Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A5 F210 I1 R1 4929 268.4 3907572 96.3% 3762991 273.2

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA CP042583 1,633,666 3 bp→TCG intergenic (–/–) – / – –/–

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0425831,633,6660AT98.8% 372.1 / NA 165intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base A (0/1);  major base T (81/80);  minor base C (2/0);  total (83/82)
Fisher's exact test for biased strand distribution p-value = 4.97e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*CP0425831,633,6670GC97.6% 370.4 / NA 164intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base G (0/0);  major base C (80/80);  minor base T (2/2);  total (82/82)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*CP0425831,633,6680CG98.2% 374.9 / NA 164intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base C (1/2);  new base G (81/80);  total (82/82)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 165 total aligned reads displayed.

GGGAGTTGGTTTTCTCCCTGCGTTAACGCACAATACGCCACTTTCTTTTTCCCGGATTTTTACGTTATGTCTCACCGCGACACGCTATTTTCTGCCCCTATCGCCAGACTGGGCGACTGGACCTTTGATGAACGGGTAGCTGAAGTCTTCCCGGATATGATCCAGCGTTCCGTACCCGGCTATTCCAATATTATTTCCATGATTGGTATGTTAGCCGAGCGCTTCGTTCAACCTGGTACGCAGGTTTACGATCTGGGTTGTTCTCTGGGCGCGGCGACGCTCAGC‑GT‑GCGTCGCAACATTCATCATGATAATTGCAAAATTATTGCCATCGACAACTCCCCGGCGATGATTGAACGCTGCCGTCGTCATATTGACGCCTATAAAGCCCCTACGCCAGTAGACGTCATTGAAGGTGATATTCGCGATATCGCCATTGAAAACGCAAGCATGGTGGTGCTGAATTTTACCCTGCAATTCCTGGAACCTTCCGAGCGCCAGGCGTTACTGGATAAAATTTATCAAGGGCTGAACCCCGGCGGCGCGCTGGTGCTTAGCGAAAAATT  >  CP042583/1633384‑1633946
                                                                                                                                                                                                                                                                                          |||                                                                                                                                                                                                                                                                                        
    gttgttTTTCTCGCTGCGTTAGGGCAAAATGCGCCACTTTCTTTTTACGGGATTTTTTCGTTTTGTCTGACCGCGAAAGGCTATTTTCTGCCCCTATCGCCAGACTGGGCGGCTGGACCTTTGATGAACGGGTGGCTGAAGTCTTCCCGGATATGATCCAGCGTTCCGTACCCGGCTATTCCAATATTATTTCCATGATTGGTATGTTAGCCGAGCGCTTCGTTCAACCTGGTACGCAGGTTTACGATCTGGGTTGTTCTCTGGGCGCGGCGACGCTCTCG‑GT‑GCGTCg                                                                                                                                                                                                                                                                                <  2:1707562/289‑1 (MQ=255)
       ggTTTTCTCCCTGCGTTAGCGCACAATACGCCACTTTCTTTTTCCCGGATTTTTACGTTATGTCTCACCGCGACACGCTATTTTCTGCCCCTATCGCCAGACTGGGCGACTGGACCTTTGATGAACGGGTAGCTGAAGTCTTCCCGGATATGATCCAGCGTTCCGTACCCGGCTATTCCAATATTATTTCCATGATTGGTATGTTAGCCGAGCGCTTCGTTCAACCTGGTACGCAGGTTTACGATCTGGGTTGTTCTCTGGGCGCGGCGACGCTCTCG‑GT‑GCGTCGCa                                                                                                                                                                                                                                                                              >  1:532887/1‑288 (MQ=255)
              tcCCTGCGTTAGCGCACAATACGCCACTTTCTTTTTCCCGGATTTTTACGTTATGTCTCACCGCGACACGCTATTTTCTGCCCCTATCGCCAGACTGGGCGACTGGACCTTTGATGAACGGGTAGCTGAAGTCTTCCCGGATATGATCCAGCGTTCCGTACCCGGCTATTCCAATATTATTTCCATGATTGGTATGTTAGCCGAGCGCTTCGTTCAACCTGGTACGCAGGTTTACGATCTGGGTTGTTCTCTGGGCGCGGCGACGCTCTCG‑GT‑GCGTCGCAACATtcat                                                                                                                                                                                                                                                                      <  1:1073818/289‑1 (MQ=255)
               ctctggtttAGCGCACAATACGCCTCTTTCTTTTTCCCGGATTTTTACGTTATGTCTCACCGGGACACGCTATTTTCTGCCCCTATCGCCAGACTGGGCGACTGGACCTTTGATGCACGGGTAGCTGAAGTCTTCCCGGATATGATCCAGCGTTCCGTACCCGGCTATTCCAATATTATTTCCATGATTGGTATGTTAGCCGAGCGCTTCGTTCAACCTGGTACGCAGGTTTACGATCTGGGTTGTTCTCTGGGCGCGGCGACGCTCTCG‑GT‑GCGTCGCAACATtcatc                                                                                                                                                                                                                                                                     <  2:1383022/282‑1 (MQ=255)
                  tGCGTTAGCGCACAATACGCCACTTTCTTTTTCCCGGATTTTTACGTTATGTCTCACCGCGACACGCTATTTTCTGCCCCTATCGCCAGACTGGGCGACTGGACCTTTGATGAACGGGTAGCTGAAGTCTTCCCGGATATGATCCAGCGTTCCGTACCCGGCTATTCCAATATTATTTCCATGATTGGTATGTTAGCCGAGCGCTTCGTTCAACCTGGTACGCAGGTTTACGATCTGGGTTGTTCTCTGGGCGCGGCTAGCCTCCCG‑GG‑TCGTCGCAACATccacaatt                                                                                                                                                                                                                                                                  >  2:168385/1‑284 (MQ=255)
                        agcGCACAATACGCCACTTTCTTTTTCCCGGATTTTTACGTTATGTCTCACCGCGACACGCTATTTTCTGCCCCTATCGCCAGACTGGGCGACTGGACCTTTGATGAACGGGTAGCTGAAGTCTTCCCGGATATGATCCAGCGTTCCGTACCCGGCTATTCCAATATTATTTCCATGATTGGTATGTTAGCCGAGCGCTTCGTTCAACCTGGTACGCAGGTTTACGATCTGGGTTGTTCTCTGGGCGCGGGGACGCTCCTG‑GT‑GCGTGCCCACATTCATCATGATAAtt                                                                                                                                                                                                                                                            >  2:175131/3‑289 (MQ=255)
                          gtcacaGTGCGCCACTTTCTTTTTCCCGGATTTTTCCGTTATGTCCCGCCGCGACACGCTATTTTCTGCCCCTATCGCCAGACTGGGCGACTGGACCTTTGATGAACGGGTAGCTGAAGTCTTCCCGGATATGATCCAGCGTTCCGTACCCGGCTATTCCAATATTATTTCCATGATTGGTATGTTAGCCGAGCGCTTCGTTCAACCTGGTACGCAGGTTTACGATCTGGGTTGTTCTCTGGGCGCGGCGACGCTCTCG‑GT‑GCGTCGCAACATTCATCATGATAATTg                                                                                                                                                                                                                                                           <  2:1441622/286‑1 (MQ=255)
                           gCACAATACGCCACTTTCTTTTTCCCGGATTTTTACGTTATGTCTCACCGCGACACGCTATTTTCTGCCCCTATCGCCAGACTGGGCGACTGGACCTTTGATGAACGGGTAGCTGAAGTCTTCCCGGATATGATCCAGCGTTCCGTACCCGGCTATTCCAATATTATTTCCATGATTGGTATGTTAGCCGAGCGCTTCGTTCAACCTGGTACGCAGGTTTACGATCTGGGTTGTTCTCTGGGCGCGGCGACGCTCTCG‑GT‑GCGTCGCAACATTCATCATGATAATTGCa                                                                                                                                                                                                                                                         <  1:912587/289‑1 (MQ=255)
                              caATACGCCACTTTCTTTTTCCCGGATTTTTACGTTATGTCTCACCGCGACACGCTATTTTCTGCCCCTATCGCCAGACTGGGCGACTGGACCTTTGATGAACGGGTAGCTGAAGTCTTCCCGGATATGATCCAGCGTTCCGTACCCGGCTATTCCAATATTATTTCCATGATTGGTATGTTAGCCGAGCGCTTCGTTCAACCTGGTACGCAGGTTTACGATCTGGGTTGTTCTCTGGGCGCGGCGACGCTCTCG‑GT‑GCGTCGCAACATTCATCATGATAATTGCaaaa                                                                                                                                                                                                                                                      >  1:208959/1‑289 (MQ=255)
                              caATACGCCACTTTCTTTTTCCCGGATTTTTACGTTATGTCTCACCGCGACACGCTATTTTCTGCCCCTATCGCCAGACTGGGCGACTGGACCTTTGATGAACGGGTAGCTGAAGTCTTCCCGGATATGATCCAGCGTTCCGTACCCGGCTATTCCAATATTATTTCCATGATTGGTATGTTAGCCGAGCGCTTCGTTCAACCTGGTACGCAGGTTTACGATCTGGGTTGTTCTCTGGGCGCGGCGACGCTCTCG‑GT‑GCGTCGCAACATTCATCATGATAATTGCaaaa                                                                                                                                                                                                                                                      >  1:1499866/1‑289 (MQ=255)
