Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A3 F210 I1 R1 4927 250.2 4002508 96.7% 3870425 266.6

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA CP042583 1,669,298 3 bp→CGA intergenic (–/–) – / – –/–

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0425831,669,2980GC100.0% 561.9 / NA 242intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base C (125/117);  total (125/117)
*CP0425831,669,2990CG99.2% 558.8 / NA 242intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base C (2/0);  new base G (123/117);  total (125/117)
Fisher's exact test for biased strand distribution p-value = 4.98e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*CP0425831,669,3000TA100.0% 563.7 / NA 242intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base A (125/117);  total (125/117)

Only 100 of 242 total aligned reads displayed.

GCTGCGGCAGAAAATGTTTGCCGTCGATGATTTTCGGATCGTCTGGCCCATTATCTTCTGCATCAGCCACGTCATAGCCCAGTTCGTCCAGCGTCTGCATGATGATGCGGAACGTTTTACCCTGGTCGTGACTTTTCAGGTTTTTGACGTTTTCGAGCACAAACATCGCCGGACGACGCGCGTCGATAATGCGTACCACATCAAAAAACAGC‑GTGCCCTGGGTATCGCAGGCAAAACCGTGCGCCCGCCCGAGGCTGTTCTTTTTGCTTACGCCAGCCAGGCTAAATGGCTGACAAGGGAAACCGGCCAGTAAAACATCGTGTTCAGGAATGTGTTGACGAATATGTTCCGCCGCCGCCTCATCACTCACGCCTTCTTTATGGCTGAGGGTGATGTCGCGGATATCTTCATTAAAATGATGCGTCGCCGGATCGCAATAATGGTTGGCTTTATAAGTGCGTACCGCATGTTTGTTCCATTCGCTGGTAAACACGCACTGTCCGCCAATGCTTTCAAAACCGCGACGGATGCCGCCAATTCCGGCGAATAGATCGATAAA  >  CP042583/1669018‑1669576
                                                                                                                                                                                                                                                                                         |||                                                                                                                                                                                                                                                                                    
gctgcGGCAGAAAATGTTTGCCGTCGATGATTTTCGGATCGTCTGGCCCATTATCTTCTGCATCAGCCACGTCATAGCCCAGTTCGTCCAGCGTCTGCATGATGATGCGGAACGTTTTACCCTGGTCGTGACTTTTCAGGTTTTTGACGTCTTCGAGCACAAACATCGCCGGACGACGCGCGTCGATAATGCGTACCACATCAAAAAACAGC‑GTGCCCTGGTTATCGCAGGCAAAACCGTGCGCCCGCCCGCACGAGTTCTTTTTTGGTACGTCAGCCAGCCAAAATgg                                                                                                                                                                                                                                                                                >  2:811232/1‑289 (MQ=255)
   gcGGCAGAAAATGTTTGCCGTCGATGATTTTCGGATCGTCTGGCCCATTATCTTCTGCATCAGCCACGTCATAGCCCAGTTCGTCCAGCGTCTGCATGATGATGCGGAACGTTTTACCCTGGTCGTGACTTTTCAGGTTTTTGACGTTTTCGAGCACAAACATCGCCGGACGACGCGCGTCGATAATGCGTACCACATCAAAAAACAGC‑GTGCCCTGGGTATCGCAGGCAAAACCGTGCGCCCGCCCGAGCGAGTTCTTTTTCGATACGCCAGCCAGCGAAAATGGCTg                                                                                                                                                                                                                                                                             <  1:666947/289‑1 (MQ=255)
     ggctggaagtttttGCTGTCGAGGATTTTCGGATGTTCTGTACCATTATTTTCTGCATCTGCCCAGTCATAGCCCAGTTCGTCCAGCGTCTGCATGATGATTCGGAACGTTTTACCCTCGTCGTGACTTTTCAGGTTTTTGACGTTTTCGAGCACAAACATCGCCGGACGACGCGCGTCGATAATGCGTACCACATCAAAAAACAGC‑GTGCCCTGGGTATCGCAGGCAAAACCGTGCGCCCGCCCGAGCGAGTTCTTTTTCGATACGCCAGCCAGCGAAAATGGCTGa                                                                                                                                                                                                                                                                            <  2:1923717/277‑1 (MQ=255)
         gAAAATGTTTGCCGTCGATGATTTTCGGATCGTCTGGCCCATTATCTTCTGCATCAGCCACGTCATAGCCCAGTTCGTCCAGCGTCTGCATGATGATGCGGAACGTTTTACCCTGGTCGTGACTTTTCAGGTTTTTGACGTTTTCGAGCACAAACATCGCCGGACGACGCGCGTCGATAATGCGTACCACATCAAAAAACAGC‑GTGCCCTGGGTATCGCAGGCAAAACCGTGCGCCCGCCCGAGCGAGTTCTTTTTCGATACGCCAGCCAGCGAAAATGGCTGACAAgg                                                                                                                                                                                                                                                                       >  1:449315/1‑289 (MQ=255)
         gAAAATGTTTGCCGTCGATGATTTTCGGATCGTCTGGCCCATTATCTTCTGCATCAGCCACGTCATAGCCCAGTTCGTCCAGCGTCTGCATGATGATGCGGAACGTTTTACCCTGGTCGTGACTTTTCAGGTTTTTGACGTTTTCGAGCACAAACATCGCCGGACGACGCGCGTCGATAATGCGTACCACATCAAAAAACAGC‑GTGCCCTGGGTATCGCAGGCAAAACCGTGCGCCCGCCCGAGCGAGTTCTTTTTCGATACGCCAGCCAGCGAAAATGGCTGACAAgg                                                                                                                                                                                                                                                                       >  1:1663223/1‑289 (MQ=255)
         gAAAATGTTTGCCGTCGATGATTTTCGGATCGTCTGGCCCATTATCTTCTGCATCAGCCACGTCATAGCCCAGTTCGTCCAGCGTCTGCATGATGATGCGGAACGTTTTACCCTGGTCGTGACTTTTCAGGTTTTTGACGTTTTCGAGCACAAACATCGCCGGACGACGCGCGTCGATAATGCGTACCACATCAAAAAACAGC‑GTGCCCTGGGTATCGCAGGCAAAACCGTGCGCCCGCCCGAGCGAGTTCTTTTTCGATACGCCAGCCAGCGAAAATGGCCGACAAgg                                                                                                                                                                                                                                                                       >  1:328971/1‑289 (MQ=255)
         gAAAATGTTTGCCGTCGATGATTTTCGGATCGTCTGGCCCATTATCTTCTGCATCAGCCACGTCATAGCCCAGTTCGTCCAGCGTCTGCATGATGATGCGGAACGTTTTACCCTGGTCGTGACTTTTCAGGTTTTTGACGTTTTCGAGCACAAACATCGCCGGACGACGCGCGTCGATAATGCGTACCACATCAAAAAACAGC‑GTGCCCTGGGTATCGCAGGCAAAACAGTGCGCCCGCCCGAGCGCGTTCTTTTTCGACACGCCAGCCAGCGAAAATGGCTCACAAgg                                                                                                                                                                                                                                                                       >  2:506161/1‑289 (MQ=255)
                 ttGCCGTCGATGATTTTCGGATCGTCTGGCCCATTATCTTCTGCATCAGCCACGTCATAGCCCAGTTCGTCCAGCGTCTGCATGATGATGCGGAACGTTTTACCCTGGTCGTGACTTTTCAGGTTTTTGACGTTTTCGAGCACAAACATCGCCGGACGACGCGCGTCGATAATGCGTACCACATCAAAAAACAGC‑GTGCCCTGGGTATCGCAGGCAAAACCGTGCGCCCGCCCGAGCGAGTTCTTTTTCGAGACGCCAGCCCGCGAAAATTGCTGACAAGGGAAACCg                                                                                                                                                                                                                                                                >  2:1764102/1‑288 (MQ=255)
                  tGCCGTCGATGATTTTCGGTTCGTCTGGCCCATTATCTTCTGCATCAGCCACGTCATAGCCCAGTTCGTCCAGCGTCTGCATGATGATGCGGAACGTTTTACCCTGGTCGTGACTTTTCAGGTTTTTGACGTTTTCGAGCACAAACATCGCCGGACGACGCGCGTCGATAATGCGTACCACATCAAAAAACAGC‑GTGCCCTGGGTATCGCAGGCAAAACCGTGCGCCCGCCCGAGCGAGTTCTTTTTCGATACGCCAGCCAGCGAAAATGGCTGACAAGGGAAACCGGc                                                                                                                                                                                                                                                              <  1:867036/289‑1 (MQ=255)
                  tGCCGTCGATGATTTTCGGATCGTCTGGCCCATTAGCTTCTGCATCAGCCACGTCATAGCCCAGTTCGTCCAGCGTCTGCATGATGATGCGGAACGTTTTACCCTGGTCGTGACTTTTCAGGTTTTTGACGTTTTCGAGCACAAACATCGCCGGACGACGCGCGTCGATAATGCGTACCACATCAAAAAACAGC‑GTGCCCTGGGTATCGCAGGCAAAACCGTGCGCCCGCCCGAGCGAGTTCTTTTTCGATACGCCAGCCAGCGAAAATGGCTGACAAGGGAAACCGGc                                                                                                                                                                                                                                                              <  1:518734/289‑1 (MQ=255)
