Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A3 F210 I1 R1 4927 250.2 4002508 96.7% 3870425 266.6

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA CP042583 1,539,163 3 bp→CGA intergenic (–/–) – / – –/–

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0425831,539,1630GC99.7% 750.0 / NA 313intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base G (0/1);  new base C (146/166);  total (146/167)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*CP0425831,539,1640CG99.7% 734.3 / NA 313intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base C (0/1);  new base G (146/165);  total (146/167)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*CP0425831,539,1650TA100.0% 749.1 / NA 313intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base A (146/167);  total (146/167)

Only 100 of 313 total aligned reads displayed.

TCAAGAGGATAAGAATCCACATCAAAGATATTTTTACTGACCGGTTGCAATGGAATATCAACAATAGCGGCACCTATACAAATAACGTCGAGATTATCCATATCATTATTCCGCTTTGCCATCAGAACCGAACAGTTTAATTTTTTCCAATGCCCGTTCTTTTACAGCTTTACGTACTTCACGTTCTAAATGCAGGAAAGGCTGATCCTGGTTTTCTTTCACTGCAACCATTGCGGCCTGACAGAGCTCC‑GTATGAATGTTGAT‑TTTCGCGATACCCAAGC‑TAATTGCAGTTTTAATGTCGGCATCACTGATCCCGCTTGCACCGTGCAAAACCAGCGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAATTGTGGCTCACTCGTATAAACCCCATGCTGGTTGCCGATGGCGACAGCCAAACTATCACAGCCCGTACGTTCAACAAATTCAGCCGCCTGGTCAGGATCGGTATAGTGATAGCCCGCCAGCGCTTCCTCATAAACGGTTTCATTACCGACATGCCCTAATTCCGCCTCTA  >  CP042583/1538884‑1539437
                                                                                                                                                                                                                                                                                         ||||                                                                                                                                                                                                                                                                                
                 cacaTCAAAGATATTTTTACTGACCGGTTGCAATGGAATATCAACAATAGCGGCACCTATACAAATAACGTCGAGATTATCCATATCATTATTCCGCTTTGCCATCAGAACCGAACAGTTTAATTTTTTCCAATGCCCGTTCTTTTACAGCTTTACGTACTTCACGTTCTAAATGCAGGAAAGGCTGATCCTGGTTTTCTTTCACTGCAACCATTGCGGCCTGACAGAGCTCC‑GTATGAATGTTGAT‑TTTCGCGATACCCAACG‑AAATTGCAGTTTTAATGTCGGCATc                                                                                                                                                                                                                                                          >  1:1564829/1‑289 (MQ=255)
                  acaTCAAAGATATTTTTACTGACCGGTTGCAATGGAATATCAACAATAGCGGCACCTATACAAATAACGTCGAGATTATCCATATCATTATTCCGCTTTGCCATCAGAACCGAACAGTTTAATTTTTTCCAATGCCCGTTCTTTTACAGCTTTACGTACTTCACGTTCTAAATGCAGGAAAGGCTGATCCTGGTTTTCTTTCACTGCAACCATTGCGGCCTGACAGAGCTCC‑GTATGAATGTTGAT‑TTTCGCGATACCCAACG‑AAATTGCAGTTTTAATGTCGGCATc                                                                                                                                                                                                                                                          >  1:1908903/1‑288 (MQ=255)
                       aaaGATATTTTTACTGACCGGTTGCAATGGAATATCAACAATAGCGGCACCTATACAAATAACGTCGAGATTATCCATATCATTATTCCGCTTTGCCATCAGAACCGAACAGTTTAATTTTTTCCAATGCCCGTTCTTTTACAGCTTTACGTACTTCACGTTCTAAATGCAGGAAAGGCTGATCCTGGTTTTCTTTCACTGCAACCATTGCGGCCTGACAGAGCTCC‑GTATGAATGTTGAT‑TTTCGCGATACCCAACG‑AAATTGCAGTTTTAATGTCGGCATCACTGa                                                                                                                                                                                                                                                     >  1:996584/1‑288 (MQ=255)
                       aaaGATATTTTTACTGACCGGTTGCAATGGAATATCAACAATAGCGGCACCTATACAAATAACGTCGAGATTATCCATATCATTATTCCGCTTTGCCATCAGAACCGAACAGTTTAATTTTTTCCAATGCCCGTTCTTTTACAGCTTTACGTACTTCACGTTCTAAATGCAGGAAAGGCTGATCCTGGTTTTCTTTCACTGCAACCATTGCGGCCTGACAGAGCTCC‑GTATGAATGTTGAT‑TTTCGCGATACCCAACG‑AAATTGCAGTTTTAATGTCGGCATCACTGAt                                                                                                                                                                                                                                                    <  2:1729877/289‑1 (MQ=255)
                       aaaGATATTTTTACTGACCGGTTGCAATGGAATATCAACAATAGCGGCACCTATACAAATAACGTCGAGATTATCCATATCATTATTCCGCTTTGCCATCAGAACCGAACAGTTTAATTTTTTCCAATGCCCGTTCTTTTACAGCTTTACGTACTTCACGTTCTAAATGCAGGAAAGGCTGATCCTGGTTTTCTTTCACTGCAACCATTGCGGCCTGACAGAGCTCC‑GTATGAATGTTGAT‑TTTCGCGATACCCAACG‑AAATTGCAGTTTTAATGTCGGCATCACTGAt                                                                                                                                                                                                                                                    <  1:1349598/289‑1 (MQ=255)
                       aaaGATATGTGTACTGACCGGTTGCAATGGAATATCAACAATAGCGTCACCTATACAAATAACGTCGAGATTATCCATATCATTATTCCGCTTTGCCATCAGAACCGAACAGTTTAATTTTTTCCAATGCCCGTTCTTTTACAGCTTTACGTACTTCACGTTCTAAATGCAGGAAAGGCTGATCCTGGTTTTCTTTCACTGCAACCATTGCGGCCTGACAGAGCTCC‑GTATGAATGTTGAT‑TTTCGCGATACCCAACG‑AAATTGCAGTTTTAATGTCGGCATCACTGAt                                                                                                                                                                                                                                                    <  2:371241/289‑1 (MQ=255)
                              tttttACTGACCGGTTGCAATGGAATATCAACAATAGCGGCACCTATACAAATAACGTCGAGATTATCCATATCATTATTCCGCTTTGCCATCAGAACCGAACAGTTTAATTTTTTCCAATGCCCGTTCTTTTACAGCTTTACGTACTTCACGTTCTAAATGCAGGAAAGGCTGATCCTGGTTTTCTTTCACTGCAACCATTGCGGCCTGACAGAGCTCC‑GTATGAATGTTGAT‑TTTCGCGATACCCAACG‑AAATTGCAGTTTTAATGTCGGCATCACTGATccccgat                                                                                                                                                                                                                                             >  2:92832/1‑285 (MQ=255)
                                  tACTGACCGGTTGCAATGGAATATCAACAATAGCGGCACCTATACAAATAACGTCGAGATTATCCATATCATTATTCCGCTTTGCCATCAGAACCGAACAGTTTAATTTTTTCCAATGCCCGTTCTTTTACAGCTTTACGTACTTCACGTTCTAAATGCAGGAAAGGCTGATCCTGGTTTTCTTTCACTGCAACCATTGCGGCCTGACAGAGCTCC‑GTATGAATGTTGAT‑TTTCGCGATACCCAACG‑AAATTGCAGTTTTAATGTCGGCATCACTGATccccgatgcac                                                                                                                                                                                                                                         <  1:1161525/289‑9 (MQ=255)
                                                         tCAACAATAGCGGCACCTATACAAATAACGTCGAGATTATCCATATCATTATTCCGCTTTGCCATCAGAACCGAACAGTTTAATTTTTTCCAATGCCCGTTCTTTTACAGCTTTACGTACTTCACGTTCTAAATGCAGGAAAGGCTGATCCTGGTTTTCTTTCACTGCAACCATTGCGGCCTGACAGAGCTCC‑GTATGAATGTTGAT‑TTTCGCGATACCCAACG‑AAATTGCAGTTTTAATGTCGGCATCACTg                                                                                                                                                                                                                                                      >  2:1907013/1‑253 (MQ=255)
                                                            acaaTAGCGGCACCTATACAAATAACGTCGAGATTATCCATATCATTGTTCCGCTTTGCCATCAGAACCGAACAGTTTAATTTTTTCCAATGCCCGTTCTTTTACAGCTTTACGTACTTCACGTTCTAAATGCAGGAAAGGCTGATCCTGGTTTTCTTTCACTGCAACCATTGCGGCCTGACAGAGCTCC‑GTATGAATGTTGAT‑TTTCGCGATACCCAACG‑AAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGCGGAACAGAAACg                                                                                                                                                                                                               >  2:1512584/1‑289 (MQ=255)