                              caATACGCCACTTTCTTTTTCCCGGATTTTTACGTTATGTCTCACCGCGACACGCTATTTTCTGCCCCTATCGCCAGACTGGGCGACTGGACCTTTGATGAACGGGTAGCTGAAGTCTTCCCGGATATGATCCAGCGTTCCGTACCCGGCTATTCCAATATTATTTCCATGATTGGTATGTTAGCCGAGCGCTTCGTTCAACCTGGTACGCAGGTTTACGATCTGGGTTGTTCTCTGGGCGCGGCGACG‑TCTTCTGC‑TCGGCGGCACATTCATCATGCTACTTGCaaaa                                                                                                                                                                                                                                                      >  2:628743/1‑289 (MQ=255)
                              caATACGCCACTTTCTTTTTCCCGGATTTTTACGTTATGTCTCACCGCGACACGCTATTTTCTGCCCCTATCGCCAGACTGGGCGACTGGACCTTTGATGAACGGGTAGCTGAAGTCTTCCCGGATATGATCCAGCGTTCCGTACCCGGCTATTCCAATATTATTTCCATGATTGGTATGTTAGCCGAGCGCTTCGTTCAACCTGGTACGCAGGTTTACGATCTGGGTTGTTCCCTGGGCGCGGCGACGCTCTCG‑GG‑TCGTCCCTTCTTTCATCATGattattcataaa                                                                                                                                                                                                                                                      >  2:434861/1‑283 (MQ=255)
                               caatcGCCACTTTCTTTTTCCCGGATTTTTACGTTATGTCTCACCGCGACACGCTATTTTCTGCCCCTATCGCCAGACTGGGCGACTGGACCTTTGATGAACGGGTAGCTGAAGTCTTCCCGGATATGATCCAGCGTTCCGTACCCGGCTATTCCAATATTATTTCCATGATTGGTATGTTAGCCGAGCGCTTCGTTCAACCTGGTACGCAGGTTTACGATCTGGGTTGTTCTCTGGGCGCGGCGACGCTCTCG‑GT‑GCGTCGCAACATTCATCATGATAATTGCAAAat                                                                                                                                                                                                                                                     >  1:1034349/5‑289 (MQ=255)
                                 tACGCCACTTTCTTTTTCCCGGATTTTTACGTTATGTCTCACCGCGACACGCTATTTTCTGCCCCTATCGCCAGACTGGGCGACTGGACCTTTGATGAACGGGTAGCTGAAGTCTTCCCGGATATGATCCAGCGTTCCGTACCCGGCTATTCCAATATTATTTCCATGATTGGTATGTTAGCCGAGCGCTTCGTTCAACCTGGTACGCAGGTTTACGATCTGGGTTGTTCTCTGGGCGCGGCGACGCTCTCG‑GT‑GCGTCGCAACATTCATCAGGATAATTGCAAAatta                                                                                                                                                                                                                                                   >  1:741824/1‑289 (MQ=255)
                                         tttctttTTCCCGGATTTTTACGTTATGTCTCACCGCGACACGCTATTTTCTGCCCCTATCGCCAGACTGGGCGACTGGACCTTTGATGAACGGGTAGCTGAAGTCTTCCCGGATATGATCCAGCGTTCCGTACCCGGCTATTCCAATATTATTTCCATGATTGGTATGTTAGCCGAGCGCTTCGTTCAACCTGGTACGCAGGTTTACGATCTGGGTTGTTCTCTGGGCGCGGCGACGCTCTCG‑GT‑GCGTCGCAACATTCATCATGATAATTGCAAAATTATTGCCAt                                                                                                                                                                                                                                            >  2:1104058/1‑288 (MQ=255)
                                         tttctttTTCCCGGATTTTTACGTTATGTCTCACCGCGACACGCTATTTTCTGCCCCTATCGCCAGACTGGGCGACTGGACCTTTGATGAACGGGTAGCTGAAGTCTTCCCGGATATGATCCAGCGTTCCGTACCCGGCTATTCCAATATTATTTCCATGATTGGTATGTTAGCCGAGCGCTTCGTTCAACCTGGTACGCAGGTTTACGATCTGGGTTGTTCTCTGGGCGCGGCGACGCTCTCG‑GT‑GCGTCGCAACATTCATCATGATAATTGCAAAATTATTGCCATc                                                                                                                                                                                                                                           >  1:1374235/1‑289 (MQ=255)
                                         tttctttTTCCCGGATTTTTACGTTATGTCTCACCGCGACACGCTATTTTCTGCCCCTATCGCCAGACTGGGCGACTGGACCTTTGATGAACGGGTAGCTGAAGTCTTCCCGGATATGATCCAGCGTTCCGTACCCGGCTATTCCAATATTATTTCCATGATTGGTATGTTAGCCGAGCGCTTCGTTCAACCTGGTACGCAGGTTTACGATATGGGTTGTTCCCTGGGCGCGGCCACGCTCTCG‑GT‑GGCTCGCAACACTCATCAGGATAATTGCAACATTTTTTCCAt                                                                                                                                                                                                                                            >  2:1336141/1‑288 (MQ=255)
                                           tctttTTCCCGGATTTTTACGTTATGTCTCACCGCGACACGCTATTTTCTGCCCCTATCGCCAGACTGGGCGACTGGACCTTTGATGAACGGGTAGCTGAAGTCTTCCCGGATATGATCCAGCGTTCCGTACCCGGCTATTCCAATATTATTTCCATGATTGGTATGTTAGCCGAGCGCTTCGTTCAACCTGGTACGCCGGTTTACGATCTGGGTTGTTCTCTGGGCGCGGCGACGCCCTCG‑GT‑GCGTCGCCACCTTCATCATTAAAATTGCCAAATTTTTGCCATCg                                                                                                                                                                                                                                          >  2:1256489/1‑288 (MQ=255)
                                           tctttTTCCCGGATTTTTACGTTATGTCTCACCGCGACACGCTATTTTCTGCCCCTATCGCCAGACTGGGCGACTGGACCTTTGATGAACGGGTAGCTGAAGTCTTCCCGGATATGATCCAGCGTTCCGTACCCGGCTATTCCAATATTATTTCCATGATTGGTATGTTAGCCGAGCGCTTCGTTCAACCTGGTACGCAGGTTTACGATCTGGGTTGTTCCCTGGGCGCGGCGACGCTCTCG‑GT‑GCGTCGCAACATTCATCATGATAATTGCAAAATTATTGCCATCg                                                                                                                                                                                                                                          >  1:129147/1‑288 (MQ=255)
                                              ttttCCCGGATTTTTACGTTATGTCTCACCGCGACACGCTATTTTCTGCCCCTATCGCCAGACTGGGCGACTGGACCTTTGATGAACGGGTAGCTGAAGTCTTCCCGGATATGATCCAGCGTTCCGTACCCGGCTATTCCAATATTATTTCCATGATTGGTATGTTAGCCGAGCGCTTCGTTCAACCTGGTACGCAGGTTTACGATCTGGGTTGTTCTCTGGGCGCGGCGACGCTCTCG‑GT‑GCGTCGCAACATTCATCATGATAATTGCAAAATTATTGCCATCGACaa                                                                                                                                                                                                                                      <  1:794116/289‑1 (MQ=255)
                                                    cGGATTTTTACGTTATGTCTCACCGCGACACGCTATTTTCTGCCCCTATCGCCAGACTGGGCGACTGGACCTTTGATGAACGGGTAGCTGAAGTCTTCCCGGATATGATCCAGCGTTCCGTACCCGGCTATTCCAATATTATTTCCATGATTGGTATGTTAGCCGAGCGCTTCGTTCAACCTGGTACGCAGGTTTACGATCTGGGTTGTTCTCTGGGCGCGGCGACGCTCTCG‑GT‑GCGTCGCAACATTCATCATGATAATTGCAAAATTATTGCCATCGACAACTcccc                                                                                                                                                                                                                                <  1:1560349/289‑1 (MQ=255)
                                                        tttttACGTTATGTCTCACCGCGACACGCTATTTTCTGCCCCTATCGCCAGACTGGGCGACTGGACCTTTGATGAACGGGTAGCTGAAGTCTTCCCGGATATGATCCAGCGTTCCGTACCCGGCTATTCCAATATTATTTCCATGATTGGTATGTTAGCCGAGCGCTTCGTTCAACCTGGTACGCAGGTTTACGATCTGGGTTGTTCTCTGGGCGCGGCGACGCTCTCG‑GT‑GCGTCGCAACATTCATCATGATAATTGCAAAATTATTGCCATCGACAACTCCCCGGc                                                                                                                                                                                                                             <  2:1499866/288‑1 (MQ=255)
                                                               ctttcgTCGCACCGCGACACGCTATTTTCTTCCCCTATCGCCAGACTGTGCGACTGGACCTTTGATGAACTGGTAGCTGAATTCTTCCCGGATATGATCCAGCGTTCCGTACCCGGCTATTCCAATCTTATTTCCATGATTGGTCTGTTAGCCGAGCGCTTCGTTCAACCTGGTACGCAGGTTTACGATCTGGGTTGTTCTCTGGGCGCGGCGACGCTCTCG‑GT‑GCGTCGCAACATTCATCATGATAATTGCAAAATTATTGCCATCGACAACTCCCCGGCGATGATTg                                                                                                                                                                                                                     <  2:916112/284‑1 (MQ=255)
