Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A6 F210 I1 R1 4928 340.1 5480506 96.9% 5310610 252.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA CP042583 578,209 3 bp→TCG intergenic (–/–) – / – –/–

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP042583578,2090AT99.6% 639.6 / NA 270intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base A (0/0);  major base T (104/164);  minor base G (1/0);  total (106/164)
Fisher's exact test for biased strand distribution p-value = 3.90e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*CP042583578,2100GC98.9% 630.0 / NA 270intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base G (0/3);  new base C (106/159);  total (106/164)
Fisher's exact test for biased strand distribution p-value = 2.80e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*CP042583578,2110CG99.6% 642.2 / NA 270intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base C (1/0);  new base G (105/164);  total (106/164)
Fisher's exact test for biased strand distribution p-value = 3.93e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 270 total aligned reads displayed.

ATTCGCCAGCAAAGCGGTGGGTGACGGTGTGGCGGTGAAACCGACAGATAAAATCGTCGTAAGTCCAGCCGCAGGGACAATCGTGAAAATCTTCAACACCAACCACGCGTTCTGCCTGGAAACCGAAAAAGGCGCGGAGATCGTCGTCCATATGGGTATCGACACCGTAGCGCTGGAAGGTAAAGGCTTTAAACGTCTGGTGGAAGAGGGTGCGCAGGTAAGCGCAGGGCAACCGATTCTGGAAATGGATCTGGATTACCTGAACGCTAACGCCCGCAGCATGATTAGCCCGGTGGTTTGCAGCAATATCGACGATTTCAGTGGCTTGATCATTAAAGCTCAGGGCCATATTGTGGCGGG‑TCAAACACCGCTGTATGAAATCAAAAAGTAATCTGCTTTATGCCTGATGCGACGCTTGAGCGTCGCATCCAAC‑AATGACAAGCGGTGGAGATCTTCTCTG‑CCGC‑TTTTTTTTTCATCAATCATCCCCATAATCCTTGTTAGATTATCAATTTTAAAAAACTAACAGTTGTCAGCCTGTCCCGCTTATAAGATCATACG  >  CP042583/577932‑578489
                                                                                                                                                                                                                                                                                     |||                                                                                                                                                                                                                                                                                          
aTTCGCCAGCAAAGCGGTGGGTGACGGTGTGGCGGTGAAACCGACAGATAAAATCGTCGTATCACCAGCCGCAGGGACAATCGTGAAAATCTTCAACACCAACCACGCGTTCTGCCTGGAAACCGAAAAAGGCGCGGAGATCGTCGTCCATATGGGTATCGACACCGTAGCGCTGGAAGGTAAAGGCTTTAAACGTCTGGTGGAAGAGGGTGCGCAGGTAAGCGCAGGGCAACCGATTCTGGAAATGGATCTGGATTACCTGAACGCTAACGCCCGCTCGATGATTAg                                                                                                                                                                                                                                                                                    >  1:1379847/1‑288 (MQ=255)
   cGCCAGCAAAGCGGTGGGTGACGGTGTGGCGGTGAAACCGACAGATAAAATCGTCGTATCACCAGCCGCAGGGACAATCGTGAAAATCTTCAACACCAACCACGCGTTCTGCCTGGAAACCGAAAAAGGCGCGGAGATCGTCGTCCATATGGGTATCGACACCGTAGCGCTGGAAGGTAAAGGCTTTAAACGTCTGGTGGAAGAGGGTGCGCAGGTAAGCGCAGGGCAACCGATTCTGGAAATGGATGTGGATTACCTGAACGCTAACGACCGCTCGATGATTAGCCCg                                                                                                                                                                                                                                                                                >  1:2528348/1‑289 (MQ=255)
