Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A3 F210 I1 R1 4927 250.2 4002508 96.7% 3870425 266.6

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA CP042583 1,483,415 3 bp→CGA intergenic (–/–) – / – –/–

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0425831,483,4150GC99.6% 597.5 / NA 255intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base G (0/1);  new base C (141/113);  total (141/114)
Fisher's exact test for biased strand distribution p-value = 4.47e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*CP0425831,483,4160CG99.2% 589.2 / NA 255intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base C (1/1);  new base G (140/112);  total (141/114)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.98e-01
*CP0425831,483,4170TA100.0% 606.2 / NA 255intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base A (141/114);  total (141/114)

Only 100 of 255 total aligned reads displayed.

CTTCACCCAGTTGATATTCAAACGGGATGTTGTTTTCTTCCAGCGCAACCGCCAGGTCCGCCTCAGCACGATCCCACATTTCGTCGCTGCCAATACGTTTTTCAGGACGAGTGGAGAGTTTGACGACGATCTTCTCGAAGCCAAAAGTGCTGTACATATCATAGACTAAACGGATACATCCGTTAACTTCATCGCGAATTTGTTCTTCAGTACAGAAGATATGCGCGTCATCCTGGGTAAATCCACGCACGCGCATCAGGCCATGCAGGC‑TACCACTCGGCTCGTTACGGTGGCAGCTACCAAACTCGGCCATACGCAGCGGCAGATCGCGATAAGACTTCAGCCCCTGGTTGAAAATTTGTACGTGACCCGGGCAGTTCATCGGCTTAATGCAGTATTCACGGTTCTCAGAAGATGTGGTGAACATTGCATCTTTGTAGTTGTCCCAGTGACCGGTTTTTTCCCACAGGACACGGTCCATCATGAACGGACCTTTAACTTCCTGATACTGGTACTCTTTCAGTTTAGAACGAACAAACACTTCCAG  >  CP042583/1483147‑1483693
                                                                                                                                                                                                                                                                            ||||                                                                                                                                                                                                                                                                                    
cTTCACCCAGTTGATATTCAAACGGGATGTTGTTTTCTTCCAGCGCAACCGCCAGGTCCGCCTCAGCACGATCCCACATTTCGTCGCTGCCAATACGTTTTTCAGGACGAGTGGAGAGTTTGACGACGATCTTCTCGAAGCCAAAAGTGCTGTACATATCATAGACTAAACGGATACATCCGTTAACTTCATCGCGAATTTGTTCTTCAGTACAGAAGATATGCGCGTCATCCTGGGTAAATCCACGCACGCGCATCAGGCCATGCAGCG‑AACCTGACGGCTCGTTACg                                                                                                                                                                                                                                                                    >  1:778739/1‑289 (MQ=255)
  tCACCCAGTTGATATTCAAACGGGATGTTGTTTTCTTCCAGCGCAACCGCCAGGTCCGCCTCAGCACGATCCCACATTTCGTCGCTGCCAATACGTTTTTCAGGACGAGTGGAGAGTTTGACGACGATCTTCTCGAAGCCAAAAGTGCTGTACATATCATAGACTAAACGGATACATCCGTTAACTTCATCGCGAATTTGTTCTTCAGTACAGAAGATATGCGCGTCATCCTGGGTAAATCCACGCACGCGCATCAGGCCATGCAGCG‑AACCTGACGGCTCGTTACGGt                                                                                                                                                                                                                                                                  >  1:1508189/1‑289 (MQ=255)
       cAGTTGATATTCAAACGGGATGTTGTTTTCTTCCAGCGCAACCGCCAGGTCCGCCTCAGCACGATCCCACATTTCGTCGCTGCCAATACGTTTTTCAGGACGAGTGGAGAGTTTGACGACGATCTTCTCGAAGCCAAAAGTGCTGTACATATCATAGACTAAACGGATACATCCGTTAACTTCATCGCGAATTTGTTCTTCAGTACAGAAGATATGCGCGTCATCCTGGGTAAATCCACGCACGCGCATCAGGCCATGCAGCG‑AACCTGACGGCTCGTTACGGTGGCAg                                                                                                                                                                                                                                                             <  1:130736/289‑1 (MQ=255)
          ttGATATTCAAACGGGATGTTGTTTTCTTCCAGCGCAACCGCCAGGTCCGCCTCAGCACGATCCCACATTTCGTCGCTGCCAATACGTTTTTCAGGACGAGTGGAGAGTTTGACGACGATCTTCTCGAAGCCAAAAGTGCTGTACATATCATAGACTAAACGGATACATCCGTTAACTTCATCGCGAATTTGTTCTTCAGTACAGAAGATATGCGCGTCATCCTGGGTAAATCCACGCACGCGCATCAGGCCATGCAGCG‑AACCTGACGGCTCGTTACGGTGGCAGCt                                                                                                                                                                                                                                                           >  1:531636/1‑288 (MQ=255)
          ttGATATTCAAACGGGATGTTGTTTTCTTCCAGCGCAACCGCCAGGTCCGCCTCAGCACGATCCCACATTTCGTCGCTGCCAATACGTTTTTCAGGACGAGTGGAGAGTTTGACGACGATCTTCTCGAAGCCAAAAGTGCTGTACATATCATAGACTAAACGGATACATCCGTTAACTTCATCGCGAATTTGTTCTTCAGTACAGAAGATATGCGCGTCATCCTGGGTAAATCCACGCACGCGCATCAGGCCATGCAGCG‑AACCTGACGGCTCGTTACGGTGGCAGCt                                                                                                                                                                                                                                                           >  1:140849/1‑288 (MQ=255)
                 tCAAACGGGATGTTGTTTTCTTCCAGCGCAACCGCCAGGTCCGCCTCAGCACGATCCCACATTTCGTCGCTGCCAATACGTTTTTCAGGACGAGTGGAGAGTTTGACGACGATCTTCTCGAAGCCAAAAGTGCTGTACATATCATAGACTAAACGGATACATCCGTTAACTTCATCGCGAATTTGTTCTTCAGTACAGAAGATATGCGCGTCATCCTGGGTAAATCCACGCACGCGCATCAGGCCATGCAGCG‑AACCTGACGGCTCGTTACGGTGGCAGCTACCAAACt                                                                                                                                                                                                                                                   <  2:1139169/289‑1 (MQ=255)
                 tCAAACGGGATGTTGTTTTCTTCCAGCGCAACCGCCAGGTCCGCCTCAGCACGATCCCACATTTCGTCGCTGCCAATACGTTTTTCAGGACGAGTGGAGAGTTTGACGACGATCTTCTCGAAGCCAAAAGTGCTGTACATATCATAGACTAAACGGATACATCCGTTAACTTCATCGCGAATTTGTTCTTCAGTACAGAAGATATGCGCGTCATCCTGGGTAAATCCACGCACGCGCATCAGGCCATGCAGCG‑AACCTGACGGCTCGTTACGGTGGCAGCTACCAAACt                                                                                                                                                                                                                                                   <  2:388128/289‑1 (MQ=255)
                        ggATGTTGTTTTCTTCCAGCGCAACCGCCAGGTCCGCCTCAGCACGATCCCACATTTCGTCGCTGCCAATACGTTTTTCAGGACGAGTGGAGAGTTTGACGACGATCTTCTCGAAGCCAAAAGTGCTGTACATATCATAGACTAAACGGATACATCCGTTAACTTCATCGCGAATTTGTTCTTCAGTACAGAAGATATGCGCGTCATCCTGGGTAAATCCACGCACGCGCATCAGGCCATGCAGCG‑AACCTGACGGCTCGTTACGGTGGCAGCTACCAAACTCGGCCa                                                                                                                                                                                                                                             <  2:979171/288‑1 (MQ=255)
                           tgttgtTTTCTTCCAGCGCAACCGCCAGGTCCGCCTCAGCACGATCCCACATTTCGTCGCTGCCAATACGTTTTTCAGGACGAGTGGAGAGTTTGACGACGATCTTCTCGAAGCCAAAAGTGCTGTACATATCATAGACTAAACGGATACATCCGTTAACTTCATCGCGAATTTGTTCTTCAGTACAGAAGATATGCGCGTCATCCTGGGTAAATCCACGCACGCTCATCAGGCCATGCAGCG‑AACCTGACGGCTCGTTACGGTGGCAGCTACCCAACCCGGCCaaaa                                                                                                                                                                                                                                          >  2:340336/1‑285 (MQ=255)
                                 tttCTTCCAGCGCAACCGCCAGGTCCGCCTCAGCACGATCCCACATTTCGTCGCTGCCAATACGTTTTTCAGGACGAGTGGAGAGTTTGACGACGATCTTCTCGAAGCCAAAAGTGCTGTACATATCATAGACTAAACGGATACATCCGTTAACTTCATCGCGAATTTGTTCTTCAGTACAGAAGATATGCGCGTCATCCTGGGTAAATCCACGCACGCGCATCAGGCCATGCAGCG‑AACCTGACGGCTCGTTACGGTGGCAGCTACCAAACTCGGCCATACGCAGCg                                                                                                                                                                                                                                    >  1:908665/1‑288 (MQ=255)
