑1 (MQ=255)
                                                                                                       aCTGGGCGACTGGACCTTTGATGAACGGGTAGCTGAAGTCTTCCCGGATATGATCCAGCG‑TTCCGTACCCGGCTATTCCAATATTATTTCCATGATTGGTATGTTAGCCGAGCGCTTCGTTCAACCTGGTACGCAGGTTTACGATCTGGGGTGTTCTCTGGGCGCGGCGACG‑CTCTTGGTGCGCCGCATCATTCATCATGATAATTGCAAAATTATTGCCATCGACAACTCCCCGGCGATGATTGTACGCTGCCGTCGTCATATTGACGCCTATAAAGCCCCTACGcc                                                                                                                                                                            >  1:1535226/1‑288 (MQ=255)
                                                                                                         tgtgtcacaggcccTGTGTTGGACTGGTAGCTTGAGTTTTCCCGTGTATGTTCCAGCG‑TTCCGTACCCGGCTATTCCAATATTATTTCCATGATTGGTATGTTAGCCGAGCGTTTCGTTCAACCTGGTACGCAGGTTTACGATCTGGGTTGTTCTCTGGGCGCGGCGACG‑CTCGCGGTGCGTCGCAACATTCATCATGATAATTGCAAAATTATTGCCATCGACAACTCCCCGGCGATGATTGAACGCTGCCGTCGTCATATTGACGCCTATAAAGCCCCTACGCCAGt                                                                                                                                                                         <  2:1444129/277‑1 (MQ=255)
                                                                                                           ggCGACTGGACCTTTGATGAACGGGTAGCTGAAGTCTTCCCGGATATGATCCAGCG‑TTCCGTACCCGGCTATTCCAATATTATTTCCATGATTGGTATGTTAGCCGAGCGCTTCGTTCAACCTGGTACGCAGGTTTACGATCTGGGTTGTTCTCTGGGCGCGGCGACG‑CTCTCGGTGCGTCGCAACATTCATCATGATAATTGCAAAATTATTGCCATCGACAACTCCCCGGCGATGATTGAACGCTGCCGTCGTCATATTGACGCCTATAAAGCCCCTACGCCAGTAg                                                                                                                                                                       >  2:1772323/1‑289 (MQ=255)
                                                                                                              gccTGGACCGTTGGTGAACCGGTAGCTGAAGTCTTCCCGGATATGTTCCAGGT‑TTCCGTAACCGGCTATTCCAATATTATTTCCATGATTGGTATGTTAGCCGAGCGCTTCGTTCAACCTGGTACGCAGGTTTACGATCTGGTTTGTTCTCTGGGCGCGGCGACG‑CTCTCGGTGCGTCGCAACATTCATCATGATAATTGCAAAATTATTGCCATCGACAACTCCCCGGCGATGATTGAACGCTGCCGTCGTCATATTGACGCCTATAAAGCCCCTACGCCAGTAGAc                                                                                                                                                                     <  2:1698064/286‑1 (MQ=255)
                                                                                                              gatttggaatttGATGAACTGGTAGGTGAAGGCTTGACAGATTTGATCGAGCG‑TTCCCTGCCCAGCTGTTCCAATTTTAGTTCCATGCTTGGTGTGTTAGACGAGCGCTTCGTTCCACCTGGTACGAAGGTTTACGATCTGGTTTGTTCTCTGGGCGCGGCGACG‑CTCTCGGTGCGTCGCAACCTTCATCATGATAATTGCAAAATTATTGCCATCGACACCTCCCCGGCGATGATTGAACGCTGCCGTCGTCATATTGACGCCTATAAAGCCCCTACGCCAGTAGAc                                                                                                                                                                     <  2:1503781/279‑1 (MQ=255)
                                                                                                              gatgggACCTTTGATGAACGGGTAGTTGAAGTCTTCCCGGATATGATCCAGCG‑TTCCGTACCCGGCTATTCCAATATTATTTCCATGATTGGTATGTTAGCCGTGCGCTTCGTTCAACCTGGTACGCAGGTTTACGATCTGGGTTGTTCTCTGGGCGCGGCGACG‑CTCTCGGTGCGTCGCAACATTCATCATGATAATTGCAAAATTATTGCCATCGACAACTCCCCGGCGATGATTGAACGCTGCCGTCGTCATATTGACGCCTATAAAGCCCCTACGCCAGTAGACg                                                                                                                                                                    <  2:893138/285‑1 (MQ=255)
                                                                                                                     ccTTTGATGAACGGGTAGCTGAAGTCTTCCCGGATATGATCCAGCG‑TTCCGTACCCGGCTATTCCAATATTATTTCCATGATTGGTATGTTAGCCGAGCGCTTCGTTCAACCTCGTACGCAGGTTTACGATCTGGGTTGTTCCCTGGGCGCGGCGACG‑CTCTCGGAGCGTCGCAACATTCATCATGATAATTGCAAAATTATGGCCCTCGACCACTCCCCGCCCATGAGTTAACGCTGCCGTCGCAATATGTACACCTATCAAGCCCCTACCCCTGTAgccctccttta                                                                                                                                                             >  2:1322925/1‑279 (MQ=255)
                                                                                                                      cTTTGATGAACGGGTAGCTGAAGGCCTCCCGGATATGCTCCAGCG‑TTCCGTACCCGGCTATACCAATATTATTTCCATGATTGGTATGTTAGCCGAGCGCTTCGTTCAACCTGGTACGCAGGTTTACGATCTGGGTTGTTCTCTGTGCTCGGCGACG‑CTCTCGGTGCGTCGCAACATTCATCATGATAATTGCAAAATTATTGCCATCGACAACTCCCCGGCGATGATTGAACGCTGCCGTCGTCATATTGACGCCTATAAAGCCCCTACGCCAGTAGACGTCAtt                                                                                                                                                               <  1:1070024/286‑1 (MQ=255)