   cGCCAGCAAAGCGGTGGGTGACGGTGTGGCGGTGAAACCGACAGATAAAATCGTCGTATCACCAGCCGCAGGGACAATCGTGAAAATCTTCAACACCAACCACGCGTTCTGCCTGGAAACCGAAAAAGGCGCGGAGATCGTCGTCCATATGGGTATCGACACCGTAGCGCTGGAAGGTAAAGGCTTTAAACGTCTGGTGGAAGAGGGTGCGCAGGTAAGCGCAGGGCAACCGATTCTGGAAATGGATCTGGATTACCTGAACGCTAACGCCCGCTCGATGATTAGCCCg                                                                                                                                                                                                                                                                                >  1:1889085/1‑289 (MQ=255)
       aGCAAAGCGGTGGGTGACGGTGTGGCGGTGAAACCGACAGATAAAATCGTCGTATCACCAGCCGCAGGGACAATCGTGAAAATCTTCAACACCAACCACGCGTTCTGCCTGGAAACCGAAAAAGGCGCGGAGATCGTCGTCCATATGGGTATCGACACCGTAGCGCTGGAAGGTAAAGGCTTTAAACGTCTGGTGGAAGAGGGTGCGCAGGTAAGCGCAGGGCAACCGATTCTGGAAATGGATCTGGATTACCTGAACGCAAACGCCCGCCCGATGATTAGGCCggtgg                                                                                                                                                                                                                                                                            >  2:380365/1‑289 (MQ=255)
          aaaGCGGTGGGTGACGGTGTGGCGGTGAAACCGACAGATAAAATCGTCGTATCACCAGCCGCAGGGACAATCGTGAAAATCTTCAACACCAACCACGCGTTCTGCCTGGAAACCGAAAAAGGCGCGGAGATCGTCGTCCATATGGGTATCGACACCGTAGCGCTGGAAGGTAAAGGCTTTAAACGTCTGGTGGAAGAGGGTGCGCAGGTAAGCGCAGGGCAACCGATTCTGGAAATGGATCTGGATTACCTGAACGCTAACGCCCGCTCGATGATTAGCCCGGTGGtt                                                                                                                                                                                                                                                                          <  2:40560/288‑1 (MQ=255)
               ggtgggtgACGGTGTGGCGGTGAAACCGACAGATAAAATCGTCGTATCACCAGCCGCAGGGACAATCGTGAAAATCTTCAACACCAACCACGCGTTCTGCCTGGAAACCGAAAAAGGCGCGGAGATCGTCGTCCATATGGGTATCGACACCGTAGCGCTGGAAGGTAAAGGCTTTAAACGTCTGGTGGAAGAGGGTGCGCAGGTAAGCGCAGGGCAACCGATTCTGGAAATGGATCTGGATTACCTGAACTCTAACGCCCGCTCGATGATTAGCCCGGTGGTTTgcag                                                                                                                                                                                                                                                                     <  1:1603254/288‑1 (MQ=255)
                      gACGGTGTGGCGGTGAAACCGACAGATAAAATCGTCGTATCACCAGCCGCAGGGACAATCGTGAAAATCTTCAACACCAACCACGCGTTCTGCCTGGAAACCGAAAAAGGCGCGGAGATCGTCGTCCATATGGGTATCGACACCGTAGCGCTGGAAGGTAAAGGCTTTAAACGTCTGGTGGAAGAGGGTGCGCAGGTAAGCGCAGGGCAACCGATTCTGGAAATGGATCTGGATTACCTGAACGCTAACGCCCGCTCGATGATTAGCCCGGTGGTTTGCAGCAATATc                                                                                                                                                                                                                                                              <  1:538686/288‑1 (MQ=255)
                       gaggTGTGGCGGTGGAACCGACAGAAAAAATCGTCGTATCACCAGCCGCAGGGACAATCGTGAAAATCTTCAACACCAACCACGCGTTCTGCCTGGAAACCGAAAAAGGCGCGGAGATCGTCGTCCATATGGGTATCGACACCGTAGCGCTGGAAGGTAAAGGCTTTAAACGTCTGGTGGAAGAGGGTGCGCAGGTAAGCGCAGGGCAACCGATTCTGGAAATGGATCTGGATTACCTGAACGCTAACGCCCGCTCGATGATTAGCCCGGTGGTTTGCAGCAATATcg                                                                                                                                                                                                                                                             <  2:549161/286‑1 (MQ=255)
