Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A3 F210 I1 R1 4927 250.2 4002508 96.7% 3870425 266.6

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA CP042583 1,618,196 3 bp→TCG intergenic (–/–) – / – –/–

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0425831,618,1960AT100.0% 515.7 / NA 218intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base T (86/132);  total (86/132)
*CP0425831,618,1970GC99.5% 510.1 / NA 218intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base G (0/1);  new base C (86/130);  total (86/132)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*CP0425831,618,1980CG99.5% 515.2 / NA 218intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base C (0/0);  major base G (86/131);  minor base T (0/1);  total (86/132)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 218 total aligned reads displayed.

TCACACTGGAAGAACAAAAAATCTGGTCGAGCTGGCGCAGCTGGCACGCGAAAACGACGCCATGGTGATTGCCCTCACCTCTGCGGGTACCCCGCTCGCCCGGGAAGCAACGCTGGCAATTACCCTCGACGTACCGGAAGATACTGACATTTATATGCCCATGGTTTCTCGACTTGCACAGCTGACCGTGATAGATGTGCTGGCGACAGGATTTACTTTGCGACGCGGTGCAAAATTCAGAGATAACTTGAAGCGGGTCAAAGAAGCGCTGAAGGAAAGCCGTTTTGATAAGCAGTTACTTAATTTAAGTGACGATCGCTAAAAACGACTGTCACTGTCCTAATCTTATACGACATCCGAATGAGATTAATTTATCGCCATCGCGGCGTTATTTCATTCGGATTTCATGTTCAAGCAACACCTGGTTGTTTCAGTCAACGGAGTATTACATGTCCAGAAGGCTTCGCAGAACAAAAATCGTTACCACGTTAGGCCCAGCAACAGATCGCGATAATAATCTTGAAAAAGTTATCGCGGCGGGTGCCAACGTTGTACGTAT  >  CP042583/1617919‑1618477
                                                                                                                                                                                                                                                                                     |||                                                                                                                                                                                                                                                                                       
     cTGGAAGAACAAAAAATCTGGTCGAGCTGGCGCAGCTGGCACGCGAAAACGACGCCATGGTGATTGCCCTCACCTCTGCGGGTACCCCGCTCGCCCGGGAAGCAACGCTGGCAATTACCCTCGACGTACCGGAAGATACTGACATTTATATGCCCATGGTTTCTCGACTTGCACAGCTGACCGTGATAGATGTGCTGGCGACAGGATTTACTTTGCGACGCGGTGCAAAATTCAGAGATAACTTGAAGCGGGTCAAAGAAGCGCTGAAGGAATCGCGTTTTGATAAGCa                                                                                                                                                                                                                                                                           >  2:406230/1‑289 (MQ=255)
     cTGGAAGAACAAAAAATCTGGTCGAGCTGGCGCAGCTGGCACGCGAAAACGACGCCATGGTGATTGCCCTCACCTCTGCGGGTACCCCGCTCGCCCGGGAAGCAACGCTGGCAATTACCCTCGACGTACCGGAAGATACTGACATTTATATGCCCATGGTTTCTCGACTTGCACAGCTGACCGTGATAGATGTGCTGGCGACAGGATTTACTTTGCGACGCGGTGCAAAATTCAGAGATAACTTGAAGCGGGTCAAAGAAGCGCTGAAGGAATCGCGTTTTGATAAGCa                                                                                                                                                                                                                                                                           >  2:1149654/1‑289 (MQ=255)
             acaaacaaTCTGGTCGAGCTGGCGCAGCTGGCACGCGAAAACGACGCCATGGTGATTGCCCTCACCTCTGCGGGTACCCCGCTCGCCCGGGAAGCAACGCTGGCAATTACCCTCGACGTACCGGAAGATACTGACATTTATATGCCCATGGTTTCTCGACTTGCACAGCTGACCGTGATAGATGTGCTGGCGACAGGATTTACTTTGCGACGCGGTGCAAAATTCAGAGATAACTTGAAGCGGGTCAAAGAAGCGCTGAAGGAATCGCGTTTTGATAAGCAGTTACt                                                                                                                                                                                                                                                                     <  2:424244/287‑1 (MQ=255)
                aaaaaTCTGGTCGAGCTGGCGCAGCTGGCACGCGAAAACGACGCCATGGTGATTGCCCTCACCTCTGCGGGTACCCCGCTCGCCCGGGAAGCAACGCTGGCAATTACCCTCGACGTACCGGAAGATACTGACATTTATATGCCCATGGTTTCTCGACTTGCACAGCTGACCGTGATAGATGTGCTGGCGACAGGATTTACTTTGCGACGCGGTGCAAAATTCAGAGATAACTTGAAGCGGGTCAAAGAAGCGCTGAAGGAATCGCGTTTTGATAAGCAGTTACTTAAtt                                                                                                                                                                                                                                                                >  1:946272/1‑289 (MQ=255)
                aaaaaTCTGGTCGAGCTGGCGCAGCTGGCACGCGAAAACGACGCCATGGTGATTGCCCTCACCTCTGCGGGTACCCCGCTCGCCCGGGAAGCAACGCTGGCAATTACCCTCGACGTACCGGAAGATACTGACATTTATATGCCCATGGTTTCTCGACTTGCACAGCTGACCGTGATAGATGTGCTGGCGACAGGATTTACTTTGCGACGCGGTGCAAAATTCAGAGATAACTTGAAGCGGGTCAAAGAAGCGCTGAAGGAATCGCGTTTTGATAAGCAGTTACTTAAtt                                                                                                                                                                                                                                                                <  1:1593666/289‑1 (MQ=255)
                          tCGCGCTGGCGCAGCTGGCACGCGAAAAGGCCGCCATGGGGATTGCCCTCACCTCTGCGGGTACCCCGCTCGCCCGGGAAGCAACGCTGGCAATTACCCTCGACGTACCGGAAGATACTGACATTTATATGCCCATGGTTTCTCGACTTGCACAGCTGACCGTGATAGATGTGCTGGCGACAGGATTTACTTTGCGACGCGGTGCAAAATTCAGAGATAACTTGAAGCGGGTCAAAGAAGCGCTGAAGGAATCGCGTTTTGATAAGCAGTTACTTAATTTAAGTGACg                                                                                                                                                                                                                                                       <  2:623184/288‑1 (MQ=255)
                                       gCTGGCACGCCAAAACGACGCCATGGTGATTGCCCTCACCTCTGCGGGTACCCCGCTCGCCCGGGAAGCAACGCTGGCAATTACCCTCGACGTACCGGAAGATACTGACATTTATATGCCCATGGTTTCTCGACTTGCACAGCTGACCGTGATAGATGTGCTGGCGACAGGATTTACTTTGCGACGCGGTGCAAAATTCAGAGATAACTTGAAGCGGGTCAAAGAAGCGCTGAAGGAATCGCGTTTTGATAAGCAGTTACTTAATTTAAGTGACGATCGCTAAAAACGa                                                                                                                                                                                                                                         <  1:515984/289‑1 (MQ=255)
                                        cTGGCACGCGAAAACGACGCCATGGTGATTGCCCTCACTTCTGCGGGTACCCCGCTCGCCCGGGAAGCAACGCTGGCAATTACCCTCGACGTACCGGAAGATACTGACATTTATATGCCCATGGTTTCTCGACTTGCACAGCTGACCGTGATAGATGTGCTGGCGACAGGATTTACTTTGCGACGCGGTGCAAAATTCAGAGATAACTTGAAGCGGGTCAAAGAAGCGCTGAAGGAATCGCGTTTTGATAAGCAGTTACTTAATTTAAGTGACGATCGCTAAAAACg                                                                                                                                                                                                                                          >  1:525418/1‑287 (MQ=255)
                                        cTGGCACGCAAAAACGACGCCATGGTGATTGCCCTCACCTCTGCGGGTACCCCGCTCGCCCGGGAAGCAACGCTGGCAATTACCCTCGACGTACCGGAAGATACTGACATTTATATGCCCATGGTTTCTCGACTTGCACAGCTGACCGTGATAGATGTGCTGGCGACAGGATTTACTTTGCGACGCGGTGCAAAATTCAGAGATAACTTGAAGCGGGTCAAAGAAGCGCTGAAGGAATCGCGTTTTGATAAGCAGTTACTTAATTTAAGTGACGATCGCTAAAAACg                                                                                                                                                                                                                                          >  1:614595/1‑287 (MQ=255)
                                            cACGCGAAAACGACGCCATGGTGATTGCCCTCACCTCTGCGGGTACCCCGCTCGCCCGGGAAGCAACGCTGGCAATTACCCTCGACGTACCGGAAGATACTGACATTTATATGCCCATGGTTTCTCGACTTGCACAGCTGACCGTGATAGATGTGCTGGCGACAGGATTTACTTTGCGACGCGGTGCAAAATTCAGAGATAACTTGAAGCGGGTCAAAGAAGCGCTGAAGGAATCGCGTTTTGATAAGCAGTTACTTAATTTAAGTGACGATCGCTAAAAACGactgtc                                                                                                                                                                                                                                    >  1:1775597/1‑289 (MQ=255)