                        cGATGATTTTCGGATCGTCTGGCCCATTATCTTCTGCATCAGCCACGTCATAGCCAAGTTCGTCCAGCGTCTGCATGATCATGCGGAACGTTTTACCCTGGTCGTGACTCTTCAGGTTTTTGACGTGTTCGAGCACAAACATCGCCGGACGACCCGCGTCGATAATGCGTACCACATCAAAAAACAGC‑GTGCCCTGGGTATCGCAGGCAAAAACGTGCGCCCGCCCGAGCCAGTTCTTTTTCGATACGCCAGCAACCGAAAATGGCTGACAACGGACACCGGCCAGTaa                                                                                                                                                                                                                                                        >  2:931916/1‑289 (MQ=255)
                              ttttCGGATCGTCTGGCCCATTATCTTCTGCATCAGCCACGTCATAGCCCAGTTCGTCCAGCGTCTGCATGATGATGCGGAACGTTTTACCCTGGTCGTGACTTTTCAGGTTTTTGACGTTTTCGAGCACAAACATCGCCGGACGACGCGCGTCGATAATGCGTACCACATCAAAAAACAGC‑GTGCCCTGGGTATCGCAGGCAAAACCGTGCGCCCGCCCGAGCGAGTTCTTTTTCGATACGCCAGCCAGCGAAAATGGCTGACAAGGGAAACCGGCCAGTAAAACATc                                                                                                                                                                                                                                                  <  2:453046/289‑1 (MQ=255)
                              tgtttggttCGTCTGGTCCATTATCTTGTGCATCAGCCACGTCATAGCCCCGTTCGTCCATCGTCTGCATGATGATGCGGAACGTTTTACCCTGGTCGTGACTTTTCAGGTTTTTGACGGTTTCGAGCACAAACATCGCCGGACGACGCGCGTCGATAATGCGTACCACATCAAAAAACAGC‑GTGCCCTGGGTATCGCAGGCAAAACCGTGCGCCCGCCCGAGCGAGTTCTTTTTCGATACGCCAGCCAGCGAAAATGGCTGACAAGGGAAACCGGCCAGTAAAACATc                                                                                                                                                                                                                                                  <  2:1271490/281‑1 (MQ=255)
                                tgcGGATCGTCTGGCCCATTATCTTCTGCATCAGCCACGTCATAGCCCAGTTCGTCCAGCGTCTGCATGATGATGCGGAACGTTTTACCCTGGTCGTGACTTTTCAGGTTTTTGACGTTTTCGAGCACAAACATCGCCGGACGACGCGCGTCGATAATGCGTACCACATCAAAAAACAGC‑GTGCCCTGGGTATCGCAGGCAAAACCGTGCGCCCGCCCGAGCGAGTTCTTTTTCGATACGCCAGCCAGCGAAAATGGCTGACAAGGGAAACCGGCCAGTAAAACATCgt                                                                                                                                                                                                                                                <  1:1369182/287‑1 (MQ=255)
                                     aTCGTCTGGCCCATTATCTTCTGCATCAGCCACGTCATAGCCCAGTTCGTCCAGCGTCTGCATGATGATGCGGAACGTTTTACCCTGGTCGTGACTTTTCAGGTTTTTGACGTTTTCGAGCACAAACATCGCCGGACGACGCGCGTCGATAATGCGTACCACATCAAAAAACAGC‑GTGCCCTGGGTATCGCAGGCAAAACCGTGCGCCCGCCCGAGCGAGTTCTTTTTCGATACGCCAGCCAGCGAAAATGGCTGACAAGGGAAACCGGCCAGTAAAACATc                                                                                                                                                                                                                                                  >  1:1757321/1‑282 (MQ=255)
                                          cTGGCCCATTAGCTTCTGCATCAGCCACGTCATAGCCCAGTTCGTCCAGCGTCTGCATGATGATGCGGAACGTTTTACCCTGGTCGTGACTTTTCAGGTTTTTGACGTTTTCGAGCACAAACATCGCCGGACGACGCGCGTCGATAATGCGTACCACATCAAAAAACAGC‑GTGCCCTGGGTATCGCAGGCAAAACCGTGCGCCCGCCCGAGCGAGTTCTTTTTCGATACGCCAGCCAGCGAAAATGGCTGACAAGGGAAACCGGCCAGTAAAACATCGTGTTCAGGAAt                                                                                                                                                                                                                                      <  1:389649/289‑1 (MQ=255)
                                                  ttATCTTCTGCATCAGCCACGTCATAGCCCAGTTCGTCCAGCGTCTGCATGATGATGCGGAACGTTTTACCCTGGTCGTGACTTTTCAGGTTTTTGACGTTTTCGAGCACAAACATCGCCGGACGACGCGCGTCGATAATGCGTACCACATCAAAAAACAGC‑GTGCCCTGGGTATCGCAGGCAAAACCGTGCGCCCGCCCGAGCGCGTTCTTTTTCGATACGCCAGCCAGCGAAAATGGCTGGTACGGGAAACCGGCCAGTAAAACATCGCGTTCAGGAATGTGTTGAc                                                                                                                                                                                                                              >  2:1158227/1‑289 (MQ=255)
                                                   tATCTTCTGCATCAGCCACGTCATAGCCCAGTTCGTCCAGCGTCTGCATGATGATGCGGAACGTTTTACCCTGGTCGTGACTTTTCAGGTTTTTGACGTTTTCGAGCACAAACATCGCCGGACGACGCGCGTCGATAATGCGTACCACATCAAAAAACAGC‑GTGCCCTGGGTATCGCAGGCAAAACCGTGCGCCCGCCCGAGCGAGTTCTTTTTCGATACGCCAGCCAGCGAAAATGGCTGACAAGGGAAACCGGCCAGTAAAACATCGTGTTCAGGAATGTGTTGACg                                                                                                                                                                                                                             >  1:350963/1‑289 (MQ=255)
                                                          tGCATCAGCCACGTCATAGCCCAGTTCGTCCAGCGTCTGCATGATGATGCGGAACGTTTTACCCTGGTCGTGCCTTTTCAGGTTTTTGACGTTTTCGAGCACAAACATCGCCGGCCGACGCCCGTCGCTAATACGTACCACATCAAAAAACAGC‑GTGCCCTGGGTATCGCAGGCAAAAACGTGCGCCCGCCCGAGCGAGTTCTTTTTCGATACGCCAGCCAGCGAAAACGGCTGACACAGGAAACCGGCCGATACAACACGGCGTTCAGGAATGGGTTGACTAaaattt                                                                                                                                                                                                                      >  2:1668499/1‑287 (MQ=255)
                                                            cATCAGCCACGTCATAGCCCAGTTCGTCCAGCGTCTGCATGATGATGCGGAACGTTTTACCCTGGTCGTGACTTTTCAGGTTTTTGACGTTTTCGAGCACAAACATCGCCGGACGACGCGCGTCGATAATGAGTACCACATCAAAAAACAGC‑GTGCCCTGGGTATCGCAGGCAAAACCGTGCGCCCGCCCGAGCGAGCTCTTTTTCGATACGCCAGCCAGCGAAAATGGCTGACAAGGGAAACCGGCCAGTAAAACATCGCGTTCAGGAATGTGTGGACGAATATGtt                                                                                                                                                                                                                     >  1:1012137/1‑288 (MQ=255)
                                                               cAGCCACGTCATAGCCCAGTTCGTCCAGCGTCTGCATGATGATGCGGAACGTTTTACCCTGGTCGTGACTTTTCAGGTTTTTGACGTTTTCGAGCACAAACATCGCCGGACGACGCGCGTCGATAATGCGTACCACATCAAAAAACAGC‑GTGCCCTGGGTATCGCAGGCAAAACCGTACGCCCGCCCGAGCGAGTTCTTTTTCGATACGCCAGCCAGCGAAAATGGCTGACAAGGGAAACCGGCCAGTAAAACATCCGGTTCAGGAATGTGTTGACGAATATGATccg                                                                                                                                                                                                                  >  1:1655983/1‑288 (MQ=255)
                                                                    aCGTCATAGCCCAGTTCGTCCAGCGTCTGCATGATGATGCGGAACGTTTTACCCTGGTCGTGACTTTTCAGGTTTTTGACGTTTTCGAGCACAAACATCGCCGGACGACGCGCGTCGATAATGCGTACCACATCAAAAAACAGC‑GTGCCCTGGGTATCGCAGGCAAAACCGTGCGCCCGCCCGAGCGAGTTCTTTTTCGATACGCCAGCCAGCGAAAATGGCTGACAAGGGAAACCGGCCAGTAAAACATCGTGTTCAGGAATGTGTTGACGAATATGTTccgccgcc                                                                                                                                                                                                             >  1:1189134/1‑288 (MQ=255)
                                                                         ttacacctgTTCTTCCAGCGTCTGCATGATGATGCGGAACGTGTTACCCTGGTCGTGACTTTTCAGGTTTTTGACGTTTTCGAGCACAAACATCGCCGGACGACGCGCGTCGATAATGCGTACCACATCAAAAAACAGC‑GTGCCCTGGGTATCGCAGGCAAAACCGTGCGCCCGCCCGAGCGAGTTCTTTTTCGATACGCCAGCCAGCGAAAATGGCTGACAAGGGAAACCGGCCAGTAAAACATCGTGTTCAGGAATGTGTTGACGAATATGTTCCGCCGCCGCCtca                                                                                                                                                                                                       <  2:1317370/281‑1 (MQ=255)