                                                                 tATGTCTCACCGCGACACGCTATTTTCTGCCCCTATCGCCAGACTGGGCGACTGGACCTTTGATGAACGGGTAGCTGAAGTCTTCCCGGATATGATCCAGCGTTCCGTACCCGGCTATTCCAATATTATTTCCATGATTGGTATGTTAGCCGAGCGCTTCGTTCAACCTGGTACGCAGGTTTACGATCTGGGTTGTTCTCTGGGCGCGGCGACGCTCTCG‑GT‑GCGTCGCAACATTCATCATGATAATTGCCAAATGATTGCCATCGACAACTCCCCGGCGAGGAATGaa                                                                                                                                                                                                                   >  2:657865/1‑289 (MQ=255)
                                                                       tcACCGCGACACGCTATTTTCTGCCCCTATCGCCAGACTGGGCGACTGGACCTTTGATGAACGGGTAGCTGAAGTCTTCCCGGATATGATCCAGCGTTCCGTACCCGGCTATTCCAATATTATTTCCATGATTGGTATGTTAGCCGAGCGCTTCGTTCAACCTGGTACGCAGGTTTACGATCTGGGTTGTTCTCTGGGCGCGGCGACGCTCTCG‑GT‑GCGTCGCAACATTCATCATGATAATTGCAAAATTATTGCCATCGACAACTCCCCGGCGATGATTGAACGCTGc                                                                                                                                                                                                             <  2:532887/289‑1 (MQ=255)
                                                                         accgggactgtcTATTTTCGCCCCCTATCGCCAGCCTGGGAGACTGGTCCTTTGATGAACGTGTAGCTGAAGTCGTCCCGGATATGATCCAGCGTTCCGTACCCGGCTATTCCAATATTATTTCCATGATTGGTATGTTAGCCTAGCGCTTCGTTCAACCTGGTACGCAGGTTTACGATCTGGGTTGTTCTCTGGGCGCGGCGACGCTCTCG‑GT‑GCGTCGCAACATTCATCATGATAATTGCAAAATTATTGCCATCGACAACTCCCCGGCGATGATTGAACGCTGCcg                                                                                                                                                                                                           <  2:1552318/278‑1 (MQ=255)
                                                                         acccgcgcccGCTATTTTCTGCCCCTATCGCCAGACTTGGCGACTGGACCTTTGATGGACGGGTAGCTGAAGTCTTCCCGGATATGATCCAGCGTTCCGTACCCGGCTATTCCAATATTATTTCCATGATTGGTATGTTAGCCGAGCGCTTCGTTCAACCTGGTACGCAGGTTTACGATCTGGGTTGTTCTCTGGGCGCGGCGACGCTCTCG‑GT‑GCGTCGCAACATTCATCATGATAATTGCAAAATTATTGCCATCGACAACTCCCCGGCGATGATTGAACGCTGCcg                                                                                                                                                                                                           <  2:478070/280‑1 (MQ=255)
                                                                            gcgACACGCTATTTTCTGCCCCTATCGCCAGACTGGGCGACTGGACCTTTGATGAACGGGTAGCTGAAGTCTTCCCGGATATGATCCAGCGTTCCGTACCCGGCTATTCCAATATTATTTCCATGATTGGTATGTTAGCCGAGCGCTTCGTTCAACCTGGTACGCAGGTTTACGATCTGGGTTGTTCTCTGGGCGCGGCGACGCTCTCG‑GT‑GCGTCGCAACATTCATCATGATAATTGCAAAATTATTGCCATCGACAACTCCCCGGCGATGATTGAACGCTGCcgtcg                                                                                                                                                                                                        <  1:1142554/289‑1 (MQ=255)
                                                                                   gCTATTTTCTGCCCCTATCGCCAGACTGGGCGACTGGACCTTTGATGAACGGGTAGCTGAAGTCTTCCCGGATATGTTCCAGCGTTCCGTACCCGGCTATTCCAATATTATTTCCATGATTGGTATGTTAGCCGAGCGCTTCGTTCAACCTGGTACGCAGGTTTACGATCTGGGTTGTTCTCTGGGCGCGGCGACGCTCTCG‑GT‑GCGTCGCAACATTCATCATGATAATTGCAAAATTATTGCCATCGACAACTCCCCGGCGATGATTGAACGCTGCCGTCGTCATAtt                                                                                                                                                                                                 <  2:1551301/289‑1 (MQ=255)
                                                                                      aTTTTCTGCCCCTATCGCCAGACTGGGCGACTGGACCTTTGATGAACGGGTAGCTGAAGTCTTCCCGGATATGATCCAGCGTTCCGTACCCGGCTATTCCAATATTATTTCCATGATTGGTATGTTAGCCGAGCGCTTCGTTCAACCTGGTACGCAGGTTTACGATCTGGGTTGTTCTCTGGGCGCGGCGACGCTCTCG‑GT‑GCGTCGCAACATTCATCATGATAATTGCAAAATTATTGCCATCGACAACTCCCCGGCGATGATTGAACGCTGCCGTCGTCATATTGAc                                                                                                                                                                                              <  1:1838973/289‑1 (MQ=255)
                                                                                               ccttgtCGCCAGCCGGGGCGACTGGACTTTTGGTGACCGGGTAGCTGAATTCTTCCCGGATATGTTCCCGCGTTCCGTACCCGGCTATTCCAATATTATTTCCATGATTGGTATGTTAGCCGAGCGCTTCGTTCAACCTGGTACGCAGGTTTACGATCTGGGTTGTTGTCTGGGCGCGGCGACGCTCTCG‑GT‑GCGTCGCAACATTCATCATGATAATTGCAAAATTATTGCCATCGACAACTCCCCGGCGATGATTGAACGCTGCCGTCGTCATATTGACGCCTATaaa                                                                                                                                                                                     <  2:1534790/284‑1 (MQ=255)
                                                                                               cccTAGCGCCAGGCTGGGCGACTGGACCTTTGATGAACGGGTAGCTTAAGTCTTCCCGGATATGATCCAGCGTTCCGTACCCGGCTATTCCAATATTATTTCCATGATTGGTATGTTAGCCGAGCGCTTCGTTCAACCTGGTACGCAGGTTTACGATCTGGGTTGTTCTCTGGGCGCGGCGACGCTCTCG‑GT‑GCGTCGCAACATTCATCATGATAATTGCAAAATTATTGCCATCGACAACTCCCCGGCGATGATTGAACGCTGCCGTCGTCATATTGACGCCTATaaa                                                                                                                                                                                     <  2:1812431/289‑1 (MQ=255)
                                                                                                   aTCGCCAGACTGGGCGACTGGACCTTTGATGAACGGGTAGCTGAAGTCTTCCCGGATATGATCCAGCGTTCCGTACCCGGCTATTCCAATATTATTTCCATGATTGGTATGTTAGCCGAGCGCTTCGTTCAACCTGGTACGCAGGTTTACGATCTGGGTTGTTCTCTGGGCGCGGCGACGCTCTCG‑GT‑GCGTCGCAACATTCATCATGATAATTGCAAAATTATTGCCATCGACAACTCCCCGGCGATGATTGAACGCTGCCGTCGTCATATTGACGCCTATAAAGcc                                                                                                                                                                                  >  1:1411183/1‑288 (MQ=255)
                                                                                                    tCGACAGACTGGTCGACTGAACCTTTGATGAACGGGTATCTGAAGTCTTCCCGGATATGATACAGCTTGCCGTACCCTGCTATTCCAATATTATTTCCATGATTGGTATGTTAGCCGAGCGCTTCGTTCAACCTGGTACGCAGGTTGACGATCTGGGTTGTTCTCTGGGCGCGGCGACGCTCTCG‑GT‑GCGTCGCAACATTCATCATGATAATTGCAAAATTATTGCCATCGACAACTCCCCGGCGATGATTGAACGCTGCCGTCGTCATATTGACGCCTATAAAGcccc                                                                                                                                                                                <  2:1226656/289‑1 (MQ=255)
                                                                                                       ccAGACTGGGCGACTGGTCCTTTGATGAACGGGTAGCTGAAGTCTTCCCGGATATGATCCAGCGTTCCGTACCCGGCTATTCCAATATTATTTCCATGATTGGTATGTTAGCCGAGCGCTTCGTTCAACCTGGTACGCAGGTTTACGATCTGGGTTGTTCTCTGGGCGCGGCGACGCTCTCG‑GT‑GCGTCGCAACATTCATCATGATAATTGCAAAATTATTGCCATCGACAACTCCCCGGCGATGATTGAACGCTGCCGTCGTCATATTGACGCCTATAAAGCCCCTAc                                                                                                                                                                             <  1:896901/289‑1 (MQ=255)
                                                                                                             tGGGCGACTGGACCTTTGATGAACGGGTAGCTGAAGTCTTCCCGGATATGATCCAGCGTTCCGTACCCGGCTATTCCAATATTATTTCCATGATTGGTATGTTAGCCGAGCGCTTCGTTCAACCTGGTACGCAGGTTTACGATCTGGGTTGTTCTCTGGGCGCGGCGACGCTCTCG‑GT‑GCGTCGCAACATTCATCATGATAATTGCAAAATTATTGCCATCGACAACTCCCCGGCGATGATTGAACGCTGCCGTCGTCATATTGACGCCTATAAAGCCCCTACGCCAGt                                                                                                                                                                       <  2:877708/289‑1 (MQ=255)