                                             aCGCGAAAACGACGCCATGGTGATTGCCCTCACCTCTGCGGGTACCCCGCTCGCCCGGGAAGCAACGCTGGCAATTACCCTCGACGTACCGGAAGATACTGACATTTATATGCCCATGGTTTCTCGACTTGCACAGCTGACCGTGATAGATGTGCTGGCGACAGGATTTACTTTGCGACGCGGTGCAAAATTCAGAGATAACTTGAAGCGGGTCAAAGAAGCGCTGAAGGAATCGCGTTTTGATAAGCAGTTACTTAATTTAAGTGACGATCGCTAAAAACGactgtca                                                                                                                                                                                                                                   <  1:1560132/289‑1 (MQ=255)
                                             aCGCGAAAACGACGCCATGGTGATTGCCCTCACCTCTGCGGGTACCCCGCTCGCCCGGGAAGCAACGCTGGCAATTACCCTCGACGTACCGGAAGATACTGACATTTATATGCCCATGGTTTCTCGACTTGCACAGCTGACCGTGATAGATGTGCTGGCGACAGGATTTACTTTGCGACGCGGTGCAAAATTCAGAGATAACTTGAAGCGGGTCAAAGAAGCGCTGAAGGAATCGCGTTTTGATAAGCAGTTACTTAATTTAAGTGACGATCGCTAAAAACGactgtca                                                                                                                                                                                                                                   <  1:923034/289‑1 (MQ=255)
                                             aCGCGAAAACGACGCCATGGTGATTGCCCCCACCTCTGCGGGTACCCCGCTCGCCCGGGAAGCAACGCTGGCAATTACCCTCGACGTACCGGAAGATACTGACATTTATATGCCCATGGTTTCTCGACTTGCACAGCTGACCGTGATAGATGTGCTGGCGACAGGATTTACGTTGCGACGCGGTGCAAAATTCAGAGATAACTTGAAGCGGGTCAAAGAAGCGCTGAAGGAATCGCGTTTTGATAAGCAGTTACTTAATTTAAGTGACGATCGCTAAAAACGactgtca                                                                                                                                                                                                                                   <  2:781762/289‑1 (MQ=255)
                                              cgcgAAAACGACGCCATGGTGATTGCCCTCACCTCTGCGGGTACCCCGCTCGCCCGGGAAGCAACGCTGGCAATTACCCTCGACGTACCGGAAGATACTGACATTTATATGCCCATGGTTTCTCGACTTGCACAGCTGACCGTGATAGATGTGCTGGCGACAGGATTTACTTTGCGACGCGGTGCAAAATTCAGAGATAACTTGAAGCGGGTCAAAGAAGCGCTGAAGGAATCGCGTTTTGATAAGCAGTTACTTAATTTAAGTGACGATCGCTAAAAACGactgtcac                                                                                                                                                                                                                                  <  2:795919/289‑1 (MQ=255)
                                                  aaaaCGACGCCATGGTGATTGCCCTCACCTCTGCGGGTACCCCGCTCGCCCGGGAAGCAACGCTGGCAATTACCCTCGACGTACCGGAAGATACTGACATTTATATGCCCATGGTTTCTCGACTTGCACAGCTGACCGTGATAGATGTGCTGGCGACAGGATTTACTTTGCGACGCGGTGCAAAATTCAGAGATAACTTGAAGCGGGTCAAAGAAGCGCTGAAGGAATCGCGTTTTGATAAGCAGTTACTTAATTTAAGTGACGATCGCTAAAAACGactgtcactgt                                                                                                                                                                                                                               >  1:1082056/1‑288 (MQ=255)
                                                   aaaCGACGCCATGGTGATTGCCCTCACCTCTGCGGGTACCCCGCTCGCCCGGGAAGCAACGCTGGCAATTACCCTCGACGTACCGGAAGATACTGACATTTATATGCCCATGGTTTCTCGACTTGCACAGCTGACCGTGATAGATGTGCTGGCGACAGGATTTACTTTGCGACGCGGTGCAAAATTCAGAGATAACTTGAAGCGGGTCAAAGAAGCGCTGAAGGAATCGCGTTTTGATAAGCAGTTACTTAATTTAAGTGACGATCGCTAAAAACGACTGTCACTGTcc                                                                                                                                                                                                                             <  1:646083/289‑1 (MQ=255)
                                                     acgacgCCATGGTGATTGCCCTCACCTCTGCGGGTACCCCGCTCGCCCGGGAAGCAACGCTGGCAATTACCCTCGACGTACCGGAAGATACTGACATTTATATGCCCATGGTTTCTCGACTTGCACAGCTGACCGTGATAGATGTGCTGGCGACAGGATTTACTTTGCGACGCGGTGCAAAATTCAGAGATAACTTGAAGCGGGTCAAAGAAGCGCTGAAGGAATCGCGTTTTGATAAGCAGTTACTTAATTTAAGTGACGATCGCTAAAAACGACTGTCACTGTCCTa                                                                                                                                                                                                                           <  2:1131789/289‑1 (MQ=255)
                                                     acgacgCCATGGTGATTGCCCTCACCTCTGCGGGTACCCCGCTCGCCCGGGAAGCAACGCTGGCAATTACCCTCGACGTACCGGAAGATACTGACATTTATATGCCCATGGTTTCTCGACTTGCACAGCTGACCGTGATAGATGTGCTGGCGACAGGATTTACTTTGCGACGCGGTGCAAAATTCAGAGATAACTTGAAGCGGGTCAAAGAAGCGCTGAAGGAATCGCGTTTTGATAAGCAGTTACTTAATTTAAGTGACGATCGCTAAAAACGACTGTCACTGTCCTa                                                                                                                                                                                                                           <  2:1082056/289‑1 (MQ=255)
                                                             aTGGTGATTGCCCTCACCTCTGCGGGTACCCCGCTCGCCCGGGAAGCAACGCTGGCAATTACCCTCGACGTACCGGAAGATACTGACATTTATATGCCCATGGTTTCTCGACTTGCACAGCTGACCGTGATAGATGTGCTGGCGACAGGATTTACTTTGCGACGCGGTGCAAAATTCAGAGATAACTTGAAGCGGGTCAAAGAAGCGCTGAAGGAATCGCGTTTTGATAAGCAGTTACTTAATTTAAGTGACGATCGCTAAAAACGACTGTCACTGTCCTAATCTtata                                                                                                                                                                                                                   <  1:1469875/289‑1 (MQ=255)
                                                                gTGGTTGCCATCACCTCTGCGGGTACCCGGCTGGCCCGGGAAGCAACGCTGGCAATTACCCTCGACGTACCGGAAGATACTGACATTTATATGCCCATGGTTTCTCGACTTGCACAGCTGACCGTGATAGATGTGCTGGCGACAGGATTTACTTTGCGACGCGGTGCAAAATTCAGAGATAACTTGAAGCGGGTCAAAGAAGCGCTGAAGGAATCGCGTTTTGATAAGCAGTTACTTAATTTAAGTGACGATCGCTAAAAACGACTGTCACTGTCCTAATCTTATACg                                                                                                                                                                                                                 <  2:637104/288‑1 (MQ=255)
                                                                   aTTGCCCTCACCTCTGCGGGTACCCCGCTCGCCCGGGAAGCAACGCTGGCAATTACCCTCGACGTACCGGAAGATACTGACATTTATATGCCCATGGTTTCTCGACTTGCACAGCTGACCGTGATAGATGTGCTGGCGACAGGATTTACTTTGCGACGCGGTGCAAAATTCAGAGATAACTTGAAGCGGGTCAAAGAAGCGCTGAAGGAATCGCGTTTTGATAAGCAGTTACTTAATTTAAGTGACGATCGCTAAAAACGac                                                                                                                                                                                                                                        >  2:1270694/1‑262 (MQ=255)
                                                                   aTTGCCCTCACCTCTGCGGGTACCCCGCTCGCCCGGGAAGCAACGCTGGCAATTACCCCCGACGTACCGGAAGATACTGACATTTATATGCCCATGGTTTCTCGACTTGCACAGCTGACCGTGATAGATGTGCTGGCTACAGGATTTACTTTGCGACGCAGTGCAAAATTCAGAGATAACTTGAAGCGGGTCCAAGAAGAGCTGAAGGAATCGCGTTTTGATAAGCAGTTACTTAATTTACGTGACGATCGCCAAAAACGACTGTGCCTGTCCtcacatcatacaact                                                                                                                                                                                                              >  2:1186077/1‑274 (MQ=255)
                                                                   aTTGCCCTCACCTCTGCGGGTACCCCGCTCGCCCGGGAAGCAACGCTGGCAAGTACCGTCGACGTACCGGAAGATACTGACATCTATATGCCCATGGTTTCTCGACTTGCACAGCTGAACGTGATAGATGTGCTGGCGACCGTATTTAATTTGCGACGCGGTGCAAAACTCAGAGATAACTTGAAGCGGGTAAAAGAAGCGCTGAAGGAATCGCGTGTTGATAAGCAGTTACTTAATCTAAGTGACGATCGCTAACACGGACTGGCACTGGCCTAATCTTATACGACa                                                                                                                                                                                                              >  2:914149/1‑288 (MQ=255)
