Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A2 F210 I1 R1	4928	368.7	6392010	97.5%	6232209	231.9

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	CP042583	1,551,134	3 bp→TCG	intergenic (–/–)	– / –	–/–

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP042583	1,551,134	0	A	T	99.4%	777.8 / NA	328	intergenic (–/–)	–/–	–/–
Reads supporting (aligned to +/- strand): ref base A (0/0); major base T (164/161); minor base C (2/0); total (167/161)
Fisher's exact test for biased strand distribution p-value = 4.99e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.98e-01
*	CP042583	1,551,135	0	G	C	99.7%	774.1 / NA	328	intergenic (–/–)	–/–	–/–
Reads supporting (aligned to +/- strand): ref base G (1/0); new base C (164/161); total (167/161)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.97e-01
*	CP042583	1,551,136	0	C	G	99.7%	775.1 / ‑5.4	328	intergenic (–/–)	–/–	–/–
Reads supporting (aligned to +/- strand): ref base C (0/0); major base G (166/161); minor base . (1/0); total (167/161)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 328 total aligned reads displayed.

TTTACTGTGCGAATGGTATTTGCGCGTACGTAAAAGCTCTTAACAACCCTGGCCCGGTACACATGTTACCGGGCCTACAACGACAGCGAACCGTGGGCCTGAGAAGCGGCAACACAGGCGTAGCATACAGTTGGCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGCGTTTTTTACGCCGTTATAAAGCGCAAATTAAACAGAGCATCTCCGAGGCCATTAATAAGC‑GTAGCGTGACTGACGTCGACA‑GCGGCGAATCCGTATCCATTCCCACGGAAGATATTAGCGAACCGATGTTTCATCAGGGGCGTGGCGGTCTGCGCCACCGCGTGCATCCGGGCAATGACCATTTCGTCCAGAACGACCGAATTGAACGTCCCCAGGGTGGCGGCGGAGGTTCCGGCAGTGGTCAGGGCCAGGCCAGCCAGGATGGTGAAGGTCAGGATGAATTTGTCTTTCAGATTAGCAAAGATGAGTATCTTGATCTGCTCTTTGAAGATTTGGCCTTACC  >  CP042583/1550856‑1551414

|||

          gAATGGTATTTGCGCGTACGTAAATCGTCTTAACAACCCTGGCCCGGTACACATGTTACCGGGCCTACAACGACAGCGAACCGTGGGCCTGAGAAGCGGCAACACAGGCGTAGCATACAGTTGGCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGCGTTTTTTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGC‑GTTCGGTGACTGACGTCGACA‑gc                                                                                                                                                                                                                                                                      >  2:2460303/1‑289 (MQ=255)

                          tacgtaAATCGTCTTAACAACCCTGGGCCGGTACACATGTTACCGGGCCTACAACGACAGCGAACCGTGGGCCTGAGACGCGGCAAGACAGGCGTAGCATACAGTTGGTAACTGTAGTACGGGGGGCATATGACATGGTTTATTGACCGGCTTATGAACGGCAAAAACAAAAGCATGGTGAATTGCCAGCGTTTTTTACGCCGCTATAAAGCGCAAATTAAACAGACACTCTCCGAGGCAATTACTAAACTGTCG‑GTGACTGTCGTC‑ACATGCGGCGAACACGTTTCCa                                                                                                                                                                                                                                                      >  2:2109718/1‑289 (MQ=255)

                            cgtaaatcgtctTAACAACCCTGGCCCGGTACACATGTTACCGGGCCTACAACGACAGCGAACCGTGGGCCTGAGAAGCGGCAACACAGGCGTAGCATACAGTTGGCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGCGTTTTTTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGC‑GTTCGGtgactgac                                                                                                                                                                                                                                                                                >  1:1840816/10‑262 (MQ=255)

                               aaatcgactTAACAACCCTGGCCCGGTACACATGTTACCGGGCCTACAACGACAGCGAACCGTGGGCCTGAGAAGCGGCAACACAGGCGTAGCATACAGTTGGCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGCGTTTTTTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGC‑GTTCGGTGACTGACGTCGACA‑GCGGCGAATCCGTATCCATTcc                                                                                                                                                                                                                                                  <  1:2948387/281‑1 (MQ=255)

                                  tcgcctTAACAACCCTGGCCCGGTCAACATGTTACCGGGCCTACAACGACAGGGAACCGTGGGCCTGAGAAGCGGCAACACAGGCGTAGCATACAGTTGGCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGCGTTTTTTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGC‑GTTCGGTGACTGACGTCGACA‑GCGGCGAATCCGTATCCATTCCCACg                                                                                                                                                                                                                                              <  2:3132955/285‑1 (MQ=255)

                                     tctTAACAACCCTGGCCCGGTACACATGTTACCGGGCCTACAACGACAGCGAACCGTGGGCCTGAGAAGCGGCAACACAGGCGTAGCATACAGTTGGCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGCGTTTTTTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGC‑GTTCGGTGACTGACGTCGACA‑GCGCCGAATCCGTAACCATTCCCACCGac                                                                                                                                                                                                                                           >  2:3030880/1‑288 (MQ=255)

                                      ctTAACAACCCTGGCCCGGTACACATGTTACCGGGCCTACAACGACAGCGAACCGTGGGCCTGAGAAGCGGCAACACAGGCGTAGCATACAGTTGGCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGCGTTTTTTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGC‑GTTCGGTGACTGACGTCGACA‑GCGGCGACTCCGTATCCATTCCCACGGAAg                                                                                                                                                                                                                                          >  1:751789/1‑289 (MQ=255)

                                             acCCTGGCCCGGTACACATGTTACCGGGCCTACAACGACAGCGAACCGTGGGCCTGAGAAGCGGCAACACAGGCGTAGCATACAGTTGGCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGCGTTTTTTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGC‑GTTCGGTGACTGACGTCGACA‑GCGGCGAATCCGTATCCATTCCCACGGAAGATATTAg                                                                                                                                                                                                                                   <  2:481710/289‑1 (MQ=255)

                                               ccTGGCCCGGTACACATGTTACCGGGCCTACAACGACAGCGAACCGTGGGCCTGAGAAGCGGCAACACAGGCGTAGCATACAGTTGGCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGCGTTTTTTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGC‑GTTCGGTGACTGACGTCGACA‑gcggcg                                                                                                                                                                                                                                                                  >  2:946231/1‑256 (MQ=255)