                                                                                                                            tgaACGGGTAGCTGAAGTCTTCCCGGATATGATCCAGCG‑TTCCGTACCCGGCTATTCCAATATTATTTCCATGATTGGTATGTTAGCCGAGCGCTTCGTTCAACCTGGTACGCAGGTTTACGATCTGGGTTGTTCTCTGGGCGCGGCGACG‑CTCTCGGTGCGTCGCAACATTCATCATGATAATTGCAAAATTATTGCCATCGACAACTCCCCGGCGATGATTGAACGCTGCCGTCGTCATATTGACGCCTATAAAGCCCCTACGCCAGTAGACGTCATTGAAGGTGat                                                                                                                                                      <  1:1777504/289‑1 (MQ=255)
                                                                                                                             gaACGGGTAGCTGAAGTCTTCCCGGATATGATCCAGCG‑TTCCGTACCCGGCTATTCCAATATTATTTCCATGATTGGTATGTTAGCCGAGCGCTTCGTTCAACCTGGTACGCAGGTTTACGATCTGGGTTGTTCTCTGGGCGCGGCGACG‑CTCTCGGTGCGTCGCAACATTCATCATGATAATTGCAAAATTATTGCCATCGACAACTCCCCGGCGATGATTGAACGCTGCCGTCGTCATATTGACGCCTATAAATCCCATACGCCAGTAACCGTCATTGAAGGTGata                                                                                                                                                     >  2:1044794/1‑289 (MQ=255)
                                                                                                                                cggttgtcttaaGTCTCCCCGGAGATGTTCCGGCT‑TTCCGTACCCGGCTATTCAAATATTATTTCCATGATTGGTATGTTAGCCGAGCGCTTCGTTCAACCTGGTACGCAGGTTTACGATCTGGGTTGTTCTCTGGGCGCGGCGACG‑CTCTCGGTGCGTCGCAACATTCATCATGATAATTGCAAAATTATTGCCATCGACAACTCCCCGGCGATGATTGAACGCTGCCGTCGTCATATTGACGCCTATAAAGCCCCTACGCCAGTAGACGTCATTGAAGGTGATAtt                                                                                                                                                   <  2:399618/278‑1 (MQ=255)
                                                                                                                                         gAAGTCTTCCCGGTAATGGT‑CAGTGCTTCCGTACCCGGTTATTCCAATATTATTTCCATGATTGGTATGTTAGCCGGGCGCTTCGTTCAACCTGGTACGCAGGTTTACGATCGGGGTTGTTCTCTGGGCGCGGCGACG‑CTCTCGGTGCGTCGCAACATTCATCATGATAATTGCAAAATTATTGCCATCGACAACTCCCCGGCGATGATTGAACGCTGCCGTCGTCATATTGACGCCTATAAAGCCCCTACGCCAGTAGACGTCATTGAAGGTGATATTCGCGATATCg                                                                                                                                         <  2:1761245/289‑1 (MQ=255)
                                                                                                                                           aGTCTTCCCGGATATGATCCAGCG‑TTCCGTACCCGGCTATTCCAATATTATTTCCATGATTGGTATGTTAGCCGAGCGCTTCGTTCAACCTGGTACGCAGGTTTACGATCTGGGTTGTTCTCTGGGCGCGGCGACG‑CTCTCGGTGCGTCGCAACATTCATCATGATAATTGCa                                                                                                                                                                                                                                                           >  1:81907/1‑173 (MQ=255)
                                                                                                                                               ttCCCGGATATGATCCAGCG‑TTCCGTACCCGGCTATTCCAATATTATTTCCATGATTGGTATGTTAGCCGAGCGCTTCGTTCAACCTGGTACGCAGGTTTACGATCTGGGTTGTTCTCTGGGCGCGGCGACG‑CTCTCGGTGCGTCGCAACATTCATCATGATAATTGCAAAATTATTGCCATCGACAACTCCCCGGCGATGATTGAACGCTGCCGTCGTCATATTGACGCCTATAAAGCCCCTACGCCAGTAGACGTCATTGAAGGTGATATTCGCGATATCGCCATTg                                                                                                                                   >  2:1180626/1‑289 (MQ=255)
                                                                                                                                                           aTCCAGCG‑TTCCGTACCCGGCTATTCCAATATTATTTCCATGATTGGTATGTTAGCCGAGCGCTTCGTTCAACCTGGTACGCAGGTTTACGATCTGGGTTGTTCTCTGGGCGCGGCGACG‑CTCTCGGTGCGTCGCAACATTCATCATGATAATTGCAAAATTATTGCCATCGACAACTCCCCGGCGATGATTGAACGCTGCCGTCGTCATATTGACGCCTATAAAGCCCCTACGCCAGTAGACGTCATTGAAGGTGATATTCGCGATATCGCCATTGAAAACGCatcga                                                                                                                       >  1:1190670/1‑285 (MQ=255)