                                                                                                              gggCGACTGGACCTTTGATGAACGGGTAGCTGAAGTCTTCCCGGATATGATCCAGCGTTCCGTACCCGGCTATTCCAATATTATTTCCATGATTGGTATGTTAGCCGAGCGCTTCGTTCAACCTGGTACGCAGGTTTACGATCTGGGTTGTTCTCTGGGCGCGGCGACGCTCTCG‑GT‑GCGTCGCAACATTCATCATGATAATTGCACAATTATTGCCATCGACAACTCCCCGGCGATGATTGAACGCTGCCGTCGTCATATTGAAGCCTATAACGCCCCTACGcccaca                                                                                                                                                                      >  2:863051/1‑285 (MQ=255)
                                                                                                                  gACTGGACCTTTGATGAACGGGTAGCTGAAGTCTTCCCGGATATGATCCAGCGTTCCGTACCCGGCTATTCCAATATTATTTCCATGATTGGTATGTTAGCCGAGCGCTTCGTTCAACCTGGTACGCAGGTTTACGATCTGGGTTGTTCTCTGGGCGCGGCGACGCTCTCG‑GT‑GCGTCGCAACATTCATCATGATAATTGCAAAATTATTGCCATCGACAACTCCCCGGCGATGATTGAACGCTGCCGTCGTCATATTGACGCCTATAAAGCCCCTACGCCAGTAGAc                                                                                                                                                                   <  1:1736769/288‑1 (MQ=255)
                                                                                                                  gACTGGACCTTTGATGAACGGGTAGCTGAAGTCTTCCCGGATATGATCCAGCGTTCCGTACCCGGCTATTCCAATATTATTTCCATGATTGGTATGTTAGCCGAGCGCTTCGTTCAACCTGGTACGCAGGTTTACGATCTGGGTTGTTCTCTGGGCGCGGCGACGCTCTCG‑GT‑GCGTCGCAACATTCATCATGATAATTGCAAAATTATTGCCATCGACAACTCCCCGGCGATGATTGAACGCTGCCGTCGTCATATTGACGCCTATAAAGCCCCTACGCCAGTAGAc                                                                                                                                                                   <  2:179365/288‑1 (MQ=255)
                                                                                                                      ggACCTTTGATGAACGGGTAGCTGAAGTCTTCCCGGATATGATCCAGCGTTCCGTACCCGGCTATTCCAATATTATTTCCATGATTGGTATGTTAGCCGAGCGCTTCGTTCAACCTGGTACGCAGGTTTACGATCTGGGTTGTTCTCTGGGCGCGGCGACGCTCTCG‑GT‑GCGTCGCAACATTCATCATGATAATTGCAAAATTATTGCCATCGACAACTCCCCGGCGATGATTGAACGCTGCCGTCGTCATATTGACGCCTATAAAGCCCCTACGCCAGTAGACGTCAt                                                                                                                                                              <  1:197451/289‑1 (MQ=255)
                                                                                                                         ccTTTGATGAACGGGTAGCTGAAGTCTTCCCGGATATGATCCAGCGTTCCGTACCCGGCTATTCCAATATTATTTCCATGATTGGTATGTTAGCCGAGCGCTTCGTTCAACCTGGTACGCAGGTTTACGATCTGGGTTGTTCTCTGGGCGCGGCGACGCTCTCG‑GT‑GCGTCGCAACATTCATCATGATAATTGCAAAATTATTGCCATCGACAACTCCCCGGCGATGATTGAACGCTGCCGTCGTCATATTGACGCCTATAAAGCCCCTACGCCAGTAGACGTCATTGa                                                                                                                                                           <  1:385577/289‑1 (MQ=255)
                                                                                                                                    cGGGTAGCTGAAGTCTTCCCGGATATGATCCAGCGTTCCGTACCCGGCTATTCCAATATTATTTCCATGATTGGTATGTTAGCCGAGCGCTTCGTTCAACCTGGTACGCAGGTTTACGATCTGGGTTGTTCTCTGGGCGCGGCGACGCTCTCG‑GT‑GCGTCGCAACATTCATCATGATAATTGCAAAATTATTGCCATCGACAACTCCCCGGCGATGATTGAACGCTGCCGTCGTCATATTGACGCCTATAAAGCCCCTACGCCAGTAGACGTCATTGAAGGTGATATTc                                                                                                                                                >  1:1199456/1‑289 (MQ=255)
                                                                                                                                        tAGCTGAAGTCTTCCCGAGTTTGCTCCAGCGTTCCGTACCCGGCTATTCCAATATTATTTCCATGATTGGTAGTTTAGCCGAGCCCTTCGTTCAACCTGGTACGCAGTTTTACGATCTGGGTTGTGCTCTGGGCGCGGCGACGCTCTCG‑GT‑GCGTCGCAACATTCATCATGATAATTGCAAAATTATTGCCATCGACAACTCCCCGGCGATGATCGAACGCTGCCGTCGTCATATTGACGCCTATAAAGCCCCTACGCCAGTAGACGTCATTGAAGGTGATATTcgcg                                                                                                                                             <  2:1564120/288‑1 (MQ=255)
                                                                                                                                             gAAGTCTTTCCGGTTAGGGTCCGGCGTTCATTAGCCGGCTATTCCAATATTATTTCCATTATTGGTATGTTAGCCGAGCGCTTCGTTCAACCTGCGACGCAGGTTTACGATCTGGGTTGTTCTCTGGGCGCGGCGACGCTCTCG‑GT‑GCGTGGCAACATTCATCATGATAATTGCAAAATTATTGCCATCGACAACTCCCCGGCGATGATTGAACGCTGCGGTCGTCATATTGACGCCTATAAAGCCCCTACGCCAGTAGACGTCATTGAAGGTGATATTCGCGATATCg                                                                                                                                       <  2:1335277/289‑1 (MQ=255)
                                                                                                                                             gAAGTCTTCCCGGATATGATCCAGCGTTCCGTACCCGGCTATTCCAATATTATTTCCATGATTGGTATGTTAGCCGAGCGCTTCGTTCAACCTGGTACGCAGGTTTACGATCTGGGTTGTTCTCTGGGCGCGGCGACGCTCTCG‑GT‑GCGTCGCAACATTCATCATGATAATTGCAAAATTATTGCCATCGACAACTCCCCGGCGATGATTGAACGCTGCCGTCGTCATATTGACGCCTATAAAGCCCCTACGCCAGTAGACGTCATTGAAGGTGATATTCGCGATATCg                                                                                                                                       <  1:1104058/289‑1 (MQ=255)
                                                                                                                                               agtttgtccGGATATGATCCAGCGTTCCGTACCCGGCTATTCCAATAGTATTTCCATGATTGGTATGTTAGCCGAGCGCTTCGTTCCACCTGGTACGCAGGTTTACGATCTGGGTTGTTCTCTGGGCGCGGCGACGCTCTCG‑GT‑GCGTCGCAACATTCATCATGATAATTGCAAAATTATTGCCATCGACAACTCCCCGGCGATGATTGAACGCTGCCGTCGTCATATTGACGCCTATAAAGCCCCTACGCCAGTAGACGTCATTGAAGGTGATATTCGCGATATCGc                                                                                                                                      <  2:1428275/281‑1 (MQ=255)
                                                                                                                                                   ttCCCGGATATGATCCAGCGTTCCGTACCCGGCTATTCCAATATTATTTCCATGATTGGTATGTTAGCCGAGCGCTTCGTTCAACCTGGTACGCAGGTTTACGATCTGGGTTGTTCTCTGGGCGCGGCGACGCTCTCG‑GT‑GCGTCGCAACATTCATCATGATAATTGCAAAATTATTGCCATCGACAACTCCCCGGCGATGATTGAACGCTGCCGTCGTCATATTGACGCCTATAAAGCCCCTACGCCAGTAGACGTCATTGAAGGTGATATTCGCGATATCGcc                                                                                                                                     <  1:182462/285‑1 (MQ=255)
                                                                                                                                                     cccGGATCTGGTCCAGCGTTCCGTACCCGGCTATTCCAATATTATTTCCATGATTGGTATGTTAGCCGAGCGCTTCGTTCAACCTGGTACGCAGGTTTACGATCTGGGTTGTTCTCTGGGCGCGGCGACGCTCTCG‑GT‑GCGTCGCAACATTCATCATGATAATTGCAAAATTATTGCCATCGACAACTCCCCGGCGATGATTGAACGCTGCCGTCGTCATATTGACGCCTATAAAGCCCCTACGCCAGTAGACGTCATTGAAGGTGATATTCGCGATATCGCCATTGaa                                                                                                                               <  1:100483/289‑1 (MQ=255)
                                                                                                                                                     cccGGATATGATCCAGCGTTCCGTACCCGGCTATTCCAATATTATTTCCATGATTGGTATGTTAGCCGAGCGCTTCGTTCAACCTGGTACGCAGGTTTACGATCTGGGTTGTTCTCTGGGCGCGGCGACGCTCTCG‑GT‑GCGTCGCAACATTCATCATGATAATTGCAAAATTATTGCCATCGACAACTACCCGGCGATGATTGAACGCTGCCGTAGTCATATTGACGCCTATAAAGCCCCTACGCCAGTAGACGTCATTGAAGGTGATATTCGCGATATCGCCATTGaa                                                                                                                               >  1:1689990/1‑289 (MQ=255)