                                               ccTGGCCCGGTACACATGTTACCGGGCCTACAACGACAGCGAACCGTGGGCCTGAGAAGCGGCAACACAGGCGTAGCATACAGTTGGCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGCGTTTTTTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGC‑GTTCGGTGACTGACGTCGACA‑GCGGCGAATCCGTATCCATTCCCACGGAAGATATTAGCg                                                                                                                                                                                                                                 <  1:118012/289‑1 (MQ=255)

                                                     ccGGAAAACATGTTACCGGGCCTACAACGACAGCGAACCGTGGGCCTGGGAAGCGGCAACACAGGCGTAGCATACAGTTGGCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGCGTTTTTTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGC‑GTTCGGTGACTGACGTCGACA‑GCGGCGAATCCGTATCCATTCCCACGGAAGATATTAGCGAACCg                                                                                                                                                                                                                            <  1:1025282/288‑1 (MQ=255)

                                                        gTACACATGTTACCGGGCCTACAACGACAGCGAACCGTTGGCCTGAGAAGCGGCAACACAGGCGTAGCATACAGTTGGCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGTCCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGCGTTTTTTACGCCGTTAGAAAGCGCAAATTAAACAGTCGAACTCCGAGGCCATTAATAAGA‑GTTCGGGGACCGACGTCGAAA‑GCAGCGAATCAGTATCCATTCCCACGGAAGATATTCGCGAACCGATGt                                                                                                                                                                                                                        >  2:2759601/1‑289 (MQ=255)

                                                        gTACACATGTTACCGGGCCTACAACGACAGCGAACCGTGGGCCTGAGAAGCGGCAACACAGGCGTAGCATACAGTTGGCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGCGTTTTTTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGC‑GTTCGGTGACTGACGTCGACA‑GCGGCGAATCCGTATCCATTCCCACGGAAGATATTAGCGAAcc                                                                                                                                                                                                                             >  2:1526930/1‑284 (MQ=255)

                                                        gTACACATGTTACCGGGCCTACAACGACAGCGAACCGTGGGCCTGAGAAGCGGCAACACAGGCGTAGCATACAGTTGGCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGCGTTTTTTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGC‑GTTCGGTGACTGACGTCGACA‑GCGGCGAATCCGTATCCATTCCCACGGAAGATATTAGCGAAcc                                                                                                                                                                                                                             <  1:1526930/284‑1 (MQ=255)

                                                        gTACACATGTTACCGGGCCTACAACGACAGCGAACCGTGGGCCTGAGAAGCGGCAACACAGGCGTAGCATACAGTTGGCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGCGTTTTTTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGC‑GTTCGGTGACTGACGTCGACA‑GCGGCGAATCCGTATCCATTCCCACGGAAGATATTAGCGAACCGATGt                                                                                                                                                                                                                        >  2:531920/1‑289 (MQ=255)

                                                        gTACACATGTTACCGGGCCTACAACGACAGCGAACCGTGGGCCTGAGAAGCGGCAACACAGGCGTAGCATACAGTTGGCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGCGTTTTTTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGC‑GTTCGGTGACTGACGTCGACA‑GCGGCGAATCCGTATCCATTCCCACGGAAGATATTAGCGAACCGACGt                                                                                                                                                                                                                        >  1:398737/1‑289 (MQ=255)

                                                                   aCCGGGCCTACAACGACAGCGAACCGTGGGCCTGAGAAGCGGCAACACAGGCGTAGCATACAGTTGGCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGCGTTTTTTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGC‑GTTCGGTGACTGACGTCGACA‑GCGGCGAATCCGTATCCATTCCCACGGAAGATATTAGCGAACCGATGTTTCATCAgggg                                                                                                                                                                                                             >  1:1315535/1‑289 (MQ=255)

                                                                   aCCGGGCCTACAACGACAGCGAACCGTGGGCCTGAGAAGCGGCAACACAGGCGTAGCATACAGTTGGCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGCGTTTTTTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGC‑GTTCGGTGACTGACGTCGACA‑GCGGCGAATCCGTATCCATTCCCACGGAAGATATTAGCGAACCGATGTTTCATCAgggg                                                                                                                                                                                                             >  1:2765717/1‑289 (MQ=255)

                                                                   aCCGGGCCTACAACGACAGCGAACCGTGGGCCTGAGAAGCGGCAACACAGGCGTAGCATACAGTTGGCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGCGTTTTTTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGC‑GTTCGGTGACTGACGTCGACA‑GCGGCGAATCCGTATCCATTCCCACGGAAGATATTAGCGAACCGATGTTTCATCAggg                                                                                                                                                                                                              >  1:358083/1‑288 (MQ=255)

                                                                   aCCGGGCCTACAACGACAGCGAACCGTGGGCCTGAGAAGCGGCAACACAGGCGTAGCATACAGTTGGCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGCGTTTTTTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGC‑GTTCGGTGACTGACGTCGACA‑GCGGCGAATCCGTATCCATTCCCACGGAAGATATTAGCGAACCGATGTTTCATCAggg                                                                                                                                                                                                              >  1:804035/1‑288 (MQ=255)

                                                                   aCCGGGCCTACAACGACAGCGAACCGTGGGCCTGAGAAGCGGCAACACAGGCGTAGCATACAGTTGGCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGCGTTTTTTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGC‑GTTCGGTGACTGACGTCGACA‑GCGGCGAATCCGTATCCATTCCCACGGAAGATATTAGCGAACCGATGTTTCATCAggg                                                                                                                                                                                                              >  1:947718/1‑288 (MQ=255)

                                                                   aCCGGGCCTACAACGACAGCGAACCGTGGGCCTGAGAAGCGGCAACACAGGCGTAGCATACAGTTGGCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCAAGCGTTTTTTACGCCGTTATAAAGCGCAAATCAAACAGTCGATCTCCGAGGCCATTAATAAGC‑GTTCGGTGACTGACGTCGACA‑GCGGCGAATCCGTATCCATTCCCACGGAAGACATTAGCGAACCGATGTTTCATCAggt                                                                                                                                                                                                              >  1:2665730/1‑287 (MQ=255)