                                                                                                                                                              cAGCG‑TTCCGTACCCGGCTATTCCAATATTATTTCCATGATTGGTATGTTAGCCGAGCGCTTCGTTCAACCTGGTACGCAGGTTTACGATCTGGGTTGTTCTCTGGGCGCGGCGACG‑CTCTCGGTGCGTCGCAACATTCATCATGATAATTGCAAAATTATTGCCATCGACAACTCCCCGGCGATGATTGAACGCTGCCGTCGTCATATTGACGCCTATAAAGCCCCTACGCCAGTAGACGTCATTGAAGGTGATATTCGCGATATCGCCATTGAAAACGCatcgatgg                                                                                                                    <  1:978655/289‑8 (MQ=255)
                                                                                                                                                               aGCG‑TTCCGTACCCGGCTATTCCAATATTATTTCCATGATTGGTATGTTAGCCGAGCGCTTCGTTCAACCTGGTACGCAGGTTTACGATCTGGGTTGTTCTCTGGGCGCGGCGACG‑CTCTCGGTGCGTCGCAACATTCATCATGATAATTGCAAAATTAGTGCCATCGACAACTCCCCGGCGATGATTGAACGCTGCCGTCGTCATATTGACGCCTATAAAGCCCCTAAGCCAGTAAAGGGCCTTGAAGCTGAAATTCGCCATATCGCCATTGAAAACGCatcgatggt                                                                                                                   >  2:867765/1‑281 (MQ=255)
                                                                                                                                                                    ttCCGTACCCGGCTGTTCCAATTTTTTTTCCATGGTTGGTAGGGTAGCCGAGCGTGTCGTTCCACCTGGTACGGAGGTTTACGATCTGGGTTGTTCTCTGGGGGCGGCGACG‑CTCTCGGTGCGTCGCAACATTCATCATGATAATTGCAAAATTATTGCCATCGACAACTCCCCGGCGATGATTGAACGCTGCCGTCGTCATATTGACGCCTATAAAGCCCCTACGCCAGTAGACGTCATTGAAGGTGATATTCGCGATATCGCCATTGAAAACGCATCGATGgtggtg                                                                                                               <  2:1047590/289‑1 (MQ=255)
                                                                                                                                                                    tgccGTACCCGGCTATGCTAGTATTATTGCCATGATTGTTATTTTAGCCCGGCGCTTCGTTCAACCTGGTACGCAGGTTTACGATCTGGGTTGTTCTCTGGGCGCGGCGACG‑CTCTCGGTGCGTCGCAACATTCATCATGATAATTGCAAAATTATTGCCATCGACATCTCCCCGGCGATGATTGAACGCTGCCGTCGTCATATTGACGCCTATAAAGCCCCTACGCCAGTAGACGTCATTGAAGGTGATATTCGCGATATCGCCATTGAAAACGCATCGATGgtggtg                                                                                                               <  2:1196075/287‑1 (MQ=255)
                                                                                                                                                                      ccGTACCCGGCTATTCCAATCTTATTTCCATGATTGGTATGTTAGCCGAGCGCTTCGTTCACCCTGGTACGCAGGTTTACGATCTGGGTTGTTCTCTGGGCGCGGCGACG‑CTCTCGGTGCGTCGCAACATTCATCATGATAATTGCAAAATTATTGCCATCGACAACTCCCCGGCGATGATTGAACGCTGCCGTCGTCATATTGACGCCTATAAAGCCCCTACGCCAGTAGACGTCATTGAAGGTGATATTCGCGATATCGCCATTGAAAACGCATCGATGGTGGTGCt                                                                                                             <  1:598465/289‑1 (MQ=255)
                                                                                                                                                                      ccGTACCCGGCTATTCCAATATTATTTCCATGATTGGTATGTTAGCCGAGCGCTTCGTTCAACCTGGTACGCAGGTTTACGATCTGGGTTGTTCTCTGGGCGCGGCGACG‑CTCTCGGTGCGTCGCAACATTCATCATGATAATTGCAAAATTATTGCCATCGACAACTCCCCGGCGATGATTGAACGCTGCCGTCGTCATATTGACGCCTATAAAGCCCCTACGCCAGTAGACGTCATTGACGGTGATATTCGCGATATCGCCATTGAAAACGCACCGATGGTGGTGcg                                                                                                             >  2:894842/1‑288 (MQ=255)
                                                                                                                                                                      ccGTACCCGGCTATTCCAATATTATTTCCATGATTGGTATGTTAGCCGAGCGCTTCGTTCAACCTGGTACGCAGGTTTACGATCTGGGTTGTTCTCTGGGCGCGGCGACG‑CTCTCGGTGCGTCGCAACATTCATCATGATAATTGCAAAATTATTGCCATCGACAACTCCCCGGCGATGATTGAACGCTGCCGTCGTCATATTGACGCCTATAAAGCCCCTACGCCAGTAGACGTCATTGAAGGTGATATTCGCGATATCg                                                                                                                                         <  2:640349/261‑1 (MQ=255)
                                                                                                                                                                      ccGTACCCGGCTATTCCAATATTATTTCCATGATTGGTATGTTAGCCGAGCGCTTCGTTCAACCTGGTACGCAGGTTTACGATCTGGGTTGTTCTCTGGGCGCGGCGACG‑CTCTCGGTGCGTCGCAACATTCATCATGATAATTGCAAAATTATTGCCATCGACAACTCCCCGGCGATGATTGAACGCTGCCGTCGTCATATTGACGCCTATAAAGCCCCTACGCCAGTAGACGTCATTGAAGGTGATATTCGCGATATCg                                                                                                                                         >  1:640349/1‑261 (MQ=255)