                                                              aaTAGCGGCACCTATACAAATAACGTCGAGATTATCCATATCATTATTCCGCTTTGCCATCAGAACCGAACAGTTTAATTTTTTCCAATGCCCGTTCTTTTACAGCTTTACGTACTTCACGTTCTAAATGCAGGAAAGGCTGATCCTGGTTTTCTTTCACTGCAACCATTGCGGCCTGACAGAGCTCC‑GTATGAATGTTGAT‑TTTCGCGATACCCAACG‑AAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGCGGAACAGAAACGGc                                                                                                                                                                                                             >  1:270660/1‑289 (MQ=255)
                                                                       acctattacaaTAACGTCGAGATTTTCCATGTCATTATTCCGCTTTGCCATCAGAACCGAACAGTTTAATTTTTTCCAATGCCCGTTCTTTTACAGCTTTACGTACTTCACGTTCTAAATGCAGGAAAGGCTGATCCTGGTTTTCTTTCACTGCAACCATTGCGGCCTGACAGAGCTCC‑GTATGAATGTTGAT‑TTTCGCGATACCCAACG‑AAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGCGGAACAGAAACGGCATCGCGTa                                                                                                                                                                                                     <  2:427749/279‑1 (MQ=255)
                                                                       aCCTATACAAATAACGTCGAGATTATCCATATCATTATTCCGCTTTGCCATCAGAACCGAACAGTTTAATTTTTTCCAATGCCCGTTCTTTTACAGCTTTACGTACTTCACGTTCTAAATGCAGGAAAGGCTGATCCTGGTTTTCTTTCACTGCAACCATTGCGGCCTGACAGAGCTCC‑GTATGAATGTTGAT‑TTTCGCGATACCCAACG‑AAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGCGGAACAGAAACGGCATCGCGTa                                                                                                                                                                                                     <  1:409396/288‑1 (MQ=255)
                                                                           ataCAAATAACGTCGAGATTATCCATATCATTATTCCGCTTTGCCATCAGAACCGAACAGTTTAATTTTTTCCAATGCCCGTTCTTTTACAGCTTTACGTACTTCACGTTCTAAATGCAGGAAAGGCTGATCCTGGTTTTCTTTCACTGCAACCATTGCGGCCTGACAGAGCTCC‑GTATGAATGTTGAT‑TTTCGCGATACCCAACG‑AAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGCGGAACAGAAACGGCATCGCGTAcgc                                                                                                                                                                                                  >  2:970844/1‑287 (MQ=255)
                                                                            taCAAATAACGTCGAGATTATCCATATCATTATTCCGCTTTGCCATCAGAACCGAACAGTTTAATTTTTTCCAATGCCCGTTCTTTTACAGCTTTACGTACTTCACGTTCTAAATGCAGGATAGGCTGATCCTGGTTTTCTTTCACTGCAACCATTGCGGCCTGACAGAGCTCC‑GTATGAATGTTGAT‑TTTCGCGATACCCAACG‑AAATTGCAGTTTTAATGTCGGCATCACTGAt                                                                                                                                                                                                                                                    <  1:1680548/236‑1 (MQ=255)
                                                                                   aaCGTCGAGATTATCCATATCATTATTCCGCTTTGCCATCAGAACCGAACAGTTTAATTTTTTCCAATGCCCGTTCTTTTACAGCTTTACGTACTTCACGTTCTAAATGCAGGAAAGGCTGATCCTGGTTTTCTTTCACTGCAACCATTGCGGCCTGACAGAGCTCC‑GTATGAATGTTGAT‑TTTCGCGATACCCAACG‑AAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGCGGAACAGAAACGGCATCGCGTACGCGTTTgacga                                                                                                                                                                                         >  1:1007565/1‑288 (MQ=255)
                                                                                   aaCGTCGAGATTATCCATATCATTATTCCGCTTTGCCATCAGAACCGAACAGTTTAATTTTTTCCAATGCCCGTTCTTTTACAGCTTTACGTACTTCACGTTCTAAATGCAGGAAAGGCTGATCCTGGTTTTCTTTCACTGCAACCATTGCGGCCTGACAGAGCTCC‑GTATGAATGTTGAT‑TTTCGCGATACCCAACG‑AAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGCGGAACAGAAACGGCATCGCGTACGCGTTTgacga                                                                                                                                                                                         >  2:468829/1‑288 (MQ=255)
                                                                                   aaCGTCGAGATTATCCATATCATTATTCCGCTTTGCCATCAGAACCGAACAGTTTAATTTTTTCCAATGCCCGTTCTTTTACAGCTTTACGTACTTCACGTTCTAAATGCAGGAAAGGCTGATCCTGGTTTTCTTTCACTGCAACCATTGCGGCCTGACAGAGCTCC‑GTATGAATGTTGAT‑TTTCGCGATACCCAACG‑AAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGCGGAACAGAAACGGCATCGCGTACGCGTTTgac                                                                                                                                                                                           <  2:278293/286‑1 (MQ=255)
                                                                                               aTCCATATCATTATTCCGCTTTGCCATCAGAACCGAACAGTTTAATTTTTTCCAATGCCCGTTCTTTTACAGCTTTACGTACTTCACGTTCTAAATGCAGGAAAGGCTGATCCTGGTTTTCTTTCACTGCAACCATTGCGGCCTGACAGAGCTCC‑GTATGAATGTTGAT‑TTTCGCGATACCCAACG‑AAATTGCAGTTTTAATGTCGGCATCACTGAt                                                                                                                                                                                                                                                    >  2:1565618/1‑217 (MQ=255)
                                                                                                tCCATATCATTATTCCGCTTTGCCATCAGAACCGAACAGTTTAATTTTTTCCAATGCCCGTTCTTTTACAGCTTTACGTACTTCACGTTCTAAATGCAGGAAAGGCTGATCCTGGTTTTCTTTCACTGCAACCATTGCGGCCTGACAGAGCTCC‑GTATGAATGTTGAT‑TTTCGCGATACCCAACG‑AAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGCGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAAt                                                                                                                                                                           <  1:645479/289‑1 (MQ=255)
                                                                                                  cATATCATTATTCCGCTTTGCCATCAGAACCGAACAGTTTAATTTTTTCCAATGCCCGTTCTTTTACAGCTTTACGTACTTCACGTTCTAAATGCAGGAAAGGCTGATCCTGGTTTTCTTTCACTGCAACCATTGCGGCCTGACAGAGCTCC‑GTATGAATGTTGAT‑TTTCGCGATACCCAACG‑AAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGCGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAATtg                                                                                                                                                                         <  2:292485/289‑1 (MQ=255)
                                                                                                     atCATTATTCCGCTTTGCCATCAGAACCGAACAGTTTAATTTTTTCCAATGCCCGTTCTTTTACAGCTTTACGTACTTCACGTTCTAAATGCAGGAAAGGCTGATCCTGGTTTTCTTTCACTGCAACCATTGCGGCCTGACAGAGCTCC‑GTATGAATGTTGAT‑TTTCGCGATACCCAACG‑AAATTGCAGTTTTAATGTCGGCATCACTGAt                                                                                                                                                                                                                                                    >  2:1247183/1‑211 (MQ=255)
                                                                                                     atCATTATTCCGCTTTGCCATCAGAACCGAACAGTTTAATTTTTTCCAATGCCCGTTCTTTTACAGCTTTACGTACTTCACGTTCTAAATGCAGGAAAGGCTGATCCTGGTTTTCTTTCACTGCAACCATTGCGGCCTGACAGAGCTCC‑GTATGAATGTTGAT‑TTTCGCGATACCCAACG‑AAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGCGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAATtgtg                                                                                                                                                                       >  1:615025/1‑288 (MQ=255)