                                                                          tcccccAGTTCGTCGCGCGTCTGCATGGTTGTGCGGAACGTTTTCCCCTGGTCGTGACTTTGCAGGTTTTTGCCGTTTTCGAGCACAAACATCGCCGGACGACGCGCGTCGATAATGCGTACCACATCAAAAAACAGC‑GTGCCCTGGGTATCGCAGGCAAAACCGTGCGCCCGCCCGAGCGAGTTCTTTTTCGATACGCCAGCCAGCGAAAATGGCTGACAAGGGAAACCGGCCAGTAAAACATCGTGTTCAGGAATGTGTTGACGAATATGTTCCGCCGCCGCCtcat                                                                                                                                                                                                      <  2:151678/286‑1 (MQ=255)
                                                                            gCCCAGTTCGTCCAGCGTCTGCATGATGATGCGGAACGTTTTACCCTGGTCGTGACTTTTCAGGTTTTTGACGTTTTCGAGCACAAACATCGCCGGACGACGCGCGTCGATAATGCGTACCACATCAAAAAACAGC‑GTGCCCTGGGTATCGCAGGCAAAACCGTGCGCCCGCCCGAGCGAGTTCTTTTTCGATACGCCAGCCAGCGAAAATGGCTGACAAGGGAAACCGGCCAGTAAAACATCGTGTTCAGGAATGTGTTGACGAATATGTTCCGCCGCCGCCtcatc                                                                                                                                                                                                     >  2:279577/1‑288 (MQ=255)
                                                                                aGTTCGTCCAGCGTCTGCATGATGATGCGGAACGTTTTACCCTGGTCGTGACTTTTCAGGTTTTTGACGTTTTCGAGCACAAACATCGCCGGACGACGCGCGTCGATAATGCGTACCACATCAAAAAACAGC‑GTGCCCTGGGTATCGCAGGCAAAACCGTGCGCCCGCCCGAGCGAGTTCTTTTTCGATACGCCAGCCAGCGAAAATGGCTGACAAGGGAAACCGGCCAGTAAAACATCGTGTTCAGGAATGTGTTGACGAATATGTTCCGCCGCCGCCTCAtccctc                                                                                                                                                                                                 >  1:1211557/1‑288 (MQ=255)
                                                                                 gTTCGTCCAGCGTCTGCATGATGATGCGGAACGTTTTACCCTGGTCGTGACTTTTCAGGTTTTTGACGTTTTCGAGCACAAACATCGCCGGACGACGCGCGTCGATAATGCGTACCACATCAAAAAACAGC‑GTGCCCTGGGTATCGCAGGCAAAACCGTGCGCCCGCCCGAGCGAGTTCTTTTTCGATACGCCAGCCAGCGAAAATGGCTGACAAGGGAAACCGGCCAGTAAAACATCGTGTTCAGGAATGTGTTGACGAATATGTTCCGCCGCCGCCTCAtcactca                                                                                                                                                                                                >  2:590723/1‑288 (MQ=255)
                                                                                  ttCGTCCAGCGTCTGCATGATGATGCGGAACGTTTTACCCTGGTCGTGACTTTTCAGGTTTTTGACGTTTTCGAGCACAAACATCGCCGGACGACGCGCGTCGATAATGCGTACCACATCAAAAAACAGC‑GTGCCCTGGGTATCGCAGGCAAAACCGTGCGCCCGCCCGAGCGAGTTCTTTTTCGATACGCCAGCCAGCGAAAATGGCTGACAAGGGAAACCGGCCAGTAAAACATCGTGTTCAGGAATGTGTTGa                                                                                                                                                                                                                               >  1:75179/1‑256 (MQ=255)
                                                                                  ttCGTCCAGCGTCTGCATGATGATGCGGAACGTTTTACCCTGGTCGTGACTTTTCAGGTTTTTGACGTTTTCGAGCACAAACATCGCCGGACGACGCGCGTCGATAATGCGTACCACATCAAAAAACAGC‑GTGCCCTGGGTATCGCAGGCAAAACCGTGCGCCCGCCCGAGCGAGTTCTTTTTCGATACGCCAGCCAGCGAAAATGGCTGACAAGGGAAACCGGCCAGTAAAACATCGTGTTCAGGAATGTGTTGa                                                                                                                                                                                                                               <  2:75179/256‑1 (MQ=255)
                                                                                  ttCGTCCAGCGTCTGCATGATGATGCGGAACGTTTTACCCTGGTCGTGACTTTTCAGGTTTTTGACGTTTTCGAGCACAAACATCGCCGGACGACGCGCGTCGATAATGCGTACCACATCAAAAAACAGC‑GTGCCCTGGGTATCGCAGGCAAAACCGTGCGCCCGCCCGAGCGAGTTCTTTTTCGATACGCCAGCCAGCGAAAATGGCTGACAAGGGAAACCGGCCAGTAAAACATCGTGTTCAGGAATGTGTTGACGAATATGTTCCGCCGCCGCCTCAtcactcac                                                                                                                                                                                               >  1:790245/1‑288 (MQ=255)
                                                                                    cGTCCAGCGTCTGCATGATGATGCGGAACGTTTTACCCTGGTCGTGACTTTTCAGGTTTTTGACGTTTTCGAGCACAAACATCGCCGGACGACGCGCGTCGATAATGCGTACCACATCAAAAAACAGC‑GTGCCCTGGGTATCGCAGGCAAAACCGTGCGCCCGCCCGAGCGAGTTCTTTTTCGATACGCCAGCCAGCGAAAATGGCTGACAAGGGAAACCGGCCAGTAAAACATCGTGTTCAGGAATGTGTTGACGAATATGTTCCGCCGCCGCCTCATCACTCACGcc                                                                                                                                                                                            <  1:1764102/289‑1 (MQ=255)
                                                                                    cGTCCAGCGTCTGCATGATGATGCGGAACGTTTTACCCTGGTCGTGACTTTTCAGGTTTTTGACGTTTTCGAGCACAAACATCGCCGGACGACGCGCGTCGATAATGCGTACCACATCAAAAAACAGC‑GTGCCCTGGGTATCGCAGGCAAAACCGTGCGCCCGCCCGAGCGAGTTCTTTTTCGATACGCCAGACAGCGAAAATGGCTGACAAGGGAAACCGGCCAGTAAAACATCGTGTTCAGGAATGTGTTGACGAATATGTTCCGCCGCCGCCTCATCACTCACGcc                                                                                                                                                                                            <  2:1359852/289‑1 (MQ=255)
                                                                                       cccgCGTCTGCCTGTTGGTGCGGGACGTTTTACCCTTGTCGTGACTTTTCGGGTTTTTGACGTTTTCGAGCACAAACATCGCCGGACGAGGGGCGTCGGTAATGCTTACCGCATCGAAGAACAGC‑GTGCCCTGAGTATCGCAGGCAAAACCGTGCGCCCGCCCGAGCGAGTTCTTTTTCGATACGCCAGCCAGCGAAAATGGCTGACAAGGGAAACCGGCCAGTAAAACATCGTGTTCAGGAATGTGTTGACGAATATGTTCCGCCGCCGCCTCATCGCTCACGCctt                                                                                                                                                                                          <  2:73647/285‑1 (MQ=255)
                                                                                       ccAGCGTCTGCATGATGATGCGGAACGTTTTACCCTGGTCGTGGCTTTTCAGGTTTTTGACGTTTTCGAGCACAAACATCGCCGGACGACGCGCGTCGATAATGCGTACCACATCAAAAAACAGC‑GTGCCCTGGGTATCGCAGGCAAAACCGTGCGCCCGCCCGAGCGAGTTCTTTTTCGATACGCCAGCCAGCGAAAATGGCTGACAAGGGAAACCGGCCAGTAAAACATCGTGTTCAGGAATGTGTTGACGAATATGTTCCGCCGCCGCCtcat                                                                                                                                                                                                      <  1:112281/276‑1 (MQ=255)
                                                                                           cGTCTGCATGATGATGCGGAACGTTTTACCCTGGTCGTGACTTTTCAGGTTTTTGACGTTTTCGAGCACAAACATCGCCGGACGACGCGCGTCGATAATGCGTACCACATCAAAAAACAGC‑GTGCCCTGGGTATCGCAGGCAAAACCGTGCGCCCGCCCGAGCGAGTTCTTTTTCGATACGCCAGCCAGCGAAAATGGCTGACAAGGGAAACCGGCCAGTAAACCATCGTGTTCAGGAATGTGTTGACGAATATGTTCCGCCGCCGCCTCATCACCCACGCCTTCTTTa                                                                                                                                                                                     >  1:715103/1‑289 (MQ=255)
                                                                                               tGCATGATGATGCGGAACGTTTTACCCTGGTCGTGACTTTTCAGGTTTTTGACGTTTTCGAGCACAAACATCGCCGGACGACGCGCGTCGATAATGCGTACCACATCAAAAAACAGC‑GTGCCCTGGGTATCGCAGGCAAAACCGTGCGCCCGCCCGAGCGAGTTCTTTTTCGATACGCCAGCCAGCGAAAATGGCTGACAAGGGAAACCGGCCAGTAAAACATCGTGTTCAGGAATGTGTTGACGAATATGTTCCGCCGCCGCCTCATCACTCACGCCTTCTTTATg                                                                                                                                                                                   >  1:1034770/1‑287 (MQ=255)