                                          gcgcAACCGCCAGGTCCGCCTCAGCACGATCCCACATTTCGTCGCTGCCAATACGTTTTTCAGGACGAGTGGAGAGTTTGACGACGATCTTCTCGAAGCCAAAAGTGCTGTACATATCATAGACTAAACGGATACATCCGTTAACTTCATCGCGAATTTGTTCTTCAGTACAGAAGATATGCGCGTCATCCTGGGTAAATCCACGCACGCGCATCAGGCCATGCAGCG‑AACCTGACGGCTCGTTACGGTGGCAGCTACCAAACTCGGCCATACGCAGCGGCAGATcgc                                                                                                                                                                                                                           >  2:735605/1‑288 (MQ=255)
                                                            ccTCAGCACGATCCCACATTTCGTCGCTGCCAATACGTTTTTCAGGACGAGTGGAGAGTTTGACGACGATCTTCTCGAAGCCAAAAGTGCTGTACATATCATAGACTAAACGGATACATCCGTTAACTTCATCGCGAATTTGTTCTTCAGTACAGAAGATATGCGCGTCATCCTGGGTAAATCCACGCACGCGCATCAGGCCCTGCAGCG‑AACCTGACGGCTCGTCACGGTTGCAGCTACCAAACCTGGACAAACGACGCGGCGGATCGCGGTAAGACTTCAGCCCCTg                                                                                                                                                                                                        >  2:8865/1‑289 (MQ=255)
                                                                          cacaTTTCGTCGCTGCCAATACGTTTTTCAGGACGAGTGGAGAGTTTGACGACGATCTTCTCGAAGCCAAAAGTGCTGTACATATCATAGACTAAACGGATACATCCTTTAACTTCATCGCGCATTTGTTCTTCAGTACAGAAGATATGCGTGTCATTCTGGTTAACTCCACGCTCGCGCATCAGGCCATGCAGCG‑AACCTGACGGCTCGTTACGGTGGCAGCTCCCAAACTCGGCCATACGCAGCGGCATATAGCGATACGACATCAGCCCCTGGTTGCCAATTCGTa                                                                                                                                                                                          >  2:1197201/1‑289 (MQ=255)
                                                                                 cgtcgCTGCCAATACGTTTTTCAGGACGAGTGGAGAGTTTGACGACGATCTTCTCGAAGCCAAAAGTGCTGTACATATCATAGACTAAACGGATACATCCGTTAACTTCATCGCGAATTTGTTCTTCAGTACAGAAGATATGCGCGTCATCCTGGGTAAATCCACGCACGCGCATCAGGCCATGCAGCG‑AACCTGACGGCTCGTTACGGTGGCAGCTACCAAACTCGGCCATACGCAGCGGCAGCTCGCGATAAGACTTCAGCCCCTGGTTGAAAATTTGTACGTGAc                                                                                                                                                                                    >  1:378421/1‑288 (MQ=255)
                                                                                             tACGTTTTTCAGGACGAGTGGAGAGTTTGACGACGATCTTCTCGAAGCCAAAAGTGCTGTACATATCATAGACTAAACGGATACATCCGTTAACTTCATCGCGAATTTGTTCTTCAGTACAGAAGATATGCGCGTCATCCTGGGTAAATCCACGCACGCGCATCAGGCCATGCAGCG‑AACCTGACGGCTCGTTACGGTGGCAGCTACCAAACTCGGCCATACGCAGCGGCAGATCGCGATAAGACTTCAGCCCCTGGTTGAAAATTTGTACGTGACCCGGGCAGTTCAt                                                                                                                                                                       <  1:415576/289‑1 (MQ=255)
                                                                                             tACGTTTTTCAGGACGAGTGGAGAGTTTGACGACGATCTTCTCGAAGCCAAAAGTGCTGTACATATCATAGACTAAACGGATACATCCGTTAACTTCATCGCGAATTTGTTCTTCAGTACAGAAGATATGCGCGTCATCCTGGGTAAATCCACGCACGCGCATCAGGCCATGCAGCG‑AACCTGACGGCTCGTTACGGTGGCAGCTACCAAACTCGGCCATACGCAGCGGCAGATCGCGATAAGACTTCAGCCCCTGGTTGAAAATTTGTACGTGACCCGGGCAGTTCAt                                                                                                                                                                       <  2:417307/289‑1 (MQ=255)
                                                                                             tACGTGTTTCAGGACGAGTGGAGAGTTTGACGACGATCTTCTCGAAGCCAAAAGTGCTGTACATATCATAGACTAAACGGATACATCCGTTAACTTCATCGCGAATTTGTTCTTCAGTACAGAAGATATGCGCGTCATCCTGGGTAAATCCACGCACGCGCATCAGGCCATGCAGCG‑AACCTGACGGCTCGTTACGGTGGCAGCTACCAAACTCGGCCATACGCAGCGGCAGATCGCGATAAGACTTCAGCCCCTGGTTGAAAATTTGTACGTGACCCGGGCAGTTCAt                                                                                                                                                                       <  2:751036/289‑1 (MQ=255)
                                                                                                         gACGAGTGGGGGGTTTGACACGGAGCTTCTCGAAGCCAAAAGTGCTGTACATATCGTAGACTAAACGGATACATCCGTTAACTTCATCGCGAATTTGTTCTTCAGTACAGAAGATATGCGCGTCATCCTGGGTAAATCCACGCACGCGCATCAGGCCATGCAGCG‑AACCTGACGGCTCGTTACGGTGGCAGCTACCAAACTCGGCCATACGCAGCGGCAGATCGCGATAAGACTTCAGCCCCTGGTTGAAAATTTGTACGTGACCCGGGCAGTTCATCGGCTTAATGc                                                                                                                                                            <  2:497782/288‑1 (MQ=255)
                                                                                                         gACGAGTGGAGAGTTTGACGACGATCTTCTCGAAGCCAAAAGTGCTGTACATATCATAGACTAAACGGATACATCCGTTAACTTCATCGCGAATTTGTTCTTCAGTACAGAAGATATGCGCGTCATCCTGGGTAAATCCACGCACGCGCATCAGGCCATGCAGCG‑AACCTGACGGCTCGTTACGGTGGCAGCTACCAAACTCGGCCATACGCAGCGGCAGATCGCGATAAGACTTCAGCCCCTGGTTGAAAATTTGTACGTGACCCGGGCAGTTCATCGGCTTAATGc                                                                                                                                                            <  2:610839/288‑1 (MQ=255)
                                                                                                          aCGAGTGGAGAGTTTGACGACGATCTTCTCGAAGCCAAAAGTGCTGTACATATCATAGACTAAACGGATACATCCGTTAACTTCATCGCGAATTTGTTCTTCAGTACAGAAGATATGCGCGTCATCCTGGGTAAATCCACGCACGCGCATCAGGCCATGCAGCG‑AACCTGACGGCTCGTTACGGTGGCAGCTACCAAACTCGGCCATACGCAGCGGCAGATCGCGATAAGACTTCAGCCCCTGGTTGAAAATTTGTACGTGACCCGGGCAGTTCATCGGCTTAATGc                                                                                                                                                            <  1:928849/287‑1 (MQ=255)
                                                                                                              gTGGAGAGTTTGACGACGATCTTCTCGAAGCCAAAAGTGCTGTACATATCATAAACTAAACGGATACATCCGTTAACTTCATCGCGAATTTGTTCTTCAGTACAGAAGATATGCGCGTCATCCTGGGTAAATCCACGCACGCGCATCAGGCCATGCAGCG‑AACCTGACGGCTCGTTACGGTGGCAGCTACCAAACTCGGCAAAAGCCACCGGCGGTTCGCGTTAAGACTTCAGCCCCTGGTTGAAAATTTGTACGTAACCCGGGAAGTTCATCGCCTTAATGAAgaa                                                                                                                                                        >  1:1565742/1‑285 (MQ=255)
                                                                                                                ggAGAGTTTGACGACGATCTTCTCGAAGCCAAAAGTGCTGTACATATCATAGACTAAACGGATACATCCGTTAACTTCATCGCGAATTTGTTCTTCAGTACAGAAGATATGCGCGTCATCCTGGGTAAATCCACGCACGCGCATCAGGCCATGCAGCG‑AACCTGACGGCTCGTTACGGTGGCAGCTACCAAACTCGGCCATACGCAGCGGCAGATCGCGATAAGACTTCAGCCCCTGGTTGAAAATTTGTACGTGACCCGGGCAGTTCATCGGCTTAATGCAGTATTCa                                                                                                                                                    <  1:1562625/289‑1 (MQ=255)
                                                                                                                        taacgacgATCTTCTAGAAGCCAAAAGTGCTGAACATCTCATAGACTAAACGGATACATCCGTTAACTTCATCGCGTATTTGTGCTTCAGTACAGAAGATATTCGCGTCATCCTGGGTAAATCCACGCACTCGCATCAGGCCGTGCAGCG‑AACCCTACGGTTCGTTCCGGTGGCATCTAACTAACTCTGCTGTCAGCAGCTGCAGATTGCGATCAGGCTACCGCCCCTGGTTGACAAGTTATACGTGCCCCGGGCAGGTCAACGGCTGAATGCAGTTTTCACGTTtcta                                                                                                                                            >  2:1411725/3‑288 (MQ=255)