                                                                                                     atCATTATTCCGCTTTGCCATCAGAACCGAACAGTTTAATTTTTTCCAATGCCCGTTCTTTTACAGCTTTACGTACTTCACGTTCTAAATGCAGGAAAGGCTGATCCTGGTTTTCTTTCACTGCAACCATTGCGGCCTGACAGAGCTCC‑GTATGAATGTTGAT‑TTTCGCGATACCCAACG‑AAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGCGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAATtgtg                                                                                                                                                                       >  1:1531956/1‑288 (MQ=255)
                                                                                                       cATTATTCCGCTTTGCCATCAGAACCGAACAGTTTAATTTTTTCCAATGCCCGTTCTTTTACAGCTTTACGTACTTCACGTTCTAAATGCAGGAAAGGCTGATCCTGGTTTTCTTTCACTGCAACCATTGCGGCCTGACAGAGCTCC‑GTATGAATGTTGAT‑TTTCGCGATACCCAACG‑AAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGCGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAATTGTGGCt                                                                                                                                                                    <  1:468829/289‑1 (MQ=255)
                                                                                                         ttattCCGCTTTGCCATCAGAACCGAACAGTTTAATTTTTTCCAATGCCCGTTCTTTTACAGCTTTACGTACTTCACGTTCTAAATGCAGGAAAGGCTGATCCTGGTTTTCTTTCACTGCAACCATTGCGGCCTGACAGAGCTCC‑GTATGAATGTTGAT‑TTTCGCGATACCCAACG‑AAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGCGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAATTGTGGCTct                                                                                                                                                                  <  1:1632810/289‑2 (MQ=255)
                                                                                                          tattCCGCTTTGCCATCAGAACCGAACAGTTTAATTTTTTCCAATGCCCGTTCTTTTACAGCTTTACGTACTTCACGTTCTAAATGCAGTAAAGGCTGATCCTGGTTTTCTTTCACTGCAACCATTGCGGCCTGACAGAGCTCC‑GTATGAATGTTGAT‑TTTCGCGATACCCAACG‑AAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGCGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAATTGTGGCTctg                                                                                                                                                                 >  1:930022/1‑287 (MQ=255)
                                                                                                          tattCCGCTTTGCCATCAGAACCGAACAGTTTAATTTTTTCCAATGCCCGTTCTTTTACAGCTTTACGTACTTCACGTTCTAAATGCAGGAAAGGCTGATCCTGGTTTTCTTTCACTGCAACCATTGCGGCCTGACAGAGCTCC‑GTATGAATGTTGAT‑TTTCGCGATACCCAACG‑AAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGCGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAATTGTGGCTctg                                                                                                                                                                 >  1:345445/1‑287 (MQ=255)
                                                                                                           attCCGCTTTGCCATCAGAACCGAACAGTTTAATTTTTTCCAATGCCCGTTCTTTTACAGCTTTACGTACTTCACGTTCTAAATGCAGGAAAGGCTGATCCTGGTTTTCTTTCACTGCAACCATTGCGGCCTGACAGAGCTCC‑GTATGAATGTTGAT‑TTTCGCGATACCCAACG‑AAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGCGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAATTGTGGCTctga                                                                                                                                                                <  2:1813399/289‑4 (MQ=255)
                                                                                                                 cTTTGCCATCAGAACCGAACAGTTTAATTTTTTCCAATGCCCGTTCTTTTACAGCTTTACGTACTTCACGTTCTAAATGCAGGAAAGGCTGATCCTGGTTTTCTTTCACTGCAACCATTGCGGCCTGACAGAGCTCC‑GTATGAATGTTGAT‑TTTCGCGATACCCAACG‑AAATTGCAGTTTTAATGTCGGCATCACTGATccccgatgcac                                                                                                                                                                                                                                         <  1:1332339/210‑9 (MQ=255)
                                                                                                                 cTTTGCCATCAGAACCGAACAGTTTAATTTTTTCCAATGCCCGTTCTTTTACAGCTTTACGTACTTCACGTTCTAAATGCAGGAAAGGCTGATCCTGGTTTTCTTTCACTGCAACCATTGCGGCCTGACAGAGCTCC‑GTATGAATGTTGAT‑TTTCGCGATACCCAACG‑AAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGCGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAATTGTGGCTctgacgtat                                                                                                                                                           >  2:1355263/1‑280 (MQ=255)
                                                                                                                 cTTTGCCATCAGAACCGAACAGTTTAATTTTTTCCAATGCCCGTTCTTTTACAGCTTTACGTACTTCACGTTCTAAATGCAGGAAAGGCTGATCCTGGTTTTCTTTCACTGCAACCATTGCGGCCTGACAGAGCTCC‑GTATGAATGTTGAT‑TTTCGCGATACCCAACG‑AAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGCGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAATTGTGGCTctgacgtat                                                                                                                                                           <  1:1355263/288‑9 (MQ=255)
                                                                                                                 cTTTGCCATCAGAACCGAACAGTTTAATTTTTTCCAATGCCCGTTCTTTTACAGCTTTACGTACTTCACGTTCTAAATGCAGGAAAGGCTGATCCTGGTTTTCTTTCACTGCAACCATTGCGGCCTGACAGAGCTCC‑GTATGAATGTTGAT‑TTTCGCGATACCCAACG‑AAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGCGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAATTGTGGCTctgacgtat                                                                                                                                                           <  1:1148081/288‑9 (MQ=255)
                                                                                                                 cTTTGCCATCAGAACCGAACAGTTTAATTTTTTCCAATGCCCGTTCTTTTACAGCTTTACGTACTTCACGTTCTAAATGCAGGAAAGGCTGATCCTGGTTTTCTTTCACTGCAACCATTGCGGCCTGACAGAGCTCC‑GTATGAATGTTGAT‑TTTCGCGATACCCAACG‑AAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGCGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAATTGTGGCTctg                                                                                                                                                                 >  1:1871338/1‑280 (MQ=255)
                                                                                                                 cTTTGCCATCAGAACCGAACAGTTTAATTTTTTCCAATGCCCGTTCTTTTACAGCTTTACGTACTTCACGTTCTAAATGCAGGAAAGGCTGATCCTGGTTTTCTTTCACTGCAACCATTGCGGCCTGACAGAGCTCC‑GTATGAATGTTGAT‑TTTCGCGATACCCAACG‑AAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGCGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAATTGTGGCTctg                                                                                                                                                                 <  2:1871338/282‑3 (MQ=255)
                                                                                                                 cTTTACCACCAGAACCGGACGGTTTAATTTTTTCCAATGCCCTTTCTTTTACAGCTTTACGTGCTTCATGTTTTAAATGCTGGAAAGGCTGATCCTGGGTTTCTTTTACTGCAACCATTGCGGCCGGAAAGAGCTCC‑GTATGAATGTTGAT‑TTTCGCGATACCCAACG‑AACTTGCAGTTTTAATGTCGCCATCACTGTTCGCCGATGCAACGTTCCAAACCAACGGAACAGAAACGGCATCGCGTATGAGTTTGCTGACCTCAATGTTCAATTTTGGccttgacgtcta                                                                                                                                                          >  2:641350/1‑278 (MQ=255)