                                                                                                        atgCGGAACGTTTTACCCTGGTCGTGACTTTTCAGGTTTTTGACGTTTTCGAGCACAAACATCGCCGGACGACGCGCGTCGATAATGCGTACCACATCAAAAAACAGC‑GTGCCCTGGGTATCGCAGGCAAAACCGTGCGCCCGCCCGAGCGAGTTCTTTTTCGATACGCCAGCCAGCGAAAATGGCTGACAAGGGAAACCGGCCAGTAAAACATCCTGTTCAGGAATGTGTTGACGAATATTGTCCGCCGCCGCCTCATCACCCACGCCTTCTTTATGGCTGATGGTGa                                                                                                                                                                        >  1:852174/1‑289 (MQ=255)
                                                                                                         tgCGGAACGTTTTACCCTGGTCGTGACTTTTCAGGTTTTTGACGTTTTCGAGCACAAACATCGCCGGACGACGCGCGTCGATAATGCGTACCACATCAAAAAACAGC‑GTGCCCTGGGTATCGCAGGCAAAACCGTGCGCCCGCCCGAGCGAGTTCTTTTTCGATACGCCAGCCAGCGAAAATGGCTGACAAGGGAAACCGGCCAGTAAAACa                                                                                                                                                                                                                                                    <  2:611243/212‑1 (MQ=255)
                                                                                                         tgCGGAACGTTTTACCCTGGTCGTGACTTTTCAGGTTTTTGACGTTTTCGAGCACAAACATCGCCGGACGACGCGCGTCGATAATGCGTACCACATCAAAAAACAGC‑GTGCCCTGGGTATCGCAGGCAAAACCGTGCGCCCGCCCGAGCGAGTTCTTTTTCGATACGCCAGCCAGCGAAAATGGCTGACAAGGGAAACAGGCCAGTAAAACATCGTGTTCAGGAAAGGGTTGACGAATATGTTCCCCCGCCGCCTCTACACCCACGCCTTCCTCATCGCTGCGGGttgt                                                                                                                                                                       >  2:389837/1‑286 (MQ=255)
                                                                                                                cGTTTTACCCTGGTCGTGACTTTTCAGGTTTTTGACGTTTTCGAGCACAAACATCGCCGGACGACGCGCGTCGATAATGCGTACCACATCAAAAAACAGC‑GTGCCCTGGGTATCGCAGGCAAAACCGTGCGCCCGCCCGAGCGAGTTCTTTTTCGATACGCCAGCCAGCGAAAATGGCTGACAAGGGAAACCGGCCAGTAAAACATc                                                                                                                                                                                                                                                  <  2:1726973/207‑1 (MQ=255)
                                                                                                                     tccccTGGTCGTGACTTTTCAGGTTTTTGACGTTTTCGAGCACAAACATCGCCGGACGACGCGCGTCGATAATGCGTACCACATCAAAAAACAGC‑GTGCCCTGGGTATCGCAGGCAAAACCGTGCGCCCGCCCGAGCGAGTTCTTTTTCGATACGCCAGCCAGCGAAAATGGCTGACAAGGGAAACCGGCCAGTAAAACATCGTGTTCAGGAATGTGTTGACGAATATGTTCCGCCGCCGCCTCATCACTCACGCCTTCTTTATGGCTGAGGGTGATGTCGCGGATATc                                                                                                                                                           <  1:811232/287‑1 (MQ=255)
                                                                                                                            gTCGTGACTTTTCAGGTTTTTGACGTTTTCGAGCACAAACATCGCCGGACGACGCGCGTCGATAATGCGTACCACATCAAAAAACAGC‑GTGCCCTGGGTATCGCAGGCAAAACCGTGCGCCCGCCCGAGCGAGTTCTTTTTCGATACGCCAGCCAGCGAAAATGGCTGACAAGGGAAACCGGCCAGTAAAACATCGTGTTCAGGAATGTGtt                                                                                                                                                                                                                                 >  1:141334/1‑212 (MQ=255)
                                                                                                                            gTCGTGACTTTTCAGGTTTTTGACGTTTTCGAGCACAAACATCGCCGGACGACGCGCGTCGATAATGCGTACCACATCAAAAAACAGC‑GTGCCCTGGGTATCGCAGGCAAAACCGTGCGCCCGCCCGAGCGAGTTCTTTTTCGATACGCCAGCCAGCGAAAATGGCTGACAAGGGAAACCGGCCAGTAAAACATCGTGTTCAGGAATGTGTTGACGAATATGTTCCGCCGCCGCCTCATCACTCACGcc                                                                                                                                                                                            <  2:1453155/249‑1 (MQ=255)
                                                                                                                            gTCGTGACTTTTCAGGTTTTTGACGTTTTCGAGCACAAACATCGCCGGACGACGCGCGTCGATAATGCGTACCACATCAAAAAACAGC‑GTGCCCTGGGTATCGCAGGCAAAACCGTGCGCCCGCCCGAGCGAGTTCTTTTTCGATACGCCAGCCAGCGAAAATGGCTGACAAGGGAAACCGGCCAGTAAAACATCGTGTTCAGGAATGTGTTGACGAATATGTTCCGCCGCCGCCTCATCACTCACGCCTTCTTTATGGCTGGGGGTGATTTCGCGGATATCTTCATTa                                                                                                                                                    >  1:1083790/1‑289 (MQ=255)
                                                                                                                            gTCGTGACTTTTCAGGTTTTTGACGTTTTCGAGCACAAACATCGCCGGACGACGCGCGTCGATAATGCGTACCACATCAAAAAACAGC‑GTGCCCTGGGTATCGCAGGCAAAACCGTGCGCCCGCCCGAGCGAGTTCTTTTTCGATACGCCAGCCAGCGAAAATGGCTGACAAGGGAAACCGGCCAGTAAAACATCGTGTTCAGGAATGTGTTGACGAATATGTTCCGCCGCCGCCTCATCACTCACGCCTTCTTTATGGCTGAGGGTGATGTCGCGGat                                                                                                                                                              <  1:1915400/279‑1 (MQ=255)
                                                                                                                            gTCGTGACTTTTCAGGTTTTTGACGTTTTCGAGCACAAACATCGCCGGACGACGCGCGTCGATAATGCGTACCACATCAAAAAACAGC‑GTGCCCTGGGTATCGCAGGCAAAACCGTGCGCCCGCCCGAGCGAGTTCTTTTTCGATACGCCAGCCAGCGAAAATGGCTGACAAGGGAAACCGGCCAGTAAAACATCGTGTTCAGGAATGTGTTGACGAATATGTTCCGACGCCGCCTCATCACTCACGCCTTCTTTATGGCTGAGGGTGATGTCGAGGATATCTTCATTa                                                                                                                                                    >  1:1112396/1‑289 (MQ=255)
                                                                                                                             tCGTGACTTTTCAGGTTTTTGACGTTTTCGAGCACAAACATCGCCGGACGACGCGCGTCGATAATGCGTACCACATCAAAAAACAGC‑GTGCCCTGGGTATCGCAGGCAAAACCGTGCGCCCGCCCGAGCGAGTTCTTTTTCGATACGCCAGCCAGCGAAAATGGCTGACAAGGGAAACCGGCCAGTAAAACATCGTGTTCAGGAATGTGTTGACGAATATGTTCCGCCGCCGCCTCATCACTCACGCCTTCTTTa                                                                                                                                                                                     >  1:1977917/1‑255 (MQ=255)
                                                                                                                             tCGTGACTTTTCAGGTTTTTGACGTTTTCGAGCACAAACATCGCCGGACGACGCGCGTCGATAATGCGTACCACATCAAAAAACAGC‑GTGCCCTGGGTATCGCAGGCAAAACCGTGCGCCCGCCCGAGCGAGTTCTTTTTCGATACGCCAGCCAGCGAAAATGGCTGACAAGGGAAACCGGCCAGTAAAACATCGTGTTCAGGAATGTGTTGACGAATATGTTCCGCCGCCGCCTCATCACTCACGCCTTCTTTATGGCTGAGGGTGATGTCGCGGATATCTTCATTa                                                                                                                                                    <  1:1894802/288‑1 (MQ=255)
                                                                                                                                 gACTTTTCAGGTTTTTGACGTTTTCGAGCACAAACATCGCCGGACGACGCGCGGCGATAATGCGTACCACATCAAAAAACAGC‑GTGCCCTGGGTATCGCAGGCAAAACCGTGCGCCCGCCCGAGCGAGTTCTTTTTCGATACGCCAGCCAGCGAAAATGGCTGACAAGGGAAACCGGCCAGTAAAACAACGTGTTCAGGAATGTGTTGACGAATATGTTCCGCCGCCGCCTCATCACTCACGCCTTCTTTATGGCCGAGGGTGATGTCGCGGATATTTTTATTAAAatg                                                                                                                                               >  1:54179/1‑289 (MQ=255)