                                                                                                                        tGACGACGATCTTCTCGAAGCCAAAAGTGCTGTACATATCATAGACTAAACGGATACATCCGTTAACTTCATCGCGAATTTGTTCTTCAGTACAGAAGATATGCGCGTCATCCTGGGTAAATCCACGCACGCGCATCAGGCCATGCAGCG‑AACCTGACGGCTCGTTACGGTGGCAGCTACCAAACTCGGCCATACGCAGCGGCAGATCGCGATAAGACTTCAGCCCCTGGTTGAAAATTTGTAc                                                                                                                                                                                         >  1:482574/1‑244 (MQ=255)
                                                                                                                        tGACGACGATCTTCTCGAAGCCAAAAGTGCTGTACATATCATAGACTAAACGGATACATCCGTTAACTTCATCGCGAATTTGTTCTTCAGTACAGAAGATATGCGCGTCATCCTGGGTAAATCCACGCACGCGCATCAGGCCATGCAGCG‑AACCTGACGGCTCGTTACGGTGGCAGCTACCAAACTCGGCCATACGCAGCGGCAGATCGCGATAAGACTTCAGCCCCTGGTTGAAAATTTGTAc                                                                                                                                                                                         <  2:482574/244‑1 (MQ=255)
                                                                                                                        tGACGACGATCTTCTCGAAGCCAAAAGTGCTGTACATATCATAGACTAAACGGATACATCCGTTAACTTCATCGCGAATTTGTTCTTCAGTACAGAAGATATGCGCGTCATCCTGGGTAAATCCACGCACGCGCATCAGGCCATGCAGCG‑AACCTGACGGCTCGTTACGGTGGCAGCTACCAAACTCGGCCATACGCAGCGGCAGATCGCGATAAGACTTCAGCCCCTGGTTGAAAATTTGTACGTGACCCGGGCAGTTCATCGGCTTAATGCAGTATTCACGGTtctc                                                                                                                                            >  1:1293123/1‑289 (MQ=255)
                                                                                                                              cgaTCTTCTCGAAGCCAAAAGTGCTGTACATATCATAGACTAAACGGATACATCCGTTAACTTCATCGCGAATTTGTTCTTCAGTACAGAAGATATGCGCGTCATCCTGGGTAAATCCACGCACGCGCATCAGGCCATGCAGCG‑AACCTGACGGCTCGTTACGGTGGCAGCTACCAAACTCGGCCATACGCAGCGGCAGATCGCGATAAGACTTCAGCCCCTGGTTGAAAATTTGTACGTGACCCGGGCAGTTCATCGGCTTAATGCAGTATTCACGGTTCTCagaag                                                                                                                                       <  1:1920789/288‑1 (MQ=255)
                                                                                                                                aTCTTCTCGAAGCCAAAAGTGCTGTACATATCATAGACTAAACGGATACATCCGTTAACTTCATCGCGAATTTGTTCTTCAGTACAGAAGATATGCGCGTCATCCTGGGTAAATCCACGCACGCGCATCAGGCCATGCAGCG‑AACCTGACGGCTCGTTACGGTGGCAGCTATCAAACTCGGCCATACGCAGCGGCAGATCGCGATAAGACTTCAGCCCCTCGTTGAAAAGATGTACGTGACCCGGGCAGTTCATCGTCTTAATTCAGTATTCACGGTTGTCAGTAGAtg                                                                                                                                    >  2:207634/1‑289 (MQ=255)
                                                                                                                                aTCTTCTCGAAGCCAAAAGTGCTGTACATATCATAGACTAAACGGATACATCCGTTAACTTCATCGCGAATTTGTTCTTCAGTACAGAAGATATGCGCGTCATCCTGGGTAAATCCACGCACGCGCATCAGGCCATGCAGCG‑AACCTGACGGCTCGTTACGGTGGCAGCTACCAAACTCGGCCATACGCAGCGGCAGAt                                                                                                                                                                                                                              >  1:706114/1‑199 (MQ=255)
                                                                                                                                aTCTTCTCGAAGCCAAAAGTGCTGTACATATCATAGACTAAACGGATACATCCGTTAACTTCATCGCGAATTTGTTCTTCAGTACAGAAGATATGCGCGTCATCCTGGGTAAATCCACGCACGCGCATCAGGCCATGCAGCG‑AACCTGACGGCTCGTTACGGTGGCAGCTACCAAACTCGGCCATACGCAGCGGCAGATCGCGATAAGACTTCAGCCCCTGGTTGAAAATTTGTACGTGACCCGGGCAGTTCATCGGCTTAATGc                                                                                                                                                            >  1:744164/1‑265 (MQ=255)
                                                                                                                                            ccAAAAGTGCTGTACATATCATAGACTAAACGGATACATCCGTTAACTTCATCGCGAATTTGTTCTTCAGTACAGAAGATATGCGCGTCATCCTGGGTAAATCCACGCACGCGCATCAGGCCATGCAGCG‑AACCTGACGGCTCGTTACGGTGGCAGCTACCAAACTCGGCCATACGCAGCGGCAGATCGCGATAAGACTTCAGCCCCTGGTTGAAAATTTGTACGTGACCCGGGCAGTTCATCGGCTTAATGCAGTATTCACGGTTCTCAGAAGATGTGGTGAACAtt                                                                                                                         >  2:1379804/1‑288 (MQ=255)
                                                                                                                                                      tGTACATATCATAGACTAAACGGATACATCCGTTAACTTCATCGCGAATTTGTTCTTCAGTACAGAAGATATGCGCGTCATCCTGGGTAAATCCACGCACGCGCATCAGGCCATGCAGCG‑AACCTGACGGCTCGTTACGGTGGCAGCTACCAAACTCGGCCATACGCAGCGGCAGATCGCGATAAGACTTCAGCCCCTGGTTGAAAATTTGTACGTGACCCGGGCAGTTCATCGGCTTAATGCAGTATTCACGGTTCTCAGAAGATGTGGTGAACATTGCATCTTTGTa                                                                                                              >  2:1964975/1‑289 (MQ=255)
                                                                                                                                                          cATATCATAGACTAAACGGATACATCCGTTAACTTCATCGCGAATTTGTTCTTCAGTACAGAAGATATGCGCGTCATCCTGGGTAAATCCACGCACGCGCATCAGGCCATGCAGCG‑AACCTGACGGCTCGTTACGGTGGCAGCTACCAAACTCGGCCATACGCAGCGGCAGATCGCGATAAGACTTCAGCCCCTGGTTGAAAATTTGTACGTGACCCGGGCAGTTCATCGGCTTAATGCAGTATTCACGGTTCTCAGAAGATGTGGTGAACAt                                                                                                                          <  1:830302/273‑1 (MQ=255)
                                                                                                                                                             ataaTAGACTAAACGGATACATCCGTTAACTTCATCGCGAATTTGTTCTTAAGTACAGAAGACATAAGCGTCATCCTGGGTAAATCCACGCACGCGCCTCACGCCATGCAGCC‑AACCTGACGGCTCGTTACGCTGGCAGCTACCAAAATCGGCCTTACGCAGCGGCAGATCCCGATATGACTTCAGCCCCCGGTTGAAAATTTGTACGAGACCCGGGCAGTTCCTCGGCTTAAAGCAGAATTCACCGTTCTCAGAAGATGAGACGAACGGTGCATCCTTGTAGTTgcc                                                                                                        >  2:1451333/4‑286 (MQ=255)
                                                                                                                                                             atCATAGACTAAACGGATACATCCGTTAACTTCATCGCGAATTTGTTCTTCAGTACAGAAGATATGCGCGTCATCCTGGGTAAATCCACGCACGCGCATCAGGCCATGCCGCG‑AACCTGACGGCTCGTTACGGTGGCAGCTACCAAACTCGGCCATACGCAGCGGCAGATCGCGATAAGACTTCAGCCCCTGGTTGAAAATTTGTACGTGACCCGGGCAGTTCATCGGCTTAATGCAGTATTCACGGTTCTCAGAAGGTTTGGTTAACATTTCATCTTTGTAGTTTTc                                                                                                        >  2:1693189/1‑288 (MQ=255)
                                                                                                                                                             atCATAGACTAAACGGATACATCCGTTAACTTCATCGCGAATTTGTTCTTCAGTACAGAAGATATGCGCGTCATCCTGGGTAAATCCACGCACGCGCATCAGGCCATGCAGCG‑AACCTGACGGCTCGTTACGGTGGCAGCTACCAAACTCGGCCATACGCAGCGGCAGATCGCGATAAGACTTCAGCCCCTGGTTGAAAATTTGTACGTGACCCGGGCAGTTCATCGGCTTAATGCCGTATTTACGGGTCCCAGAAGATGGTGTGAACATTTCATTCTTGTAGttttt                                                                                                        >  2:530118/1‑285 (MQ=255)