                                                                                                                    tGCCATCAGAACCGAACAGTTTAATTTTTTCCAATGCCCGTTCTTTTACAGCTTTACGTACTTCACGTTCTAAATGCAGGAAAGGCTGATCCTGGTTTTCTTTCACTGCAACCATTGCGGCCTGACAGAGCTCC‑GTATGAATGTTGAT‑TTTCGCGATACCCAACG‑AAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGCGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAATTGTGGCTCTGACGTATaaa                                                                                                                                                        >  1:1658358/1‑288 (MQ=255)
                                                                                                                    tGCCATCAGAACCGAACAGTTTAATTTTTTCCAATGCCCGTTCTTTTACAGCTTTACGTACTTCACGTTCTAAATGCAGGAAAGGCTGATCCTGGTTTTCTTTCACTGCAACCATTGCGGCCTGACAGAGCTCC‑GTATGAATGTTGAT‑TTTCGCGATACCCAACG‑AAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGCGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAATTGTGGCTCTGACGTATaaa                                                                                                                                                        >  1:903934/1‑288 (MQ=255)
                                                                                                                    tGCCATCAGAACCGAACAGTTTAATTTTTTCCAATGCCCGTTCTTTTACAGCTTTACGTACTTCACGTTCTAAATGCAGGAAAGGCTGATCCTGGTTTTCTTTCACTGCAACCATTGCGGCCTGACAGAGCTCC‑GTATGAATGTTGAT‑TTTCGCGATACCCAACG‑AAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGCGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAATTGTGGCTCTGACGTATaaa                                                                                                                                                        >  1:1398911/1‑288 (MQ=255)
                                                                                                                      ccATCAGAACCGAACAGTTTAATTTTTTCCAATGCCCGTTCTTTTACAGCTTTACGTACTTCACGTTCTAAATGCAGGAAAGGCTGATCCTGGTTTTCTTTCACTGCAACCATTGCGGCCTGACAGAGCTCC‑GTATGAATGTTGAT‑TTTCGCGATACCCAACG‑AAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGCGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAATTGTGGCTCTGACGTATAAAcc                                                                                                                                                      >  2:1123586/1‑288 (MQ=255)
                                                                                                                       cATCAGAACCGAACAGTTTAATTTTTTCCAATGCCCGTTCTTTTACAGCTTTACGTACTTCACGTTCTAAATGCAGGAAAGGCTGATCCTGGTTTTCTTTCACTGCAACCATTGCGGCCTGACAGAGCTCC‑GTATGAATGTTGAT‑TTTCGCGATACCCAACG‑AAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGCGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAATTGTGGCTCTGACGTATAAAcccc                                                                                                                                                    <  2:1351899/289‑1 (MQ=255)
                                                                                                                          cAGAACCGAACAGTTTAATTTTTTCCAATGCCCGTTCTTTTACAGCTTTACGTACTTCACGTTCTAAATGCAGGAAAGGCTGATCCTGGTTTTCTTTCACTGCAACCATTGCGGCCTGACAGAGCTCC‑GTATGAATGTTGAT‑TTTCGCGATACCCAACG‑AAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGCGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAATTGTGGCTCTGACGTATAAACCCCAt                                                                                                                                                  >  1:1207697/1‑288 (MQ=255)
                                                                                                                                  aaCAGTTTAATTTTTTCCAATGCCCGTTCTTTTACAGCTTTACGTACTTCACGTTCTAAATGCAGGAAAGGCTGATCCTGGTTTTCTTTCACTGCAACCATTGCGGCCTGACAGAGCTCC‑GTATGAATGTTGAT‑TTTCGCGATACCCAACG‑AAATTGCAGTTTTAATGt                                                                                                                                                                                                                                                                 <  2:1662930/169‑1 (MQ=255)
                                                                                                                                  aaCAGTTTAATTTTTTCCAATGCCCGTTCTTTTACAGCTTTACGTACTTCACGTTCTAAATGCAGGAAAGGCTGATCCTGGTTTTCTTTCACTGCAACCATTGCGGCCTGACAGAGCTCC‑GTATGAATGTTGAT‑TTTCGCGATACCCAACG‑AAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGCGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAATTGTGGCTCTGACGTATAAACCCCATGCTGGTTg                                                                                                                                          >  1:489551/1‑288 (MQ=255)
                                                                                                                                  aaCAGTTTAATTTTTTCCAATGCCCGTTCTTTTACAGCTTTACGTACTTCACGTTCTAAATGCAGGAAAGGCTGATCCTGGTTTTCTTTCACTGCAACCATTGCGGCCTGACAGAGCTCC‑GTATGAATGTTGAT‑TTTCGCGATACCCAACG‑AAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGCGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAATTGTGGCTCTGACGTATAAACCCCATGCTGGTTg                                                                                                                                          >  1:35699/1‑288 (MQ=255)
                                                                                                                                       tttAATTTTTTCCAATGCCCGTTCTTTTACAGCTTTACGTACTTCACGTTCTAAATGCAGGAAAGGCTGATCCTGGTTTTCTTTCACTGCAACCATTGCGGCCTGACAGAGCTCC‑GTATGAATGTTGAT‑TTTCGCGATACCCAACG‑AAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGCGGAACAGAAACGGCATCGCGTACGCGTTTTCCGCCCTCAAAGTTCAATTGTGGCTCTGACGTATAACCACCATGCTGGTTGCCGATg                                                                                                                                    >  1:306355/1‑289 (MQ=255)
                                                                                                                                       tttAATTTTTTCCAATGCCCGTTCTTTTACAGCTTTACGTACTTCACGTTCTAAATGCAGGAAAGGCTGATCCTGGTTTTCTTTCACTGCAACCATTGCGGCCTGACAGAGCTCC‑GTATGAATGTTGAT‑TTTCGCGATACCCAACG‑AAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGCGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAATTGTGGCTctga                                                                                                                                                                >  1:1451326/1‑258 (MQ=255)
                                                                                                                                       tttAATTTTTTCCAATGCCCGTTCTTTTACAGCTTTACGTACTTCACGTTCTAAATGCAGGAAAGGCTGATCCTGGTTTTCTTTCACTGCAACCATTGCGGCCTGACAGAGCTCC‑GTATGAATGTTGAT‑TTTCGCGATACCCAACG‑AAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGCGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAATTGTGGCTctga                                                                                                                                                                <  2:1451326/261‑4 (MQ=255)
                                                                                                                                         tAATTTTTTCCAATGCCCGTTCTTTTACAGCTTTACGTACTTCACGTTCTAAATGCAGGAAAGGCTGATCCTGGTTTTCTTTCACTGCAACCATTGCGGCCTGACAGAGCTCC‑GTATGAATGTTGAT‑TTTCGCGATACCCAACG‑AAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGCGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAATTGTGGCTctg                                                                                                                                                                 >  2:1997159/1‑256 (MQ=255)