                                                                                                                                                                           cccGGCTATTCCATTATTGTTTCCAGGTTTGGTTGGTTAGCCGAGCGCTTAGTTCAACCTGGTACGGAGGTTTACGTTCTGGTTTGTTCTCTGGGCGCGGCGACG‑CTCTCGGTGCGTCGCAACATTCATCATGATAATTGCAAAATTATTGCCATCGACAACTCCCCGGCGATGATTGAACGCTGCCGTCGTCATATTGACGCCTATAAAGCCCCTACGCCAGTAGACGTCATTGAAGGTGATATTCGCGATATCGCCATTGAAAACGCATCGATGGTGGTGCTGAAtt                                                                                                        <  2:508710/289‑1 (MQ=255)
                                                                                                                                                                                cTATTCCAATATTATTTCCATGATTGGTATGTTAGCCGAGCGCTTCGTTCAACCTGGTACGCAGGTTTACGATCTGGGTTGTTCTCTGGGCGCGGCGACG‑CTCTCGGTGCGTCGCAACATTCATCATGATAATTGCAAAATTATTGCCATCGACAACTCCCCGGCGATGATTGAACGCTGCCGTCGTCATCTTGACGCCTATAAAGCCCCTACGCCAGTAGACGTCATTGAAGTGGATATTCGCGCTATCGCCATTGAAAACGCATCCATGGGTGCTCTGAACTTTAc                                                                                                    >  2:765996/1‑288 (MQ=255)
                                                                                                                                                                                     ccAATATTATTTCCATGATTGGTATGTTAGCCGAGCGCTTCGTTCAACCTGGTACGCAGGTTTACGATCTGGGTTGTTCTCTGGGCGCGGCGACG‑CTCTCGGTGCGTCGCAACATTCATCATGATAATTGCAAAATTATTGCCATCGACAACTCCCCGGCGATGATTGAACGCTGCCGTCGTCATATTGACGCCTATAAAGCCCCTACGCCAGTAGACGTCATTGAAGGTGATATTCGCGATATCGCCATTGAAAACGCATCGATGGTGGTGCTGAATTTTACCCTGCa                                                                                              <  1:131256/289‑1 (MQ=255)
                                                                                                                                                                                     ccAATATTATTTCCATGATTGGTATGTTAGCCGAGCGCTTCGTTCAACCTGGTACGCAGGTTTACGATCTGGGTTGTTCTCTGGGCGCGGCGACG‑CTCTCGGTGCGTCGCAACATTCATCATGATAATTGCAAAATTATTGCCATCGACAACTCCCCGGCGATGATTGAACGCTGCCGTCGTCATATTGACGCCTATAAAGCCCCTACGCCAGTAGACGTCATTGAAGGTGATATTCGCGATATCGCCATTGAAAACGCATCGATGGTGGTGCTGAATTTTACCCTGCa                                                                                              <  1:111232/289‑1 (MQ=255)
                                                                                                                                                                                     ccAATAGTATTTCCATGATTGGTATGTTAGCCGGGCGCTTCGTTCTACCTGGTACGCAGGTTTACGATCTGCGTTGTTCTCTGGGCGCGGCGACG‑CTCTCGGTGCGTCGCAACATTCATCATGATAATTGCAAAATTATTGCCATCGACAACTCCCCGGCGATGATTGAACGCTGCCGTCGTCATATTGACGCCTATAAAGCCCCTACGCCAGTAGACGTCATTGAAGGTGATATTCGCGATATCGCCATTGAAAACGCATCGATGGTGGTGCTGAATTTTACCCTGCa                                                                                              <  2:156956/289‑1 (MQ=255)
                                                                                                                                                                                         tattatTTCCATGATTGGTATGTTAGCCGAGCGCTTCGTTCAACCTGGTACGCAGGTTTACGATCTGGGTTGTTCTCTGGGCGCGGCGACG‑CTCTCGGTGCGTCGCCACATTCATCATGATAATTGCAACATTATTGCCATCGACAACTCCCCGGCGATGATTGAACGCTGCCGTCGTCATATTGACGCCTATAAAGCCCCTACGCCAGTAGACGTCATGTAAGGTGATATTCGCGATATCCCCCTTGAAAACACACCGATGGTGTCGGTGAATTTTACTCTGCAAtc                                                                                           >  2:1119555/1‑287 (MQ=255)
                                                                                                                                                                                             attTCCATGATTGGTATGTTAGCCGAGCGCTTCGTTCAACCTGGTACGCAGGTTTACGATCTGGGTTGTTCTCTGGGCGCGGCGACG‑CTCTCGGTGCGTCGCAACATTCATCTTGATAATTGCACAATTATTGCCATCGACAACTCCCCGGCGATGATTGAACGCTGCCGCCGTCATCTTGACGCCTATAACGCCCCTACCCCACTAGACGCCATTGAACGTGATATTCGCGACATCGCCATTGTAAACGCATCGATGGTGGTGCTGAATCTTACCCTCCAAT‑TCCTgg                                                                                     >  2:1591644/1‑289 (MQ=255)
                                                                                                                                                                                             attTCCATGATTGGTATGTTAGCCGAGCGCTTCGTTCAACCTGGTACGCAGGTTTACGATCTGGGTTGTTCTCTGGGCGCGGCGACG‑CTCTCGGTGCGTCGCAACATTCATCATGATAATTGCAAAATTATTGCCATCGACAACTCCCCGGCGATGATTGAACGCTGCCGTCGTCATATTGACGCCTATAAAGCCCCTACGCCAGTAGACGTCATTGAAGGTGATATTCGCGATATCGCCATTGAAAACGCATCGATGGTGGTGCTGAATTTTACCCTGCAAT‑TCCTgg                                                                                     >  2:440013/1‑289 (MQ=255)