                        aggTGTGGGGGTGAAACCGACAGATAAAATCGTCGTAACACCAGCCGCAGGGACAATCGTGAAAATCTTCAACACCAACCACGCGTTCTGCCTGGAAACCGAAAAAGGCGCGGAGATCGTCGTCCATATGGGTATCGACACCGTAGCGCTGGAAGGTAAAGGCTTTAAACGTCTGGTGGAAGAGGGTGCGCAGGTAAGCGCAGGGCAACCGATTCTGGAAATGGATCTGGATTACCTGAACGCTAACGCCCGCTCGATGATTAGCCCGGTGGTTTGCAGCAATATcgac                                                                                                                                                                                                                                                           <  1:1135429/288‑1 (MQ=255)
                                 ggTGAAACCGACAGATAAAATCGTCGTATCACCAGCCGCAGGGACAATCGTGAAAATCTTCAACACCAACCACGCGTTCTGCCTGGAAACCGAAAAAGGCGCGGAGATCGTCGTCCATATGGGTATCGACACCGTAGCGCTGGAAGGTAAAGGCTTTAAACGTCTGGTGGAAGAGGGTGCGCAGGTAAGCGCAGGGCAACCGATTCTGGAAATGGATCTGGATTACCTGAACGCTAACGCCCGCTCGATGATTAGCCCGGTGGTTTGCAGCAATATCGACGATTTCAg                                                                                                                                                                                                                                                   <  1:664947/288‑1 (MQ=255)
                                 ggTGAAACCGACAGATAAAATCGTCGTATCACCAGCCGCAGGGACAATCGTGAAAATCTTCAACACCAACCACGCGTTCTGCCTGGAAACCGAAAAAGGCGCGGAGATCGTCGTCCATATGGGTATCGACACCGTAGCGCTGGAAGGTAAAGGCTTTAAACGTCTGGTGGAAGAGGGTGCGCAGGTAAGCGCAGGGCAACCGATTCTGGAAATGGATCTGGATTACCTGAACGCTAACGCCCGCTCGATGATTAGCCCGGTGGTTTGCAGCAATATCGACGATTTCAGt                                                                                                                                                                                                                                                  <  1:983326/289‑1 (MQ=255)
                                     aaaCCGACAGATAAAATCGTCGTATCACCAGCCGCAGGGACAATCGTGAAAATCTTCAACACCAACCACGCGTTCTGCCTGGAAACCGAAAAAGGCGCGGAGATCGTCGTCCATATGGGTATCGACACCGTAGCGCTGGAAGGTAAAGGCTTTAAACGTCTGGTGGAAGAGGGTGCGCAGGTAAGCGCAGGGCAACCGATTCTGGAAATGGATCTGGATTACCTGAACGCTAACGCCCGCTCGATGATTAGCCCGGTGGTTTgcag                                                                                                                                                                                                                                                                     >  1:2060350/1‑266 (MQ=255)
                                     aaaCCGACAGATAAAATCGTCGTATCACCAGCCGCAGGGACAATCGTGAAAATCTTCAACACCAACCACGCGTTCTGCCTGGAAACCGAAAAAGGCGCGGAGATCGTCGTCCATATGGGTATCGACACCGTAGCGCTGGAAGGTAAAGGCTTTAAACGTCTGGTGGAAGAGGGTGCGCAGGTAAGCGCAGGGCAACCGATTCTGGAAATGGATCTGGATTACCTGAACGCTAACGCCCGCTCGATGATTAGCCCGGTGGTTTGCAGCAATATCGACGATTTCAGTGGCt                                                                                                                                                                                                                                              >  1:396706/1‑289 (MQ=255)
                                     aaaCCGACAGATAAAATCGTCGTATCACCAGCCGCAGGGACAATCGTGAAAATCTTCAACACCAACCACGCGTTCTGCCTGGAAACCGAAAAAGGCGCGGAGATCGTCGTCCATATGGGTATCGACACCGTAGCGCTGGAAGGTAAAGGCTTTAAACGTCTGGTGGAAGAGGGTGCGCAGGTAAGCGCAGGGCAACCGATTCTGGAAATGGATCTGGATTACCTGAACGCTAACGCCCGCTCGATGATTAGCCCGGTGGTTTGCAGCAATATCGACGATTTCAGTGGCt                                                                                                                                                                                                                                              >  1:256863/1‑289 (MQ=255)