                                                                       ggCCTACAACGACAGCGAACCGTGGGCCTGAGAAGCGGCAACACAGGCGTAGCATACAGTTGGCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGCGTTTTTTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGC‑GTTCGGTGACTGACGTCGACA‑GCGGCGAATCCGTATCCATTCCCACGGAAGATATTAGCGAACCGATGTTTCATCAGGGGCGTg                                                                                                                                                                                                         >  1:2446024/1‑289 (MQ=255)

                                                                       ggCCTACAACGACAGCGAACCGTGGGCCTGAGAAGCGGCAACACAGGCGTAGCATACAGTTGGCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGCGTTTTTTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGC‑GTTCGGTGACTGACGTCGACA‑GCGGCGAATCCGTATCCATTCCCACGGAAGATATTAGCGAACCGATGTTTCATCAGGGGCGTg                                                                                                                                                                                                         >  2:349758/1‑289 (MQ=255)

                                                                       ggCCTACAACGACAGCGAACCGTGGGCCTGAGAAGCGGCAACACAGGCGTAGCATACAGTTGGCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGCGTTTTTTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGC‑GTTCGGTGACTGACGTCGACA‑GCGGCGAATCCGTATCCATTCCCACGGAAGATATTAGCGAACCGATGTTTCATCAGGGGCGTg                                                                                                                                                                                                         >  1:1239285/1‑289 (MQ=255)

                                                                        gCCTACAACGACAGCGAACCGTGGGCCTGAGAAGCGGCAACACAGGCGTAGCATACAGTTGGCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGCGTTTTTTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGC‑GTTCGGTGACTGACGTCGACA‑GCGGCGa                                                                                                                                                                                                                                                                 <  2:606598/232‑1 (MQ=255)

                                                                         ccTACAACGACAGCGAACCGTGGGCCTGAGAAGCGGCAACACAGGCGTAGCATACAGTTGGCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGCGTTTTTTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGC‑GTTCGGTGACTGACGTCGACA‑GCGGCGAATCCGTATCCATTCCCACGGAAGATATTAGCGAACCGATGTTtcatc                                                                                                                                                                                                                  >  1:2518086/1‑278 (MQ=255)

                                                                              aaCGACAGCGAACCGTGGGCCTGAGAAGCGGCAACACAGGCGTAGCATACAGTTGGCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGCGTTTTTTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGC‑GTTCGGTGACTGACGTCGACA‑GCGGCGAATCCGTATCCATTCCCACGGAAGATATTAGCGAACCGATGTTTCATCAGGGGCGTGGCGGTCt                                                                                                                                                                                                  <  1:990614/289‑1 (MQ=255)

                                                                                  aCAGCGAACCGTGGGCCTGAGAAGCGGCAACACAGGCGTAGCATACAGTTGGCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGCGTTTTTTGCGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGC‑GTTCGGTGACTGACGTCGACA‑GCGGCGAATCCGTATCCATTCCCACGGAAGATATTAGCGAACCGATGTTTCATCAGGGGCGGGGCGGTCTgcg                                                                                                                                                                                               >  1:79593/1‑288 (MQ=255)

                                                                                   cAGCGAACCGTGGGCCTGAGAAGCGGCAACACAGGCGTAGCATACAGTTGGCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGCGTTTTTTACGCCGTTATAAAGCGTAAATTAAACAGTCGATCTCCGATGCCATTAATAAGC‑GTTCGGTGACTGACGTCGACA‑GCGGCGAATCCGTATCCATTCCCACGGAAGGTATTAGCGAACCGATGTTTCATCCGGGGCGAGGCGGTCTgcgc                                                                                                                                                                                              >  2:2181545/1‑288 (MQ=255)

                                                                                    aGCGAGCCGTGGGCCAGAGAAGGGGCAACACAGACGTAGCATACAGTTGGCAAATGCAGTACGGGAGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGCGTTTTTTACGCCGTTATAAATCGCAAATTAGACAGTCGATCTCCGAGGCCATTAATAAGC‑GTTCGGTGACTGACGTCGACA‑GCGGCGAATCCGTATCCATTCCCACGGAAGATATTAGCGAACCGATGTTTCATCAGGGGCGTGGCGGTCTGCGCCa                                                                                                                                                                                            <  2:751789/289‑1 (MQ=255)

                                                                                    aGCGAACCGTGGGCCTGAGAAGCGGCAACACAGGCGTAGCATACAGTTGGCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGCGTTTTTTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGC‑GTTCGGTGACTGACGTCGACA‑GCGGCGAATCCGTATCCATTCCCACGGAAGATATTAGCGAACCGATGTTTCATCAGGGGCGTGGCGGTCTGCGCCa                                                                                                                                                                                            <  2:1309807/289‑1 (MQ=255)

                                                                                                  cTGAGAAGCGGCAACACAGGCGTAGCATACAGTTGGCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGCGTTTTTTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGC‑GTTCGGTGACTGACGTCGACA‑GCGGCGAATCCGTATCCATTCCCACGGAAGATATTAGCGAACCGATGTTTCATCAGGGGCGTGGCGGt                                                                                                                                                                                                    >  1:1909022/1‑267 (MQ=255)

                                                                                                    gagaAGCGGCAACACAGGCGTAGCATACAGTTGGCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGCGTTTTTTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGC‑GTTCGGTGACTGACGTCGACA‑GCGGCGAATCCGTATCCATTCCCACGGAAGATATTAGCGAACCGATGTTTCATCAGGGGCGTGGCGGTCTGCGCCACCGCGTGCATCCGGGc                                                                                                                                                                            <  1:2181545/289‑1 (MQ=255)

                                                                                                          cGGCAACACAGGCGTAGCATACAGTTGGCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGCGTTTTTTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGC‑GTTCGGTGACTGACGTCGACA‑gcggcg                                                                                                                                                                                                                                                                  >  1:523396/1‑197 (MQ=255)

                                                                                                                         aGCATACAGTTGGCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGCGTTTTTTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGC‑GTTCGGTGACTGACGTCGACA‑GCGGCGAATCCGTATCCATTCCCACGGAAGATATTAGCGAACCGATGTTTCATCAGGGGCGTGGCGGTCTGCGCCACCGCGTGCATCCGGGCAATGACCATTTCGTCCAGaa                                                                                                                                                        <  1:3174275/288‑1 (MQ=255)