                                                                                                                                                             atCATAGACTAAACGGATACATCCGTTAACTTCATCGCGAATTTGTTCTTCAGTACAGAAGATATGCGCGTCATCCTGGGTAAATCCACGCACGCGCATCAGGCCATGCAGCG‑AACCTGACGGCTCGTTACGGTGGCAGCTACCAAACTCGGCCATACGCAGCGGCAGATCGCGATAAGACTTCAGCCCCTGGTTGAAAATTTGTACGTGACCCGGGCAGTTCATCGGCTTAATGCAGTATTCACGGTTCTCAGAAGATGTGGTGAACATTGCATCTTTGTAGTTGTc                                                                                                        >  2:1289720/1‑288 (MQ=255)
                                                                                                                                                             atCATAGACTAAACGGATACATCCGTTAACTTCATCGCGAATTTGTTCTTCAGTACAGAAGATATGCGCGTCATCCTGGGTAAATCCACGCACGCGCATCAGGCCATGCAGCG‑AACCTGACGGCTCGTTACGGTGGCAGCTACCAAACTCGGCCATACGCAGCGGCAGATCGCGATAAGACTTCAGCCCCTGGTTGAAAATTTGTACGTGACCCGGGCAGTTCATCGGCTTAATGCAGTATTCACGGTTCTCAGAAGATGTGGTGAACATTGCATCTTTGTAGTTGTc                                                                                                        >  2:901756/1‑288 (MQ=255)
                                                                                                                                                               cATAGACTAAACGGATACATCCGTTAACTTCATCGCGAATTTGTTCTTCAGTACAGAAGATATGCGCGTCATCCTGGGTAAATCCACGCACGCGCATCAGGCCATGCAGCG‑AACCTGACGGCTCGTTACGGTGGCAGCTACCAAACTCGGCCATACGCAGCGGCAGATCGCGATAAGACTTCAGCCCCTGGTTGAAAAtt                                                                                                                                                                                              >  1:1173055/1‑200 (MQ=255)
                                                                                                                                                                  aGACTAAACGGATACATCCGTTAACTTCATCGCGAATTTGTTCTTCAGTACAGAAGATATGCGCGTCATCCTGGGTAAATCCACGCACGCGCATCAGGCCATGCAGCG‑AACCTGACGGCTCGTTACGGTGGCAGCTACCAAACTCGGCCATACGCAGCGGCAGATCGCGATAAGACTTCAGCCCCTGGTTGAAAATTTGTACGTGAc                                                                                                                                                                                    >  2:1729255/1‑207 (MQ=255)
                                                                                                                                                                  aGACTAAACGGATACATCCGTTAACTTCATCGCGAATTTGTTCTTCAGTACAGAAGATATGCGCGTCATCCTGGGTAAATCCACGCACGCGCATCAGGCCATGCAGCG‑AACCTGACGGCTCGTTACGGTGGCAGCTACCAAACTCGGCCATACGCAGCGGCAGATCGCGATAAGACTTCAGCCCCTGGTTGAAAATTTGTACGTGACCCGGGCAGTTCATCGGCTTAATGCAGTATTCACGGTTCTCAGAAGATTTGGTGAACATTGCATCTTTGTTGTTTTCCCAGTg                                                                                                  >  2:942443/1‑289 (MQ=255)
                                                                                                                                                                  aGACTAAACGGATACATCCGTTAACTTCATCGCGAATTTGTTCTTCAGTACAGAAGATATGCGCGTCATCCTGGGTAAATCCACGCACGCGCATCAGGCCATGCAGCG‑AACCTGACGGCTCGTTACGGTGGCAGCTACCAAACTCGGCCATACGCAGCGGCAGATCGCGATAAGACTTCAGCCCCTGGTTGAAAATTTGTACGTGACCCGGGCAGTTCATCGGCTTAATGCAGTATTCACGGTTCTCAGAAGATGTGGTGAACATTGCATCTTTGTAGTTGTCGCAGTg                                                                                                  >  2:703873/1‑289 (MQ=255)
                                                                                                                                                                  aGACTAAACGGATACATCCGTTAACTTCATCGCGAATTTGTTCTTCAGTACAGAAGATATGCGCGTCATCCTGGGTAAATCCACGCACGCGCATCAGGCCATGCAGCG‑AACCTGACGGCTCGTTACGGTGGCAGCTACCAAACTCGGCCATACGCAGCGGCAGATCGCGATAAGACTTCAGCCCCTGGTTGAAAATTTGTACGTGACCCGGGCAGTTCATCGGCTTAATGCAGTATTCACGGTTCTCAGAAGATGTGGTGAACATTGCATCTTTGTAGTTGTCCCAGTg                                                                                                  >  1:10433/1‑289 (MQ=255)
                                                                                                                                                                  aGACTAAACGGATACATCCGTTAACTTCATCGCGAATTTGTTCTTCAGTACAGAAGATATGCGCGTCATCCTGGGTAAATCCACGCACGCGCATCAGGCCATGCAGCG‑AACCTGACGGCTCGTTACGGTGGCAGCTACCAAACTCGGCCATACGCAGCGGCAGATCGCGATAAGACTTCAGCCCCTGGTTGAAAATTTGTACGTGACCCGGGCAGTTCATCGGCTTAATGCAGTATTCACGGTTCTCAGAAGATGTGGTGAACATTGCATCTTTGTAGTTGTCCCAGTg                                                                                                  >  1:499504/1‑289 (MQ=255)
                                                                                                                                                                  aGACTAAACGGATACATCCGTTAACTTCATCGCGAATTTGTTCTTCAGTACAGAAGATATGCGCGTCATCCTGGGTAAATCCACGCACGCGCATCAGGCCATGCAGCG‑AACCTGACGGCTCGTTACGGTGGCAGCTACCAAACTCGGCCATACGCAGCGGCAGATCGCGATAAGACTTCAGCCCCTGGTTGAAAATTTGTACGTGACCCGGGCAGTTCATCGGCTTAATGCAGTATTCACGGTTCTCAGAAGATGTGGTGAACATTGCATCTTTGTAGTTGTCCCAGTg                                                                                                  >  1:1586014/1‑289 (MQ=255)
                                                                                                                                                                  aGACTAAACGGATACATCCGTTAACTTCATCGCGAATTTGTTCTTCAGTACAGAAGATATGCGCGTCATCCTGGGTAAATCCACGCACGCGCATCAGGCCATGCAGCG‑AACCTGACGGCTCGTTACGGTGGCAGCTAACAAACTCGGCCATACGCAGCGGCAGATCGCGATAAGACTTCAGCCCCTGGTTGAAAATTTGTACGTGACCCGGGCAGTTCATCGGCTTAATGCAGTATTCa                                                                                                                                                    <  1:1750140/239‑1 (MQ=255)
                                                                                                                                                                    aCTAAACGGATACATCCGTTAACTTCATCGCGAATTTGTTCTTCAGTACAGAAGATATGCGCGTCATCCTGGGTAAATCCACGCACGCGCATCAGGCCATGCAGCG‑AACCTGACGGCTCGTTACGGTGGCAGCTACCAAACTCGGCCATACGCAGCGGCAGATCGCGATAAGACTTCAGCCCCTGGTTGAAAATTTGTACGTGACCCGGGCAGTTCATCGGCTTAATGCAGTATTCACGGTTCTCAGAAGATGTGGTGAACATTGCATCTTTGTAGTTGTCCCAGTGa                                                                                                 >  1:1788344/1‑288 (MQ=255)
                                                                                                                                                                        aaCGGATACATCCGTTAACTTCATCGCGAATTTGTTCTTCAGTACAGAAGATATGCGCGTCATCCTGGGTAAATCCACGCACGCGCATCAGGCCATGCAGCG‑AACCTGACGGCTCGTTACGGTGGCAGCTACCAAACTCGGCCATACGCAGCGGCAGATCGCGATAAGACTTCAGCCCCTGGTTGAAAATTTGTACGTGACCCGGGCAGTTCATCGGCTTAATGCAGTATTCACGGTTCTCAGAAGATGTGGTGAACATTg                                                                                                                        >  2:1605383/1‑261 (MQ=255)
                                                                                                                                                                        aaCGGATACATCCGTTAACTTCATCGCGAATTTGTTCTTCAGTACAGAAGATATGCGCGTCATCCTGGGTAAATCCACGCACGCGCATCAGGCCATGCAGCG‑AACCTGACGGCTCGTTACGGTGGCAGCTACCAAACTCGGCCATACGCAGCGGCAGATCGCGATAAGACTTCAGCCCCTGGTTGAAAATTTGTACGTGACCCGGGCAGTTCATCGGCTTAATGCAGTATTCACGGTTCTCAGAAGATGTGGTGAACATTg                                                                                                                        <  1:1605383/261‑1 (MQ=255)