                                                                         ccccccTCTGCGGGTACCCCGCTAGCCCGGGAAGCAACGCTGGCAATTACCCTCGACGTACCGGAAGATACTGACATTTATATGCCCATGGTTTCTCGACTTGCACAGCTGACCGTGATAGATGTGCTGGCGACAGGATTTACTTTGCGACGCGGTGCAAAATTCAGAGATAACTTGAAGCGGGTCAAAGAAGCGCTGAAGGAATCGCGTTTTGATAAGCAGTTACTTAATTTAAGTGACGATCGCTAAAAACGACTGTCACTGTCCTAATCTTATACGACATCCGAAt                                                                                                                                                                                                       <  2:946272/285‑1 (MQ=255)
                                                                           cACCTCTGCGGGTACCCCGCTCGCCCGGGAAGCAACGCTGGCAATTACCCTCGACGTACCGGAAGATACTGACATTTATATGCCCATGGTTTCTCGACTTGCACAGCTGACCGTGATAGATGTGCTGGCGACAGGATTTACTTTGCGACGCGGTGCAAAATTCAGAGATAACTTGAAGCGGGTCAAAGAAGCGCTGAAGGAATCGCGTTTTGATAAGCAGTTACTTAATTTAAGTGACGATCGCTAAAAACGACTGTCACTGTCCTAATCTTATACGACATCCGAATga                                                                                                                                                                                                     <  1:547251/289‑1 (MQ=255)
                                                                            aCCTCTGCGGGTACCCCGCTCGCCCGGGAAGCAACGCTGGCAATTACCCTCGACGTACCGGAAGATACTGACATTTATATGCCCATGGTTTCTCGACTTGCACAGCTGACCGTTATAGATGTGCTGGCGACAGGATTTACTTTGCGACGCGGTGCAAAATTCAGAGATAACTTGAAGCGGGTCAAAGAAGCGCTGAAGGAATCGCGTTTTGATAAGCAGTTACTTAATTTAAGTGACGATCGCTAAAAACGACTGTCACTGTCCTAATCTTATACGACATCCGAATgag                                                                                                                                                                                                    >  1:792435/1‑289 (MQ=255)
                                                                                 tGCGGGTACCCCGCTCGCCCGGGAAGCAACGCTGGCAATTACCCTCGACGTACCGGAAGATACTGACATTTATATGCCCATGGTTTCTCGACTTGCACAGCTGACCGTGATAGATGTGCTGGCGACAGGATTTACTTTGCGACGCGGTGCAAAATTCAGAGATAACTTGAAGCGGGTCAAAGAAGCGCTGAAGGAATCGCGTTTTGATAAGCAGTTACTTAATTTAAGTGACGATCGCTAAAAACGactgtca                                                                                                                                                                                                                                   >  2:1171853/1‑253 (MQ=255)
                                                                                 tGCGGGTACCCCGCTCGCCCGGGAAGCAACGCTGGCAATTACCCTCGACGTACCGGAAGATACTGACATTTATATGCCCATGGTTTCTCGACTTGCACAGCTGACCGTGATAGATGTGCTGGCGACAGGATTTACTTTGCGACGCGGTGCAAAATTCAGAGATAACTTGAAGCGGGTCAAAGAAGCGCTGAAGGAATCGCGTTTTGATAAGCAGTTACTTAATTTAAGTGACGATCGCTAAAAACGactgtca                                                                                                                                                                                                                                   <  1:1171853/253‑1 (MQ=255)
                                                                                   cGGGTACCCCGCTCGCCCGGGAAGCAACGCTGGCAATTACCCTCGACGTACCGGAAGATACTGACATTTATATGCCCATGGTTTCTCGACTTGCACAGCTGACCGTGATAGATGTGCTGGCGACAGGATTTACTTTGCGACGCGGTGCAAAATTCAGAGATAACTTGAAGCGGGTCAAAGAAGCGCTGAAGGAATCGCGTTTTGATAAGCAGTTACTTAATTTAAGTGACGAACGCTAAAAACGACTGTCACTGTCCTAATCTTATACGACATCCGAATGAGATTAAtt                                                                                                                                                                                             >  1:1902303/1‑289 (MQ=255)
                                                                                      gTACCCCGCTCGCCCGGGAAGCAACGCTGGCAATTACCCTCGACGTACCGGAAGATACTGACATTTATATGCCCATGGTTTCTCGACTTGCACAGCTGACCGTGATAGATGTGCTGGCGACAGGATTTACTTTGCGACGCGGTGCAAAATTCAGAGATAACTTGAAGCGGGTCAAAGAAGCGCTGAAGGAATCGCGTTTTGATAAGCAGTTACTTACTTTAAGTGACGATCGCTAAAAACGACTTTCACTGTCCTACTCTTATACGACATCCTAATGAGATTAATTTa                                                                                                                                                                                           >  2:631707/1‑288 (MQ=255)
                                                                                      gTACCCCGCTCGCCCGGGAAGCAACGCTGGCAATTACCCTCGACGTACCGGAAGATACTGACATTTATATGCCCATGGTTTCTCGACTTGCACAGCTGACCGTGATAGATGTGCTGGCGACAGGATTTACTTTGCGACGCGGTGCAAAATTCAGAGATAACTTGAAGCGGGTCAAAGAAGCGCTGAAGGAATCGCGTTTTGATAAGCAGTTACTTAATTTAAGTGACGATCGCTAAAAACGACTGTCACTGTCCTAATCTTATACGACATCCGAATGAGATTAATTTa                                                                                                                                                                                           >  1:819894/1‑288 (MQ=255)
                                                                                      gTACCCCGCTCGCCCGGGAAGCAACGCTGGCAATTACCCTCGACGTACCGGAAGATACTGACATTTATATGCCCATGGTTTCTCGACTTGCACAGCTGACCGTGATAGATGTGCTGGCGACAGGATTTACTTTGCGACGCGGTGCAAAATTCAGAGATAACTTGAAGCGGGTCAAAGAAGCGCTGAAGGAATCGCGTTTTGATAAGCAGTTACTTAATTTAAGTGACGATCGCTAAAAACGACTGTCACTGTCCTAATCTTATACGACATCCGAATGAGATTAATTTAt                                                                                                                                                                                          >  1:182283/1‑289 (MQ=255)
                                                                                        aCCCCGCTCGCCCGGGAAGCAACGCTGGCAATTACCCTCGACGTACCGGAAGATACTGACATTTATATGCCCATGGTTTCTCGACTTGCACAGCTGACCGTGATAGATGTGCTGGCGACAGGATTTACTTTGCGACGCGGTGCAAAATTCAGAGATAACTTGAAGCGGGTCAAAGAAGCGCTGAAGGAATCGCGTTTTGATAAGCAGTTACTTAATTTAAGTGACGATCGCTAAAAACGACTGTCACTGTcc                                                                                                                                                                                                                             <  2:1288493/252‑1 (MQ=255)
                                                                                        aCCCCGCTCGCCCGGGAAGCAACGCTGGCAATTACCCTCGACGTACCGGAAGATACTGACATTTATATGCCCATGGTTTCTCGACTTGCACAGCTGACCGTGATAGATGTGCTGGCGACAGGATTTACTTTGCGACGCGGTGCAAAATTCAGAGATAACTTGAAGCGGGTCAAAGAAGCGCTGAAGGAATCGCGTTTTGATAAGCAGTTACTTAATTTAAGTGACGATCGCTAAAAACGACTGTCACTGTcc                                                                                                                                                                                                                             >  1:1288493/1‑252 (MQ=255)
                                                                                            cGCTCGCCCGGGAAGCAACGCTGGCAATTACCCTCGACGTACCGGAAGATACTGACATTTATATGCCCATGGTTTCTCGACTTGCACAGCTGACCGTGATAGATGTGCTGGCGACAGGATTTACTTTGCGACGCGGTGCAAAATTCAGAGATAACTTGAAGCGGGTCAAAGAAGCGCTGAAGGAATCGCGTTTTGATAAGCAGTTACTTAATTTAAGTGACGATCGCTAAAAACGACTGTCACTGTCCTAATCTTATACGACATCCGAATGAGATTAATTTATCGCCAt                                                                                                                                                                                    <  2:1223513/289‑1 (MQ=255)
                                                                                             gCTCGCCCGGGAAGCAACGCTGGCAATTACCCTCGACGTACCGGAAGATACTGACATTTATATGCCCATGGTTTCTCGACTTGCACAGCTGACCGTGATAGATGTGCTGGCGACAGGATTTACTTTGCGACGCGGTGCAAAATTCAGAGATAACTTGAAGCGGGTCAAAGAAGCGCTGAAGGAATCGCGTTTTGATAAGCAGTTACTTAATTTAAGTGACGATCGCTAAAAACGACTGTCACTGTCCTAATCTTATACGACATCCGAATGAGATTAATTTATCGCCAt                                                                                                                                                                                    >  1:1964714/1‑288 (MQ=255)