                                                                                                                          gCATACAGTTGGCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGCGTTTTTTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGC‑GTTCGGTGACTGACGTCGACA‑GCGGCGAATCCGTATCCATTCCCACGGAAGATATTAGCGAACCGATGTTTCATCAGGGGCGTGGCGGTCTgcg                                                                                                                                                                                               >  1:683832/1‑248 (MQ=255)

                                                                                                                          gCATACAGTTGGCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGCGTTTTTTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGC‑GTTCGGTGACTGACGTCGACA‑GCGGCGAATCCGTATCCATTCCCACGGAAGATATTAGCGAACCGATGTTTCATCAGGGGCGTGGCGGTCTGCGCCACCGCGTGCATCCGGGCAATGACCATTTCGTCCAGAACg                                                                                                                                                      >  1:1585663/1‑289 (MQ=255)

                                                                                                                            aTACAGTTGGCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGCGTTTTTTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGC‑GTTCGGTGACTGACGTCGACA‑GCGGCGAATCCGTATCCATTCCCACGGAAGATATTAGCGAACCGATGTTTCATCAGGGGCGTGGCGGTCTGCGCCACCGCGTGCATCCGGGCAATGACCATTTCGTCCAGAACGAc                                                                                                                                                    <  1:3041923/289‑1 (MQ=255)

                                                                                                                            aTACAGTTGGCAAATGTAGTACGGGGGGCATATGACCTGGTTTAGTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATAGCCAGCGTTTTTTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGC‑GTTCGGAGACTGACGTCGACA‑GCGGCGAATCCGTATCCATTCCCACGGAAGATATTAGCGAACCGATGTTTCATCAGGGGCGTGGCGGTCTGCGCCACCGCGTGCATCCGGGCAATGACCATTTCGTCCAGAACGa                                                                                                                                                     <  1:3155663/288‑1 (MQ=255)

                                                                                                                            aTACAGTTGGCAAATGTAGTAC‑GGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGCGTTTTTTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGC‑GTTCGGTGACTGACGTCGACA‑GCGGCGAATCCGTATCCATTCCCACGGAAGATATTAGCGAACCGATGTTTCATCAGGGGCGTGGCGGTCTGCGCCACCGCGTGCATCCGGGCAATGACCATTTCGTCCAGAACGa                                                                                                                                                     <  1:2887854/287‑1 (MQ=255)

                                                                                                                             tACAGTTGGCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGCGTTTTTTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGC‑GTTCGGTGACTGACGTCGACA‑GCGGCGAATCCGTATCCATTCCCACGGAAGATATTAGc                                                                                                                                                                                                                                  <  2:2371024/210‑1 (MQ=255)

                                                                                                                             tACAGTTGGCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGCGTTTTTTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGC‑GTTCGGTGACTGACGTCGACA‑GCGGCGAATCCGTATCCATTCCCACGGAAGATATTAGc                                                                                                                                                                                                                                  >  1:2371024/1‑210 (MQ=255)

                                                                                                                               cAGTTGGCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGCGTTTTTTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGC‑GTTCGGTGACTGACGTCGACA‑GCGGCGAATCCGTATCCATTCCCACGGAAGATATTAGCGAACCGATGTTTCATCAGGGGCGTGGCGGTCTgcg                                                                                                                                                                                               <  1:1286069/243‑1 (MQ=255)

                                                                                                                               cAGTTGGCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGCGTTTTTTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGC‑GTTCGGTGACTGACGTCGACA‑GCGGCGAATCCGTATCCATTCCCACGGAAGATATTAGCGAACCGATGTTTCATCAGGGGCGTGGCGGTCTGCGCCACCGCGTGCATCCGTGCAATGACCATTTCGACCAGAACGACCGa                                                                                                                                                 >  2:1272943/1‑289 (MQ=255)

                                                                                                                                   tGGCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGCGTTTTTTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGC‑GTTCGGTGACTGACGTCGACA‑GCGGCGAATCCGTATCCATTCCCACGGAAGATATTAGCGAACCGATGTTTCATCAGGGGCGTGGCGGTCTGCGCCACCGCGTGCATCCGGGCAATGACCATTTCGTCCAGAACGACCGAATTg                                                                                                                                             >  1:639614/1‑289 (MQ=255)

                                                                                                                                    ggCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGCGTTTTTTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGC‑GTTCGGTGACTGACGTCGACA‑GCGGCGAATCCGTATCCATTCCCa                                                                                                                                                                                                                                                <  2:1836677/189‑1 (MQ=255)

                                                                                                                                    ggCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGCGTTTTTTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGC‑GTTCGGTGACTGACGTCGACA‑GCGGCGAATCCGTATCCATTCCCACGGAAGATATTAGCGAACCGATGTTTCATCAGGGGCGTgg                                                                                                                                                                                                        <  1:1610651/229‑1 (MQ=255)

                                                                                                                                     gCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGCGTTTTTTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGC‑GTTCGGTGACTGACGTCGACA‑GCGGCGAATCCGTATCCATTCCCACGGAAGATATTAGCGAACCGATGTTTCATCAGGGGCGTGGCGGt                                                                                                                                                                                                    <  2:1861581/232‑1 (MQ=255)

                                                                                                                                     gCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGCGTTTTTTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGC‑GTTCGGTGACTGACGTCGACA‑GCGGCGAATCCGTATCCATTCCCACGGAAGATATTAGCGAACCGATGTTTCATCAGGGGCGTGGCGGTCTGCGCCACCGCGTGCATCCGGGCAATGACCATTTCGTCCAGAACGACCGAATTGa                                                                                                                                            >  1:412002/1‑288 (MQ=255)

                                                                                                                                      caaagttaggaCGTGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGCGTTTTTTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGC‑GTTCGGTGACTGACGTCGACA‑GCGGCGAATCCGTATCCATTCCCACGGAAGATATTAGCGAACCGATGTTTCATCAGGGGCGTGGCGGTCTGCGCCACCGCGTGCATCCGGGCAATGACCATTTCGTCCAGAACGACCGAATTGaa                                                                                                                                           <  2:1239285/282‑1 (MQ=255)

                                                                                                                                      caaagggaataCGGGGGGGATATGACCTGGTTTAGTGACCGGCGTCTAAACGGCAAAAACAAAAGCATGGTGAATCGCCAGCGTTTTTTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGC‑GTTCGGTGACTGACGTCGACA‑GCGGCGAATCCGTATCCATTCCCACGGAAGATATTAGCGAACCGATGTTTCATCAGGGGCGTGGCGGTCTGCGCCACCGCGTGCATCCGGGCAATGACCATTTCGTCCAGAACGACCGAATTGaa                                                                                                                                           <  2:2446024/279‑1 (MQ=255)