                                                                                                                                                                        aaCGGATACATCCGTTAACTTCATCGCGAATTTGTTCTTCAGTACAGAAGATATGCGCGTCATCCTGGGTAAATCCACGCACGCGCATCAGGCCATGCAGCG‑AACCTGACGGCTCGTTACGGTGGCAGCTACCAAACTCGGCCATACGCAGCGGCAGATCGCGATAAGACTTCAGCCCCTGGTTGAAAATTTGTACGTGACCCGGGCAGTTCATCGGCTTAATGCAGTATTCACGGTTCTCAGAAGATGTGGTGAACATTGCATCTTTGTAGTTGTCCCAGTGACCGGt                                                                                            >  1:1649030/1‑289 (MQ=255)
                                                                                                                                                                         aCGGATACATCCGTTAACTTCATCGCGAATTTGTTCTTCAGTACAGAAGATATGCGCGTCATCCTGGGTAAATCCACGCACGCGCATCAGGCCATGCAGCG‑AACCTGACGGCTCGTTACGGTGGCAGCTACCAAACTCGGCCATACGCAGCGGCAGATCGCGATAAGACTTCAGCCCCTGGTTGAAAATTTGTACGTGACCCGGGCAGTTCATCGGCTTAATGCAGTATTCACGGTTCTCAGAAGATgtggt                                                                                                                                >  2:1648772/1‑252 (MQ=255)
                                                                                                                                                                             aTACATCCGTTAACTTCATCGCGAATTTGTTCTTCAGTACAGAAGATATGCGCGTCATCCTGGGTAAATCCACGCACGCGCATCAGGCCATGCAGCG‑AACCTGACGGCTCGTTACGGTGGCAGCTACCAAACTCGGCCATACGCAGCGGCAGATCGCGATAAGACTTCAGCCCCTGGTTGAAAATTTGTACGTGACCCGGGCAGTTCATCGGCTTAATGCAGTATTCACGGTTCTCAGAAGATGTGGTGAACATTGCATCTTTGTAGTTGTCCCAGTGACCGGttttt                                                                                        <  1:1182516/288‑1 (MQ=255)
                                                                                                                                                                             aTACATCCGTTAACTTCATCGCGAATTTGTTCTTCAGTACAGAAGATATGCGCGTCATCCTGGGTAAATCCACGCACGCGCATCAGGCCATGCAGCG‑AACCTGACGGCTCGTTACGGTGGCAGCTACCAAACTCGGCCATACGCAGCGGCAGATCGCGATAAGACTTCAGCCCCTGGTTGAAAATTTGTACGTGACCCGGGCAGTTCATCGGCTTAATGCAGTATTCACGGTTCTCAGAAGATGTGGTGAACATTGCATCTTTGTAGTTGTCCCAGTGACCGGttttt                                                                                        >  1:26057/1‑288 (MQ=255)
                                                                                                                                                                                 aTCCGTTAACTTCATCGCGAATTTGTTCTTCAGTACAGAAGATATGCGCGTCATCCTGGGTAAATCCACGCACGCGCATCAGGCCATGCAGCG‑AACCTGACGGCTCGTTACGGTGGCAGCTACCAAACTCGGCCATACGCAGCGGCAGATCGCGATAAGACTTCAGCCCCTGGTTGAAAATTTGTACGTGACCCGGGCAGTTCATCGGCTTAATGCAGTATTCACGGTTCTCAGAAGATGTGGTGAACATTGCATCTTTGTAGTTGTCCCAGTGACCGGTTTTTTCCca                                                                                   <  1:899328/289‑1 (MQ=255)
                                                                                                                                                                                 aTCCGTTAACTTCATCGCGAATTTGTTCTTCAGTACAGAAGATATGCGCGTCATCCTGGGTAAATCCACGCACGCGCATCAGGCCATGCAGCG‑AACCTGACGGCTCGTTACGGTGGCAGCTACCAAACTCGGCCATACGCAGCGGCAGATCGCGATAAGACTTCAGCCCCTGGTTGAAAATTTGTACGTGACCCGGGCAGTTCATCGGCTTAATGCAGTATTCACGGTTCTCAGAAGATGTGGTGAACATTGCATCTTTGTAGTTGTCCCAGTGACCGGTTTTTTCCca                                                                                   <  1:1455674/289‑1 (MQ=255)
                                                                                                                                                                                  tCCGTTAACTTCATCGCGAATTTGTTCTTCAGTACAGAAGATATGCGCGTCATCCTGGGTAAATCCACGCACGCGCATCAGGCCATGCAGCG‑AACCTGACGGCTCGTTACGGTGGCAGCTACCAAACTCGGCCATACGCAGCGGCAGATCGCGATAAGACTTCAGCCCCTGGTTGAAAATTTGTACGTGACCCGGGCAGTTCATCGGCTTAATGCAGTATTCACGGTTCTCAGAAGATGTGGTGAACATTGCATCTTTGTAGTTg                                                                                                          >  1:1341453/1‑265 (MQ=255)
                                                                                                                                                                                      ttAACTTCATCGCGAATTTGTTCTTCAGTACAGAAGATATGCGCGTCATCCTGGGTAAATCCACGCACGCGCATCAGGCCATGCAGCG‑AACCTGACGGCTCGTTACGGTGGCAGCTACCAAACTCGGCCATACGCAGCGGCAGATCGCGATAAGACTTCAGCCCCTGGTTGAAAATTTGTACGTGACCCGGGCAGTTCATCGGCTTAATGCAGTATTCACGGTTCTCAGAAGATGTGGTGAACATTGCATCTTTGTAGTTGTCCCAGTGACCGGTTTTTTCCCACAgg                                                                               >  1:1262570/1‑288 (MQ=255)
                                                                                                                                                                                       tAACTTCATCGCGAATTTGTTCTTCAGTACAGAAGATATGCGCGTCATCCTGGGTAAATCCACGCACGCGCATCAGGCCATGCAGCG‑AACCTGACGGCTCGTTACGGTGGCAGCTACCAAACTCGGCCATACGCAGCGGCAGATCGCGATAAGACTTCAGCCCCTGGTTGAAAATTTGTACGTGACCCGGGCAGTTCATCGGCTTAATGCAGTATTCACGGTTCTCAGAAGATGTGGTGAACATTGCATCTTTGTAGTTGTCCCAGTGACCGGTTTTTTCCCACAGGac                                                                             >  1:689902/1‑289 (MQ=255)
                                                                                                                                                                                        aaCTTCGTCGCGAATTGGTCCTTCAGTACAGAAGATATGCGCGTCATCCTGGGTAAATCCACGCACGCGCATCAGGCCATGCAGCG‑AACCTGACGGCTCGTTACGGTGGCAGCTACCAAACTCGGCCATACGCAGCGGCAGATCGCGATAAGACTTCAGCCCCTGGTTGAAAATTTGTACGTGACCCGGGCAGTTCATCGGCTTAATGCAGTATTCACGGTTCTCAGAAGATGTGGTGAACATTGCATCTTTGTAGTTGTCCCAGTGACCGGTTTTTTCCCACAGGaca                                                                            <  2:436763/289‑1 (MQ=255)
                                                                                                                                                                                        aaCTTCATCGCGAATTTGTTCTTCAGTACAGAAGATATGCGCGTCATCCTGGGTAAATCCACGCACGCGCATCAGGCCATGCAGCG‑AACCTGACGGCTCGTTACGGTGGCAGCTACCAAACTCGGCCATACGCAGCGGCAGATCGCGATAAGACTTCAGCCCCTGGTTGAAAATTTGTACGTGACCCGGGCAGTTCATCGGCTTAATGCAGTATTCACGGTTCTCAGAAGATGTGGTGAACATTGCATCTTTGTAGTTGTCCCAGTGACCGGTTTTTTCCCACAGGaca                                                                            <  2:867821/289‑1 (MQ=255)
                                                                                                                                                                                        aaCTTCATCGCGAATTTGTTCTTCAGTACAGAAGATATGCGCGTCATCCTGGGTAAATCCACGCACGCGCATCAGGCCATGCAGCG‑AACCTGACGGCTCGTTACGGTGGCAGCTACCAAACTCGGCCATACGCAGCGGCAGATCGCGATAAGACTTCAGCCCCTGGTTGAAAATTTGTACGTGACCCGGGCAGTTCATCGGCTTAATGCAGTATTCACGGTTCTCAGAAGATGTGGTGAACATTGCATCTTTGTAGTTGTCCCAGTGACCGGTTTTTTCCCACAGGaca                                                                            <  1:8706/289‑1 (MQ=255)
                                                                                                                                                                                            tCATCGCGATTGTGTTCTTCAGGCCGGAAGTAAGGGGCGTCGTCCTGGGGAAATCCACGCCCGCGCATCAGGCCTTGCAGCG‑AACCTGCCGGCTCGTTACGGTGGCAGCTACCAAACTCGGCCATACGCAGCGGCAGATCGCGATAAGACTTCAGCCCCTGGTTGAAAATTTGTACGTGACCCGGGCAGTTCATCGGCTTAATGCAGTATTCACGGTTCTCAGAAGATGTGGTGAACATTGCATCTTTGTAGTTGTCCCAGTGACCGGTTTTTTCCCACAGGACACGGt                                                                        <  2:10433/289‑1 (MQ=255)