                                                                                             gCTCGCCCGGGAAGCAACGCTGGCAATTACCCTCGACGTACCGGAAGATACTGACATTTATATGCCCATGGTTTCTCGACTTGCACAGCTGACCGTGATAGATGTGCTGGCGACAGGATTTACTTTGCGACGCGGTGCAAAATTCAGAGATAACTTGAAGCGGGTCAAAGAAGCGCTGAAGGAATCGCGTTTTGATAAGCAGTTACTTAATTTAAGTGACGATCGCTAAAAACGACTGTCACTGTCCTAATCTTATACGACATCCGAATGAGATTAATTTATCGCCATc                                                                                                                                                                                   >  2:1564454/1‑289 (MQ=255)
                                                                                               tCGCCCGGGAAGCCACGCTGGCAATTACCCTCGACGTACCGGAAGATACTGACATTTATATGCCCATGGTTTCTCGACTTGCACAGCTGACCGTGATAGATGTGCTGGCGACAGGATTTACTTTGCGACGCGGTGCAAAATTCAGAGATAACTTGAAGCGGGTCAAAGAAGCGCTGAAGGAATCGCGTTTTGATAAGCAGTTACTTAATTTAAGTGACGATCGCTAAAAACGACTGTCACTGTCCTAATCTTATACGACATCCGAATGAGATTAATTTATCGCCATcgc                                                                                                                                                                                 <  2:174654/289‑1 (MQ=255)
                                                                                                                 tGGCAATTACCCTCGACGTACCGGAAGATACTGACATTTATATGCCCATGGTTTCTCGACTTGCACAGCTGACCGTGATAGATGTGCTGGCGACAGGATTTACTTTGCGACGCGGTGCAAAATTCAGAGATAACTTGAAGCGGGTCAAAGAAGCGCTGAAGGAATCGCGTTTTGATAAGCAGTTACTTAATTTAAGTGACGATCGCTAAAAACGACTGTCACTGTCCTAATCTTATACGACATCCGAATGAGATTAATTTATCGCCATCGCGGCGTTATTTCATTCGGa                                                                                                                                                               >  1:1910721/1‑289 (MQ=255)
                                                                                                                     caTTACCCTCGAGGTACCGGAAGATACTGACGTTTATATGCCCATGGTTTCTCGACTTGCACAGCTGACCGTGATAGATGTGCTGGCGACAGGATTTACTTTGCGACGCGGTGCAAAATTCAGAGATAACTTGAAGCGGGTCAAAGAAGCGCTGAAGGAATCGCGTTTTGATAAGCAGTTACTTAATTTAAGTGACGATCGCTAAAAACGACTGTCACTGTCCTAATCTTATACGACATCCGAATGAGATTAATTTATCGCCATCGCGGCGTTATTTCATTCGGATTTc                                                                                                                                                           <  2:685530/288‑1 (MQ=255)
                                                                                                                     aaTTAACCTCGACGTACCGGAAGATACTGAAATTTAGATGCCCATGGTTTCTCGACTTGCACAGCTGACCGTGATAGATGTGCTGGCGACAGGATTTACTTTGCGACGCGGTGCAAAATTCAGAGATAACTTGAAGCGGGTCAAAGAAGCGCTGAAGGAATCGCGTTTTGATAAGCAGTTACTTAATTTAAGTGACGATCGCTAAAAACGACTGTCACTGTCCTAATCTTATACGACATCCGAATGAGATTAATTTATCGCCATCGCGGCGTTATTTCATTCGGATTTc                                                                                                                                                           <  2:1591983/289‑1 (MQ=255)
                                                                                                                                    aCCGGAAGATACTGACATTTATATGCCCATGGTTTCTCGACTTGCACAGCTGACCGTGATAGATGTGCTGGCGACAGGATTTACTTTGCGACGCGGTGCAAAATTCAGAGATAACTTGAAGCGGGTCAAAGAAGCGCTGAAGGAATCGCGTTTTGATAAGCAGTTACTTAATTTAAGTGACGATCGCTAAAAACGACTGTCACTGTCCTAATCTTATACGACATCCGaa                                                                                                                                                                                                        <  1:99073/229‑1 (MQ=255)
                                                                                                                                    aCCGGAAGATACTGACATTTATATGCCCATGGTTTCTCGACTTGCACAGCTGACCGTGATAGATGTGCTGGCGACAGGATTTACTTTGCGACGCGGTGCAAAATTCAGAGATAACTTGAAGCGGGTCAAAGAAGCGCTGAAGGAATCGCGTTTTGATAAGCAGTTACTTAATTTAAGTGACGATCGCTAAAAACGACTGTCACTGTCCTAATCTTATACGACATCCGAATGAGATTAATTTATCGCCATCGCGGCGTTATTTCATTCGGATTTCATGTTCAAg                                                                                                                                                  >  1:1017909/1‑283 (MQ=255)
                                                                                                                                        gAAGATACTGACATTTATATGCCCATGGTTTCTCGACTTGCACAGCTGACCGTGATAGATGTGCTGGCGACAGGATTTACTTTGCGACGCGGTGCAAAATTCAGAGATAACTTGAAGCGGGTCAAAGAAGCGCTGAAGGAATCGCGTTTTGATAAGCAGTTACTTAATTTAAGTGACGATCGCTAAAAACGACTGTCACTGTCCTAATCGTATACGACATCCGAATGAGATTAATTTATAGCCATCGCGGCGTTATTACATTCGGATTTCATGTTCAAGCAACCACTgg                                                                                                                                        >  1:442921/1‑289 (MQ=255)
                                                                                                                                           gATACTGACATTTATATGCCCATGGTTTCTCGACTTGCACAGCTGACCGTGATAGATGTGCTGGCGACAGGATTTACTTTGCGACGCGGTGCAAAATTCAGAGATAACTTGAAGCGGGTCAAAGAAGCGCTGAAGGAATCGCGTTTTGATAAGCAGTTACTTAATTTAAGTGACGATCGCTAAAAACGACTGTCACTGTCCTAATCTTATACGACATCCGAATGAGATTAATTTATCGCCATCGCGGCGTTATTTCATTCGGATTTCATGTTCAAGCAACACCTGgttg                                                                                                                                     >  2:588349/1‑289 (MQ=255)
                                                                                                                                             tACTGACATTTATATGCCCATGGTTTCTCGACTTGCACAGCTGACCGTGATAGATGTGCTGGCGACAGGATTTACTTTGCGACGCGGTGCAAAATTCAGAGATAACTTGAAGCGGGTCAAAGAAGCGCTGAAGGAATCGCGTTTTGATAAGCAGTTACTTAATTTAAGTGACGATCGCTAAAAACGACTGTCACTGTCCTAATCTTATACGACATCCGAATGAGATTAATTTATCGCCATCGCGGCGTTATTTCATTCGGATTTCATGTTCAAGCAACACCTGgttgtt                                                                                                                                   <  2:87334/289‑1 (MQ=255)
                                                                                                                                              aCTGACATTTATATGCCCATGGTTTCTCGACTTGCACAGCTGACCGTGATAGATGTGCTGGCGACAGGATTTACTTTGCGACGCGGTGCAAAATTCAGAGATAACTTGAAGCGGGTCAAAGAAGCGCTGAAGGAATCGCGTTTTGATAAGCAGTTACTTAATTTAAGTGACGATCGCTAAAAACGactgtca                                                                                                                                                                                                                                   <  1:1117330/192‑1 (MQ=255)
                                                                                                                                                tGACATTTATATGCCCATGGTTTCTCGACTTGCACAGCTGACCGTGATAGATGTGCTGGCGACAGGATTTACTTTGCGACGCGGTGCAAAATTCAGAGATAACTTGAAGCGGGTCAAAGAAGCGCTGAAGGAATCGCGTTTTGATAAGCAGTTACTTAATTTAAGTGACGATCGCTAAAAACGACTGTCACTGTCCTAATCTTATACGACATCCGAATGAGATTAATTTATCGCCATCGCGGCGTTATTTCATTCGGATTTCATGTTCAAGCAACACCTGGTTGTTTCa                                                                                                                                >  1:1417068/1‑289 (MQ=255)
                                                                                                                                                     tttATATGCCCATGGTTTATCGACTTGCGCAGCTGACCGTGAGAGATGGGCTGGCGACATGATTGACTGTGCGAGGCGGTGCAAAAATCAGAGATAACTTGTAGCGGGTCAAGGAAGCGCTGAATGAATCGCGTGTTGATAAGCAGTTACTTAATTTAAGTGACTATCGCTAAAAACGACTGTCACTGTCCTAATCTTATGCGACATCCGAATGAGATTAATGTAGCGGCATCGCGGCGTTATTTCATTCGAATTTCATGTTCAAGCAACACCTGGTTGTTTCAGTCag                                                                                                                           <  2:792435/289‑2 (MQ=255)