                                                                                                                                         tAATTTTTTCCAATGCCCGTTCTTTTACAGCTTTACGTACTTCACGTTCTAAATGCAGGAAAGGCTGATCCTGGTTTTCTTTCACTGCAACCATTGCGGCCTGACAGAGCTCC‑GTATGAATGTTGAT‑TTTCGCGATACCCAACG‑AAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGCGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAATTGTGGCTctg                                                                                                                                                                 <  1:1997159/258‑3 (MQ=255)
                                                                                                                                                      tGCCCGTTCTTTTACAGCTTTACGTACTTCACGTTCTAAATGCAGGAAAGGCTGATCCTGGTTTTCTTTCACTGCAACCATTGCGGCCTGACAGAGCTCC‑GTATGAATGTTGAT‑TTTCGCGATACCCAACG‑AAATTGCAGTTTTAATGTCGGCGTCACTGATccccgatgcac                                                                                                                                                                                                                                         <  2:1266228/173‑9 (MQ=255)
                                                                                                                                                         ccGTTCTTTTACAGCTTTACGTACTTCACGTTCTAAATGCAGGAAAGGCTGATCCTGGTTTTCTTTCACTGCAACCATTGCGGCCTGACAGAGCTCC‑GTATGAATGTTGAT‑TTTCGCGATACCCAACG‑AAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGCGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAATTGTGGCTCTGACGTATAAACCCCATGCTGGTTGCCGATGGCGACAGCCaatgaatca                                                                                                                  <  1:625785/289‑8 (MQ=255)
                                                                                                                                                                       cTTTACGTACTTCACGTTCTAAATGCAGGAAAGGCTGATCCTGGTTTTCTTTCACTGCAACCATTGCGGCCTGACAGAGCTCC‑GTATGAATGTTGAT‑TTTCGCGATACCCAACG‑AAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGCGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAATTGTGGCTCTGACGTATAAACCCCATGCTGGTTGCCGATGGCGACAGCCaat                                                                                                                        <  2:790394/269‑2 (MQ=255)
                                                                                                                                                                          tACGTACTTCACGTTCTAAATGCAGGAAAGGCTGATCCTGGTTTTCTTTCACTGCAACCATTGCGGCCTGACAGAGCTCC‑GTATGAATGTTGAT‑TTTCGCGATACCCAACG‑AAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGCGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAATTGTGGCTCTGACGTATAAACCCCATGCTGGTTGCCGATGGCGACAGCCAATGAATCACAGCCCGTACGTTcaac                                                                                                 >  2:1772405/1‑289 (MQ=255)
                                                                                                                                                                                 tttcagtgcgtaaTGCAGGAAAGGCTGATCCTGGTTTTCGTTCACTGCAACCATTGCGGCCTGACAGAGCTCC‑GTAGGAATGTTTAT‑TTTCGCGATACCCAACG‑AAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGCGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAATTGTGGCTCTGACGTATAAACCCCATGCTGGTTGCCGATGGCGACAGCCAATGAATCACAGCCCGTACGTTCAACAAATTCa                                                                                          <  2:1950337/278‑1 (MQ=255)
                                                                                                                                                                                  tCACGTTCTAAATGCAGGAAAGGCTGATCCTGGTTTTCTTTCACTGCAACCATTGCGGCCTGACAGAGCTCC‑GTATGAATGTTGAT‑TTTCGCGATACCCAACG‑AAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGCGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGtt                                                                                                                                                                               >  2:1067202/1‑203 (MQ=255)
                                                                                                                                                                                   cACGTTCTAAATGCAGGAAAGGCTGATCCTGGTTTTCTTTCACTGCAACCATTGCGGCCTGACAGAGCTCC‑GTATGAATGTTGAT‑TTTCGCGATACCCAACG‑AAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGCGGAACAGAAACGGCGTCGCGTACGCGTTTGACGACCTCAAAGTTCAATTGTGGCTCTGACGTATAAACCCCATGCTGGTTGCCGATGGCGACAGCCAATGAATCACAGCCCGTACGTTCAACAAATTCAg                                                                                         >  1:1222757/1‑288 (MQ=255)
                                                                                                                                                                                   cACGTTCTAAATGCAGGAAAGGCTGATCCTGGTTTTCTTTCACTGCAACCATTGCGGCCTGACAGAGCTCC‑GTATGAATGTTGAT‑TTTCGCGATACCCAACG‑AAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGCGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAATTGTGGCTctgac                                                                                                                                                               <  1:551789/218‑5 (MQ=255)
                                                                                                                                                                                   cACGTTCTAAATGCAGGAAAGGCTGATCCTGGTTTTCTTTCACTGCAACCATTGCGGCCTGACAGAGCTCC‑GTATGAATGTTGAT‑TTTCGCGATACCCAACG‑AAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGCGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAATTGTGGCTct                                                                                                                                                                  >  1:1745044/1‑214 (MQ=255)
                                                                                                                                                                                      gTTCTAAATGCAGGAAAGGCTGATCCTGGTTTTCTTTCACTGCAACCATTGCGGCCTGACAGAGCTCC‑GTATGAATGTTGAT‑TTTCGCGATACCCAACG‑AAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGCGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAATTGTGGCTCTGACGTATAAACCCCATGCTGGTTGCCGATGGCGACAGCCAATGAATCACAGCCCGTACGTTCAACAAATTCAgacg                                                                                      >  1:860630/1‑288 (MQ=255)
                                                                                                                                                                                           aaaTGCAGGAAAGGCTGATCCTGGTTTTCTTTCACTGCAACCATTGCGGCCTGACAGAGCTCC‑GTATGAATGTTGAT‑TTTCGCGATACCCAACG‑AACTTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGCGGAACAGAAACGGCATCGCGTCCGCGTTTGACGACCTCAAAGTTCAATTGTGGCTCTGACGTATAAACCCCATGCTGGTTGCCGATGGCGACAGCAAATGAATCCCAGCCCGTACGTTCACCCAATTCAACAGCCAGGt                                                                                >  2:1155986/1‑289 (MQ=255)
                                                                                                                                                                                           aaaTGCAGGAAAGGCTGATCCTGGTTTTCTTTCACTGCAACCATTGCGGCCTGACAGAGCTCC‑GTATGAATGTTGAT‑TTTCGCGATACCCAACG‑AAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGCGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAATTGTGGCTCTGACGTATAAACCCCATGCTGGTTGCCGATGGCGACAGCCAATGAATCACAGCCCGTACGTTCAACAAATTCAGCCGCCTgg                                                                                 >  1:747486/1‑288 (MQ=255)
                                                                                                                                                                                           aaaTGCAGGAAAGGCTGATCCTGGTTTTCTTTCACTGCAACCATTGCGGCCTGACAGAGCTCC‑GTATGAATGTTGAT‑TTTCGCGATACCCAACG‑AAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGCGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAATTGTGGCTCTGACGTATAAACCCCATGCTGGTTGCCGATGGCGACAGCCAATGAATCACAGCCCGTACGTTCAACAAATTCAGCCGCCTGGt                                                                                <  1:926081/289‑1 (MQ=255)