                                                                                                                                              tttGACGTTTTCGAGCACAAACATCGCCGGACGACGCGCGTCGATAATGCGTACCACATCAAAAAACAGC‑GTGCCCTGGGTATCGCAGGCAAAACCGTGCGCCCGCCCGAGCGAGTTCTTTTTCGATACGCCAGCCAGCGAAAATGGCTGACAAGGGAAACCGGCCAGTAAAACATCGTGTTCAGGAATGTGTTGACGAATATGTTCCGCCGCCGCCTCATCACTCACGCCTTCTTTATTGCTGGGGGTGATTTCGCGGATATCTTCATTAAAATGATGCGTCGCCGGa                                                                                                                                  >  2:942866/1‑289 (MQ=255)
                                                                                                                                              tttGACGTTTTCGAGCACAAACATCGCCGGACGACGCGCGTCGATAATGCGTACCACATCAAAAAACAGC‑GTGCCCTGGGTATCGCAGGCAAAACCGTGCGCCCGCCCGAGCGAGTTCTTTTTCGATACGCCAGCCAGCGAAAATGGCTGACAAGGGAAACCGGCCAGTAAAACATCGTGTTCAGGAATGTGTTGACGAATATGTTCCGCCGCCGCCTCATCACTCACGCCTTCTTTATGGCTGAGGGTGATGTCGCGGATATCTTCATTAAAATGATGCGTCGCCGGa                                                                                                                                  >  1:160516/1‑289 (MQ=255)
                                                                                                                                              tttGACGTTTTCGAGCACAAACATCGCCGGACGACGCGCGTCGATAATGCGTACCACATCAAAAAACAGC‑ATGCCCTGGGTATCGCAGGCAAAACCGTGCGCCCGCCCGAGCGAGTTCTTTTTCGATACGCCAGCCAGCGAAAATGGCTGACAAGGGAAACCGGCCAGTAAAACATCGTGTTCAGGAATGTGTTGACGAATATGTTCCGCCGCCGCCTCATCACTCACGCCTTCTTTATGGCTGAGGGTGATGTCGCGGATATCTTCATTAAAATGATGCGTCGCCGGa                                                                                                                                  >  2:1084746/1‑289 (MQ=255)
                                                                                                                                               ttGACGTTTTCGAGCACAAACATCGCCGGACGACGCGCGTCGATAATGCGTACCACATCAAAAAACAGC‑GTGCCCTGGGTATCGCAGGCAAAACCGTGCGCCCGCCCGAGCGAGTTCTTTTTCGATACGCCAGCCAGCGAAAATGGCTGACAAGGGAAACCGGCCAGTAAAACATCGTGTTCAGGAATGTGTTGACGAATATGTTCCGCCGCCGCCTCATCACTCACGCCTTCTTTATGGCTGAGGGTGATGTCGCGGATATCTTCATTAAAATGATGCGTCGCCGGAt                                                                                                                                 <  1:731252/289‑1 (MQ=255)
                                                                                                                                               ttGACGTTTTCGAGCACAAACATCGCCGGACGACGCGCGTCGATAATGCGTACCACATCAAAAAACAGC‑GTGCCCTGGGTATCGCAGGCAAAACCGTGCGCCCGCCCGAGCGAGTTCTTTTTCGATACGCCAGCCAGCGAAAATGGCTGACAAGGGAAACCGGCCAGTAAAACATCGTGTTCAGGAATGTGTTGACGAATATGTTCCGCCGCCGCCTCATCACTCACGCCTTCTTTATGGCTGAGGGTGATGTCGCGGATATCTTCATTAAAATGATGCGTCGCCGGAt                                                                                                                                 <  2:1898720/289‑1 (MQ=255)
                                                                                                                                               tgtgcGTTTTCTACAACAAACAGCCGTGGACGCCGCGCTTCCATAATGCGTAACACATCAAAATACCGC‑GTGCCCTGCGATTCGCAGGCAGAGCCGTCCGGCCGCCCTAGCGAGTTCTTTTTCGATACGCCAGCCAGCGAAAATTGCTTACAAGGGAAGCCGACAAGTAAAACATCGTGTTCAGGAATGTGTTGACGACTATGTTCCGCCGCCGTCTCATCACTCACGCCTTCTTTATGGCTGAGTGTGATGTCGCGGATATCTTCATTAAAATGATGCGTCGCCGGAt                                                                                                                                 <  2:633469/285‑1 (MQ=255)
                                                                                                                                                    gTTTTCGAGCACAAACATCGCCGGACGACGCGCGTCGATAATGCCTACCACACCAAAAAACAGC‑GTGCCCTGGGTATCGCAGGCAAAACCGTGCGCCCGCCCGATCGAGTTCTTTTTCGATACGCCAGCCAGCGAAAATGGCTGACAAGGGAAACCGGCCAGTAAAACATCGTGTTCAGGAATGTGTTGACGAATATGTTCCGCCGCCGCCTCATCACTCACGCCTTCTTTATGGCTGAGGGTGATGTCGCGGATATCTTCATTAAAATGATGCGTCGCCGGATCGCaa                                                                                                                            <  1:100777/289‑1 (MQ=255)
                                                                                                                                                      ttccGAGCACAAACAGCGCCGGACGCCGCGCGTCGATAATGCGTACCACATCAAAAAACAGC‑GTGCCCTGGGTATCGCAGGCAAAACCGTGCGCCCGCCCGAGCGAGTTCTTTTTCGATACGCCAGCCAGCGAAAATGGCTGACAAGGGAAACCGGCCAGTAAAACATCGTGTTCAGGAATGTGTTGACGAATATGTTCCGCCGCCGCCTCATCACTCACGCCTTCTTTATGGCTGAGGGTGATGTCGCGGATATCTTCATTAAAATGATGCGTCGCCGGATCGCaata                                                                                                                          <  2:353575/286‑1 (MQ=255)
                                                                                                                                                       ttCGAGCACAAACATCGCCGGACGACGCGCGTCGATAATGCGTACCACATCAAAAAACAGC‑GTGCCCCGGGTATCGCAGGCAAAACCGTGCGCCCGCCCGAGCGAGTTCTTTTTCGATACGCCAGCCAGCGAAAATGGCTGACAAGGGAAACCGGCCAGTAAAACATCGTGTTCAGGAATGTGTTGACGAATATGTTCCGCCGCCGCCTCATCACTCACGCCTTCTTTATGGCTGAGGGTGATGTCGCGGATATCTTCATTAAAATGATGCGTCGCCGGATCGCaataa                                                                                                                         >  1:24933/1‑289 (MQ=255)
                                                                                                                                                          aaacccaAACATCGCCGGAAGACGCGCTTCGATAAGGCGAACCACATCAAAAAACAGC‑GTGCCCTGAGTATCGCAGGCAAAACCGTGCCCCCGCCCGAGCGAGTTCTTTTTCGATACGCCAGCCAGCGAAAATGGCTGACAAGGGAAACCGGCCAGTAAAACATCGTGTTCAGGAATGTGTTGACGAATATGTTCCGCCGCCGCCTCATCACTCACGCCTTCTTTATGGCTGAGGGTGATGTCGCGGATATCTTCATTAAAATGATGCGTCGCCGGATCGCAATAATgg                                                                                                                      <  2:1788198/284‑1 (MQ=255)
                                                                                                                                                            ccacaAACATCGCCGGACGACGCGCGTCGATAATGCGTACCACATCAAAAAACAGC‑GTGCCCTGGGTATCGCAGGCAAAACCGTGCGCCCGCCCGAGCGAGTTCTTTTTCGATACGCCAGCCAGCGAAAATGGCTGACAAGGGAAACCGGCCAGTAAAACATCGTGTTCAGGAATGTGTTGACGAATATGTTCCGCCGCCGCCTCATCACTCACGCCTTCTTTATGGCTGAGGGTGATGTCGCGGATATCTTCATTAAAATGATGCGTCGCCGGATCGCAATAATGGtt                                                                                                                    <  1:1573184/288‑1 (MQ=255)
                                                                                                                                                            acacaAACCTCGCCGGGCGACGCGCGGCGATAATGCGTACCCCATCAAAAAACAAC‑GTGCCCTGGGTATCGCAGGCAAAACCGTGCGCCCGCCCGAGCGAGTTCTTTTTCGATACGCCAGCCAGCGAAAATGGCTGACAAGGGAAACCGGCCAGTAAAACATCGTGTTCAGGAATGTGTTGACGAATATGTTCCGCCGCCGCCTCATCACTCACGCCTTCTTTATGGCTGAGGGTGATGTCGCGGATATCTTCATTAAAATGATGCGTCGCCGGATCGCAATAATGGtt                                                                                                                    <  2:715103/288‑1 (MQ=255)
                                                                                                                                                              acaAACATCGCCGGACGACGCGCGTCGATAATGCGTACCACATCAAAAAACAGC‑GTGCCCTGGGTATCGCAGGCAAAACCGTGCGCCCGCCCGAGCGAGTTCTTTTTCGATACGCCAGCCAGCGAAAATGGCTGACAAGGGAAACCGGCCAGTAAAACATCGTGTTCAGGAATGTGTTGACGAATATGTTCCGCCGCCGCCTCATCACTCACGCCTTCTTTATGGCTGAGGGTGATGTCGCGGATATCTTCATTAAAATGATGCGTCGCCGGATTGCAATAATGGtt                                                                                                                    <  2:1855261/287‑1 (MQ=255)
                                                                                                                                                              acaAACATCGCCGGACGACGCGCGTCGATAATGCGTACCACATCAAAAAACAGC‑GTGCCCTGGGTATCGCAGGCAAAACCGTGCGCCCGCCCGAGCGAGTTCTTTTTCGATACGCCAGCCAGCGAAAATGGCTGACAAGGGAAACCGGCCAGTAAAACATCGTGTTCAGGAATGTGTTGACGAATATGTTCCGCCGCCGCCTCATCACTCACGCCTTCTTTATGGCTGAGGGTGATGTCGCGGATATCTTCATTAAAATGATGCGTCGCCGGATCGCAATAATGGtt                                                                                                                    <  2:1973868/287‑1 (MQ=255)