                                                                                                                                                                                             attTCCATGATTGGTATGTTAGCCGAGCGCTTCGTTCAACCTGGTACGCAGGTTTACGATCTGGGTTGTTCTCTGGGCGCGGCGACG‑CTCTCGGTGCGTCGCAACATTCATCATGATAATTGCAAAATTATTGCCATCGACAACTCCCCGGCGATGATTGAACGCTGCCGTCGTCATATTGACGCCTATAAAGCCCCTACGCCAGTAGACGTCATTGAAGGTGATATTCGCGATATCGCCATTGAAAACGCATCGATGGTGGTGCTGAATTTTACCCTGCAAT‑TCCTgg                                                                                     >  1:212417/1‑289 (MQ=255)
                                                                                                                                                                                              tttCCATGATTGGTATGTTAGCCGAGCGCTTCGTTCAACCTGGTACGCAGGTTTACGATCTGGGTTGTTCTCTGGGCGCGGCGACG‑CTCTCGGTGCGTCGCAACATTCATCATGATAATTGCAAAATTATTGCCATCGACAACTCCCCGGCGATGATTGAACGCTGCCGTCGTCATATTGACGCCTATAAAGCCCCTACGCCAGTAGACGTCATTGAAGGTGATATTCGCGATATCGCCTTTGAAAACGCATCGATGGTGGTGCTGCATTTTAACCTGCAAT‑TCCTGGa                                                                                    >  2:1218691/1‑289 (MQ=255)
                                                                                                                                                                                                    tGATTGGTATGTTAGCCGAGCGCTTCGTTCAACCTGGTACGCAGGTTTACGATCTGGGTTGTTCTCTGGGCGCGGCGACG‑CTCTCGGTGCGTCGCAACATTCATCATGATAATTGCAAAATTATTGCCATCGACAACTCCCCGGCGATGATTGAACGCTGCCGTCGTCATATTGACGCCTATAAAGCCCCTACGCCAGTAGACGTCATTGAAGGTGATATTCGCGATATCGCCATTGAAAACGCATCGATGGTGGTGCTGAATTTTACCCTGCAAT‑TCCTGGAACCtt                                                                               >  2:785927/1‑288 (MQ=255)
                                                                                                                                                                                                        tGGTATGTTAGCCGAGCGCTTCGTTCAACCTGGTACGCAGGTTTACGATCTGGGTTGTTCTCTGGGCGCGGCGACG‑CCCTCGGTGCGTCGCAACATTCATCATGATAATTGCAAAATTATTGCCATCGACAACTCCCCGGCGATGATTGAACGCTGCCGTCGTCATATTGACGCCTATAAAGCCCCTACGCCAGTAGACGTCATTGAAGGTGATATTCGCGATATCGCCATTGAAAACGCATCGATGGTGGTGCTGAATTTTACCCTGCAAT‑TCCTGGAACCTTCCgc                                                                           >  2:1141304/1‑287 (MQ=255)
                                                                                                                                                                                                                     gAGCGCTTCGTTCAACCTGGTACGCAGGTTTACGATCTGGGTTGTTCTCTGGGCGCGGCGACG‑CTCTCGGTGCGTCGCAACATTCATCATGATAATTGCAAAATTATTGCCATCGACAACTCCCCGGCGATGATTGAACGCTGCCGTCGTCATATTGACGCCTATAAAGCCCCTACGCCAGTAGACGTCATTGAAGGTGATATTCGCGATATCGCCATTGAAAACGCATCGATGGTGGTGCTGAATTTTACCCTGCAAT‑TCCTGGAACCTTCCGAGCGCCAGGCGtt                                                               >  1:552281/1‑287 (MQ=255)
                                                                                                                                                                                                                     gAGCGCTTCGTTCAACCTGGTACGCAGGTTTACGATCTGGGTTGTTCTCTGGGCGCGGCGACG‑CTCTCGGTGCGTCGCAACATTCAACATGATAATTGCAAAATTATTGCCATCGACAACTCCCCGGCGATGATTGAACGCTGCCGTCGTCATATTGACGCCTATAAAGCCCCTACGCCAGTAGACGTCATTGAATGTGATATTCGCGATATCGCCATTGAAAACTCCACCAAGGGGGTGCTGAATTTTACCCCGTAAT‑TCCTGGTACTTTACGACCGCGCGGCTTTa                                                              >  2:1904027/1‑288 (MQ=255)
                                                                                                                                                                                                                                    ccTGGTACGCAGGTTTACGATCTGGGTTGTTCTCTGGGCGCGGCGACG‑CTCTCGGTGCGTCGCAACATTCATCATGATAATTGCAAAATTATTGCCATCGACAACTCCCCGGCGATGATTGAACGCTGCCGTCGTCATATTGACGCCTATAAAGCCCCTACGCCAGTAGACGTCATTGAAGGTGATATTCGCGATATCGCCATTGAAAACGCATCGATGGTGGTGCTGAATTTTACCCTGCAAT‑TCCTGGAACCTTCCGAGCGCCAGGCGTTA‑CTGGATAAAATTTATc                                             <  1:151123/289‑1 (MQ=255)
                                                                                                                                                                                                                                    ccTGGGACGCTGGTTTACGTGGTGGGGTTGTCTCTGGGGGCGGCGACG‑CTCTCGGTGCGTCGCAACATTCATCATGATAATTGCAAAATTATTGCCATCGCAAACTCCCCGGCGATGATTGAACGCTGCCGTCGTCATATTGACGCCTATAAAGCCCCTACGCCAGTAGACGTCATTGAAGGTGATATTCGCGATATCGCCATTGAAAACGCATCGATGGTGGTGCTGAATTTTACCCTGCAAT‑TCCTGGAACCTTCCGAGCGCCAGGCGTTA‑CTGGATAAAATTTATc                                             <  2:1351757/289‑1 (MQ=255)