                                                                                                                                                       tataTGCCCATGGTTTCTCGACTTGCACAGCTGACCGTGATAGATGTGCTGGCGACAGGATTTACTTTGCGACGCGGTGCAAAATTCAGAGATAACTTGAAGCGGGTCAAAGAAGCGCTGAAGGAATCGCGTTTTGATAAGCAGTTACTTAATTTAAGTGACGATCGCTAAAAACGACTGTCACTGTCCTAATCTTATACGACATCCGAATGAGATTAATTTATCGCCATCGCGGCGTTATTTCATTCGGATTTCATGTTCAAGCAACACCTgg                                                                                                                                        >  2:1653052/1‑274 (MQ=255)
                                                                                                                                                       tataTGCCCATGGTTTCTCGACTTGCACAGCTGACCGTGATAGATGTGCTGGCGACAGGATTTACTTTGCGACGCGGTGCAAAATTCAGAGATAACTTGAAGCGGGTCAAAGAAGCGCTGAAGGAATCGCGTTTTGATAAGCAGTTACTTAATTTAAGTGACGATCGCTAAAAACGACTGTCACTGTCCTAATCTTATACGACATCCGAATGAGATTAATTTATCGCCATCGCGGCGTTATTTCATTCGGATTTCATGTTCAAGCAACACCTGGTTGTTTCAGTCaa                                                                                                                           <  2:191198/287‑1 (MQ=255)
                                                                                                                                                       tataTGCCCATGGTTTCTCGACTTGCACAGCTGACCGTGATAGATGTGCTGGCGACAGGATTTACTTTGCGACGCGGTGCAAAATTCAGAGATAACTTGAAGCGGGTCAAAGAAGCGCTGAAGGAATCGCGTTTTGATAAGCAGTTACTTAATTTAAGTGACGATCGCTAAAAACGACTGTCACTGTCCTAATCTTATACGACATCCGAATGAGATTAATTTATCGCCATCGCGGCGTTATTTCATTCGGATTTCATGTTCAAGCAACACCTGGTTGTTTCAGTCAACg                                                                                                                         <  1:1266837/289‑1 (MQ=255)
                                                                                                                                                       tataTGCCCATGGTTTCTCGACTTGCACAGCTGACCGTGATAGATGTGCTGGCGACAGGATTTACTTTGCGACGCGGTGCAAAATTCAGAGATAACTTGAAGCGGGTCAAAGAAGCGCTGAAGGAATCGCGTTTTGATAAGCAGTTACTTAATTTAAGTGACGATCGCTAAAAACGACTGTCACTGTCCTAATCTTATACGACATCCGAATGAGATTAATTTATCGCCATCGCGGCGTTATTTCATTCGGATTTCATGTTCAAGCAACACCTGGTTGTTTCAGTCAACg                                                                                                                         >  1:700051/1‑289 (MQ=255)
                                                                                                                                                       tataTGCCCATGGTTTCTCGACTTGCACAGCTGACCGTGATAGATGTGCTGGCGACAGGATTTACTTTGCGACGCGGTGCAAAATTCAGAGATAACTTGAAGCGGGTCAAAGAAGCGCTGAAGGAATCGCGTTTTGATAAGCAGTTACTTAATTTAAGTGACGATCGCTAAAAACGACTGTCACTGTCCTAATCTTATACGACATCCGAATGAGATTAATTTATCGCCATCGCGGCGTTATTTCATTCGGATTTCATGTTCAAGCAACACCTGGTTGTTTCAGTCAACg                                                                                                                         >  1:40153/1‑289 (MQ=255)
                                                                                                                                                       tataTGCCCATGGTTTCTCGACTTGCACAGCTGACCGTGATAGATGTGCTGGCGACAGGATTTACTTTGCGACGCGGTGCAAAATTCAGAGATAACTTGAAGCGGGTCAAAGAAGCGCTGAAGGAATCGCGTTTTGATAAGCAGTTACTTAATTTAAGTGACGATCGCTAAAAACGACTGTCACTGTCCTAATCTTATACGACATCCGAATGAGATTAATTTATCGCCATCGCGGCGTTATTTCATTCGGATATCATGTTCAAGCAACACCTGGTTGTTTCAGTCAACg                                                                                                                         <  1:210435/289‑1 (MQ=255)
                                                                                                                                                       tataTGCCCATGGTTTCTCGACTTGCACAGCTGACCGTGATAGATGTGCTGGCGACAGGATTTACTTTGCGACGCGGTGCAAAATTCAGAGATAACTTGAAGCGGGTCAAAGAAGCGCTGAAGGAATCGCGTTTTGATAAGCAGTTAATTAATTTAAGTGACGATCGCTAAAGACGACTGTCACTGTCCTAATCTTATACGACATCCGAATGAGATTAATTTATCGCCATCGCGGCGTTATTTCATTCGGATTTCATGTTCAAGCAACACCTGGTTGTTTCAGTCAACg                                                                                                                         <  1:463750/289‑1 (MQ=255)
                                                                                                                                                        atatGCCCATGGTTTCTCGACTTGCACAGCTGACCGTGATAGATGTGCTGGCGACAGGATTTACTTTGCGACGCGGTGCAAAATTCAGAGATAACTTGAAGCGGGTCAAAGAAGCGCTGAAGGAATCGCGTTTTGATAAGCAGTTACTTAATTTAAGTGACGATCGCTAAAAACGACTGTCACTGTCCTAATCTTATACGACATCCGAATGAGATTAATTTATCGCCATCGCGGCGTTATTTCATTCGGATTTCATGTTCAAGCAACACCTGGTTGTTTCAGTCAACgg                                                                                                                        <  2:543451/289‑1 (MQ=255)
                                                                                                                                                            gCCCATGGTTTCTCGACTTGCACAGCTGACCGTGATAGATGTGCTGGCGACAGGATTTACTTTGCGACGCGGTGCAAAATTCAGAGATAACTTGAAGCGGGTCAAAGAAGCGCTGAAGGAATCGCGTTTTGATAAGCAGTTACTTAATTTAAGTGACGATCGCTAAAAACGACTGTCACTGTCCTAATCTTATACGACATCCGAATGAGATTAATTTATCGCCATCGCGGCGTTATTTCATTCGGAttt                                                                                                                                                            >  1:870610/1‑249 (MQ=255)
                                                                                                                                                                aTGGTTTCTCGACTTGCACAGCTGACCGTGATAGATGTGCTGGCGACAGGATTTACTTTGCGACGCGGTGCAAAATTCAGAGATAACTTGAAGCGGGTCAAAGAAGCGCTGAAGGAATCGCGTTTTGATAAGCAGTTACTTAATTTAAGTGACGATCGCTAAAAACGac                                                                                                                                                                                                                                        >  1:1670293/1‑169 (MQ=255)
                                                                                                                                                                aTGGTTTCTCGACTTGCACAGCTGACCGTGATAGATGTGCTGGCGACAGGATTTACTTTGCGACGCGGTGCAAAATTCAGAGATAACTTGAAGCGGGTCAAAGAAGCGCTGAAGGAATCGCGTTTTGATAAGCAGTTACTTAATTTAAGTGACGATCGCTAAAAACGACTGTCACTGTCCTAATCTTATACGACATCCGAATGAGATTAATTTATCGCCATCGCGGCGTTATTTCATTCGGATTTCATGTTCAAGCAACACCTGGTTGTTTCAGTCAACg                                                                                                                         <  2:287199/280‑1 (MQ=255)
                                                                                                                                                                aTGGTTTCTCGACTTGCACAGCTGACCGTGATAGATGTGCTGGCGACAGGATTTACTTTGCGACGCGGTGCAAAATTCAGAGATAACTTGAAGCGGGTCAAAGAAGCGCTGAAGGAATCGCGTTTTGATAAGCAGTTACTTAATTTAAGTGACGATCGCTAAAAACGACTGTCACTGTCCTAATCTTATACGACATCCGAATGAGATTAATTTATCGCCATCGCGGCGTTATTTCATTCGGATTTCATGTTCAAGCAACACCTGGTTGTTTCAGTCAACg                                                                                                                         >  1:287199/1‑280 (MQ=255)
                                                                                                                                                                aTGGTTTCTCGACTTGCACAGCTGACCGTGATAGATGTGCTGGCGACAGGATTTACTTTGCGACGCGGTGCAAAATTCAGAGATAACTTGAAGCGGGTCAAAGAAGCGCTGAAGGAATCGCGTTTTGATAAGCAGTTACTTAATTTAAGTGACGATCGCTAAAAACGACTGTCACTGTCCTAATCTTATACGACATCCGAATGAGATTAATTTATCGCCATCGCGGCGTTATTTCATTCGGATTTCATGTTCAAGCAACACCTGGTTGTTTCAGTCAACGGAGTATTAc                                                                                                                <  1:1653091/289‑1 (MQ=255)