                                                                                                                                      cAAATGTAGTACGGGCGGCATATGACCTGGTTTATTGACCGGCTTCTAAACGACAAAAACAAAAGCACGGTGAATCACCAGCGTTTTTTACGCCGTTATAAAGCTCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGC‑GTTCGTTGACTGACACCGACA‑GCGGCGAATCCGTATCCATTCCCACGGAAGATATTAGCGAACCGATGTTTCATCAGGGGCGTGGCGGTCTGCGCCACCGCGTGCATCCGGGCAATGACCATTTCGTCCAGAACGACCGAATTGaa                                                                                                                                           <  1:2109718/288‑1 (MQ=255)

                                                                                                                                      aaaaTGTAGTACGGGGGGAATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGCGTTTTTTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGC‑GTTCGGTGACTGACGTCGACA‑GCGGCGAATCCGTATCCATTCCCACGGAAGATATTAGCGAACCGATGTTTCATCAGGGGCGTGGCGGTCTGCGCCACCGCGTGCATCCGGGCAATGACCATTTCGTCCAGAACGACCGAATTGaa                                                                                                                                           <  1:3019834/287‑1 (MQ=255)

                                                                                                                                       aaaTGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGCGTTTTTTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGC‑GTTCGGTGACTGACGTCGACA‑GCGGCGAATTCGTATCCATTCCCACg                                                                                                                                                                                                                                              >  2:408199/1‑188 (MQ=255)

                                                                                                                                       aaaTGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGCGTTTTTTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGC‑GTTCGGTGACTGACGTCGACA‑GCGGCGAATCCGTATCCATTCCCACGGAAGATATTAGCGAACCGATGTTTCATCAGGGGCGTGGCg                                                                                                                                                                                                      >  2:693525/1‑228 (MQ=255)

                                                                                                                                          tGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGCGTTTTTTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGC‑GTTCGGTGACTGACGTCGAc                                                                                                                                                                                                                                                                          <  1:1159747/158‑1 (MQ=255)

                                                                                                                                          tGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGCGTTTTTTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGC‑GTTCGGTGACTGACGTCGAc                                                                                                                                                                                                                                                                          >  2:1159747/1‑158 (MQ=255)

                                                                                                                                          ggtagtaCGGCGGGCATATGACCTGGTTTATTAACCGTAGTCTGAACGGCAAAAACAAAAGCATGGTGATTCGCCAGCGGTTTTTACGCCGTTAGAAAGCGCAAATTAAACAGTCGATGTGCGAGGCCATTAATAAGC‑GTTCGGTGACTGACGTCGACA‑GCGGCGAATCCGTATCCATTCCCACGGAAGATATTAGCGAACCGATGTTTCATCAGGGGCGTGGCGGTCTGCGCCACCGCGTGCATCCGGGCAATGACCAtt                                                                                                                                                                  <  2:2894763/260‑1 (MQ=255)

                                                                                                                                            tagtaCGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGCGTTTTTTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGC‑GTTCGGTGACTGACGTCGACA‑GCGGCGAATCCGTATCCATTCCCACg                                                                                                                                                                                                                                              >  1:2010426/1‑183 (MQ=255)

                                                                                                                                            tagtaCGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGCGTTTTTTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGC‑GTTCGGTGACTGACGTCGACA‑GCGGCGAATCCGTATCCATTCCCACg                                                                                                                                                                                                                                              <  2:2010426/183‑1 (MQ=255)

                                                                                                                                                aCGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGCGTTTTTTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGC‑GTTCGGTGACTGACGTCGACA‑GCGGCGAATCCGTATCCATTCCCACGGAAGATATTAGCGAACCGATGTTTCATCAGGGGCGTGGCGGTCTGCGCCACCGCGTGCATCCGGGCAATGACCAt                                                                                                                                                                   >  2:2286748/1‑254 (MQ=255)

                                                                                                                                                    ggggCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGCGTTTTTTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGC‑GTTCGGTGACTGACGTCGACA‑GCGGCGAATCCGTATCCATTCCCACGGAAGATATTAGCGAACCGATGTTTCATCAGGGGCGTGGCGGTCTGCGCCACCGCGTGCATCCGGGCAATGACCATTTCGTCCAGAACGACCGAATTGAACGTCCCCAGGGTggc                                                                                                                            >  2:1602800/1‑289 (MQ=255)

                                                                                                                                                    ggggCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGCGTTTTTTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGC‑GTTCGGTGACTGACGTCGACA‑GCGGCGAATCCGTATCCATTCCCACGGAAGATATTAGCGAACCGATGTTTCATCAGGGGCGTGGCGGTCTGCGCCACCGCGTGCATCCGGGCAATGACCATTTCGTCCAGAACGACCGAATTGAACGTCCCCAGGGTggc                                                                                                                            >  2:2587026/1‑289 (MQ=255)

                                                                                                                                                      ggCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGCGTTTTTTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGC‑GTTCGGTGACTGACGTCGACA‑GCGGCGAATCCGTATCCATTCCCACGGAAGATATTAGCGAACCGATGTTTCATCAGGGGCGTGGCGGTCTGCGCCACCGCGTGCATCCGGGCAATGACCATTTCGTCCAGAACGACCGAATTGaa                                                                                                                                           <  2:1334273/272‑1 (MQ=255)

                                                                                                                                                      ggCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGCGTTTTTTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGC‑GTTCGGTGACTGACGTCGACA‑GCGGCGAATCCGTATCCATTCCCACGGAAGATATTAGCGAACCGATGTTTCATCAGGGGCGTGGCGGTCTGCGCCACCGCGTGCATCCGGGCAATGACCATTTCGTCCAGAACGACCGAATTGaa                                                                                                                                           >  1:1334273/1‑272 (MQ=255)

                                                                                                                                                         atatGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGCGTTTTTTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGC‑GTTCGGTGACTGACGTCGACA‑GCGGCGAATCCGTATCCa                                                                                                                                                                                                                                                      >  2:164229/1‑162 (MQ=255)