                                                                                                                                                           tttGATCCATTGTTCCGTACCCGGCTATTCCAATTTTATTTCCATGATTGGTATGTTCGCCGAGCGCTTCGTTCAACCTGGTACGCAGGTTTACGATCTGGGTTGTTCTCTGGGCGCGGCGACGCTCTCG‑GT‑GCGTCGCAACATTCATCATGATAATTGCAAAATTATTGCCATCGACAACTCCCCGGCGATGATTGAACGCTGCCGTCGTCATATTGACGCCTATAAAGCCCCTACGCCAGTAGACGTCATTGAAGGTGATATTCGCGATATCGCCATTGAAAACGCa                                                                                                                         <  2:808122/287‑1 (MQ=255)
                                                                                                                                                                  cAGCGTTCCGTACCCGGCTATTCCAATATTATTTCCATGATTGGTATGTTAGCCGAGCGCTTCGTTCAACCTGGTACGCAGGTTTACGATCTGGGTTGTTCTCTGGGCGCGGCGACGCTCTCG‑GT‑GCGTCGCAACATTCATCATGATAATTGCAAAATTATTGCCATCGACAACTCCCCGGCGATGATTGAACGCTGCCGTCGTCATATTGACGCCTATAAAGCCCCTACGCCAGTAGACGTCATTGAAGGTGATATTCGCGATATCGCCATTGAAAACGCatcgatgg                                                                                                                  <  1:1256489/289‑8 (MQ=255)
                                                                                                                                                                       gtCCGTAACCTGGTGTTCCAATAGTATGTCCATGATTGGTATGTTAGCCGGGCGCTTCGTTCCACCTGGTACGCAGGTTTACGATCGGGGTTGTTCGCTGGGCGCGGCGACGCTCTCG‑GT‑GCGTCGCAACATTCATCATGATAATTGCAAAATTATTGCCATCGACAACTCCCCGGCGATGATTGAACGCTGCCGTCGTCATATTGACGCCTATAAAGCCCCTACGCCAGTAGACGTCATTGAAGGTGATATTCGCGATATCGCCATTGAAAACGCATCGATGgtggtg                                                                                                             <  2:1399358/288‑1 (MQ=255)
                                                                                                                                                                          cGTACCCGGCTATTCCAATATTATTTCCATGATTGGTATGTTAGCCGAGCGCTTCGTTCAACCTGGTACGCAGGTTTACGATCTGGGTTGTTCTCTGGGCGCGGCGACGCTCTCG‑GT‑GCGTCGCAACATTCATCATGATAATTGCAAAATTATTGCCATCGACAACTCCCCGGCGATGATTGAACGCTGCCGTCGTCATATTGACGCCTATAAAGCCCCTACGCCAGTAGTCGTCATTGAAGGTGATATTCGCGATATCGCCATTGAAAACGCATCGCTGGTGGTGCTg                                                                                                          >  1:1449354/1‑289 (MQ=255)
                                                                                                                                                                          cGTACCCGGCTATTCCAATATTATTTCCATGATTGGTATGTTAGCCGAGCGCTTCGTTCAACCTGGTACGCAGGTTTACGATCTGGGTTGTTCTCTGGGCGCGGCGACGCTCTCG‑GT‑GCGTCGCAACATTCATCATGATAATTGCAAAATTATTGCCATCGACAACTCCCCGGCGATGATTGAACGCTGCCGTCGTCATATTGACGCCTATAAAGCCCCTACGCCAGTAGACGTCATTGAAGGTGATATTCGCGATATCGCCATTGAAAACGCATCGATGGTGGTGCTg                                                                                                          >  1:1409818/1‑289 (MQ=255)
                                                                                                                                                                          cGTACCCGGCTATTCCAATATTATTTCCATGATTGGTATGTTAGCCGAGCGCTTCGTTCAACCTGGTACGCAGGTTTACGATCTGGGTTGTTCTCTGGGCGCGGCGACGCTCTCG‑GT‑GCGTCGCAACATTCATCATGATAATTGCAAAATTATTGCCATCGACAACTCCCCGGCGATGATTGAACGCTGCCGTCGTCATATTGACGCCTATAAAGCCCCTACGCCAGTAGACGTCATTGAAGGTGATATTCGCGATATCGCCATTGAAAACGCATCGATGGTGGTGCTg                                                                                                          >  2:1552276/1‑289 (MQ=255)
                                                                                                                                                                                 ggCTATTCCAATATTATTTCCATGATTGGTATGTTAGCCGAGCGCTTCGTTCAACCTGGTACGCAGGTTTACGATCTGGGTTGTTCTCTGGGCGCGGCGACGCTCTCG‑GT‑GCGTCGCAACATTCATCATGATAATTGCAAAATTATTGCCATCGACAACTCCCCGGCGATGATTGAACGCTGCCGTCGTCATATTGACGCCTATAAAGCCCCTACGCCAGTAAACGCCATTGAAGGTGATATTCGCGATATAGCCATTGAACACGCATCGATGGGTGTGCCGAAtttt                                                                                                    >  2:598839/1‑288 (MQ=255)
                                                                                                                                                                                        cccatatTATTTCCTTCGTTGGTATTTTGGCCGAGCGCTTCGTTAAACCTGGTACGCCGGTTTACGGTTTGGGTTGTTCTCTGGGCGCGGCGACGCTCTCG‑GT‑GCGTCGCAACATTCATCATGATAATTGCAAAATTATTGCCATCGACAACTCCCCGGCGATGATTGAACGCTGCCGTCGTCATATTGACGCCTATAAAGCCCCTACGCCAGTAGACGTCATTGAAGGTGATATTCGCGATATCGCCATTGAAAACGCATCGATGGTGGTGCTGAATTTTACCCTGCa                                                                                            <  2:712857/286‑1 (MQ=255)
                                                                                                                                                                                        ccAATATTATTTCCATGATTGGTATGTTAGCCGAGCGCTTCGTTCAACCTGGTACGCAGGTTTACGATCTGGGTTGTTCTCTGGGCGCGGCGACGCTCTCG‑GT‑GCGTCGCAACATTCATCATGATAATTGCAAAATTATTGCCATCGACAACTCCCCGGCGATGATTGAACGCTGCCGTCGTCATATTGACGCCTATAAAGCCCCTACGCCAGTAGACGTCATTGAAGGTGATATTCGCGATATCGCCATTGAAAACGCATCGATGGTGGTGCTGAATTTTACCCTGCa                                                                                            <  1:1304082/289‑1 (MQ=255)
                                                                                                                                                                                                attTCCATGATTGGTATGTTAGCCGAGCGCTTCGTTCAACCTGGTACGCAGGTTTACGATCTGGGTTGTTCTCTGGGCGCGGCGACGCTCTCG‑GT‑GCGTCGCAACATTCATCATGATAATTGCAAAATTATTGCCATCGACAACTCCCCGGCGATGATTGAACGCTGCCGTCGTCATATTGACg                                                                                                                                                                                             >  2:1873150/1‑184 (MQ=255)
                                                                                                                                                                                                attTCCATGATTGGTATGTTAGCCGAGCGCTTCGTTCAACCTGGTACGCAGGTTTACGATCTGGGTTGTTCTCTGGGCGCGGCGACGCTCTCG‑GT‑GCGTCGCAACATTCATCATGATAATTGCAAAATTATTGCCATCGACAACTCCCCGGCGATGATTGAACGCTGCCGTCGTCATATTGACGCCTATAAAGCCCCTACGCCAGTAGACGTCATTGAAGGTGATATTCGCGATATCg                                                                                                                                       >  2:376022/1‑238 (MQ=255)
                                                                                                                                                                                                   tCCATGATTGGTATGTTAGCCGAGCGCTTCGTTCAACCTGGTACGCAGGTTTACGATCTGGGTTGTTCTCTGGGCGCGGCGACGCTCTCG‑GT‑GCGTCGCAACATTCATCATGATAATTGCAAAATTATTGCCATCGACAACTCCCCGGCGATGATTGAACGCTGCCGTCGTCATATTGACGCCTATAAAGCCCCTACGCCAGTAGACGTCATTGAAGGTGATATTCGCGATATCGCCATTGAAAACGCATCGATGGTGGTGCTGAATTTTACCCTGCAATTCCTGGaa                                                                                  >  2:667480/1‑288 (MQ=255)
                                                                                                                                                                                                      aTGATTGGTATGTTAGCCGAGCGCTTCGTTCAACCTGGTACGCAGGTTTACGATCTGGGTTGTTCTCTGGGCGCGGCGACGCTCTCG‑GT‑GCGTCGCAACATTCATCATGATAATTGCAAAATTATTGCCATCGACAACTCCCCGGCGATGATTGAACGCTGCCgtcgtc                                                                                                                                                                                                      <  2:983273/169‑1 (MQ=255)