                                                                                                                                                                                             cagcgcgAATTTGTTCTTCAGTACAGAAG‑TCTGCGCGTCATCCGGGGTAAATCCACGAACGCGCATCAGGCCATGCAGCG‑AACCTGACGGCTCGTTACGGTGGCAGCTACCAAACTCGGCCATACGCAGCGGCAGATCGCGATAAGACTTCAGCCCCTGGTTGAAAATTTGTACGTGACCCGGGCAGTTCATCGGCTTAATGCAGTATTCACGGTTCTCAGAAGATGTGGTGAACATTGCATCTTTGTAGTTGTCCCAGTGACCGGTTTTTTCCCACAGGACACGGTcc                                                                      <  2:1178124/286‑1 (MQ=255)
                                                                                                                                                                                              aTCGCGAATTTGTTCTTCAGTACAGAAGATATGCGCGTCATCCTGGGTAAATCCACGCACGCGCATCAGGCCATGCAGCG‑AACCTGACGGCTCGTTACGGTGGCAGCTACCAAACTCGGCCATACGCAGCGGCAGATCGCGATAAGACTTCAGCCCCTGGTTGAAAATTTGTACGTGACCCGGGCAGTTCATCGGCTTAATGCAGTATTCACGGTTCTCAGAAGATGTGGTGAACATTGCATCTTTGTAGTTGTCCCAGTGACCGGTTTTTTTCCACAGGCCACGGTc                                                                       >  2:1439875/1‑288 (MQ=255)
                                                                                                                                                                                                cgcgAATTTGTTCTTCAGTACAGAAGATATGCGCGTCATCCTGGGTAAATCCACGCACGCGCATCAGGCCATGCAGCG‑AACCTGACGGCTCGTTACGGTGGCAGCTACCAAACTCGGCCATACGCAGCGGCAGATCGCGATAAGACTTCAGCCCCTGGTTGAAAATTTGTACGTGACCCGGGCAGTTCATCGGCTTAATGCAGTATTCACGGTTCTCAGAAGATGTGGTGAACATTGCATCTTTGTAGTTGTCCCAGTGACCGGTTTTTTc                                                                                      >  1:431466/1‑271 (MQ=255)
                                                                                                                                                                                                cgcgAATTTGTTCTTCAGTACAGAAGATATGCGCGTCATCCTGGGTAAATCCACGCACGCGCATCAGGCCATGCAGCG‑AACCTGACGGCTCGTTACGGTGGCAGCTACCAAACTCGGCCATACGCAGCGGCAGATCGCGATAAGACTTCAGCCCCTGGTTGAAAATTTGTACGTGACCCGGGCAGTTCATCGGCTTAATGCAGTATTCACGGTTCTCAGAAGATGTGGTGAACATTGCATCTTTGTAGTTGTCCCAGTGACCGGTTTTTTCCCACAGGACACGGTCca                                                                     >  1:956062/1‑288 (MQ=255)
                                                                                                                                                                                                 gcgAATTTGTTCTTCAGTACAGAAGATATGCGCGTCATCCTGGGTAAATCCACGCACGCGCATCAGGCCATGCAGCG‑AACCTGACGGCTCGTTACGGTGGCAGCTACCAAACTCGGCCATACGCAGCGGCAGATCGCGATAAGACTTCAGCCCCTGGTTGAAAATTTGTACGTGACCCGGGCAGTTCATCGGCTTAATGCAGTATTCACGGTTCTCAGAAGATGTGGTGAACATTGCATCTTTGTAGTTGTCCCAGTGACCGGTTTTTTCCCACAGGACACGGTCcatc                                                                   <  1:1895872/289‑1 (MQ=255)
                                                                                                                                                                                                      ttttttCTTGAGTACAGAAGACATGCCCCTCATCCTGGGTAAATCCACGCACGCGCATCAGGCCATGCAGCG‑AACCTGACGGCTCGTTACGGTGGCAGCTACCAAACTCGGCCATACGCAGCGGCAGATCGCGATAAGACTTCAGCCCCTGGTTGAAAATTTGTACGTGACCCGGGCAGTTCATCGGCTTAATGCAGTATTCACGGTTCTCAGAAGATGTGGTGAACATTGCATCTTTGTAGTTGTCCCAGTGACCGGTTTTTTCCCACAGGACACGGTCCATCATGaa                                                              <  2:689902/289‑1 (MQ=255)
                                                                                                                                                                                                       ttGTTCTTCAGTACAGAAGATATGCGCGTCATCCTGGGTAAATCCACGCACGCGCATCAGGCCATGCAGCG‑AACCTGACGGCTCGTTACGGTGGCAGCTACCAAACTCGGCCATACGCAGCGGCAGATCGCGATAAGACTTCAGCCCCTGGTTGAAAATTTGTACGTGACCCGGGCAGTTCATCGGCTTAATGCAGTATTCACGGTTCTCAGAAGATGTGGTGAACATTGCATCTTTGTAGTTGTCCCAGTGACCGGTTTTTTCCCACAGGACACGGTCCATCATGAAc                                                             <  2:281582/289‑1 (MQ=255)
                                                                                                                                                                                                        tGTTCTTCAGTACAGAAGATATGCGCGTCATCCTGGGTAAATCCACGCACGCGCATCAGGCCATGCAGCG‑AACCTGACGGCTCGTTACGGTGGCAGCTACCAAACTCGGCCATACGCAGCGGCAGATCGCGATAAGACTTCAGCCCCTGGTTGAAAATTTGTACGTGACCCGGGCAGTTCATCGGCTTAATGCAGTATTCACGGTTCTCAGAAGATGTGGTGAACATTGCATCTTTGTAGTTGTCCCAGTGACCGGTTTTTTCCCACAGGACACGGTCCATCATGAACg                                                            <  1:544239/289‑1 (MQ=255)
                                                                                                                                                                                                                   aCAGAAGATATGCGCGTCATCCTGGGTAAATCCACGCACGCGCATCAGGCCATGCAGCG‑AACCTGACGGCTCGTTACGGTGGCAGCTACCAAACTCGGCCATACGCAGCGGCAGATCGCGATAAGACTTCAGCCCCTGGTTGAAAATTTGTACGTGACCCGGGCAGTTCATCGGCTTAATGCAGTATTCACGGTTCTCAGAAGATGTGGTGAACATTGCATCTTTGTAGTTGTCCCAGTGACCGGTTTTTTCCCACAGGACACGGTCCATCATGAACGGACCTTTaa                                                   <  1:1964975/287‑1 (MQ=255)
                                                                                                                                                                                                                   aCAGAAGATATGCGCGTCATCCTGGGTAAATCCACGCACGCGCATCAGGCCATGCAGCG‑AACCTGACGGCTCGTTACGGTGGCAGCTACCAAACTCGGCCATACGCAGCGGCAGATCGCGATAAGACTTCAGCCCCTGGTTGAAAATTTGTACGTGACCCGGGCAGTTCATCGGCTTAATGCAGTATTCACGGTTCTCAGAAGATGTGGTGAACATTGCATCTTTGTAGTTGTCCCAGTGACCGGTTTTTTCCCACAGGACACGGTCCATCATGAACGGACCTTTaa                                                   <  2:1743389/287‑1 (MQ=255)
                                                                                                                                                                                                                   aCAGAAGATATGCGCGTCATCCTGGGTAAATCCACGCACGCGCATCAGGCCATGCAGCG‑AACCTGACGGCTCGTTACGGTGGCAGCTACCAAACTCGGCCATACGCAGCGGCAGATCGCGATAAGACTTCAGCCCCTGGTTGAAAATTTGTACGTGACCCGGGCAGTTCATCGGCTTAATGCAGTATTCACGGTTCTCAGAAGATGTGGTGAACATTGCATCTTTGTAGTTGTCCCAGTGACCGGTTTTTTCCCACAGGACACGGTCCATCATGAACGGACCTTTaa                                                   <  1:1379804/287‑1 (MQ=255)
                                                                                                                                                                                                                       aagaTATGCGCGTCATCCTGGGTAAATCCACGCACGCGCATCAGGCCATGCAGCG‑AACCTGACGGCTCGTTACGGTGGCAGCTACCAAACTCGGCCATACGCa                                                                                                                                                                                                                                       <  2:1488532/103‑1 (MQ=255)
                                                                                                                                                                                                                       aagaTATGCGCGTCATCCTGGGTAAATCCACGCACGCGCATCAGGCCATGCAGCG‑AACCTGACGGCTCGTTACGGTGGCAGCTACCAAACTCGGCCATACGCAGCGGCAGATCGCGATAAGACTTCAGCCCCTGGTTGCAAATTTGTACGTGACCCGGGCAGTTCATCGGCTTAATGCAGTATTCACGGTTCTCAGAAGATGTGGTGAACATTGCATCTTTGTAGTTGTCCCAGTGACCGGTTTTTTCCCACAGGAAACGGTCCATCATGAACGGACCTTTAACtt                                                >  1:1020131/1‑286 (MQ=255)