                                                                                                                                                         atatGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGCGTTTTTTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGC‑GTTCGGTGACTGACGTCGACA‑GCGGCGAATCCGTATCCATTCCCACGGAAGATATTAGCGAACCGATGTTTCATCAGGGGCGTGGCGGTCTGCGCCACCGCGTGCATCCGGGCAATGACCATTTCGTCCAGAACGACCGAATTGAACGTCCCCAGGGTGgcggcg                                                                                                                        <  2:959342/288‑1 (MQ=255)

                                                                                                                                                         atatGACCTGGCTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGCGTTTTTTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGC‑GTTCGGTGACTGACGTCGACA‑GCGGCGAATCCGTATCCATTCCCACGGAAGATATTAGCGAACCGATGTTTCATCAGGGGCGTGGCGGTCTGCGCCACCGCGTGCATCCGGGCAATGACCATTTCGTCCAGAACGACCGAATTGAACGTCCCCAGGGTGGcggcgg                                                                                                                       >  2:785815/1‑289 (MQ=255)

                                                                                                                                                               ccTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGCGTTTTTTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGC‑GTTCGGTGACTGACGTCGACA‑GCGGCGAATCCGTATCCATTCCCACGGAAGATATTAGCGAACCGATGTTTCATCAGGGGCGTGGCGGTCTGCGCCACCGCGTGCATCCGGGCAATGACCATTTCGTCCAGAACGACCGAATTGAACGTCCCCAGGGTGGCGGCGGAGGTTc                                                                                                                 <  1:2484787/289‑1 (MQ=255)

                                                                                                                                                               ccTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGCGTTTTTTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGC‑GTTCGGTGACTGACGTCGACA‑GCGGCGAATCCGTATCCATTCCCACGGAAGATATTAGCGAACCGATGTTTCATCAGGGGCGTGGCGGTCTGCGCCACCGCGTGCATCCGGGCAATGACCATTTCGTCCAGAACGACCGAATTGAACGTCCCCAGGGTGGCGGCGGAGGTTc                                                                                                                 <  2:3014209/289‑1 (MQ=255)

                                                                                                                                                                cTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGCGTTTTTTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGC‑GTTCGGTGACTGACGTCGACA‑GCGGCGAATCCGTATCCATTCCCACGGAAGATATTAGCGAACCGATGTTTCATCAGGGGCGTGGCGGTCTGCGCCa                                                                                                                                                                                            <  2:2216210/213‑1 (MQ=255)

                                                                                                                                                                cTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGCGTTTTTTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGC‑GTTCGGTGACTGACGTCGACA‑GCGGCGAATCCGTATCCATTCCCACGGAAGATATTAGCGAACCGATGTTTCATCAGGGGCGTGGCGGTCTGCGCCa                                                                                                                                                                                            >  1:2216210/1‑213 (MQ=255)

                                                                                                                                                                cTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGCGTTTTTTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGC‑GTTCGGTGACTGACGTCGACA‑GCGGCGAATCCGTATCCATTCCCACGGAAGATATTAGCGAACCGATGTTTCATCAGGGGCGTGGCGGTCTGCGCCACCGCGTGCATCCGGGCAATGACCATTTCGTCCAGAACGACCGAATTGAACGTCCCCAGGGTGGCGGCGGAGGTTcc                                                                                                                >  1:1110161/1‑289 (MQ=255)

                                                                                                                                                                  ggTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGCGTTTTTTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGC‑GTTCGGTGACTGACGTCGACA‑GCGGCGAATCCGTATCCATTCCCACGGAAGATATTAGCGAACCGATGTTTCATCAGGGGCGTGGCGGTCTGCGCCACCGCGTGCATCCGGGCAATGACCATTTCg                                                                                                                                                               >  2:1814128/1‑240 (MQ=255)

                                                                                                                                                                   gTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGCGTTTTTTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGC‑GTTCGGTGACTGACGTCGACA‑GCGGCGAATCCGTATCCATTCCCACGGAAGATATTAGCGAACCGATGTTTCATCAGGGGCGTGGCGGTCTGCGCCACCGCGTGCATCCGGGc                                                                                                                                                                            >  1:840340/1‑226 (MQ=255)

                                                                                                                                                                   gTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGCGTTTTTTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGC‑GTTCGGTGACTGACGTCGACA‑GCGGCGAATCCGTATCCATTCCCACGGAAGATATTAGCGAACCGATGTTTCATCAGGGGCGTGGCGGTCTGCGCCACCGCGTGCATCCGGGCAATGACCATTTCGTCCAGAACGACCGAATTGAACGTCCCCAGGGTGGCGGCGGAGGTTCCGGc                                                                                                             >  2:3164331/1‑289 (MQ=255)

                                                                                                                                                                   gTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAAGCGCCAGCGTTTTTTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGC‑GTTCGGTGACTGACGTCGACA‑GCGGCGAATCCGTATCCATTCCCACGGAAGATATTAGCGAACCGATGTTTCATCAGGGGCGTGGCGGTCTGCGCCACCGCGTGCATCCGGGCAATGa                                                                                                                                                                       <  1:1714338/231‑1 (MQ=255)

                                                                                                                                                                          ggacggtggcTGAACGGAAAAAGCAAAAGAATGGGGAATCGCCAGCGTTTTTTAGGCCGTTATACAGCGCAAATTGAACAGTCGATCTCCGAGGCCATTAATAAGC‑GTTCGGTGACTGACGTCGACA‑GCGGCGAATCCGTATCCATTCCCACGGAAGATATTAGCGAACCGATGTTTCATCAGGGGCGTGGCGGTCTGCGCCACCGCGTGCATCCGGGCAATGACCATTTCGTCCAGAACGACCGAATTGAACGTCCCCAGGGTGGCGGCGGAGGTTCCGGCAGTGGTc                                                                                                      <  2:2505375/280‑1 (MQ=255)

                                                                                                                                                                             cGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGCGTTTTTTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGC‑GTTCGGTGACTGACGTCGACA‑GCGGCGAATCCGTATCCATTCCCACGGAAGATATTAGCGAACCGATGTTTCATCAGGGGCGTGGCCGTATGCGCCACCGCCTGCATCCGGGGAAGGACCATTTCGTCCATACCCGTCGAACTCAACGTCCCCAGGGTGGAGGAGGACGTTCCGGccagggtccgt                                                                                                   >  2:80713/1‑279 (MQ=255)