                                                                                                                                                                                                      aTGATTGGTATGTTAGCCGAGCGCTTCGTTCAACCTGGTACGCAGGTTTACGATCTGGGTTGTTCTCTGGGCGCGGCGACGCTCTCG‑GT‑GCGTCGCAACATTCATCATGATAATTGCAAAATTATTGCCATCGACAACTCCCCGGCGATGATTGAACGCTGCCgtcgtc                                                                                                                                                                                                      >  1:983273/1‑169 (MQ=255)
                                                                                                                                                                                                      aTGATTGGTATGTTAGCCGAGCGCTTCGTTCAACCTGGTACGCAGGTTTACGATCTGGGTTGTTCTCTGGGCGCGGCGACGCTCTCG‑GT‑GCGTCGCAACATTCATCATGATAATTGCAAAATTATTGCCATCGACAACTCCCCGGCGATGATTGAACGCTGCCGTCGTCATATTGACGCCTATAAAGCCCCTACGCCAGTAGACGTCATTGAAGGTGATATTCGCGATATCGCCATTGAAAACGCATCGATGGTGGTGCTGAATTTTACCCTGCAATTCCTGGAACCt                                                                               >  2:1168085/1‑288 (MQ=255)
                                                                                                                                                                                                        gATTGGTATGTTAGCCGAGCGCTTCGTTCAACCTGGTACGCAGGTTTACGATCTGGGTTGTTCTCTGGGCGCGGCGACGCCCTCG‑GT‑GCGTCGCAACATTCATCATGATAATTGCAAAATTATTGCCATCGACAACTCCCCGGCGATGATTGAACGCTGCCGTCGTCATATTGACGCCTATAAAGCCCCTACGCCAGTAGACGTCATTGAAGGTGATATTCGCGATATCGCCATTGAAAACGCATCGCTGGTGGTGCTGAATTTTACCCTGCAATTCCTGGAACCTTc                                                                             >  2:1637811/1‑288 (MQ=255)
                                                                                                                                                                                                               aTGTTAGCCGAGCGCTTCGTTCAACCTGGTACGCAGGTTTACGATCTGGGTTGTTCTCTGGGCGCGGCGACGCTCTCG‑GT‑GCGTCGCAACATTCATCATGATAATTGCAAAATTATTGCCATCGACAACTCCCCGGc                                                                                                                                                                                                                             <  2:1502434/137‑1 (MQ=255)
                                                                                                                                                                                                               aTGTTAGCCGAGCGCTTCGTTCAACCTGGTACGCAGGTTTACGATCTGGGTTGTTCTCTGGGCGCGGCGACGCTCTCG‑GT‑GCGTCGCAACATTCATCATGATAATTGCAAAATTATTGCCATCGACAACTCCCCGGc                                                                                                                                                                                                                             >  1:1502434/1‑137 (MQ=255)
                                                                                                                                                                                                               aTGTTAGCCGAGCGCTTCGTTCAACCTGGCACGCAGTTTTACGCTCTGGGTTGTTCTCTGGGCGCGGCGACGCTCTCG‑GT‑GCGTCGCAACATTCATCATGATAATTGCAAAATTATTGCCATCGACAACTCCCCGGCGATGATTGAACGCTGCCGTCGTCATATTGACGCCTATAAAGCCCCTACGCCAGTAGACGTCATTGAAGGTGATATTCGCGATATCGCCATTGAAAACGCATCGATGGTGGTGCTGAATTTTACCCTGCAATTCCTGGAACTTTCCGAgcgc                                                                      <  1:949325/288‑1 (MQ=255)
                                                                                                                                                                                                                    aGCCGAGCGCTTCGTTCAACCTGGTACGCAGGTTTACGATTTGGGTTGTTCTCTGGGCGCGGCGACGCTCTCG‑GT‑GCGTCGCAACATTCATCATGATAATTGCAAAATTATTGCCATCGACAACTCCCCGGCGATGATTGAACGCTGCCGTCGTCATATTGACGCCTATAAAGCCCCTACGCCAGTAGACGTCATTGAAGGTGATATTCGCGATATCGCCATTGAAAACGCATCGATGGTGGTGCTGAATTTTACCCTGCAATTCCTGGAACCTTCCGAGCGCCAGGCg                                                                >  2:1067742/1‑289 (MQ=255)
                                                                                                                                                                                                                      ccGAGCGCTTCGTTCAACCTGGTACGCAGGTTTACGATCTGGGTTGTTCTCTGGGCGCGGCGACGCTCTCG‑GT‑GCGTCGCAACATTCATCATGATAATTGCAAAATTATTGCCATCGACAACTCCCCGGCGATGATTGAACGCTGCCGTCGTCATATTGACGCCAATAAAGCCCCTACGCCAGTAGACGTCATTGCAGGTGATATTCACGATACCGCCATTGAAAACTCATCGCTGGTGGTGCTGAATTTTACCCTGAAATTCCTGGAACCTTCCGAGCGCCAGGCGtt                                                              >  2:1098333/1‑289 (MQ=255)
                                                                                                                                                                                                                       cgggcgcTTCGTTCAACCTGGTACGCAGGTTTACGCTCTGGGTTGGTCTCTGGGCGCGGCGACGCTCTCG‑GT‑GCGTCGCAACATTCATCATGATAATTGCAAAATTATTGCCATCGACAACTCCCCGGCGATGATTGAACGCTGCCGTCGTCATATTGACGCCTATAAAGCCCCTACGCCAGTAGACGTCATTGAAGGTGATATTCGCGATATCGCCATTGAAAACGCATCGATGGTGGTGCTGAATTTTACCCTGCAATTCCTGGAACCTTCCGAGCGCCAGGCGTTa                                                             <  1:1653661/286‑1 (MQ=255)
                                                                                                                                                                                                                       cGATCGCTTCGTTCAACCTGGTACGAAGGTTTACGATCTGGGTTGTTCTCTGGGCGCGGCGACGCTATCG‑GT‑GCGTCGCAACATTCATCATGATAATTGCAAAATTATTGCCATCGACAACTCCCCGGCGATGATTGAACGCTGCCGTCGTCATATTGACGCCTATAAAGCCCCTACGCCAGTAGACGTCATTGAAGGTGATATTCGCGATATCGCCATTGAAAACGCATCGATGGTGGTGCTGAATTTTACCCTGCAATTCCTGGAACCTTCCGAGCGCCAGGCGTTa                                                             <  1:306067/289‑1 (MQ=255)
                                                                                                                                                                                                                       cGAGCGCTTCGTTCACCCTGGTACGCAGGTTTACGATCTGGGTTGTTCTCTGGGCGCGGCGACGCTCTCG‑GT‑GCGTCGCAACATTCATCATGATAATTGCAAAATTATTGCCATCGACAACTCCCCGGCGATGATTGAACGCTGCCGTCGTCATATTGACGCCTATAAAGCCCCTACGCCAGTAGACGTCATTGAAGGTGATATTCGCGATATCGCCATTGAAAACGCATCGATGGTGGTGCTGAATTTTACCCTGCAATTCCTGGAACCTTCCGAGCGCCAGGCGTTa                                                             <  1:533472/289‑1 (MQ=255)
                                                                                                                                                                                                                        gAGCGCTTCGTTCAACCTGGTACGCAGGTTTACGATCTGGGTTGTTCTCTGGGCGCGGCGACGCTCTCG‑GT‑GCGTCGCACCATTCATCATGATAATTGCAAAACTATTGCCATCGACAACTCCCCGGCGATGATTGAACGCTGCCGTCGTCCTATTGCCGCCGATAAAGCCCCTACGCCAGTAGACGTCCTCGACGGTGATATTTCCGACATCGCCCTCGAAAACGCATCGATGGTGGTGCTGAATTGTACCCCGCAATTCCTAGAACCTCCCGATCGCAAGGTGtt                                                              >  2:366983/1‑287 (MQ=255)
                                                                                                                                                                                                                        gAGCGCTTCGTTCAACCTGGTACGCAGGTTTACGATCTGGGTTGTTCTCTGGGCGCGGCGACGCTCTCG‑GT‑GCGTCGCAACATTCATCATGATAATTGCAAAATTATTGCCATCGACAACTCCTCGGCGAGGAATAAACGCGGCCGTCGTCATATTGAAGCCTATAAAGCCTCTACGCCAGTAGACGTCATTGAAGGTGGTATTTGCGATATCGCCATCGATAACGCACCGATGGTGATGATGAATTTTACACTGCAATACCTGGAACCTTCCGAGCCCCATGCTTTa                                                             >  2:917825/1‑288 (MQ=255)
                                                                                                                                                                                                                        gAGCGCTTCGTTCAACCTGGTACGCAGGTTTACGATCTGGGTTGTTCTCTGGGCGCGGCGACGCTCTCG‑GT‑GCGTCGCAACATTCATCATGATAATTGCAAAATTATTGCCATCGACAACTCCCCGGCGATGATTGAACGCTGCCGTCGTCATATTGACGCCTATAAAGCCCCTACGCCAGTAGACGTCATTGAAGGTGATATTCGCGATATCGCCATTGAAAACGCATCGATGGTGGTGCTGAATTTTACCCTGCAATTCCTGGAACCTTCCGAGCGCCAGGCGtt                                                              >  2:60895/1‑287 (MQ=255)