                                                                                                                                                                aTGGTTTCTCGACTTGCACAGCTGACCGTGATAGATGTGCTGGCGACAGGATTTACTTTGCGACGCGGTGCAAAATTCAGAGATAACTTGAAGCGGGTCAAAGAAGCGCTGAAGGAATCGCGTTTTGATAAGCAGTTACTTAATTTAAGTGACGATCGCTAAAAACGACTGTCACTGTCCTAATCTTATACGACATCCGAATGAGATTAATTTATCGCCATCGCGGCGTTATTTCATTCGGATTTCATGTTCAAGCAACACCTGGTTGTTTCAGTCAACGGAGTATTAc                                                                                                                <  2:1530193/289‑1 (MQ=255)
                                                                                                                                                                 tGGTTTCTCGACTTGCACAGCTGACCGTGATAGATGTGCTGGCGACAGGATTTACTTTGCGACGCGGTGCAAAATTCAGAGATAACTTGAAGCGGGTCAAAGAAGCGCTGAAGGAATCGCGTTTTGATAAGCAGTTACTTAATTTAAGTGACGATCGCTAAAAACGACTGTCACTGTCCTAATCTTATACGACATCCGAATGAGATTAATTTATCGCCATCGCGGCGTTATTTCATTCGGATTTCATGTTCAAGCAACACCTGgttgtt                                                                                                                                   <  1:1406659/269‑1 (MQ=255)
                                                                                                                                                                  ggTTTCTCGACTTGCACAGCTGACCGTGATAGATGTGCTGGCGACAGGATTTACTTTGCGACGCGGTGCAAAATTCAGAGATAACTTGAAGCGGGTCAAAGAAGCGCTGAAGGAATCGCGTTTTGATAAGCAGTTACTTAATTTAAGTGACGATCGCTAAAAACGACTGTCACTGTCCTAATCTTATACGACATCCGAATGAGATTAATTTATCGCCATCGCGGCGTTATTTCATTCGGATTTCATGTTCAAGCAACACCTGGTTGTTTCAGTCAACGGAGTATTACAt                                                                                                              <  2:1886372/289‑1 (MQ=255)
                                                                                                                                                                       ctcGACTTGCACAGCTGACCGTGATAGATGTGCTGGCGACAGGATTTACTTTGCGACGCGGTGCAAAATTCAGAGATAACTTGAAGCGGGTCAAAGAAGCGCTGAAGGAATCGCGTTTTGATAAGCAGTTACTTAATTTAAGTGACGATCGCTAAAAACGACTGTCACTGTCCTACTCTTATACGACATCCGAATGAGATTAATTTATCGCCATCGCGGCGTTATTTCATTCGGATTTCATGTTCAAGCAACACCTGGTTGTTTCAGTCAACGGAGTATTACATGTCCa                                                                                                         >  2:484088/1‑289 (MQ=255)
                                                                                                                                                                       ctcGACTTGCACAGCTGACCGTGATAGATGTGCTGGCGACAGGATTTACTTTGCGACGCGGTGCAAAATTCAGAGATAACTTGAAGCGGGTCAAAGAAGCGCTGAAGGAATCGCGTTTTGATAAGCAGTTACTTAATTTAAGTGACGATCGCTAAAAACGACTGTCACTGTCCTAATCTTATACGACATCCGAATGAGATTAATTTATCGCCATCGCGGCGTTATTTCATTCGGATTTCATGTTCAAGCAACACTTGGTTGTTTCAGTCAACGGAGTATTACATGTCCa                                                                                                         >  1:1921690/1‑289 (MQ=255)
                                                                                                                                                                        tcGACTTGCGCAGCTGACCGTGATAGATGTGCTGGCGACAGGATTTACTTTGCGACGCGGTGCAAAATTCAGAGATAACTTGAAGCGGGTCAAAGAAGAGCTGAAGGAATCGCGTTTAGATAAGCAGTTACTTAATTTAAGTGACGATCGCTAAAAACGACTGTCACTGTCCTAATCTTATACGACATCCGAATGAGATTAATTTATCGCCATCGCGGCGTTATTTCATTCGGATTTCATGTTCAAGCAACACCTGGTTGTTTCAGTCAACGGAGTATTACATGTCCAg                                                                                                        <  2:212942/289‑1 (MQ=255)
                                                                                                                                                                             ttGCACAGCTGACCGTGATAGATGTGCTGGCGACAGGATTTACTTTGCGACGCGGTGCAAAATTCAGAGATAACTTGAAGCGGGTCAAAGAAGCGCTGAAGGAATCGCGTTTTGATAAGCAGTTACTTAATTTAAGTGACGATCGCTAAAAACGactgtca                                                                                                                                                                                                                                   <  2:1908461/161‑1 (MQ=255)
                                                                                                                                                                                  caGCTGACCGTGATAGATGTGCTGGCGACAGGATTTACTTTGCGACGCGGTGCAAAATTCAGAGATAACTTGAAGCGGGTCAAAGAAGCGCTGAAGGAATCGCGTTTTGATAAGCAGTTACTTAATTTAAGTGACGATCGCTAAAAACGACTGTCACTGTCCTAATCTTATACGACATCCGAATGAGATTAATTTATCGCCATCGCGGCGTTATTTCATTCGGATTTCATGTTCAAGCAACACCTGGTTGTTTCAGTCAACGGAGTATTACATGTCCAGAAGTCTTCGc                                                                                              >  2:1942651/1‑289 (MQ=255)
                                                                                                                                                                                        aCCGTGATAGATGTGCTGGCGACAGGATTTACTTTGCGACGCGGTGCAAAATTCAGAGATAACTTGAAGCGGGTCAAAGAAGCGCTGAAGGAATCGCGTTTTGATa                                                                                                                                                                                                                                                                               >  2:1669934/1‑106 (MQ=255)
                                                                                                                                                                                          cGTGATAGATGTGCTGGCGACAGGATTTACTTTGCGACGCGGTGCAAAATTCAGAGATAACTTGAAGCGGGTCAAAGAAGCGCTGAAGGAATCGCGTTTTGATAAGCAGTTACTTAATTTAAGTGACGATCGCTAAAAACGACTGTCACTGTCCTAATCTTATACGACATCCGAATGAGATTAATTTATCGCCATCGCGGCGTTATTTCATTCGGATTTCATGTTCAAGCAACACCTGGTTGTTTCAGTCAACGGAGTATTACATGTCCAGAAGGCTTCGCAGAACaaa                                                                                      >  1:1194395/1‑289 (MQ=255)
                                                                                                                                                                                              aTAGATGTGCTGGCGACAGGATTTACTTTGCGACGCGGTGCAAAATTCAGAGATAACTTGAAGCGGGTCAAAGAAGCGCTGAAGGAATCGCGTTTTGATAAGCAGTTACTTAATTTAAGTGACGATCGCTAAAAACGACTGTCACTGTCCTAATCTTATACGACATCCGAATGAGATTAATTTATCGCCATCGCGGCGTTATTTCATTCGGATTTCATGTTCAAGCAACACCTGGTTGTTTCAGTCAACGGAGTATTACATGTCCAGAAGGCTTCGCAGAACAAAAATc                                                                                  >  2:358939/1‑289 (MQ=255)
                                                                                                                                                                                               tAGATGTGCTGGCGACAGGATTTACTTTGCGACGCGGTGCAAAATTCAGAGATAACTTGAAGCGGGTCAAAGAAGCGCTGAAGGAATCGCGTTTTGATAAGCAGTTACTTAATTTAAGTGACGATCGCTAAAAACGACTGTCACTGTCCTAATCTTATACGACATCCGAATGAGATTAATTTATCGCCATCGCGGCGTTATTTCATTCGGATTTCATGTTCAAGCAACACCTGGTTGTTTCAGTCAACGGAGTATTACAt                                                                                                              >  2:217207/1‑260 (MQ=255)
                                                                                                                                                                                               tAGATGTGCTGGCGACAGGATTTACTTTGCGACGCGGTGCAAAATTCAGAGATAACTTGAAGCGGGTCAAAGAAGCGCTGAAGGAATCGCGTTTTGATAAGCAGTTACTTAATTTAAGTGACGATCGCTAAAAACGACTGTCACTGTCCTAATCTTATACGACATCCGAATGAGATTAATTTATCGCCATCGCGGCGTTATTTCATTCGGATTTCATGTTCAAGCAACACCTGGTTGTTTCAGTCAACGGAGTATTACAt                                                                                                              <  1:217207/260‑1 (MQ=255)