                                                                                                                                                                                                                       aagaTATGCGCGTCATCCTGGGTAAATCCACGCACGCGCATCAGGCCATGCAGCG‑AACCTGACGGCTCGTTACGGTGGCAGCTACCAAACTCGGCCATACGCAGCGGCAGATCGCGATAAGACTTCAGCCCCTGGTTGAAAATTTGTACGTGACCCGGGCAGTTCATCGGCTTAATGCAGTATTCACGGTTCTCAGAAGATGTGGTGAACATTGCATCTTTGTAGTTGTCCCAGTGACCGGTTTTTTCCCACAGGACACGGTCCATCATGAACGGACCTTTAACTTCCt                                             >  1:1496468/1‑289 (MQ=255)
                                                                                                                                                                                                                         tataagggacgacaccTGTGTAAATCCACGCACGCGAATAAGGCCAGGCAGCG‑AACATGACGGCTCGTTACGGGGGCAGCTACCAAACTCGGCCATACGCAGCGGCAGATCGCGATAAGACTTCAGCCCCTGGTTGAAAATTTGTACGTGACCCGGGCAGTTCATCGGCTTAATGCAGTATTCACGGTTCTCAGAAGATGTGGTGAACATTGCATCTTTGTAGTTGTCCCAGTGACCGGTTTTTTCCCACAGGACACGGTCCATCATGAACGGACCTTTAACTTCCTGa                                           <  2:1789443/275‑1 (MQ=255)
                                                                                                                                                                                                                         gaTATGCGCGTCATCCTGGGTAAATCCACGCACGCGCATCAGGCCATGCAGCG‑AACCTGACGGCTCGATACGGTGGCAGCTACCAAACGCGGCCATACGCAGCGCCAGATCGCGATAAGACTTCAGCCCCTGGTTGAAAATTTGTACGTGACCCGGGCAGTTCATCGGCTTAATGCAGTATTCACGGTTCTCGGAAGATATGGTAAACATTGCATCCTTGTATTTGTCCCAGTGACCGGTTGTTTACCACAGGACACGGTCCATCATAAACGGACCTTTAACTTCCtta                                           >  2:1242304/1‑287 (MQ=255)
                                                                                                                                                                                                                            atGCGCGTCATCCTGGGTAAATCCACGCACGCGCATCAGGCCATGCAGCG‑AACCTGACGGCTCGTTACGGTGGCAGCTACCAAACTCGGCCATACGCAGCGGCAGATCGCGATAAGACTTCAGCCCCTGGTTGAAAATTTGTACGTGACCCGGGCAGTTCATCGGCTTCATGCAGTATTCACGGTTCTCAGAAGATGTGGTGAACATTGCATCTTTGTAGTTGTCCCAGTGACCGGATCTTTCCCCCAGTACACGGTCCATCATGAACGGACCTTTAAATTCATGATa                                         >  2:1276308/1‑288 (MQ=255)
                                                                                                                                                                                                                              gcgcGTCATCCTGGGTAAATCCACGCACGCGCATCAGGCCATGCAGCG‑AACCTGACGGCTCGTTACGGTGGCAGCTACCAAACTCGGCCATACGCAGCGGCAGATCGCGATAAGACTTCAGCCCCTGGTTGAAAATTTGTACGTGACCCGGGCAGTTCATCGGCTTAATGCAGTATTCACGGTTCTCAGAAGATGTGGTGAACATTGCATCTTTGTAGTTGTCCCAGTGACCGGTTTTTTCCCACAGGACACGGTCCATCATGAACGGACCTTTaa                                                   >  2:1547453/1‑276 (MQ=255)
                                                                                                                                                                                                                                 cgTCATCCTGGGTAAATCCACGCACGCGCATCAGGCCATGCAGCG‑AACCTGACGGCTCGTTACGGTGGCAGCTACCAAACTCGGCCATACGCAGCGGCAGATCGCGATAAGACTTCAGCCCCTGGTTGAAAATTTGTACGTGACCCGGGCAGTTCATCGGCTTAATGCAGTATTCACGGTTCTCAGAAGATGTGGTGAACATTGCATCtt                                                                                                                  <  1:1730350/210‑1 (MQ=255)
                                                                                                                                                                                                                                 cgTCATCCTGGGTAAATCCACGCACGCGCATCAGGCCATGCAGCG‑AACCTGACGGCTCGTTACGGTGGCAGCTACCAAACTCGGCCATACGCAGCGGCAGATCGCGATAAGACTTCAGCCCCTGGTTGAAAATTTGTACGTGACCCGGGCAGTTCATCGGCTTAATGCAGTATTCACGGTTCTCAGAAGATGTGGTGAACATTGCATCTTTGTAGTTGTCCCAGTGACCGGTTTTTTCCca                                                                                   >  1:292272/1‑241 (MQ=255)
                                                                                                                                                                                                                                 cgTCATCCTGGGTAAATCCACGCACGCGCATCAGGCCATGCAGCG‑AACCTGACGGCTCGTTACGGTGGCAGCTACCAAACTCGGCCATACGCAGCGGCAGATCGCGATAAGACTTCAGCCCCTGGTTGAAAATTTGTACGTGACCCGGGCAGTTCATCGGCTTAATGCAGTATTCACGGTTCTCAGAAGATGTGGTGAACATTGCATCTTTGTAGTTGTCCCAGTGACCGGGTTTTTCCCACAGGACACGGTCCATCATGAACGGACCTTTAACTTCCTGATACTGGt                                    >  2:545633/1‑288 (MQ=255)
                                                                                                                                                                                                                                 cgTCATCCTGGGTAAATCCACGCACGCGCATCAGGCCATGCAGCG‑AACCTGACGGCTCGTTACGGTGGCAGCTACCAAACTCGGCCATACGCAGCGGCAGATCGCGATAAGACTTCAGCCCCTGGTTGAAAATTTGTACGTGACCCGGGCAGTTCATCGGCGTAATGCAGTATTCACGGTTCTCAGAAGATGTGGTGAACATTGCATCTTTGTAGTTGTCCCAGTGACTGGGTTTTTCCCACAGGACACGCTCCATCATGAATGGACCTTTAACTTCCTGTTACTGGt                                    >  2:156475/1‑288 (MQ=255)
                                                                                                                                                                                                                                  gTCATCCTGGGTAAATCCACGCACGCGCATCAGGCCATGCAGCG‑AACCTGACGGCTCGTTACGGTGGCAGCTACCAAACTCGGCCATACGCAGCGGCAGATCGCGATAAGACTTCAGCCCCTGGTTGAAAATTTGTACGTGACCCGGGCAGTTCATCGGCTTAATGCAGTATTCACGGTTCTCAGAAGATGTGGTGAACATTGCATCTTTGTAGTTGTCCCAGTGACCGGTTTTTTCCCACAGGACACGGTCCATCATGAACGGACCTTTAACTTCCTGATACTGGTa                                   <  2:26057/288‑1 (MQ=255)
                                                                                                                                                                                                                                     aTCCTGGGTAAATCCACGCACGCGCATCAGGCCATGCAGCG‑AACCTGACGGCTCGTTACGGTGGCAGCTACCAAACTCGGCCATACGCAGCGGCAGATCGCGATAAGACTTCAGCCCCTGGTTGAAAATTTGTACGTGACCCGGGCAGTTCATCGGCTTAATGCAGTATTCACGGTTCTCAGAAGATGTGGTGAACATTGCATCTTTGTAGTTGTCCCAGTGACCGGTTTTTTCCCACAGGACACGGTCCATCATGAACGGACCTTTAACTTCCTGATACTGGTActct                               >  2:842086/1‑289 (MQ=255)
                                                                                                                                                                                                                                                aTCCACGCACGCGCATCAGGCCCTGCAGCG‑AACCTGACGGCTCGTTACGGTGGCAGCTACCACACTCGGCCATACGCAGCGGCAGATCGCGCTAAGACGTCAGCCCCTGGTTGAAAATTTGTACGTGACCCGGGCAGTTCATCGGCTTAATGCAGTATACACGGTTATCAGAAGATGTGGTGAACATTGCATCTTTGTAGTTGTCCCAGTGACCGGTTTTTTCCCACGGCACACGGTCCATCATGAACGTACCTTTAACTTCCTGATACTGGTACCCTTTCCGTTTaaa                    >  2:792305/1‑287 (MQ=255)
                                                                                                                                                                                                                                                aTCCACGCACGCGCATCAGGCCATGCAGCG‑AACCTGACGGCTCGTTACGGTGGCAGCTACCAAACTCGGCCATACGCAGCGGCAGATCGCGATAAGACTTCAGCCCCTGGTTGAAAATTTGTACGTGACCCGGGCAGTTCATCGGCTTAATGCAGTATTCACGGTTCTCAGAAGATGTGGTGAACATTGCATCTTTGTAGTTGTcc                                                                                                       >  1:763346/1‑206 (MQ=255)
                                                                                                                                                                                                                                                aTCCACGCACGCGCATCAGGCCATGCAGCG‑AACCTGACGGCTCGTTACGGTGGCAGCTACCAAACTCGGCCATACGCAGCGGCAGATCGCGATAAGACTTCAGCCCCTGGTTGAAAATTTGTACGTGACCCGGGCAGTTCATCGGCTTAATGCAGTATTCACGGTTCTCAGAAGATGTGGTGAACATTGCATCTTTGTAGTTGTcc                                                                                                       <  2:763346/206‑1 (MQ=255)