                                                                                                                                                                                                                        gAGCGCTTCGTTCAACCTGGTACGCAGGTTTACGATCTGGGTTGTTCTCTGGGCGCGGCGACGCTCTCG‑GT‑GCGTCGCAACATTCATCATGATAATTGCAAAATTATTGCCATCGACAACTCCCCGGCGATGATTGAACGCTGCCGTCGTCATATTGACGCCTATAAAGCCCCTACGCCAGTAGACGTCATTGAAGGTGATATTCGCGATATCGCCATTGAAAACGCATCGATGGTGGTGCTGAATTTTACCCTGAAATTCCTGGAACCTTCCGAGCGCCAGGCGtt                                                              >  2:1888811/1‑287 (MQ=255)
                                                                                                                                                                                                                         aGCGCTTCGTTCAACCTGGTACGCAGGTTTACGATCTGGGTTGTTCTCTGGGCGCGGCGACGCTCTCG‑GT‑GCGTCGCAACATTCATCATGATAATTGCAAAATTATTGCCATCGACAACTCCCCGGCGATGATTGAACGCTGCCGTCGTCATATTGACGCCTATAAAGCCCCTACGCCAGTAGACGTCATTGAAGGTGATATTCGCGATATCGCCATTGAAAACGCATCGATGGTGGTGCTGAATTTTACCCTGCAATTCCTGGAACCTTCCGAGCGCCAGGCGtt                                                              >  1:1858459/1‑286 (MQ=255)
                                                                                                                                                                                                                            gcTTCGTTCAACCTGGTACGCAGGTTTACGATCTGGGTTGTTCTCTGGGCGCGGCGACGCTCTCG‑GT‑GCGTCGCAACATTCATCATGATAATTGCAAAATTATTGCCATCGACAACTCCCCGGCGATGATTGAACGCTGCCGTCGTCATATTGACGCCTATAAAGCCCCTACGCCAGTAGACGTCATTGAAGGTGATATTCGCGATATCGCCATTGAAAACGCATCGATGGTGGTGCTGAATTTTACCCTGCAATTCCTGGAACCTTCCGAGCGCCAGGCGTTACTGGa                                                        <  1:723115/289‑1 (MQ=255)
                                                                                                                                                                                                                            gcTTCGTCCACCCTGGTCGTCAGGTTTACGTTCTGGGATGTTCTCCGGGCGCGGCGACGCTCTCG‑GT‑GCGTCGCAACATTCATCATGATAATTGCAAAATTATTGCCATCGACAACTCCCCGGCGATGATTGAACGCTGCCGTCGTCATATTGACGCCTATAAAGCCCCTACGCCAGTAGACGTCATTGAAGGTGATATTCGCGATATCGCCATTGAAAACGCATCGATGGTGGTGCTGAATTTTACCCTGCAATTCCTGGAACCTTCCGAGCGCCAGGCGTTACTGGa                                                        <  2:1061804/289‑1 (MQ=255)
                                                                                                                                                                                                                                       ccTGGTACGCAGGTTTACGATCTGGGTTGTTCTCTGGGCGCGGCGACGCTCTCG‑GT‑GCGTCGCAACATTCATCATGATAATTGCAAAATTATTGCCATCGACAACTCCCCGGCGATGATTGAACGCTGCCGTCGTCATATTGACGCCTATAAAGCCCCTACGCCAGTAGACGTCATTGAATGTGATATTCGCGATATCGCCATTGAACACGCAATGAAGGTGGTGCTGAATTGTACCCTGGAATTCATGGAACCTTCCGACAGACAGGCGTTACTGGATAAAATTTaac                                             >  2:1695649/1‑287 (MQ=255)
                                                                                                                                                                                                                                          ggTACGCAGGTTTACGATCTGGGTTGTTCTCTGGGCGCGGCGACGCTCTCG‑GT‑GCGTCGCAACATTCATCATGATAATTGCAAATTTATTGCCATCGACAACTCCCCGGCGATGATTGAACGCTGCCGTCGTCATATTGACGACTATAAAGCCCCTACGCCAGTAGACGTCATTGAAGGTGATATTCGCGATATCGCCATTTAAAACGCATCGATGGTGGTGCTGAATTTTACCCTGCAATTCCTGTAACCTTCCGACCGCCACGAGTTACGGGACAAAATTTATCAAg                                          >  2:186229/1‑289 (MQ=255)
                                                                                                                                                                                                                                          ggTACGCAGGTTTACGATCTGGGTTGTTCTCTGGGCGCGGCGACGCTCTCG‑GT‑GCGTCGCAACATTCATCATGATAATTGCAAAATTATTGCCATCGACAACTCCCCGGCGATGATTGAACGCTGCCGTCGTCATATTGACGCCTATAAAGCCCCTACGCCAGTAGACCTCATTGAAGGTGATATTCGCGATATCGCCATTTAACACGCATCGAAGGCGGGGCTTAATTTTACCTCGGAATTCCTTGACCCTTCCGAGCACTCAGCGTTCATGGATAAAATCTAtaatg                                          >  2:312602/1‑285 (MQ=255)
                                                                                                                                                                                                                                            tACGCAGGTTTACGATCTGGGTTGTTCTCTGGGCGCGGCGACGCTCTCG‑GT‑GCGTCGCAACATTCATCATGATAATTGCAAAATTATTGCCATCGACAACTCCCCGGCGATGATTGAACGCTGCCGTCGTCATATTGACGCCTATAAAGCCCCTACGCCAGTAGACGTCATTGAAGGTGATATTCGCGATATCGCCATTGAAAACGCATCGATGGTGGTGCTGAATTTTACCCTGCAATTCCTGGAACCTTCCGAGCGCCAGGCGTTACTGGATAAAATTTATCAAgg                                         >  2:324423/1‑288 (MQ=255)
                                                                                                                                                                                                                                            tACGCAGGTTTACGATCTGGGTTGTTCTCTGGGCGCGGCGACGCTCTCG‑GT‑GCGTCGCAACATTCATCATGATAATTGCAAAATTATTGCCATCGACAACTCCCCGGCGATGATTGAACGCTGCCGTCGTCATATTGACGCCTATAAAGCCCCTACGCCAGTAGACGTCATTGAAGGTGATATTCGCGATATCGCCATTGAAAACGCATCGATGGTGGTGCTGAATTTTACCCTGCAATTCCTGGAACCTTCCGAGCGCCAGGCGTTACTGGATAAAATTTATCAAgg                                         >  1:674071/1‑288 (MQ=255)
                                                                                                                                                                                                                                            tACGCAGGTTTACGATCTGGGTTGTTCTCTGGGCGCGGCGACGCTCTCG‑GT‑GCGTCGCAACATTCATCATGATAATTGCAAAATTATTGCCATCGACAACTCCCCGGCGATGATTGAACGCTGCCGTCGTCATATTGACGCCTATAAAGCCCCTACGCCAGTAGACGTCATTGAAGGTGATATTCGCGATATCGCCATTGAAAACGCATCGATGGTGGTGCTGAATTTTACCCTGCAATTCCTGGAACCTTCCGAGCGCCAGGCGTTACTGGATAAAATTTATCAAgg                                         >  1:1788957/1‑288 (MQ=255)
                                                                                                                                                                                                                                                 aGGTTTACGATCTGGGTTGTTCTCTGGGCGCGGCGACGCTCTCG‑GT‑GCGTCGCAACATTCATCATGATAATTGCAAAATTATTGCCATCGACAACTCCCCGGCGATGATTGAACGCTGCCGTCGTCATATTGACGCCTATAAAGCCCCTACGCCAGTAGACGTCATTGAAGGTGATATTCGCGATATCGCCATTGAAAACGCATCGATGGTGGTGCTGAATTTTACCCTGCAATTCCTGGAACCTTCCGAGCGCCAGGCGTTACTGGATAAAATTTATCAAGGGCTGa                                    >  1:1325112/1‑288 (MQ=255)
                                                                                                                                                                                                                                                         gATCTGGTTTGTACTCGGGACGCGGCTACACTCTCG‑GT‑GCGTCGCAACATTCATCATGATAATTGCAAAATTATTGCCATCGACAACTCCCCGGCGATGATTGAACGCTGCCGTCGTCATATTGACGCCTATAAAGCCCCTACGCCAGTAGACGTCATTGAAGGTGATATTCGCGATATCGCCATTGAAAACGCATCGATGGTGGTGCTGAATTTTACCCTGCAATTCCTGGAACCTTCCGAGCGCCAGGCGTTACTGGATAAAATTTATCAAGGGCTGAACCCcggcg                           <  1:1144936/289‑1 (MQ=255)
                                                                                                                                                                                                                                                         gATCTGGGTTTTTCTCTGGGCGCGGCGACGCTCTCG‑GT‑GCGTCGCAACATTCATCATGATAATTGCAAAATTATTGCCATCGACAACTCCCCGGCGATGATTGAACGCTGCCGTCGTCATATTGACGCCTATAAAGCCCCTACGCCAGTAGACGTCATTGAAGGTGATATTCGCGATATCGCCATTGAAAACGCATCGATGGTGGTGCTGAATTTTACCCTGCAATTCCTGGAACCTTCCGAGCGCCAGGCGTTACTGGATAAAATTTATCAAGGGCTGAACCCcggcg                           <  1:1642588/289‑1 (MQ=255)