                                                                                                                                                                                            aaTGCAGGAAAGGCTGATCCTGGTTTTCTTTCACTGCAACCATTGCGGCCTGACAGAGCTCC‑GTATGAATGTTGAT‑TTTCGCGATACCCAACG‑AAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGCGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAATTGTGGCTCTGACGTATAAACCCCATGCTGGTTGCCGATGGCGACAGCCAATGAATCACAGCCCGTACGTTCAACAAATTCAGCCGCCTGGTc                                                                               <  2:39911/289‑1 (MQ=255)
                                                                                                                                                                                                 aGGAAAGGATAATGCTGTCTTTCCTTCACACGAACCCTTTGCGCCTTACAAAGCTCC‑GTATGAGTG‑TGATGTTTAGCGATA‑CCAAGCGAAATTGCCGTTTGAATGGCTTAATCACTGTTCCCCGATGGGACGTGAAAAACCAGCGGAACAGAAACGGCATCGCGTACGCGTTTGACGGCCTGAAGGTTCAATTGTGGGTATGACTTACAAACCCCATGCTGGTTGCCGAGGGCGACAGCCAATGAATCACAGCCCGTACGTTCAACAAATTCATCCGCCTGGTCAGGAt                                                                          <  2:921421/289‑1 (MQ=255)
                                                                                                                                                                                                  ggAAAGGCTGATCCTGGTTTTCTTTCACTGCAACCATTGCGGCCTGACAGAGCTCC‑GTATGAATGTTGAT‑TTTCGCGATACCCAACG‑AAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTCCAAAACCAGCGGAACAGAAACGGCATCGCTTACGCTTTTTACGACCTCAAAGGTCAATTGTGGCTCTGACGTATAAACCCCATGCTTGTTGCCGATTGCCACAGTCAATGAATCACAGCCCGTACCTTCAACAAATTCAGCCGCCTTGTCAGGATc                                                                         >  1:781620/1‑289 (MQ=255)
                                                                                                                                                                                                    ccgcaatggttgcagTTTTCTTTCACTGCAACCATTGCGGCCTGACAGAGCTCC‑GTATGAATGTTGAT‑TTTCGCGATACCCAACG‑AAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGCGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAATTGTGGCTCTGACGTATAAACCCCATGCTGGTTGCCGATGGCGACAGCCAATGAATCACAGCCCGTACGTTCAACAAATTCAGCCGCCTGGTCAGGATCgg                                                                       >  2:138215/15‑289 (MQ=255)
                                                                                                                                                                                                    aaaGGCTGTTCCTGGTTTTCTTTCACTGCAACCATTGCGGCCTGACAGAGCTCC‑GTATGAATGTTGAT‑TTTCGCGATACCCAACG‑AAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGCGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAATTGTGGCTCTGACGTATAAACCCCATGCTGGTTGCCGATGGCGACAGCCAATGAATCACAGCCCGTACGTTCAACAAATTCAGCCGCCTGGTCAGGAt                                                                          <  1:692575/286‑1 (MQ=255)
                                                                                                                                                                                                    aaaGGCTGATCCTGGTTTTCTTTCACTGCAACCATTGCGGCCTGACAGAGCTCC‑GTATGAATGTTGAT‑TTTCGCGATACCCAACG‑AAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGCGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAATTGTGGCTCTGACGTATAAACCCCATGCTGGTTGCCGATGGCGACAGCCAATGAATCACAGCCCGTACGTTCAACAAATTCAGCCGCCTGGTCAGGAt                                                                          <  1:1046003/286‑1 (MQ=255)
                                                                                                                                                                                                    aaaGGCTGATCCTGGTTTTCTTTCACTGCAACCATTGCGGCCTGACAGAGCTCC‑GTATGAATGTTGAT‑TTTCGCGATACCCAACG‑AAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGCGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAATTGTGGCTCTGACGTATAAACCCCATGCTGGTTGCCGATGGCGACAGCCAATGAATCACAGCCCGTACGTTCAACAAATTCAGCCGCCTGGTCAGGAt                                                                          <  2:548030/286‑1 (MQ=255)
                                                                                                                                                                                                    aaaGGCTGATCCTGGTTTTCTTTCACTGCAACCATTGCGGCCTGACAGAGCTCC‑GTATGAATGTTGAT‑TTTCGCGATACCCAACG‑AAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGCGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAATTGTGGCTCTGACGTATAAACCCCATGCTGGTTGCCGATGGCGACAGCCAATGAATCACAGCCCGTACGTTCAACAAATTCAGCCGCCTGGTCAGGAt                                                                          <  1:1795952/286‑1 (MQ=255)
                                                                                                                                                                                                    aaaGGCTGATCCTGGTTTTCTTTCACTGCAACCATTGCGGCCTGACAGAGCTCC‑GTATGAATGTTGAT‑TTTCGCGATACCCAACG‑AAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGCGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAATTGTGGCTCTGACGTATAAACCCCATGCTGGTTGCCGATGGCGACAGCCAATGAATCACAGCCCGTACGTTCAACAAATTCAGCCGCCTGGTCAGGAt                                                                          <  1:1829342/286‑1 (MQ=255)
                                                                                                                                                                                                    aaaGGCTGATCCTGGTTTTCTTTCACTGCAACCATTGCGGCCTGACAGAGCTCC‑GTATGAATGTTGAT‑TTTCGCGATACCCAACG‑AAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGCGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAATTGTGGCTCTGACGTATAAACCCCATGCTGGTTGCCGATGGCGACAGCCAATGAATCACAGCCCGTACGTTCAACAAATTCAGCCGCCTGGTCAGGATCgg                                                                       >  2:599719/1‑289 (MQ=255)
                                                                                                                                                                                                     aaGGCTGATCCTGGTTTTCTTTCACTGCAACCATTGCGGCCTGACAGAGCTCC‑GTATGAATGTTGAT‑TTTCGCGATACCCAACG‑AAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGCGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAATTGTGGCTCTGACGTATAAACCCCATGCTGGTTGCCGATGGCGACAGCCAATGAATCACAGCCCGTACGTTCAACAAATTCAGCCGCCTGGTCAGGATCgg                                                                       <  1:1118765/288‑1 (MQ=255)
                                                                                                                                                                                                      aGGCTGATCCTGGTTTTCTTTCACTGCAACCATTGCGGCCTGACAGAGCTCC‑GTATGAATGTTGAT‑TTTCGCGATACCCAACG‑AAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGCGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAATTGTGGCTCTGACGTATAAACCCCATGCTGGTTGCCGATGGCGACAGCCAATGAATCACAGCCCGTACGTTCAACAAATTCAGCCGCCTGGTCAGGATCGGta                                                                     <  1:1959995/289‑1 (MQ=255)
                                                                                                                                                                                                      aGGCTGATCCTGGTTTTCTTTCACTGCAACCATTGCGGCCTGACAGAGCTCC‑GTATGAATGTTGAT‑TTTCGCGATACCCAACG‑AAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGCGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAATTGTGGCTCTGACGTATAAACCCCATGCTGGTTGCCGATGGCGACAGCCAATGAATCACAGCCCGTACGTTCAACAAATTCAGCCGCCTGGTCAGGATCGGta                                                                     <  2:615025/289‑1 (MQ=255)