                                                                                                                                                                                                                                       ggTACGCAGGTTTACGATCTGGGTTGTTCTCTGGGCGCGGCGACG‑CTCTCGGTGCGTCGCAACATTCATCATGATAATTGCAAAATTATTg                                                                                                                                                                                                                                                  >  1:73603/1‑91 (MQ=255)
                                                                                                                                                                                                                                       ggTACGCAGGTTTACGATCTGGGTTGTTCTCTGGGCGCGGCGACG‑CTCTCGGTGCGTCGCAACATTCATCATGATAATTGCAAAATTATTg                                                                                                                                                                                                                                                  <  2:73603/91‑1 (MQ=255)
                                                                                                                                                                                                                                       ggTACGCAGGTTTACGATCTGGGTTGTTCTCTGGGCGCGGCGACG‑CTCTCGGTGCGTCGCAACATTCATCATGATAATTGCAAAATTATTGCCATCGACAACTCCCCGGCGATGATTGAACGCTGCCGTCGTCATATTGACGCCTATAAAGCCCCTACGCCAGTAGACGTCATTGAAGGTGATATTCGCGATATCGCCATTGAAAACGCATCGATGGTGGTGCTGAATTTTACCCTGCAAT‑TCCTGGAACCTTCCGAGCGCCAGGCGTTA‑CTGGATAAAATTTATCAAg                                          >  2:1908116/1‑289 (MQ=255)
                                                                                                                                                                                                                                       ggTACGCAGGTTTACGATCTGGGTTGTTCTCTGGGCGCGGCGACG‑CTCTCGGTGCGTCGCAACATTCATCATGATAATTGCAAAATTATTGCCATCGACAACTCCCCGGCGATGATTGAACGCTGCCGTCGTCATATTGACGCCTATAAAGCCCCTACGCCAGTAGACGTCATTGAAGGTGATATTCGCGATATCGCCATTGAAAACGCATCGATGGTGGTGCTGAATTTTACCCTGCAAT‑TCCTGGAACCTTCCGAGCGCCAGGCGTTA‑CTGGATAAAATTTATCAAg                                          >  1:1567686/1‑289 (MQ=255)
                                                                                                                                                                                                                                         tACGCAGGTTTACGATCTGGGTTGTTCTCTGGGCGCGGCGACG‑CTCTCGGTGCGTCGCAACATTCATCATGATAATTGCAAAATTATTGCCATCGACAACTCCCCGGCGATGATTGAACGCTGCCGTCGTCATATTGACGCCTCGAAAGCCCCTACGCCAGTAGACGTCATTGAAGGTGATCTTCGCGATATCGCCATTTAAAACGAATCGATGGTTGAGCAGAAGTTTACTCTGCAAT‑TCCTGGAATCTTCCGCGCGCGTGGCCTTA‑CTGGACaaccgtaatccatgg                                        >  2:1492379/1‑276 (MQ=255)
                                                                                                                                                                                                                                         tACGCAGGTTTACGATCTGGGTTGTTCTCTGGGCGCGGCGACG‑CTCTCGGTGCGTCGCAACATTCATCATGATAATTGCAAAATTATTGCCATCGACAACTCCCCGGCGATGATTGAACGCTGCCGTCGTCATATTGACGCCTATAAAGCCCCTACGCCAGTAGACGTCATTGAAGGTGATATTCGCGATATCGCCATTGAAAACGCATCGATGGTGGTGCTGAATTTTACCCTGCAAT‑TCCTGGAACCTTCCGAgcg                                                                        <  2:484099/258‑1 (MQ=255)
                                                                                                                                                                                                                                              aGGTTTACGATCTGGGTTGTTCTCTGGGCGCGGCGACG‑CTCTCGGTGCGTCGCAACATTCATCATGATAATTGCAAAATTATTGCCATCGACAACTCCCCGGCGATGATTGAACGCTGCCGTCGTCATATTGACGCCTATACAGCCCCTACGCCAGTAGTCGTCATTGAAGGTGATATTCGCGATATCGCCATTGAAAACGCATCGATGGTGGTGCTGAACTTTACCCTGCAAT‑TCATGGACCTCTCCGAGCGCCAGGCGTTA‑CTGGATACAATTTTCCAAGGGCTGa                                    >  2:1801234/1‑288 (MQ=255)
                                                                                                                                                                                                                                                 tttACGATCTGGGTTGTTCTCTGGGCGCGGCGACG‑CTCTCGGTGCGTCGCAACATTCATCATGATAATTGCAAAATTATTGCCATCGACAACTCCCCGGCGATGATTGAACGCTGCCGTCGTCATATTGACGCCTATAAAGCCCCTACGCCAGTAGACGTCATTGAAGGTGATATTCGCGATATCGCCATTGAAAACGCATCGATGGTGGTGCTGAATTTTACCCTGCAAT‑TCCTGGAACCTTCCGAGCGCCAGGCGTTA‑CTGGATAAAATTTATCAAGGGCTGAAccc                                <  2:482776/289‑1 (MQ=255)