                                                                                                                                                                                                                                                             tGGGTTGTTCTCTGGGCGCGGCGACGCTCTCG‑GT‑GCGTCGCAACATTCATCATGATAATTGCAAAATTATTGCCATCGACAACTCCCCGGCGATGATTGAACGCTGCCGTCGTCATATTGACGCCTATAAAGCCCCTACGCCAGTAGACGTCATTGAAGGTGATATTCGCGATATCGCCATTGAAAACGCATCGATGGTGGTGCTGAATTTTACCCTGCAATTCCTGGAACCTTCCGAGCGCCAGGCGTTACTGGATAAAATTTATCAAGGGCTGAACCCCGGCGgcgc                       >  2:1548780/1‑289 (MQ=255)
                                                                                                                                                                                                                                                             tGGGTTGTTCTCTGGGCGCGGCGACGCTCTCG‑GT‑GCGTCGCAACATTCATCATGATAATTGCAAAATTATTGCCATCGACAACTCCCCGGCGATGATTGAACGCTGCCGTCGTCATATTGACGCCTATAAAGCCCCTACGCCAGTAGACGTCATTGAAGGTGATATTCGCGATATCGCCATTGAAAACACATCGATGGTGGTGCTGAATTTTACCCTGCAATTCCTGGAACCTTCCGAGCGCCAGGCGTTACTGGATAAAATTTATCa                                            >  1:418723/1‑268 (MQ=255)
                                                                                                                                                                                                                                                             tGGGTTGTTCTCTGGGCGCGGCGACGCTCTCG‑GT‑GCGTCGCAACATTCATCATGATAATTGCAAAATTATTGCCATCGACAACTCCCCGGCGATGATTGAAAGCTGCCGTCGTCATATTGACGCCTATAAAGCCCCTACGCCAGTAGACGTCATTGAAGGTGATATTCGCGATATCGCCATTGAAAACGCATCGATGGTGGTGCTGAATTTTACCCTGCCATTTCTTGACACTTCCGAGCGCCCGGCGTTAACGGGGAAAATTTATAAAGGGCTGAACCCcgcgggggg                       >  2:101118/1‑282 (MQ=255)
                                                                                                                                                                                                                                                             tGGGTTGTTCTCTGGGCGCGGCGACGCTCTCG‑GT‑GCGTCGCAACATTCATCATGATAATTGCAAAATTATTGCCATCGACAACTCCACGGCGATGATTGAAAGCTGCCGTCAACATATTGACGCCTATAAAGCCCCTACGCCAGTAGACGTCATCGAAGCTGATATTCGCGATAACGCCATTGAAAAAGTATCGATGATCGTGCTGAATTTTACCCAGCAATTCCTTGAACCTTCCGCGCTCAAGGGGTTACTGGAGAAAATTTATCAATGCCTGCACCCCggccgcc                        >  2:1279013/1‑287 (MQ=255)
                                                                                                                                                                                                                                                             cggggtgtgggggtggcgcggcgcCGCT‑ATC‑GTGGCGACACAACATTGTGTAGGATAATTGGCAAAGGATTGCCATAGACGAGACAACGGCGATGAGTGGAGGCTTCCGTCGTCAGATTGACGCCTAGCAAGCCCCTACGCCAGGAGACGTCAGTGAAGGGGAGAGTCGCGATATCGACATTGAAAACGCATCGATGGTGGTGCTGAATTTTACCCTGCAATGCCTGGAACCTTCCGAGCGCCAGGCGTTACTGGATAAAATTTATCAAGGGCTGAACCCCGgcggcg                        <  2:1044377/274‑1 (MQ=255)
                                                                                                                                                                                                                                                                         tGGGCGCGGCGACGCTCTCG‑GT‑GCGTGGCAACAGTCATCATGATAATTGCACAATTATTGCCATCGACAACTCCCCGGCGATGATTGAACGCTGCCGTCGTCATATTGACGCCTATAACGCCCCTACGCCAGTAGACGTCATTGAAGGTGATATTCGCGATATCGCCATTGAAAACGCATCGATGGTGGTGCTGAAGTTTATCCTGCAATTTCTGGAACATTCCGGTCGCCACGCGTATCGGGATAAAAGTTATCAAGGGCCGAACCCCGGCTGCGCGCTGGTGcgtga           >  2:235025/1‑285 (MQ=255)
                                                                                                                                                                                                                                                                         tGGGCGCGGCGACGCTCTCG‑GT‑GCGTCGCAACATTCATCATGATAATTGCAAAATTATTGCCATCGACAACTCCCCGGCGATGATTGAACGCTGCCGTCGTCATATTGACGCCTATAAAGCCCCTACGCCAGTAGACGTCATTGAAGGTGATATTCGCGATATCGCCATTGAAAACGCATCGATGGTGGTGCTGAATTTTACCCTGCAATTCCTGGAACCTTCCGAGCGCCAGGCGTTACTGGATAAAATTTATCAAGGGCTGAACCCCGGCGGCGCGCTGGTGCtttc           >  1:1258071/1‑287 (MQ=255)
                                                                                                                                                                                                                                                                           ggCGCGGCGACGCTCTCG‑GT‑GCGTCGCAACATTCATCATGATAATTGCAAAATTATTGCCATCGACAACTCCCCGGCGATGATTGAACGCTGCCGTCGTCATATTGACGCCTATAAAGCCCCTACGCCAGTAGACGTCATTGAAGGTGATATTCGCGATATCGCCATTGAAAACGCATCGATGGTGGTGCTGAATTTTACCCTGCAATTCCTGGAACCTTCCGAGCGCCAGGCGTTACTGGa                                                        >  2:497146/1‑242 (MQ=255)
                                                                                                                                                                                                                                                                           ggCGCGGCGACGCTCTCG‑GT‑GCGTCGCAACATTCATCATGATAATTGCAAAATTATTGCCATCGACAACTCCCCGGCGATGATTGAACGCTGCCGTCGTCATATTGACGCCTATAAAGCCCCTACGCCAGTAGACGTCATTGAAGGTGATATTCGCGATATCGCCATTGAAAACGCATCGATGGTGGTGCTGAATTTTACCCTGCAATTCCTGGAACCTTCCGAGCGCCAGGCGTTACTGGa                                                        <  1:497146/242‑1 (MQ=255)
                                                                                                                                                                                                                                                                           ggCGCGGCGACGCTCTCG‑GT‑GCGTCGCAACATTCATCATGATAATTGCAAAATTATTGCCATCGACAACTCCCCGGCGATGATTGAACGCTGCCGTCGTCATATTGACGCCTATAAAGCCCCTACGCCAGTAGACGTCATTGAAGGTGATATTCGCGATATCGCCATTGAAAACGCATCGATGGTGGTGCTGAATTTTACCCTGCAATTCCTGGAACCTTCCGACCGCCAGGCGTTACTGGATAAAATGTATAAAGGGCTGAACCCCGGCGGCGGGTGGGTGCttgcgg         >  2:1609226/1‑285 (MQ=255)
                                                                                                                                                                                                                                                                                ggcgACGCTCTCG‑GT‑GCGTCGCAACATTCATCATGATAATTGCAAAATTATTGCCATCGACAACTCCCCGGCGATGATTGAACGCTGCCGTCGTCATATTGACGCCTATAAAGCCCCTACGCCAGTAGACGTCATTGAAGGTGATATTCGCGATATCGCCATTGAAAACGCATCGATGGTGGTGCTGAATTTTACCCTGCAATTCCTGGAACCTTCCGAGCGCCAGGCGTTACTGGATAAAATTTATCAAGGGCTGAACCCCGGCGGCGCGCTGGTGCTTTCGGaaaaa    <  1:1067742/289‑1 (MQ=255)
                                                                                                                                                                                                                                                                                          |||                                                                                                                                                                                                                                                                                        
GGGAGTTGGTTTTCTCCCTGCGTTAACGCACAATACGCCACTTTCTTTTTCCCGGATTTTTACGTTATGTCTCACCGCGACACGCTATTTTCTGCCCCTATCGCCAGACTGGGCGACTGGACCTTTGATGAACGGGTAGCTGAAGTCTTCCCGGATATGATCCAGCGTTCCGTACCCGGCTATTCCAATATTATTTCCATGATTGGTATGTTAGCCGAGCGCTTCGTTCAACCTGGTACGCAGGTTTACGATCTGGGTTGTTCTCTGGGCGCGGCGACGCTCAGC‑GT‑GCGTCGCAACATTCATCATGATAATTGCAAAATTATTGCCATCGACAACTCCCCGGCGATGATTGAACGCTGCCGTCGTCATATTGACGCCTATAAAGCCCCTACGCCAGTAGACGTCATTGAAGGTGATATTCGCGATATCGCCATTGAAAACGCAAGCATGGTGGTGCTGAATTTTACCCTGCAATTCCTGGAACCTTCCGAGCGCCAGGCGTTACTGGATAAAATTTATCAAGGGCTGAACCCCGGCGGCGCGCTGGTGCTTAGCGAAAAATT  >  CP042583/1633384‑1633946

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A