                                                                                                                                                              acaAACATCGCCGGACGACGCGCGTCGATAATGCGTACCACATCAAAAAACAGC‑GTGCCCTGGGTATCGCAGGCAAAACCGTGCGCCCGCCCGAGCGAGTTCTTTTTCGATACGCCAGCCAGCGAAAATGGCTGACAAGGGAAACCGGCCAGTAAAACATCGTGTTCAGGAATGTGTTGACGAATATGTTCCGCCGCCGCCTCATCACTCACGCCTTCTTTATGGCTGAGGGTGATGTCGCGGATATCTTCATTAAAATGATGCGTCGCCGGATCGCAATAATGGTTgg                                                                                                                  <  1:590723/289‑1 (MQ=255)
                                                                                                                                                                      cGCCGGACGACGCGCGTCGATAATGCGTACCACATCAAAAAACAGC‑GTGCCCTGGGTATCGCAGGCAAAACCGTGCGCCCGCCCGAGCGAGTTCTTTTTCGATACGCCAGCCAGCGAAAATGGCTGACAAGGGAAACCGGCCAGTAAAACATCGTGTTCAGGAATGTGTTGACGAATATGTTCCGCCGCCGCCTCATCCCTCACGCCTTCTTTATGGCTGAGGGTGATGTCGCGGATATCTTCATTAAATCGATGCGACGCCGGATCCCAATAACGGGTGGCTTtaaac                                                                                                          >  2:847021/1‑286 (MQ=255)
                                                                                                                                                                            acgacgCGCGTCGATAATGCGTACCACATCAAAAAACAGC‑GTGCCCTGGGTATCGCAGGCAAAACCGTGCGCCCGCCCGAGCGAGTTCTTTTTCGATACGCCAGCCAGCGAAAATGGCTGa                                                                                                                                                                                                                                                                            >  1:1830549/1‑121 (MQ=255)
                                                                                                                                                                            acgacgCGCGTCGATAATGCGTACCACATCAAAAAACAGC‑GTGCCCTGGGTATCGCAGGCAAAACCGTGCGCCCGCCCGAGCGAGTTCTTTTTCGATACGCCAGCCAGCGAAAATGGCTGACAAGGGAAACCGGCCAGTAAAACATCGTGTTCAGGAATGTGTTGACGAATATGTTCCGCCGCCGCCTCATCACTCACGCCTTCTTTATGGCTGAGGGTGATGTCGCGGATATCTTCATTAAAATGATTCGTCCCCGGATCGCAAATATGGTTGGCTGTATAATTGCGt                                                                                                    >  2:1010437/1‑289 (MQ=255)
                                                                                                                                                                            acgacgCGCGTCGATAATGCGTACCACATCAAAAAACAGC‑GTGCCCTGGGTATCGCAGGCAAAACCGTGCGCCCGCCCGAGCGAGTTCTTTTTCGATACGCCAGCCAGCGAAAATGGCTGACAAGGGAAACCGGCCAGTAAAACATCGTGTTCAGGAATGTGTTGACGAATATGTTCCGCCGCCGCCTCATCACTCACGCCTTCTTTATGGCTGAGGGTGATGTCGCGGATATCTTCATTAAAATGATGCGTCGCCGGATCGCAATAATGGTTGGCTTtata                                                                                                           <  1:94021/282‑1 (MQ=255)
                                                                                                                                                                            acgacgCGCGTCGATAATGCGTACCACATCAAAAAACAGC‑GTGCCCTGGGTATCGCAGGCAAAACCGTGCGCCCGCCCGAGCGAGTTCTTTTTCGATACGCCAGCCAGCGAAAATGGCTGACAAGGGAAACCGGCCAGTAAAACATCGTGTTCAGGAATGTGTTGACGAATATGTTCCGCCGCCGCCTCATCACTCACGCCTTCTTTATGGCTGAGGGTGATGTCGCGGATATCTTCATTAAAATGATGCGTCGCCGGATCGCAATAATGGTTGGCTTTATAAGTGCg                                                                                                     <  1:1645537/288‑1 (MQ=255)
                                                                                                                                                                              gacgCGCGTCGATAATGCGTACCACATCAAAAAACAGC‑GTGCCCTGGGTATCGCAGGCAAAACCGTGCGCCCGCCCGAGCGAGTTCTTTTTCGATACGCCAGCCAGCGAAAATGGCTGACAAGGGAAACCGGCCAGTAAAACATCGTGTTCAGGAATGTGTTGACGAATATGTTCCGCCGCCGCCTCATCACTCACGCCTTCTTTATGGCTGAGGGTGATGTCGCGGATATCTTCATTAAAATGATGCGTCGCCGGATCGCAATAATGGTTGGCTTTATAAGTGCGTa                                                                                                   >  1:1795941/1‑288 (MQ=255)
                                                                                                                                                                                cgcgcgTCGATAATGCGTACCACATCAAAAAACAGC‑GTGCCCTGGGTATCGCAGGCAAAACCGTGCGCCCGCCCGAGCGAGTTCTTTTTCGATACGCCAGCCAGCGAAAATGGCTGACAAGGGAAACCGGCCAGTAAAACATCGTGTTCAGGAATGTGTTGACGAATATGTTCCGCCGCCGCCTCATCACTCACGCCTTCTTTGTGGCTGAGGGTGATGTCGCGGATATCTTCATTAAAATGATGCGTCGCCGGATCGCAATAATGGTTGGCTTTATAAGTGCGTAcc                                                                                                 >  1:1788926/1‑288 (MQ=255)
                                                                                                                                                                                cgcgcgTCGATAATGCGTACCACATCAAAAAACAGC‑GTGCCCTGGGTATCGCAGGCAAAACCGTGCGCCCGCCCGAGCGAGTTCTTTTTCGATACGCCAGCCAGCGAAAATGGCTGACAAGGGAAACCGGCCAGTAAAACATCGTGTTCAGGAATGTGTTGACGAATATGTTCCGCCGCCGCCTCATCACTCACGCCTTCTTTATGGCTGAGGGTGATGTCGCGGATATCTTCATTAAAATGATGCGTCGCCGGATCGCAATAATGGTTGGCTTTATAAGTGCGTACCg                                                                                                <  1:1461842/289‑1 (MQ=255)
                                                                                                                                                                                cgcgcgTCGATAATGCGTACCACATCAAAAAACAGC‑GTGCCCTGGGTATCGCAGGCAAAACCGTGCGCCCGCCCGAGCGAGTTCTTTTTCGATACGCCAGCCAGCGAAAATGGCTGACAAGGGAAACCGGCCAGTAAAACATCGTGTTCAGGAATGTGTTGACGAATATGTTCCGCCGCCGCCTCATCACTCACGCCTTCTTTATGGCTGAGGGTGATGTCGCGGATATCTTCATTAAAATGATGCGCCGCCGGACCGCAATACTGGTTGGCTTTATAAGTGCGTAcc                                                                                                 >  2:1691716/1‑288 (MQ=255)
                                                                                                                                                                                cgcgcgTCGATAATGCGTACCACATCAAAAAACAGC‑GTGCCCTGGGTATCGCAGGCAAAACCGTGCGCCCGCCCGAGCGAGTTCTTTTTCGATACGCCAGCCAGCGAAAATGGCTGACAAGGGAAACCGGCCAGTAAAACATCGTGTTCAGGAATGTGTTGACGAATATGTTCCGCCGCCGCCTCATCACTCACGCCTTCTTTATGGATGAGGGTGCTGGCGCGGATAACTTCATTAAAATGCTGCGTCGCCGGATGCCAATAATCGTTGGCTTTATAAGTgttttt                                                                                                  >  2:1422269/1‑282 (MQ=255)
                                                                                                                                                                                                gTACCACATCAAAAAACAGC‑GTGCCCTGGGTATCGCAGGCAAAACCGTGCGCCCGCCCGAGCGAGTTCTTTTTCGATACGCCAGCCAGCGAAAATGGCTGACAAGGGAAACCGGCCAGTAAAACATCGTGTTCAGGAATGTGTTGACGAATATGTTCCGCCGCCGCCTCATCACTCACGCCTTCTTTATGGCTGAGGGTGATGTCGCGGATATCTTCATTAAAATGATGCGTCGCCGGATCGCAATAATGGTTGGCTTTATAAGTGCGTACCGCATGTTTGTTCCAtt                                                                                 <  1:152425/288‑1 (MQ=255)
                                                                                                                                                                                                 tACCACATCAAAAAACAGC‑GTGCCCTGGGTATCGCAGGCAAAACCGTGCGCCCGCCCGAGCGAGTTCTTTTTCGATACGCCAGCCAGCGAAAATGGCTGACAAGGGAAACCGGCCAGTAAAACATCGTGTTCAGGAATGTGTTGACGAATATGTTCCGCCGCCGCCTCATCACTCACGCCTTCTTTATGGCTGAGGGTGATGTCGCGGATATCTTCATTAAAatgatg                                                                                                                                            >  2:1554326/1‑228 (MQ=255)