                                                                                                                                                                                                  aTGTGCTGGCGACAGGATTTACTTTGCGACGCGGTGCAAAATTCAGAGATAACTTGAAGCGGGTCAAAGAAGCGCTGAAGGAATCGCGTTTTGATAAGCAGTTACTTAATTTAAGTGACGATCGCTAAAAACGACTGTCACTGTCCTAATCTTATACGACATCCGAATGAGATTAATTTATCGCCATCGCGGCGTTATTTCATTCGGATTTCATGTTCAAGCAACACCTGGTTGTTTCAGTCAACGGAGTATTa                                                                                                                 <  1:656724/254‑1 (MQ=255)
                                                                                                                                                                                                  aTGTGCTGGCGACAGGATTTACTTTGCGACGCGGTGCAAAATTCAGAGATAACTTGAAGCGGGTCAAAGAAGCGCTGAAGGAATCGCGTTTTGATAAGCAGTTACTTAATTTAAGTGACGATCGCTAAAAACGACTGTCACTGTCCTAATCTTATACGACATCCGAATGAGATTAATTTATCGCCATCGCGGCGTTATTTCATTCGGATTTCATGTTCAAGCAACACCTGGTTGTTTCAGTCAACGGAGTATTACATGTCCAGAAGGCTTCGCAGAACAAAAATCGtt                                                                               >  1:630762/1‑288 (MQ=255)
                                                                                                                                                                                                       cTGGCGACAGGATTTACTTTGCGACGCGGTGCAAAATTCAGAGATAACTTGAAGCGGGTCAAAGAAGCGCTGAAGGAATCGCGTTTTGATAAGCAGTTACTTAATTTAAGTGACGATCGCTAAAAACGACTGTCACTGTCCTAATCTTATACGACATCCGAATGAGATTAATTTATCGCCATCGCGGCGTTATTTCATTCGGATTTCATGTTCAAGCAACACCTGGTTGTTTCAGTCAACGGAGTATTACATGTCCAGAAGGCTTCGCAGAACAAAAATCGTTACCACg                                                                         >  2:929479/1‑289 (MQ=255)
                                                                                                                                                                                                                  atatACTTTGAGAGGAGGTGCAAAATTGAGATATAACTTGAAGCGGGTAAAAGAAGCGCTGAAGGAATCGCGTTTTGATGAGCAGTTACTTAATTTAAGGGACGATCCCGAAAAACGACTGTCACTGTCCGAATCTTATACGACATCCGAATGAGATTAATTTATCGCCATCGCGGAGTTATTTCATTCGGATGTCATGTTCAAGCAACACCTGGTTGTTTCAGGCAACGGAGTATTACATGTCCAGAAGGCTTCGGAGAACAAAAATCGTGACCACGTTAGTcc                                                                  <  2:1238654/282‑1 (MQ=255)
                                                                                                                                                                                                                  aTTTACTTTGCGACGCGGTGCAAAATTCAGAGATAACTTGAAGCGGGTCAAAGAAGCGCTGAAGGAATCGCGTTTTGATAAGCAGTTACTTAATTTAAGTGACGATCGCTAAAAACGACTGTCACTGTCCTAATCTTATACGACATCCGAATGAGATTAATTTATCGCCATCGCGGCGTTATTTCATTCGGATTTCATGTTCAAGCAACACCTGGTTGTTTCAGTCAACGGAGTATTACATGTCCAGAAGGCTTCGCAGAACAAAAATCGTTACCACGTTAGGcc                                                                  <  1:117620/285‑1 (MQ=255)
                                                                                                                                                                                                                    ttACTTTGCGACGCGGTGCAAAATTCAGAGATAACTTGAAGCGGGTCAAAGAAGCGCTGAAGGAATCGCGTTTTGATAAGCAGTTACTTAATTTAAGTGACGATCGCTAAAAACGACTGTCACTGTCCTAATCTTATACGACATCCGAATGAGATTAATTTATCGCCATCGCGGCGTTATTTCATTCGGATTTCATGTTCAAGCAACACCTGGTTGTTTCAGTCAACGGAGTATTACATGTCCAGAAGGCTTCGCAGAACAAAAATCGTTACCACGTTAGGCCCAGCaa                                                            <  2:235466/289‑1 (MQ=255)
                                                                                                                                                                                                                      aCTTTGCGACGCGGTGCAAAATTCAGAGATAACTTGAAGCGGGTCAAAGAAGCGCTGAAGGAATCGCGTTTTGATAAGCAGTTACTTAATTTAAGTGACGATCGCTAAAAACGACTGTCACTGTCCTAATCTTATACGACATCCGAATGAGATTAATTTATCGCCATCGCGGCGTTATTTCATTCGGATTTCATGTTCAAGCAACACCTGGTTGTTTCAGTCAACGGAGTATTACATGTCCAGAAGGATTCGCAGAACAAAAATCGTTACCACGTTAGGCCCAGCAACa                                                          >  1:803133/1‑289 (MQ=255)
                                                                                                                                                                                                                           gCGACGCGGTGCAAAATTCAGAGATAACTTGAAGCGGGTCAAAGAAGCGCTGAAGGAATCGCGTTTTGATAAGCAGTTACTTAATTTAAGTGACGATCGCTAAAAACGACTGTCACTGTCCTAATCTTATACGACATCCGAATGAGATTAATTTATCGCCATCGCGGCGTTATTTCATTCGGATTTCATGTTCAAGCAACACCTGGTTGTTTCAGTCAACGGAGTATTACATGTCCAGAAGGCTTCGCAGAACAAAAATCGTTACCACGTTAGGCCCAGCAACAGATcg                                                     <  2:650388/289‑1 (MQ=255)
                                                                                                                                                                                                                            cGACGCGGTGCAAAATTCAGAGATAACTTGAAGCGGGTCAAAGAAGCGCTGAAGGAATCGCGTTTTGATAAGCAGTTACTTAATTTAAGTGACGATCGCTAAAAACGACTGTCACTGTCCTAATCTTATACGACATCCGAATGAGATTAATTTATCGCCATCGCGGCGTTATTTCATTCGGATTTCATGTTCAAGCAACACCTGGTTGTTTCAGTCAACGGAGTATTACATGTCCAGAAGGCTTCGCAGAACAAAAATCGTTACCACGTTAGGCCCAGCAACAGATcgc                                                    >  2:1664097/1‑289 (MQ=255)
                                                                                                                                                                                                                            cGACGCGGTGCAAAATTCAGAGAGAACTTGAAGCGGGTCAAAGAAGCGCTGAAGGAATCGCGTTTTGATAAGCAGTTACTTAATTTAAGTGACGATCGCTAAAAACGACTGTCACTGTCCTAATCTTATACGACATCCGAATGAGATTAATTTATCGCCATCGCGGCGTTATTTCATTCGGATTTCATGTTCAAGCAACACCTGGTTGTTTCAGTCAACGGAGTATTACATGTCCAGAAGGCTTCGCAGAACAAAAATCGTTACCACGTTAGGCCCAGCAACAGATcg                                                     <  2:459085/288‑1 (MQ=255)
                                                                                                                                                                                                                             gaagcgGTGCAAAATTCAGAGATAACTTGAAGGGGGTCAAAGAAGCGCTGAAGGAATCGCGTTTGGATAAGCAGTTACTTAATTTAAGTTACGATCGCTAAAAACGACTGTCACTGTCCGAATATTATACGACATCCGAATGAGATTAATTTATCGCCATCGCGGCGTTATTTCATTCGGATTTCATGTTCAAGCAACACCTGGTTGTTTCAGTCAACGGAGTATTACATGTCCAGAAGGCTTCGCAGAACAAAAATCGTTACCACGTTAGGCCCAGCAACAGATcgc                                                    <  1:1634729/285‑1 (MQ=255)
                                                                                                                                                                                                                                    tGCAAAATTCAGAGATAACTTGAAGCGGGTCAAAGAAGCGCTGAAGGAATCGCGTTTTGATAAGCAGTTACTTAATTTAAGTGACGATCGCTAAAAACGACTGTCACTGTCCTAATCTTATACGACATCCGAATGAGATTAATTTATCGCCATCGCGGCGTTATTTCATTCGGATTTCATGTTCAAGCAACACCTGGTTGTTTCAGTCAACGGAGTATTACATGTCCAGAAGGCTTCGCAGAACAAAAATCGTTACCACGTTAGGCCCAGCAACAGATCGCGAtaataa                                            >  2:1781029/1‑289 (MQ=255)
                                                                                                                                                                                                                                              agagATAACTTGAAGCGGGTCAAAGAAGCGCTGAAGGAATCGCGTTTTGATAAGCAGTTACTTAATTTAAGTGACGATCGCTAAAAACGACTGTCACTGTCCTAATCTTATACGACATCCGAATGAGATTAATTTATCGCCATCGCGGCGTTATTTCATTCGGATTTCATGTTCAAg                                                                                                                                                  >  2:1676276/1‑177 (MQ=255)