                                                                                                                                                                                   cTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGCGTTTTTTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGC‑GTTCGGTGACTGACGTCGACA‑GCGGCGAATCCGTATCCATTCCCACGGAAGATATTAGCGAACCGATGTTTCATCAGGGGCGTGGCGGTCTGCGCCACCGCGTGCATCCGGGCAATGACCATTTCGTCCAGAACGACCGAATTGAACGTCCCCAGGGTGGCGGCGGAGGTTCCGGCAGTGGTCAGggccagg                                                                                             <  1:2703590/289‑1 (MQ=255)

                                                                                                                                                                                          gCAAAAACAAAATCATGGTGAATCGCCAGCGTTTTTTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGC‑GTTCGGTGACTGACGTCGACA‑GCGGCGAATCCGTATCCATTCCCACGGAAGATATTAGCGAACCGATGTTTCATCAGGGGCGTGGCGGt                                                                                                                                                                                                    >  1:202831/1‑179 (MQ=255)

                                                                                                                                                                                           cAAAAACAAAAGCATGGTGAATCGCCAGCGTTTTTTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGC‑GTTCGGTGACTGACGTCGACA‑GCGGCGAATCCGTATCCATTCCCACGGAAGATATTAGCGAACCTATGTTTCATCAGGGGCGTGGCGGTCTGCGCCACCGCGTGCATCCGGGCAATGACCATTTCGTCCAGAACGAc                                                                                                                                                    >  2:168812/1‑226 (MQ=255)

                                                                                                                                                                                                                      gCGTTTTTTACGCCGTTATAAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGC‑GTTCGGTGACTGACGTCGACA‑GCGGCGAATCCGTATCCATTCCCACGGAAGATATTAGCGAACCGATGTTTCATCAGGGGCGTGGCGGTCTGCGCCACCGCGTGCATCCGGGCAATGACCATTTCGTCCAGAACGa                                                                                                                                                     <  2:803837/198‑1 (MQ=255)

                                                                                                                                                                                                                                        taAAGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGC‑GTTCGGTGACTGACGTCGACA‑GCGGCGAATCCGTATCCATTCCCACGGAAGATATTAGCGAACCGATGTTTCATCAGGGGCGTGGCGGTCTGCGCCACCGCGTGCATCCGGGCAATGACCATTTCGTCCAGAACGACCGAATTGAACGTCCCCAGGGTGGCGGCGGAGGTTCCGGCAGTGGTCAGGGCCAGGCCAGCCAGGATGGTGAAGGTCAGGATGAATTTGTCTTTCAGATTTCGAAAGAt                                        <  2:3152211/289‑1 (MQ=255)

                                                                                                                                                                                                                                          aaGCGCAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGC‑GTTCGGTGACTGACGTCGACA‑GCGGCGAATCCGTATCCATTCCCACGGAAGATATTAGCGAACCGATGTTTCATCAGGGGCGTGGCGGTCTGCGCCACCGCGTGCATCCGGGCAATGACCATTTCGTCCAGAACGACCGAATTGAACGTCCCCAGGGTGGCGGCGGAGGTTCCGGCAGTGGTCAGGGCCAGGCCAGCCAGGATGGTGAAGGTCAGGATGAATTTGTCTTTCAGATTTCGAAAGATGa                                      <  2:1110161/289‑1 (MQ=255)

                                                                                                                                                                                                                                             cgcAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGC‑GTTCGGTGACTGACGTCGACA‑GCGGCGAATCCGTATCCATTCCCACGGAAGATATTAGCGAACCGATGTTTCATCAGGGGCGTGGCGGTCTGCGCCACCGCGTGCATCCGGGCAATGACCATTTCGTCCAGAACGAc                                                                                                                                                    <  2:644685/176‑1 (MQ=255)

                                                                                                                                                                                                                                               cAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGC‑GTTCGGTGACTGACGTCGACA‑GCGGCGAATCCGTATCCATTCCCACGGAAGATATTAGCGAACCGATGTTtcatc                                                                                                                                                                                                                  <  2:2768886/112‑1 (MQ=255)

                                                                                                                                                                                                                                               cAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGC‑GTTCGGTGACTGACGTCGACA‑GCGGCGAATCCGTATCCATTCCCACGGAAGATATTAGCGAACCGATGTTtcatc                                                                                                                                                                                                                  >  1:2768886/1‑112 (MQ=255)

                                                                                                                                                                                                                                               cAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGC‑GTTCGGTGACTGACGTCGACA‑GCGGCGAATCCGTATCCATTCCCACGGAAGATATTAGCGAACCGATGTTTCATCAGGGGCGTGGCGGTCTGCGCCACCGCGTGCATCCGGGCAATGACCAtt                                                                                                                                                                  >  1:1815708/1‑160 (MQ=255)

                                                                                                                                                                                                                                               cAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGC‑GTTCGGTGACTGACGTCGACA‑GCGGCGAATCCGTATCCATTCCCACGGAAGATATTAGCGAACCGATGTTTCATCAGGGGCGTGGCGGTCTGCGCCACCGCGTGCATCCGGGCAATGACCATTTCg                                                                                                                                                               <  2:897119/163‑1 (MQ=255)

                                                                                                                                                                                                                                               cAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGC‑GTTCGGTGACTGACGTCGACA‑GCGGCGAATCCGTATCCATTCCCACGGAAGATATTAGCGAACCGATGTTTCATCAGGGGCGTGGCGGTCTGCGCCACCGCGTGCATCCGGGCAATGACCATTTCGTCCAGAACGACCGAATTGAACGTCCCCAGGGTGGCGGCGGAGGTTCCGGCAGTGGTCAGGGCCAGGCCAGCCCGGATGGTGAAGGTCAGGATGAGTTTGGTTTTCAGATTTCGAAAGATGAGTa                                   >  2:1198936/1‑287 (MQ=255)

                                                                                                                                                                                                                                               cAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGC‑GTTCGGTGACTGACGTCGACA‑GCGGCGAATCCGTATCCATTCCCACGGAAGATATTAGCGAACCGATGTTTCATCAGGGGCGTGGCGGTCTGCGCCACCGCGTGCATCCGGGCAATGACCATTTCGTCCAGAACGACCGAATTGAACGTCCCCAGGGTGGCGGCGGAGGTTCCGGCAGTGGTCAGGGCCAGGCCAGCCAGGATGGTGAAGGTCAGGATGAATTTGTCTTTCAGATTTCGAAAGAt                                        >  1:925089/1‑282 (MQ=255)