                                                                                                                                                                                                  aCCACATCAAAAAA‑AGCGGTGCCCTGGGTATCGCAGGCAAACCCGTGCGCCCGCCCGAGCGAGTTCTTTTTCGATACGCCAGCCAGCGAAAATGGCTGACAAGGGAAACCGGCCAGTAAAACATCGTGTTCAGGAATGTGTTGACGAATATGTTCCGCCGCCGCCTCATCACTCACGCCTTCTTTATGGCTGAGGGTGATGTCGCGGATATCTTCATTAAAATGATGCGTCGCCGGATCGCAATAATGGTTGGCTTTATAAGTGCGTACCGCATGTTTGTTCCATTCg                                                                               <  2:1035852/288‑1 (MQ=255)
                                                                                                                                                                                                    cacaTCAAAAAACAGC‑GTGCCCTGGGTATCGCAGGCAAAACCGTGCGCCCGCCCGAGCGAGTTCTTTTTCGATACGCCAGCCAGCGAAAATGGCTGACAAGGGAAACCGGCCAGTAAAACATCGTGTTCAGGAATGTGTTGACGAATATGTTCCGCCGCCGCCTCATCACTCACGCCTTCTTTATGGCTGAGGGTGATGTCGCGGATATCTTCATTAAAATGATGCGTCGCCGGAt                                                                                                                                 <  2:1094264/236‑1 (MQ=255)
                                                                                                                                                                                                    cacaTCAAAAAACAGC‑GTGCCCTGGGTATCGCAGGCAAAACCGTGCGCCCGCCCGAGCGAGTTCTTTTTCGATACGCCAGCCAGCGAAAATGGCTGACAAGGGAAACCGGCCAGTAAAACATCGTGTTCAGGAATGTGTTGACGAATATGTTCCGCCGCCGCCTCATCACTCACGCCTTCTTTATGGCTGAGGGTGATGTCGCGGATATCTTCATTAAAATGATGCGTCGCCGGATCGCAATTATTGTTGGCTTTATAAGTGCGTACCGTATGTTTGTTCCATTCGCTg                                                                            >  2:866972/1‑289 (MQ=255)
                                                                                                                                                                                                    cacaTCAAAAAACAGC‑GTGCCCTGGGTATCGCAGGCAAAACCGTGCGCCCGCCCGAGCGAGTTCTTTTTCGATACGCCAGCCAGCGAAAATGGCTGACAAGGGAAACCGGCCAGTAAAACATCGTGTTCAGGAATGTGTTGACGAATATGTTCCGCCGCCGCCTCATCACTCACGCCTTCTTTATGGCTGAGGGTGATGTCGCGGATATCTTCATTAAAATGATGCGTCGCCGGATCGCAATAATGGTTGGCTTTATAAGTGCGTACCGCATGTTTGTTCCATTCGCTg                                                                            >  1:269420/1‑289 (MQ=255)
                                                                                                                                                                                                     ccgtCAAAAAACAGC‑GTGCCCGGGGTATCGCAGGCAAAACCGTGCGCCCGCCCGAGCGAGTTCTTTTTCGATAAGCCAGCCAGCGAAAATGGCTGAGAAGGGAAACCGGCCAGTAAAACATCGTGTTCAGGAATGTGTTGACGAATATGTTCCGCCGCCGCCTCATCACTCACGCCTTCTTTATGGCTGATGGTGATGTCGCGGATATCTTCATTAAAATGATGCGTCGCCGGATCGCAATAATGGTTGGCTTTATAAGTGCGTACCGCATGTTTGTTCCATTCGCTgg                                                                           <  2:332358/286‑1 (MQ=255)
                                                                                                                                                                                                     acaTCAAAAAACAGC‑GTGCCCTGGGTATCGCAGGCAAAACCGTGCGCCCGCACGAGCGAGTTCTTTTTCGATACGCCAGCCAGCGAAAATGGCTGACAAGGGAAACCGGCCAGTAAAACATCGTGTTCAGGAATGTGTTGACGAATATGTTCCGCCGCCGCCTCATCACTCACGCCTTCTTTATGGCTGAGGGTGATGTCGCGGATATCTTCATTAAAATGATGCGTCGCCGGATCGCAATAATGGTTGGCTTTATAAGTGCGTACCGCATGTTTGTTCCATTCGCTgg                                                                           <  2:1484272/289‑1 (MQ=255)
                                                                                                                                                                                                     acaTAAAAAAACAGC‑GGGCCCTGGGTAGCGCAGGCAAAACCGTGCGCCCGCCCGAGCGAGTTCTTTTTCGATACGCCAGCCAGCGAAAATGGCTGACAAGGGAAACCGGCCAGTAAAACATCGTGTTCAGGAATGTGTTGACGAATATGTTCCGCCGCCGCCTCATCACTCACGCCTTCTTTATGGCTGAGGGTGATGTCGCGGATATCTTCATTAAAATGATGCGTCGCCGGATCGCAATAATGGTTGGCTTTATAAGTGCGTACCGCATGTTTGTTCCATTCGCTgg                                                                           <  2:1211557/289‑1 (MQ=255)
                                                                                                                                                                                                         cAAAACACAGC‑GTGCCCGGGGTATCGCAGGCAAAGCCGTGCGCCCGCCCGAGCGAGTTCTTTTTCGATACGCCAGCCAGCGAAAATGGCTGACAAGGGAAACCGGCCAGTAAAACATCGTGTTCAGGAATGTGTTGACGAATATGTTCCGCCGCCGCCTCATCACTCACGCCTTCTTTATGGCTGAGGGTGATGTCGCGGATATCTTCATTAAAATGATGCGTCGCCGGATCGCAATAATGGTTGGCTTTATAAGTGCGTACCGCATGTTTGTTCCATTCGCTGGTaaa                                                                       <  2:267536/289‑1 (MQ=255)
                                                                                                                                                                                                         cAAAAAACAGC‑GTGCCCTGGGTATCGCAGGCAAAACCGTGCGCCCGCCCGAGCGAGTTCTTTTTCGATACGCCAGCCAGCGAAAATGGCTGACAAGGGAAACCGGCCAGTAAAACATCGTGTTCAGGAATGTGTTGACGAATATGTTCCGCCGCCGCCTCATCACTCACGCCTTCTTTATGGCTGAGGGTGATGTCGCGGatat                                                                                                                                                            >  1:1447126/1‑204 (MQ=255)
                                                                                                                                                                                                             aaaCAGC‑GAGCCCTGGGTATCGCAGGCAAAACCGTGCGCCCGCCCGAGCGAGTTCTTTTTCGATACGCCAGACAGCGAAAAAGGGTGACAAGGGAAACCGGCCAGTAAAACATCGTGTTCAGGAATGTGTTGACGAATATGTTCCGCAGCCGCCTCATCACTCACGCCTTCTTTATGGCTGAGGGTGATGTCGCGGATATCTTCATTAAAATGATGCGTCGCCGGATCGCAATAATGGTTGGCTTTATAAGTGCGTACCGCATGTTTGTTCCATTCGCTGGTAAACACg                                                                   <  1:1091847/289‑1 (MQ=255)
                                                                                                                                                                                                                 aGC‑GTGCCCTGGGTATCGCAGGCAAAACCGTGCGCCCGCCCGAGCGAGTTCTTTTTCGATACGCCAGCCAGCGAAAATGGCTGACAAGGGAAACCGGCCAGTAAAACATCGTGTTCAGGAATGTGTTGACGAATATGTTCCGCCGCCGCCTCATCACTCACGCCTTCTTTATGGCTGAGGGTGATGTCGCGGATATCTTCATTAAAATGATGCGTCGCCGGATCGCAATAATGGTTGGCTTTATAAGTGCGTACCGCATGTTTGTTCCTTTCGCTGGTAAACACGc                                                                  >  1:98285/1‑286 (MQ=255)
                                                                                                                                                                                                                  gC‑GTGCCCTGGGTATCGCAGGCAAAACCGTGCGCCCGCCCGAGCGAGTTCTTTTTCGATACGCCAGCCAGCGAAAATGGCTGACAAGGGAAACCGGCCAGTAAAACATCGTGTTCAGGAATGTGTTGACGAATATGTTCCGCCGCCGCCTCATCACTCACGCCTTCTTTATGGCTGAGGGTGATGTCGCGGATATCTTCATTAAAATGATGCGTCGCCGGATCGCAATAATGGTTGGCTTTATAAGTGCGTACCGCATGTTTGTTCCATTCGCTgg                                                                           <  1:616987/276‑1 (MQ=255)
                                                                                                                                                                                                                   c‑GTGCCCTGGGTATCGCAGGCAAAACCGTGCGCCCGCCCGAGCGAGTTCTTTTTCGATACGCCAGCCAGCGAAAATGGCTGACAAGGGAAACCGGCCAGTAAAACATCGTGTTCAGGAATGTGTTGACGAATATGTTCCGCCGCCGCCTCATCACTCACGCCTTCTTTATGGCTGAGGGTGATGTCGCGGATATCTTCATTAAAATGATGCGTCGCCGGATCGCAATAATGGTTGGCTTTATAAGTGCg                                                                                                     >  2:1074239/1‑249 (MQ=255)