                                                                                                                                                                                                           gATCCTGGTTTTCTTTCACTGCAACCATTGCGGCCTGACAGAGCTCC‑GTATGAATGTTGAT‑TTTCGCGATACCCAACG‑AAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGCGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAATTGTGGCTctgac                                                                                                                                                               <  1:395042/194‑5 (MQ=255)
                                                                                                                                                                                                           gATCCTGGTTTTCTTTCACTGCAACCATTGCGGCCTGACAGAGCTCC‑GTATGAATGTTGAT‑TTTCGCGATACCCAACG‑AAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGCGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAATTGTGGCTCTGACGTATAAACCCCATGCTGGTTGCCGATGGCGACAGCCAATGAATCACAGCCCGTACGTTCAACAAATTCAGCCGCCTGGTCAGGATc                                                                         <  1:291465/280‑1 (MQ=255)
                                                                                                                                                                                                             tCCTGGTTTTCTTTCACTGCAACCATTGCGGCCTGACAGAGCTCC‑GTATGAATGTTGAT‑TTTCGCGATACCCAACG‑AAATTGCAGTTTTAATGTCGGCATCACTGAt                                                                                                                                                                                                                                                    >  2:763516/1‑107 (MQ=255)
                                                                                                                                                                                                             tCCTGGTTTTCTTTCACTGCAACCATTGCGGCCTGACAGAGCTCC‑GTATGAATGTTGAT‑TTTCGCGATACCCAACG‑AAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGCGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAATTGTGGCTCTGACGTATAAACCCCATGCTGGTTGCCGATGGCGACAGCCaat                                                                                                                        >  2:1329489/1‑230 (MQ=255)
                                                                                                                                                                                                               cTGGTTTTCTGTCACTGAACCCATGACCTCCTGACA‑AGGTCCATTATAAATGTTGTT‑TTTCGCGATACCCAACG‑AAATTGCAGTTTTAATGTCGGCATCCCTGATCCCCGATGCACCGTGCAAAACCAGCGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAATTGTGGCTCTGACGTATAAACCCCATGCTGGTTGCCGATGGCGACAGCCAATGAATCACAGCCCGTACGTTCAACAAATTCAGCCGCCTGGTCAGGATCGGTATAGTGATAg                                                            <  2:745475/289‑1 (MQ=255)
                                                                                                                                                                                                                  gTTTTCTTTCACTGCAACCATTGCGGCCTGACAGAGCTCC‑GTATGAATGTTGAT‑TTTCGCGATACCCAACG‑AAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGCGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAATTGTGGCTCTGACGTATAAACCCCATGCTGGTTGCCGATGGCGACAGCCAATGAATCACAGCCCGTACGTTCAACAAATTCAGCCGCCTGGTCAGGATCGGTATAGttaaaccc                                                          >  2:413036/1‑281 (MQ=255)
                                                                                                                                                                                                                       ctttcACTGCAACCATTGCGGCCTGACAGAGCTCC‑GTATGAATGTTGAT‑TTTCGCGATACCCAACG‑AAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGCGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAATTGTGGCTCTGACGTATAAACCCCATGCTGGTTGCCGATGGCGACAGCCAATGAATCACAGCCCGTACGTTCAACAAATTCAGCCGCCTGGt                                                                                <  1:1200589/261‑1 (MQ=255)
                                                                                                                                                                                                                       ctttcACTGCAACCATTGCGGCCTGACAGAGCTCC‑GTATGAATGTTGAT‑TTTCGCGATACCCAACG‑AAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGCGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAATTGTGGCTCTGACGTATAAACCCCATGCTGGTTGCCGATGGCGACAGCCAATGAATCACAGCCCGTACGTTCAACAAATTCAGCCGCCTGGt                                                                                >  2:1200589/1‑261 (MQ=255)
                                                                                                                                                                                                                                            ccTGACAGAGCTCC‑GTATGAATGTTGAT‑TTTCGCGATACCCAACG‑AAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGCGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAATTGTGGCTCTGACGTATAAACCCCATGCTGGTTGCCGATGGCGACAGCCAATGAATCACAGCCCGTACGTTCAACAAATTCAGCCGCCTGGTCAGGATCGGTATAGTGATAGCCCGCCAGCGCTTCCTCATAAACGGTTTc                               >  1:769935/1‑289 (MQ=255)
                                                                                                                                                                                                                                                aCAGAGCTCC‑GTATGAATGTTGAT‑TTTCGCGATACCCAACG‑AAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGCGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAATTGTGGCTCTGACGTATAAACCCCATGCTGGTTGCCGATGGCGACAGCCAATGAATCACAGCCCGTACGTTCAACAAATTCAGCCGCCTGGTCAGGATCGGTATAGTGATAGCCCGCCAGCGCTTCCTCATAAACGGTTTCAtt                            >  2:1547120/1‑288 (MQ=255)
                                                                                                                                                                                                                                                      cTCC‑GTATGAATGTTGAT‑TTTCGCGATACCCAACG‑AAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGCGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAATTGTGTCTCTGACGTATAAACCCCATGCTGGTTGCCGATGGCGACAGCCAATGAATCACAGCCCGTACGTTCAACAAATTCAGCCGCCTGGTCAGGATCGGCATACTGATAGCCCGCCAGCGCTTCCTCCTACACGGTTTCATTACCGACa                     >  2:832106/1‑289 (MQ=255)
                                                                                                                                                                                                                                                      cTCC‑GTATGAATGTTGAT‑TTTCGCGATACCCAACG‑AAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGCGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAATTGTGGCTCTGACGTATAAACCCCATGCTGGTTGCCGATGGCGACAGCCAATGAATCACAGCCCGTACGTTCAACAAATTCAGCCGCCTGGTCAGGATCGGTATAGTGATAGCCCGCCAGCGCTTCCTCATAAACGGTTTCATTACCGACa                     >  1:1380798/1‑289 (MQ=255)
                                                                                                                                                                                                                                                            tATGAATGTTGAT‑TTTCGCGATACCCAACG‑AAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGCGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAATTGTGGCTCTGACGTATAAACCCCATGCTGGTTGCCGATGGCGACAGCCAATGAATCACAGCCCGTACGTTCAACAAATTCAGCCGCCTGGTCAGGAt                                                                          >  2:1210003/1‑231 (MQ=255)