                                                                                                                                                                                                                                               cAAATTAAACAGTCGATCTCCGAGGCCATTAATAAGC‑GTTCGGTGACTGACGTCGACA‑GCGGCGAATCCGTATCCATTCCCACGGAAGATATTAGCGAACCGATGTTTCATCAGGGGCGTGGCGGTCTGCGCCACCGCGTGCATCCGGGCAATGACCATTTCGTCCAGAACGACCGAATTGAACGTCCCCAGGGTGGCGGCGGAGGTTCCGGCAGTGGTCAGGGCCAGGCCAGCCAGGATGGTGAAGGTCAGGATGAATTTGTCTTTCAGATTTCGAAAGATGAGTa                                   >  1:624075/1‑287 (MQ=255)

                                                                                                                                                                                                                                                    tAAACAGTCGATCTCCGAGGCCATTAATAAGC‑GTTCGGTGACTGACGTCGACA‑GCGGCGAATCCGTATCCATTCCCACGGAAGATATTAGCGAACCGATGTTTCATCAGGGGCGTGGCGGTCTGCGCCACCGCGTGCATCCGGGCAATGACCATTTCGTCCAGAACGACCGAATTGAACGTCCCCAGGGTGGCGGCGGAGGTTCCGGCAGTGGTCAGGGCCAGGCCAGCCAGGATGGTGAAGGTCAGGATGAATTTGTCTTTCAGATTTCGAAAGATGAGTATCTTGAt                            <  1:1678485/289‑1 (MQ=255)

                                                                                                                                                                                                                                                          gtcgaTCTCCGAGGCCATTAATAAGC‑GTTCGGTGACTGACGTCGACA‑GCGGCGAATCCGTATCCATTCCCACGGAAGATATTAGCGAACCGATGTTTCATCAGGGGCGTGGCGGTCTGCGCCACCACGTGCATCCGGGCAATGACCATTTCGTCCAGAACGACCGAATTGAACGTCCCCAGGGTGGCGGCGGAGGTTCCGGCAGTGGTCAGGGCCAGGCCAGCCAGGATGGTGAAGGTCAGGATGAATTTGTCTTTCAGATTTCGAAAGATGAGTATCTTGATCTGc                        >  2:262625/5‑287 (MQ=255)

                                                                                                                                                                                                                                                           tcgaTCTCCGAGGCCATTAATAAGC‑GTTCGGTGACTGACGTCGACA‑GCGGCGAATCCGTATCCATTCCCACGGAAGATATTAGCGAACCGATGTTTCATCAGGGGCGTGGCGGTCTGCGCCACCGCGTGCATCCGGGCAATGACCATTTCGTCCAGAACGa                                                                                                                                                     <  2:706099/158‑1 (MQ=255)

                                                                                                                                                                                                                                                            cgaTCTCCGAGGCCATTAATAAGC‑GTTCGGTCACTGACGTCGACA‑GCGGCGAATCCGTATCCATTCCCACGGAAGATATTAGCGAACCGATGTTTCATCAGGGGCGTGGCGGTCTGCGCCACCGCGTGCATCCGGGCAATGACCATTTCGTCCAGAACGACCGAATTGAACGTCCCCAGGGTGGCGGCGGAGGTTCCGGCAGTGGTCAGGGCCAGGCCAGCCAGGATGGTGAAGGTCAGGATGAATTTGTCTTTCAGATTTCGAAAGATGAGTATCTTGAt                            >  1:876328/3‑281 (MQ=255)

                                                                                                                                                                                                                                                               tctcCGAGGCCATTAATAAGC‑GTTCGGTGACTGACGTCGACA‑GCGGCGAATCCGTATCCATTCCCACGGAAGATATTAGCGAACCGATGTTTCATCAGGGGCGTGGCGGTCTGCGCCACCGCGTGCATCCGGGCAATGACCATTTCGTCCAGAACGACCGAATTGAACGTCCCCAGGGTGGCGGCGGAGGTTCCGGCAGTGGTCAGGGCCAGGCCAGCCAGGATGGTGAAGGTCAGGATGAATTTGTCTTTCAGATTTCGAAAGATGAGTATCTTGATCTGCTCTTTg                  <  2:2089148/288‑1 (MQ=255)

                                                                                                                                                                                                                                                                              ataaGC‑GTTCGGTGACTGACGTCGACA‑GCGGCGAATCCGTATCCATTCCCACGGAAGATATTAGCGAACCGATGTTTCATCAGGGGCGTGGCGGTCTGCGCCACCGCGTGCATCCGGGCAATGACCATTTCGTCCAGAACGACCGAATTGAACGTCCCCAGGGTGGCGGCGGAGGTTCCGGCAGTGGTCAGGGCCAGGCCAGCCAGGATGGTGAAGGTCAGGATGAATTTGTCTTTCAGATTTCGAAAGATGAGTATCTTGATCTGCTCTTTGAAGATTTGGCCTTAcc  <  1:3151963/289‑1 (MQ=255)

|||

TTTACTGTGCGAATGGTATTTGCGCGTACGTAAAAGCTCTTAACAACCCTGGCCCGGTACACATGTTACCGGGCCTACAACGACAGCGAACCGTGGGCCTGAGAAGCGGCAACACAGGCGTAGCATACAGTTGGCAAATGTAGTACGGGGGGCATATGACCTGGTTTATTGACCGGCGTCTGAACGGCAAAAACAAAAGCATGGTGAATCGCCAGCGTTTTTTACGCCGTTATAAAGCGCAAATTAAACAGAGCATCTCCGAGGCCATTAATAAGC‑GTAGCGTGACTGACGTCGACA‑GCGGCGAATCCGTATCCATTCCCACGGAAGATATTAGCGAACCGATGTTTCATCAGGGGCGTGGCGGTCTGCGCCACCGCGTGCATCCGGGCAATGACCATTTCGTCCAGAACGACCGAATTGAACGTCCCCAGGGTGGCGGCGGAGGTTCCGGCAGTGGTCAGGGCCAGGCCAGCCAGGATGGTGAAGGTCAGGATGAATTTGTCTTTCAGATTAGCAAAGATGAGTATCTTGATCTGCTCTTTGAAGATTTGGCCTTACC  >  CP042583/1550856‑1551414

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 11 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 38 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A