                                                                                                                                                                                                                   c‑GTGCCCTGGGTATCGCAGGCAAAACCGTGCGCCCGCCCGAGCGAGTTCTTTTTCGATACGCCAGCCAGCGAAAATGGCTGACAAGGGAAACCGGCCAGTAAAACATCGTGTTCAGGAATGTGTTGACGAATATGTTCCGCCGCCGCCTCATCACTCACGCCTTCTTTATGGCTGAGGGTGATGTCGCGGATATCTTCATTAAAATGATGCGTCGCCGGATCGCAATAATGGTTGGCTTTATAAGTGCg                                                                                                     <  1:1074239/249‑1 (MQ=255)
                                                                                                                                                                                                                     gTGCCGTGGGTATCGCAGGCAAAACCGTGCGCCCGCCCGAGCGAGTTCTTTTTCGATACGCCAGCCAGCGAAAATGGCTGACAAGGGAAACCGGCCAGTAAAACATCGTGTTCAGGAATGTGTTGACGAATATGTTCCGCCGCCGCCTCATCACTCACGCCTTCTTTATGGCTGAGGGTGATGTCGCGGATATCTTCATTAAAATGATGCGTCGCCGGATCGCAATAATGGTTGGCTTTATAAGTGCGTACCGCATGTTTGTTCCATTCGCTGGTAAACACGCACTGt                                                             <  1:1968672/288‑1 (MQ=255)
                                                                                                                                                                                                                        cccTGGGTATCGCAGGCAAAACCGTGCGCCCGCCCGAGCGAGTTCTTTTTCGATACGCCAGCCAGCGAAAATGGCTGACAAGGGAAACCGGCCAGTAAAACATCGTGTTCAGGAATGTGTTGACGAATATGTTCCGCCGCCGCCTCATCACTCACGCCTTCTTTATGGCTGAGGGTGATGTCGCGGATATCTTCATTAAAATGATGCGTCGCCGGATCGCAATAATGGTTGGCTTTATAAGTGCGTACCGCATGTTTGTTCCATTCGCTGGTAAACACGCACTGTCCg                                                          <  2:1864051/288‑1 (MQ=255)
                                                                                                                                                                                                                                       gCAAAACCGTGCGCCCGCCCGAGCGAGTTCTTTTTCGATACGCCAGCCAGCGAAAATGGCTGACAAGGGAAACCGGCCAGTAAAACATCGTGTTCAGGAATGTGTTGACGAATATGTTCCGCCGCCGCCTCATCACTCACGCCTTCTTTATGGCTGAGGGTGATGTCGCGGATATCTTCATTAAAATGATGCGTCGCCGGATCGCAATAATGGTTGGCTTTATAAGTGCGTACCGCATGTTTGTTCCATTCGCTGGTAAACACGCACTGTCCGCCAATCGATTCaaaa                                           >  2:677557/1‑288 (MQ=255)
                                                                                                                                                                                                                                       gCAAAACCGTGCGCCCGCCCGAGCGAGTTCTTTTTCGATACGCCAGCCAGCGAAAATGGCTGACAAGGGAAACCGGCCAGTAAAACATCGTGTTCAGGAATGTGTTGACGAATATGTTCCGCCGCCGCCTCATCACTCACGCCTTCTTTATGGCTGAGGGTGATGTCGCGGATATCTTCATTAAAATGATGCGTCGCCGGATCGCAATAATGGTTGGCTTTATAAGTGCGTACCGCATGTTTGTTCCATTCGCTGGTAAACACGCACTGTCCGCCAATCGATTCaaaa                                           >  2:699243/1‑288 (MQ=255)
                                                                                                                                                                                                                                                  cgcccgccCGAGCGAGTTCTTTTTCGATACGCCAGCCAGCGAAAATGGCTGACAAGGGAAACCGGCCAGTAAAACATCGTGTTCAGGAATGTGTTGACGAATATGTTCCGCCGCCGCCTCATCACTCACGCCTTCTTTATGGCTGAGGGTGATGTCGCGGATATCTTCATTAAAATGATGCGTCGCCGGATCGCAATAATGGTTGGCTTTATAAGTGCGTACCGCATGTTTGTTCCATTCGCTGGTAAACACGCACTGTCCGCCAATCGATTCAAAACCGCGACGGAt                                >  2:1404693/1‑288 (MQ=255)
                                                                                                                                                                                                                                                      cgcccgAGCGAGTTCTTTTTCGATACGCCAGCCAGCGAAAATGGCTGACAAGGGAAACCGGCCAGTAAAACATCGTGTTCAGGAATGTGTTGACGAATATGTTCCGCCGCCGCCTCATCACTCACGCCTTCTTTATGGCTGAGGGTGATGTCGCGGATATCTTCATTAAAATGATGCGTCGCCGGATCGCAATAATGGTTGGCTTTATAAGTGCGTACCGCATGTTTGTTCCATTCGCTGGTAAACACGCACTGTCCGCCAATCGATTCAAAACCGCGACGGATgccgc                           <  1:1708554/289‑1 (MQ=255)
                                                                                                                                                                                                                                                                   tCTTTTTCGATACGCCAGCCAGCGAAAATGGCTGACAAGGGAAACCGGCCAGTAAAACATCGTGTTCAGGAATGTGTTGACGAATATGTTCCGCCGCCGCCTCATCACTCACGCCTTCTTTATGGCTGAGGGTGATGTCGCGGATATCTTCATTAAAATGATGCGTCGCCGGATCGCAATAATGGTTGGCTTTATAAGTGCGTACCGCATGTTTGTTCCATTCGCTGGTAAACACGCACTGTCCGCCAATCGATTCAAAACCGCGACGGATGCCGCCAATTCCGGCGaa              <  1:286005/289‑1 (MQ=255)
                                                                                                                                                                                                                                                                   tCTTTTTCGATACGCCAGCCAGCGAAAATGGCTGACAAGGGAAACCGGCCAGTAAAACATCGTGTTCAGGAATGTGTTGACGAATATGTTCCGCCGCCGCCTCATCACTCACGCCTTCTTTATGGCTGAGGGTGATGTCGCGGATATCTTCATTAAAATGATGCGTCGCCGGATCGCAATAATGGTTGGCTTTATAAGTGCGTACCGCATGTTTGTTCCATTCGCTGGTAAACACGCACTGTCCGCCAATCGATTCAAAACCGCGACGGATGCCGCCAATTCCGGCGaa              <  1:993526/289‑1 (MQ=255)
                                                                                                                                                                                                                                                                       tttcgatACGCCAGCCAGCGAAAATGGCTGACAAGGGAAACCGGCCAGTAAAACATCGTGTTCAGGAATGTGTTGACGAATATGTTCCGCCGCCGCCTCATCACTCACGCCTTCTTTATGGCTGAGGGTGATGTCGCGGATATCTTCATTAAAATGATGCGTCGCCGGATCGCAATAATGGTTGGCTTTATAAGTGCGTACCGCATGTTTGTTCCATTCGCTGGTAAACACGCACTGTCCGCCAATCGATTCAAAACCGCGACGGATGCCGCCAATTCCGGCGAATAGa          >  1:1693277/7‑289 (MQ=255)
                                                                                                                                                                                                                                                                        ttcgatACGCCAGCCAGCGAAAATGGCTGACAAGGGAAACCGGCCAGTAAAACATCGTGTTCAGGAATGTGTTGACGAATATGTTCCGCCGCCGCCTCATCACTCACGCCTTCTTTATGGCTGAGGGTGATGTCGCGGATATCTTCATTAAAATGATGCGTCGCCGGATCGCAATAATGGTTGGCTTTATAAGTGCGTACCGCATGTTTGTTCCATTCGCTGGTAAACACGCACTGTCCGCCAATCGATTCAAAACCGCGACGGATGCCGCCAATTCCGGCGAATAGAt         <  2:557597/284‑1 (MQ=255)
                                                                                                                                                                                                                                                                                         |||                                                                                                                                                                                                                                                                                    
GCTGCGGCAGAAAATGTTTGCCGTCGATGATTTTCGGATCGTCTGGCCCATTATCTTCTGCATCAGCCACGTCATAGCCCAGTTCGTCCAGCGTCTGCATGATGATGCGGAACGTTTTACCCTGGTCGTGACTTTTCAGGTTTTTGACGTTTTCGAGCACAAACATCGCCGGACGACGCGCGTCGATAATGCGTACCACATCAAAAAACAGC‑GTGCCCTGGGTATCGCAGGCAAAACCGTGCGCCCGCCCGAGGCTGTTCTTTTTGCTTACGCCAGCCAGGCTAAATGGCTGACAAGGGAAACCGGCCAGTAAAACATCGTGTTCAGGAATGTGTTGACGAATATGTTCCGCCGCCGCCTCATCACTCACGCCTTCTTTATGGCTGAGGGTGATGTCGCGGATATCTTCATTAAAATGATGCGTCGCCGGATCGCAATAATGGTTGGCTTTATAAGTGCGTACCGCATGTTTGTTCCATTCGCTGGTAAACACGCACTGTCCGCCAATGCTTTCAAAACCGCGACGGATGCCGCCAATTCCGGCGAATAGATCGATAAA  >  CP042583/1669018‑1669576

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A