                                                                                                                                                                                                                                                            tATGAATGTTGAT‑TTTCGCGATACCCAACG‑AAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGCGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAATTGTGGCTCTGACGTATAAACCCCATGCTGGTTGCCGATGGCGACAGCCAATGAATCACAGCCCGTACGTTCAACAAATTCAGCCGCCTGGTCAGGATCGGTATAGTGATAGCCCGCCAGCGCTTCCTCATAAACGGTTTCATTACCGACa                     >  1:1249883/1‑284 (MQ=255)
                                                                                                                                                                                                                                                            tATGAATGTTGAT‑TTTCGCGATACCCAACG‑AAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGCGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAATTGTGGCTCTGACGTATAAACCCCATGCTGGTTGCCGACGGCGACAGCCAATGAATCACAGCCCGTACGTTCAACAAATTCAGCCGCCTGGTCAGGATCGGTATAGTGATAGCCCGCCAGCGCTTCCTCCTAAACGGTTTCATTACCGACATGcc                 >  2:248095/1‑288 (MQ=255)
                                                                                                                                                                                                                                                            tATGAATGTTGAT‑TTTCGCGATACCCAACG‑AAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGC‑GAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAATTGTGGCTCTGACGTATAAACCCCATGCTGGTTGCCGATGGCGACAGCCAATGAATCACAGCCCGTACGTTCAACAAATTCAGCCGCCTGGTCAGGAt                                                                          <  1:806215/230‑1 (MQ=255)
                                                                                                                                                                                                                                                                    ttGAT‑TTTCGCGATACCCAACG‑AAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGCGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAATTGTGGCTCTGACGTATAAACCCCATGCTGGTTGCCGATGGCGACAGCCAATGAATCACAGCCCGTACGTTCAACAAATTCAGCCGCCTGGTCAGGATCGGTATAGTGATAGTCCGCCAGCGCTTCCTCATATACAGTTTCATTACCGACATTCCATAATTcc         >  2:340367/1‑288 (MQ=255)
                                                                                                                                                                                                                                                                     tGAT‑TTTCGCAGTACCCAACG‑AAATTGCAGTTTTAATGTCGGCACCACTTATCCCCGATGCACCGTGCAAAACCAGCGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAATTGTGGCTCTGACGTATAAACCCCATGCTGGTTGCCGATGGCGACAGCCAATGAATCACAGCCCGTACGTTCAACAAATTCAGCCGCCTGGTCAGGATCGGTATAGTGATAGCCCGCCAGCGCTTCCTCATAAACGGTTTCATTACCGACATGCCCTAATTCCGc       <  2:1633357/289‑1 (MQ=255)
                                                                                                                                                                                                                                                                      gAT‑TTTCGCGATACCCAACG‑AAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGCGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAATTGTGGCTCTGACGTATAAACCCCATGCTGGTTGCCGATGGCGACAGCCAATGAATCACAGCCCGTACGTTCAACAAATTCAGCCGCCTGGTc                                                                               <  1:1434299/216‑1 (MQ=255)
                                                                                                                                                                                                                                                                      gAT‑TTTCGCGATACCCAACG‑AAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGCGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAATTGTGGCTCTGACGTATAAACCCCATGCTGGTTGCCGATGGCGACAGCCAATGAATCACAGCCCGTACGTTCAACAAATTCAGCCGCCTGGTc                                                                               >  2:1434299/1‑216 (MQ=255)
                                                                                                                                                                                                                                                                        t‑tttCGCGATACCCAACG‑AAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGCGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAATTGTGGCTCTGACGTATAAACCCCATGCTGGTTGCCGATGGCGACAGCCAATGAATCACAGCCCGTACGTTCAACAAATTCAGCCGCCTGGTCAGGATCGGTATAGTGATAGCCCGCCAGCGCTTCCTCATAAACGGTTTCATTACCGACATGCCCTAATTCCGCctc    <  1:965022/289‑1 (MQ=255)
                                                                                                                                                                                                                                                                           ttgccggtACCCAACG‑AAATTGCAGTTTTAATGTCGGCATCACTGATCCCCAATGCACCGTGCAAAACCAGCGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAATTGTGGCTCTGACGTATAAACCCCATGCTGGTTGCCGATGGCGACAGCCAATGAATCACAGCCCGTACGTTCAACAAATTCAGCCGCCTGGTCAGGATCGGTATAGTGATAGCCCGCCAGCGCTTCCTCATAAACGGTTTCATTACCGACATGCCCTAATTCCGCCTCTa  <  2:512689/282‑1 (MQ=255)
                                                                                                                                                                                                                                                                           ttCGCGATACCCAACG‑AAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGCGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAATTGTGGCTCTGACGTATAAACCCCATGCTGGTTGCCGATGGCGACAGCCAATGAATCACAGCCCGTACGTTCAACAAATTCAGCCGCCTGGTCAGGATCGGTATAGTGATAGCCCGCCAGCGCTTCCTCATAAACGGTTTCATTACCGACATGCCCTAATTCCGCCTCTa  <  1:1286795/289‑1 (MQ=255)
                                                                                                                                                                                                                                                                           ttCGCGATACCCAACG‑AAATTGCAGTTTTAATGTCGGCATCACTGATCCCCGATGCACCGTGCAAAACCAGCGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAATTGTGGCTCTGACGTATAAACCCCATGCTGGTTGCCGATGGCGACAGCCAATGAATCACAGCCCGTACGTTCAACAAATTCAGCCGCCTGGTCAGGATCGGTATAGTGATAGCCCGCCAGCGCTTCCTCATAAACGGTTTCATTACCGACATGCCCTAATTCCGCCTCTa  <  1:1512584/289‑1 (MQ=255)
                                                                                                                                                                                                                                                                                         ||||                                                                                                                                                                                                                                                                                
TCAAGAGGATAAGAATCCACATCAAAGATATTTTTACTGACCGGTTGCAATGGAATATCAACAATAGCGGCACCTATACAAATAACGTCGAGATTATCCATATCATTATTCCGCTTTGCCATCAGAACCGAACAGTTTAATTTTTTCCAATGCCCGTTCTTTTACAGCTTTACGTACTTCACGTTCTAAATGCAGGAAAGGCTGATCCTGGTTTTCTTTCACTGCAACCATTGCGGCCTGACAGAGCTCC‑GTATGAATGTTGAT‑TTTCGCGATACCCAAGC‑TAATTGCAGTTTTAATGTCGGCATCACTGATCCCGCTTGCACCGTGCAAAACCAGCGGAACAGAAACGGCATCGCGTACGCGTTTGACGACCTCAAAGTTCAATTGTGGCTCACTCGTATAAACCCCATGCTGGTTGCCGATGGCGACAGCCAAACTATCACAGCCCGTACGTTCAACAAATTCAGCCGCCTGGTCAGGATCGGTATAGTGATAGCCCGCCAGCGCTTCCTCATAAACGGTTTCATTACCGACATGCCCTAATTCCGCCTCTA  >  CP042583/1538884‑1539437

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A