                                                                                                                                                                                                                                                  ttACGATCTGGGTTGTTCTCTGGGCGCGGCGACG‑CTCTCGGTGCGTCGCAACATTCATCATGATAATTGCAAAATTATTGCCATCGACAACTCCCCGGCGATGATTGAACGCTGCCGTCGTCATATTGACGCCTATAAAGCCCCTACGCCAGTAGACGTCATTGAAGGTGATATTCGCGATATCGCCATTGAAAACGCATCGATGGTGGTGCTGAATTTTACCCTGCAAT‑TCCTGGAACCTTCCGAGCGCCAGGCGTTA‑CTGGATAAAATTTATCAAGGGCTGAAcccc                               >  1:1819874/1‑289 (MQ=255)
                                                                                                                                                                                                                                                   tACGATCTGGGTTGTTCTCTGGGCGCGGCGACG‑CTCTCGGTGCGTCGCAACATTCATCATGATAATTGCAAAATTATTGCCATCGACAACTCCCCGGCGATGATTGAACGCTGCCGTCGTCATATTGACGCCTATAAAGCCCCTACGCCAGTAGACGTCATTGAAGGTGATATTCGCGATATCGCCATTGAAAACGCATCGATGGTGGTGCTGAATTTTACCCTGCAAT‑TCCTGGAACCTTCCGAgcg                                                                        >  2:1884616/1‑248 (MQ=255)
                                                                                                                                                                                                                                                      gctCTGGGTTGTTCTCTGAGGGAGGCGACG‑CTTTCGGTGCGTCGCAACAATCATCATGATAATTTCAAAATTATTGCCATCGACAATTCCCCGGCGATGATTGAACGCTGCCGTCGTCATATTGACGCCTATAAAGCCCCTACGCCAGTAGACGTCATTGAAGGTGATATTCGCGATATCGCCATTGAAAACGCCTCGATGGTGGTGCTGAATTTTACCCTGCAAT‑TCCTGGAACCTTCCGAGGGCCAGGCGTTA‑CTGGATAATATTTATCAAGGGCTGAACCCcggcg                           <  1:793664/287‑1 (MQ=255)
                                                                                                                                                                                                                                                          tGGGTTGTTCTCTGGGCGCGGCGACG‑CTCTCGGTGCGTCGCAACATTCATCATGATAATTGCAAAATTATTGCCATCGACAACTCCCCGGCGATGATTGAACGCTGCCGTCGTCATATTGACGCCTATAAAGCCCCTACGCCAGTAGACGTCATTGAAGGTGATATTCGCGATATCGCCATTGAAAACGCATCGATGGTGGTGCTGAATTTTACCCTGaaa                                                                                             >  2:298104/1‑221 (MQ=255)
                                                                                                                                                                                                                                                          tGGGTTGTTCTCTGGGCGCGGCGACG‑CTCTCGGTGCGTCGCAACATTCATCATGATAATTGCAAAATTATTGCCATCGACAACTCCCCGGCGATGATTGAACGCTGCCGTCGTCATATTGACGCCTATAAAGCCCCTACGCCAGTAGACGTCATTGAAGGTGATATTCGCGATATCGCCATTGAAAACGCATCGATGGTGGTGCTGAATTTTACCCTGCAAT‑TCCTGGAACCTTCCGAGCGCCAGGCGTTA‑CTGGATAAAATTTATc                                             <  1:1714798/267‑1 (MQ=255)
                                                                                                                                                                                                                                                          tGGGTTGTTCTCTGGGCGCGGCGACG‑CTCTCGGTGCGTCGCAACATTCATCATGATAATTGCAAAATTATTGCCATCGACAACTCCCCGGCGATGATTGAACGCTGCCGTCGTCATATTGACGCCTATAAAGCCCCTACGCCAGTAGACGTCATTGAAGGTGATATTCGCGATATCGCCATTGAAAACGCATCGATGGTGGTGCTGAATTTTACCCTGCAAT‑TCCTGGAACCTTCCGAGCGCCAGGCGTTA‑CTGGATAAAATTTATCAAGGGCTGAACCCCGgcggcg                        >  2:161969/1‑288 (MQ=255)
                                                                                                                                                                                                                                                          tGGGTTGTTCTCTGGGCGCGGCGACG‑CTCTCGGTGCGTCGCAACATTCATCATGATAATTGCAAAATTATTGCCATCGACAACTCCCCGGCGATCAGTGAACGCTGCCGTCCTCATATTGACGCCTATAAAGCCCCTACGCCAGTAGACGTCATTGAAGGTGATTTCAGCCATATCGCCACTGAAAACGCATCGATGGTGGTCCTGAATTTTACCCTGCAATCTCCT‑GAACCTTCCTAGCGCC‑CGCGCCATCTGTTTAAAATTTCACAAGTTCTGAAcccctccgcac                        >  2:1314537/1‑281 (MQ=255)