                                                                                                                                                                                                                                                aTCCACGCACGCGCATCAGGCCATGCAGCG‑AACCTGACGGCTCGTTACGGTGGCAGCTACCAAACTCGGCCATACGCAGCGGCAGATCGCGATAAGACTTCAGCCCCTGGTTGAAAATTTGTACGTGACCCGGGCAGTTCATCGGCTTAATGCAGTATTCACGGTTCTCAGAAGATGTGGTGAACATTGCATCTTTGTAGTTGTCCCAGTGACCGGTTTTTTCCCACAGGACACGGTCCATCATGAACGGACCTTTAACTTCCTGATACTGGTACTCTTTCAGTTTAga                    <  1:995544/289‑1 (MQ=255)
                                                                                                                                                                                                                                                aTCCACGCACGCGCATCAGGCCATGCAGCG‑AACCTGACGGCTCGTTACGGTGGCAGCTACCAAACTCGGCCATACGCAGCGGCAGACCGCGATAAGACTTCAGCCCCTGGTTGAAAATTTGTACGTGACCCGGGCAGTTCATCGGCTTAATGCAGTATTCACGGTTCTCAGAAGATGTGGTGAACATTGCATCTTTGTAGTTGTCCCAGTGACCGGTTTTTTCCCACAGGACACGGTCCATCATGAACGGACCTTTAACTTCCTGATACTGGTACTCTTTCAGTTTAga                    >  1:1879425/1‑289 (MQ=255)
                                                                                                                                                                                                                                                 tCCACGCACGCGCATCAGGCCATGCAGCG‑AACCTGACGGCTCGTTACGGTGGCAGCTACCAAACTCGGCCATACGCAGCGGCAGATCGCGATAAGACTTCAGCCCCTGGTTGAAAATTTGTACGTGACCCGGGCAGTTCATCGGCTTAATGCAGTATTCACGGTTCTCAGAAGATGTGGTGAACATTGCATCTTTGTAGTTGTCCCAGTGACCGGTTTTTTCCCACAGGACACGGTCCATCATGAACGGACCTTTAACTTCCTGATACTGGTACTCTTTCAGTTTAgaa                   <  2:1503469/289‑1 (MQ=255)
                                                                                                                                                                                                                                                 cccACGCCCCCGCATCAGGCCATG‑AGGCGAACCGGACGGGTCGTTACGTTGGCAGCTACCAGACTCGGCCATACCAAGCGGCAGAGCGCGATAAGACTTGAGCCCCTGGTTGAAAATGTGTACGTGACCCGGGCAGTTCATCGGCTTAATGCAGTATTCTCGGTTCTCAGAAGATGTGGTGAACATTGCATCTTTGTAGTTGTCCCAGTGTCCGGGTTTTTCCCACAGTACACGGTCCATCATGAACGGACCTTTAACTTCCTGATACTGGTACTCTTTCAGTTTAgaa                   <  2:1372044/288‑1 (MQ=255)
                                                                                                                                                                                                                                                     cgcacgcGCATCAGGCCATGCAGCG‑AACCTGACGGCTCGTTACGGTGGCAGCTACCAAACTCGGCCATACGCAGCGGCAGATCGCGATAAGACTTCAGCCCCTGGTTGAAAATTTGTACGTGACCCggg                                                                                                                                                                               >  2:1884147/1‑129 (MQ=255)
                                                                                                                                                                                                                                                     cgcacgcGCATCAGGCCATGCAGCG‑AACCTGACGGCTCGTTACGGTGGCAGCTACCAAACTCGGCCATACGCAGCGGCAGATCGCGATAAGACTTCAGCCCCTGGTTGAAAATTTGTACGTGACCCGGGCAGTTCATCGGCTTAATGCAGTATTCACGGTTCTCAGAAGATGTGGTGAACATTg                                                                                                                        <  1:277727/184‑1 (MQ=255)
                                                                                                                                                                                                                                                     cgcacgcGCATCAGGCCATGCAGCG‑AACCTGACGGCTCGTTACGGTGGCAGCTACCAAACTCGGCCATACGCAGCGGCAGATCGCGATAAGACTTCAGCCCCTGGTTGAAAATTTGTACGTGACCCGGGCAGTTCATCGGCTTAATGCAGTATTCACGGTTCTCAGAAGATGTGGTGAACATTGCATCTTTGTAGTTGTCCCAGTGACCGGTTTTTTCCCACAGGACACGGTCCATCATGAACGGACCTTTAACTTCCTGATACTGGTACTCTTTCAGTTTAgaacga                >  1:1684340/1‑288 (MQ=255)
                                                                                                                                                                                                                                                               tCAGGCCATGCAGCG‑AACCTGACGGCTCGTTACGGTGGCAGCTACCAAACTCGGCCATACGCAGCGGCAGATCGCGATAAGACTTCAGCCCCTGGTTGAAAATTTGTACGTGACCCGGGCAGTTCATCGGCTTAATGCAGTATTCACGGTTCTCAGAAGATGTGGTGAACATTGc                                                                                                                       >  1:1943694/1‑175 (MQ=255)
                                                                                                                                                                                                                                                               tCAGGCCATGCAGCG‑AACCTGACGGCTCGTTACGGTGGCAGCTACCAAACTCGGCCATACGCAGCGGCAGATCGCGATAAGACTTCAGCCCCTGGTTGAAAATTTGTACGTGACCCGGGCAGTTCATCGGCTTAATGCAGTATTCACGGTTCTCAGAAGATGTGGTGAACATTGc                                                                                                                       <  2:1943694/175‑1 (MQ=255)
                                                                                                                                                                                                                                                               tCAGGCCATGCAGCG‑AACCTGACGGCTCGTTACGGTGGCAGCTACCAAACTCGGCCATACGCAGCGGCAGATCGCGATAAGACTTCAGCCCCTGGTTGAAAATTTGTACGTGACCCGGGCAGTTCATCGGCTTAATGCAGTATTCACGGTTCTCAGAAGATGTGGTGAACATTGCATCTTTGTAGTTGTCCCAGTGACCGGTTTTTTCCCACAGGACACGGTCCATCATGAACGGACCTTTAACTTCCTGATACTGGTACTCTTTCAGTTTAGAACGAACAAACACTTc     <  1:856164/289‑1 (MQ=255)
                                                                                                                                                                                                                                                                  ggCCATGCAGCG‑AACCTGACGGCTCGTTACGGTGGCAGCTACCAAACTCGGCCATACGCAGCGGCAGATCGCGATAAGACTTCAGCCCCTGGTTGAAAATTTGTACGTGACCCGGGCAGTTCATCGGCTTAATGCAGTATTCACGGTTCTCAGAAGATGTGGTGAACATTGCATCTTTGTAGTTGTCCCAGTGACCGGTTTTTTCCCACAGGACACGGTCCATCATGAACGGACCTTTAACTTCCTGATACTGGTACTCTTTCAGTTTAGAACGAACAAACACTTCCAg  >  2:534739/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                            ||||                                                                                                                                                                                                                                                                                    
CTTCACCCAGTTGATATTCAAACGGGATGTTGTTTTCTTCCAGCGCAACCGCCAGGTCCGCCTCAGCACGATCCCACATTTCGTCGCTGCCAATACGTTTTTCAGGACGAGTGGAGAGTTTGACGACGATCTTCTCGAAGCCAAAAGTGCTGTACATATCATAGACTAAACGGATACATCCGTTAACTTCATCGCGAATTTGTTCTTCAGTACAGAAGATATGCGCGTCATCCTGGGTAAATCCACGCACGCGCATCAGGCCATGCAGGC‑TACCACTCGGCTCGTTACGGTGGCAGCTACCAAACTCGGCCATACGCAGCGGCAGATCGCGATAAGACTTCAGCCCCTGGTTGAAAATTTGTACGTGACCCGGGCAGTTCATCGGCTTAATGCAGTATTCACGGTTCTCAGAAGATGTGGTGAACATTGCATCTTTGTAGTTGTCCCAGTGACCGGTTTTTTCCCACAGGACACGGTCCATCATGAACGGACCTTTAACTTCCTGATACTGGTACTCTTTCAGTTTAGAACGAACAAACACTTCCAG  >  CP042583/1483147‑1483693

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A