                                                                                                                                                                                                                                              agagATAACTTGAAGCGGGTCAAAGAAGCGCTGAAGGAATCGCGTTTTGATAAGCAGTTACTTAATTTAAGTGACGATCGCTAAAAACGACTGTCACTGTCCTAATCTTATACGACATCCGAATGAGATTAATTTATCGCCATCGCGGCGTTATTTCATTCGGATTTCATGTTCAAg                                                                                                                                                  <  1:1676276/177‑1 (MQ=255)
                                                                                                                                                                                                                                              agagATAACTTGAAGCGGGTCAAAGAAGCGCTGAAGGAATCGCGTTTTGATAAGCAGTTACTTAATTTAAGTGACGATCGCTAAAAACGACTGTCACTGTCCTAATCTTATACGACATCCGAATGAGATTAATTTATCGCCATCGCGGCGTTATTTCATTCGGATTTCATGTTCAAGCAACACCTGGTTGTTTCAGTCAACGGAGTATTACATGTCCAGAAGGCTTCGCAGAACAAAAATCGTTAc                                                                             >  2:964440/1‑246 (MQ=255)
                                                                                                                                                                                                                                              agagATAACTTGAAGCGGGTCAAAGAAGCGCTGAAGGAATCGCGTTTTGATAAGCAGTTACTTAATTTAAGTGACGATCGCTAAAAACGACTGTCACTGTCCTAATCTTATACGACATCCGAATGAGATTAATTTATCGCCATCGCGGCGTTATTTCATTCGGATTTCATGTTCAAGCAACACCTGGTTGTTTCAGTCAACGGAGTATTACATGTCCAGAAGGCTTCGCAGAACAAAAATCGTTACCACGTTAGGCCCAGCAACAGATCGCGATAATAATCTTGa                                      >  2:1798033/1‑285 (MQ=255)
                                                                                                                                                                                                                                                           aGCGGGTCAAAGAAGCGCTGAAGGAATAGCGTTTTGATAAGCAGTTACTTAATTTAAGTGACGATCGCTAAAAACGACTGTCACTGTCCTAATCTTATACGACATCCGAATGAGATTAATTTATCGCCATCGCGGCGTTATTTCATTCGGATTTCATGTTCAAGCAACACCTGGTTGTTTCAGTCAACGGAGTATTACATGTCCAGAAGGCTTCGCAGAACAAAAATCGTTACCACGTTAGGCCCAGCAACAGATCGCGATAATAATCTTGAAAAAGTTATCgcggcg                      <  2:346031/288‑1 (MQ=255)
                                                                                                                                                                                                                                                                gTCAAAGAAGCGCTGAAGGAATCGCGTTTTGATAAGCAGTTACTTAATTTAAGTGACGATCGCTAAAAACGACTGTCACTGTCCTAATCTTATACGACATCCGAATGAGATTAATTTATCGCCATCGCGGCGTTATTTCATTCGGATTTCATGTTCAAGCAACACCTGGTTGTTTCAGTCAACGGAGTATTACATGTCCAGAAGGCTTCGCAGAACAAAAATCGTTACCACGTTAGGCCCAGCAACAGATCGCGATAATAATCTTGAAAAAGTTATCGCGGCGGGTGcc                >  2:758187/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                gTCAAAGAAGCGCTGAAGGAATCGCGTTTTGATAAGCAGTTACTTAATTTAAGTGACGATCGCTAAAAACGACTGTCACTGTCCTAATCTTATACGACATCCGAATGAGATTAATTTATCGCCATCGCGGCGTTATTTCATTCGGATTTCATGTTCAAGCAACACCTGGTTGTTTCAGTCAACGGAGTATTACATGTCCAGAAGGCTTCGCAGAACAAAAATCGTTACCACGTTAGGCCCAGCAACAGATCGCGATAATAATCTTGAAAAAGTTATCGCGGCGGGTGc                 <  2:1830337/288‑1 (MQ=255)
                                                                                                                                                                                                                                                                 tCAAAGAAGCGCTGAAGGAATCGCGTTTTGATAAGCAGTTACTTAATTTAAGTGACGATCGCTAAAAACGACTGTCACTGTCCTAATCTTATACGACATCCGAATGAGATTAATTTATCGCCATCGCGGCGTTATTTCATTCGGATTTCATGTTCAAGCAACACCTGGTTGTTTCAGTCAACGGAGTATTACATGTCCAGAAGGCTTCGCAGAACAAAAATCGTTACCACGTTAGGCCCAGCAACAGATCGCGATAATAATCTTGAAAAAGTTATCGCGGCGGGTGcc                <  2:731350/288‑1 (MQ=255)
                                                                                                                                                                                                                                                                  cAAAGAAGCGCTGAAGGAATCGCGTTTTGATAAGCAGTTACTTAATTTAAGTGACGATCGCTAAAAACGACTGTCACTGTCCTAATCTTATACGACATCCGAATGAGATTAATTTATCGCCATCGCGGCGTTATTTCATTCGGATTTCATGTTCAAGCAACACCTGGTTGTTTCAGTCAACGGAGTATTACATGTCCAGAAGGCTTCGCAGAACAAAAATCGTTACCACGTTAGGCCCAGCAACAGATCGCGATAATAATCTTGAAAAAGTTATCGCGGCGGGTGCCa               <  2:146447/288‑1 (MQ=255)
                                                                                                                                                                                                                                                                    aagaagCGCTGAAGGAATCGCGTTTTGATAAGCAGTTACTTAATTTAAGTGACGATCGCTAAAAACGACTGTCACTGTCCTAATCTTATACGACATCCGAATGAGATTAATTTATCGCCATCGCGGCGTTATTTCATTCGGATTTCATGTTCAAGCAACACCTGGTTGTTTCAGTCAACGGAGTATTACATGTCCAGAAGGCTTCGCAGAACAAAAATCGTTACCACGTTAGGCCCAGCAACAGATCGCGATAATAATCTTGAAAAAGTTATCGCGGCGGGTGCCAACg            >  2:30439/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                          cgcTGAAGGAATCGCGTTTTGATAAGCAGTTACTTAATTTAAGTGACGATCGCTAAAAACGACTGTCACTGTCCTAATCTTATACGACATCCGAATGAGATTAATTTATCGCCATCGCGGCGTTATTTCATTCGGATTTCATGTTCAAGCAACACCTGGTTGTTTCAGTCAACGGAGTATTACATGTCCAGAAGGCTTCGCAGAACAAAAATCGTTACCACGTTAGGcc                                                                  <  1:345288/229‑1 (MQ=255)
                                                                                                                                                                                                                                                                          cgcTGAAGGAATCGCGTTTTGATAAGCAGTTACTTAATTTAAGTGACGATCGCTAAAAACGACTGTCACTGTCCTAATCTTATACGACATCCGAATGAGATTAATTTATCGCCATCGCGGCGTTATTTCATTCGGATTTCATGTTCAAGCAACACCTGGTTGTTTCAGTCAACGGAGTATTACATGTCCAGAAGGCTTCGCAGAACAAAAATCGTTACCACGTTAGGCCCAGCAACAGATCGCGATAATAATCTTGAAAAAGTTATCGCGGCGGGTGCCAACGTTGTAc      >  1:1846799/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                              gAAGGAATCGCGTTTTGATAAGCAGTTACTTAATTTAAGTGACGATCGCTAAAAACGACTGTCACTGTCCTAATCTTATACGACATCCGAATGAGATTAATTTATCGCCATCGCGGCGTTATTTCATTCGGATTTCATGTTCAAGCAACACCTGGTTGTTTCAGTCAACGGAGTATTACATGTCCAGAAGGCTTCGCAGAACAAAAATCGTTACCACGTTAGGCCCAGCAACAGATCGCGATAATAATCTTGAAAAAGTTATCGCGGCGGGTGCCAACGTTGTACGTAt  <  2:523521/289‑1 (MQ=255)
                                                                                                                                                                                                                                                                                     |||                                                                                                                                                                                                                                                                                       
TCACACTGGAAGAACAAAAAATCTGGTCGAGCTGGCGCAGCTGGCACGCGAAAACGACGCCATGGTGATTGCCCTCACCTCTGCGGGTACCCCGCTCGCCCGGGAAGCAACGCTGGCAATTACCCTCGACGTACCGGAAGATACTGACATTTATATGCCCATGGTTTCTCGACTTGCACAGCTGACCGTGATAGATGTGCTGGCGACAGGATTTACTTTGCGACGCGGTGCAAAATTCAGAGATAACTTGAAGCGGGTCAAAGAAGCGCTGAAGGAAAGCCGTTTTGATAAGCAGTTACTTAATTTAAGTGACGATCGCTAAAAACGACTGTCACTGTCCTAATCTTATACGACATCCGAATGAGATTAATTTATCGCCATCGCGGCGTTATTTCATTCGGATTTCATGTTCAAGCAACACCTGGTTGTTTCAGTCAACGGAGTATTACATGTCCAGAAGGCTTCGCAGAACAAAAATCGTTACCACGTTAGGCCCAGCAACAGATCGCGATAATAATCTTGAAAAAGTTATCGCGGCGGGTGCCAACGTTGTACGTAT  >  CP042583/1617919‑1618477

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A