                                                                                                                                                                                                                                                            ggTTGTTCTCTGGGCGCGGCGACG‑CTCTCGGTGCGTCGCAACATTCATCATGATAATTGCAAAATTATTGcc                                                                                                                                                                                                                                                >  1:463403/1‑72 (MQ=255)
                                                                                                                                                                                                                                                                gttCTCTGGGCGCGGCGACG‑CTCTCGGTGCGTCGCAACTTTCATCATGATAATTGCAAAATTATTGCCATCGACGACTCCCCGGCGATGATTGAACGCTGCCGTCGTCATATTGACGCCTATAAAGCCCCTACGCCAGTAGACGTCATTGAAGGTGATATTCGCGATATCGCCATTGAAAACGCATCGATGGTGGTGCTGAATTTTACCCTGCAAT‑TCCTGGAACCTTCCGAGCGCCAGGCGTTA‑CTGGATAAAATTTATCAAGGGCTGAACCCCGGCGGCGCGCTGGt                 <  2:1338591/289‑1 (MQ=255)
                                                                                                                                                                                                                                                                 ttCTCTGGGCGCGGCGACG‑CTCTCGGTGCGTCGCAACATTCATCATGATAATTGCAAAATTATTGCCATCGACAACTCCCCGGCGATGATTGAACGCTGCCGTCGTCATATTGACGCCTATAAAGCCCCTACGCCAGTAGACGTCATTGAAGGTGATATTCGCGATATCg                                                                                                                                         <  1:405048/170‑1 (MQ=255)
                                                                                                                                                                                                                                                                           gcggcgACG‑CTCTCGGTGCGTCGCAACATTCATCATGATAATTGCAAAATTATTGCCATCGACAACTCCCCGGCGATGATTGAACGCTGCCGTCGTCATATTGACGCCTATAAAGCCCCTACGCCAGTAGACGTCATTGAAGGTGATATTCGCGATATCGCCATTGAAAACGCATCTATGGTGGTCCTGAATTTTACCCTGCCAT‑TCCTGGAACCTTCCGAGCCCCAGGCGTTA‑CTGGATAAAATTTATCAAGTGCTGAACCCCGGCGGCGCGCTGGTGCtttcggaaa      >  2:1125590/1‑282 (MQ=255)
                                                                                                                                                                                                                                                                             ggcgACG‑CTCTCGGTGCGTCGCAACATTCATCATGATAATTGCAAAATTATTGCCATCGACAACTCCCCGGCGATGATTGAACGCTGCCGTCGTCATATTGACGCCTATAAAGCCCCTACGCCAGTAGACGTCATTGAAGGTGATATTCGCGATATCGCCATTGAAAACGCATCGATGGTGGTGCTGAATTTTACCCTGCAAT‑TCCTGGAACCTTCCGAGCGCCAGGCGTTA‑CTGGATAAAATTTATCAAGGGCTGAACCCCGGCGGCGCGCTGGTGCtttcggacaaa    >  1:862465/1‑280 (MQ=255)
                                                                                                                                                                                                                                                                                gACG‑CTCTCGGTGCGTCGCAACATTCATCATGATAATTGCAAAATTATTGCCATCGACAACTCCCCGGCGATGATTGAACGCTGCCGTCGTCATATTGACGCCTATAAAGCCCCTACGCCAGTAGACGTCATTGAAGGTGATATTCGCGATATCGCCATTGAAAACGCATCGATGGTGGTGCTGAATTTTACCCTGCAAT‑TCCTGGAACCTTCCGAGCGCCAGGCGTTA‑CTGGATAAAATTTATCAAGGGCTGAACCCCGGCGGCGCGCTGGTGCTTTCGGAAAAAtt  <  1:759646/288‑1 (MQ=255)
                                                                                                                                                                                                                                                                                        |||                                                                                                                                                                                                                                                                                        
GTTGGTTTTCTCCCTGCGTTAACGCACAATACGCCACTTTCTTTTTCCCGGATTTTTACGTTATGTCTCACCGCGACACGCTATTTTCTGCCCCTATCGCCAGACTGGGCGACTGGACCTTTGATGAACGGGTAGCTGAAGTCTTCCCGGATATGATCCAGCG‑TTCCGTACCCGGCTATTCCAATATTATTTCCATGATTGGTATGTTAGCCGAGCGCTTCGTTCAACCTGGTACGCAGGTTTACGATCTGGGTTGTTCTCTGGGCGCGGCGACG‑CTCAGCGTGCGTCGCAACATTCATCATGATAATTGCAAAATTATTGCCATCGACAACTCCCCGGCGATGATTGAACGCTGCCGTCGTCATATTGACGCCTATAAAGCCCCTACGCCAGTAGACGTCATTGAAGGTGATATTCGCGATATCGCCATTGAAAACGCAAGCATGGTGGTGCTGAATTTTACCCTGCAAT‑TCCTGGAACCTTCCGAGCGCCAGGCGTTA‑CTGGATAAAATTTATCAAGGGCTGAACCCCGGCGGCGCGCTGGTGCTTAGCGAAAAATT  >  CP042583/1633388‑1633946

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A