                                       aCCGACAGATAAAATCGTCGTATCACCAGCCGCAGGGACAATCGTGAAAATCTTCAACACCAACCACGCGTTCTGCCTGGAAACCGAAAAAGGCGCGGAGATCGTCGTCCATATGGGTATCGACACCGTAGCGCTGGAAGGTAAAGGCTTTAAACGTCTGGTGGAAGAGGGTGCGCAGGTAAGCGCAGGGCAACCGATTCTGGAAATGGATCTGGATTACCTGAACGCTAACGCCCGCTCGATGATTAGCCCGGTGGTTTGCAGCAATATCGACGATTTCAGTGGCTTg                                                                                                                                                                                                                                            >  1:2324415/1‑289 (MQ=255)
                                               aTAAAATCGTCGTATCACCAGCCGCAGGGACAATCGTGAAAATCTTCAACACCAACCACGCGTTCTGCCTGGAAACCGAAAAAGGCGCGGAGATCGTCGTCCATATGGGTATCGACACCGTAGCGCTGGAAGGTAAAGGCTTTAAACGTCTGGTGGAAGAGGGTGCGCAGGTAAGCGCAGGGCAACCGATTCTGGAAATGGATCTGGATTACCTGAACGCTAACGCCCGCTCGATGATTAGCCCGGTGGTTTGCAGCAATATCGACGATTTCAGTGGc                                                                                                                                                                                                                                               >  1:1663858/1‑278 (MQ=255)
                                               aTAAAATCGTCGTATCACCAGCCGCAGGGACAATCGTGAAAATCTTCAACACCAACCACGCGTTCTGCCTGGAAACCGAAAAAGGCGCGGAGATCGTCGTCCATATGGGTATCGACACCGTAGCGCTGGAAGGTAAAGGCTTTAAACGTCTGGTGGAAGAGGGTGCGCAGGTAAGCGCAGGGCAACCGATTCTGGAAATGGATCTGGATTACCTGAACGCTAACGCCCGCTCGATGATTAGCCCGGTGGTTTGCAGCAATATCGACGATTTCAGTGGc                                                                                                                                                                                                                                               <  2:1663858/278‑1 (MQ=255)
                                                   aacggtcggatcaccAGCCCAAGTGACAAACGTGAAAATCCTCAACCCCAACCCCGCGTTCTGCCTGGAAACCGAAAAAGGCGCGGAGATCGTCGTCCATATGGGTGTCGACACCGTAGCGCTGGAAGGTAAAGGCTTTAAACGTCTGGTGGAAGAGGGTGCGCAGGTAAGCGCAGGGCAACCGATTCTGGAAATGGATCTGGATTACCTGAACGCTAACGCCCGCTCGATGATTAGCCCGGTGGTTTGCAGCAATATCGACGATTTCAGTGGCTTGATCATTAAAGCt                                                                                                                                                                                                                                <  2:240030/276‑1 (MQ=255)
                                                   aaTCGTCGTATCACCAGCCGCAGGGACAATCGTGAAAATCTTCAACACCAACCACGCGTTCTGCCTGGAAACCGAAAAAGGCGCGGAGATCGTCGTCCATATGGGTATCGACACCGTAGCGCTGGAAGGTAAAGGCTTTAAACGTCTGGTGGAAGAGGGTGCGCAGGTAAGCGCAGGGCAACCGATTCTGGAAATGGATCTGGATTACCTGAACGCTAACGCCCGCTCGATGATTAGCCCGGTGGTTTGCAGCAATATCGACGATTTCAGTGGCTTGATCATTAAAGCt                                                                                                                                                                                                                                <  1:2461642/289‑1 (MQ=255)
                                                     tcgtcgTATCACCAGCCGCAGGGACAATCGTGAAAATCTTCAACACCAACCACGCGTTCTGCCTGGAAACCGAAAAAGGCGCGGAGATCGTCGTCCATATGGGTATCGACACCGTAGCGCTGGAAGGTAAAGGCTTTAAACGTCTGGTGGAAGAGGGTGCGCAGGTAAGCGCAGGGCAACCGATTCTGGAAATGGATCTGGATTACCTGAACGCTAACGCCCGCTCGATGATTAGCCCGGTGGTTTGCAGCAATATCGACGATTTCAGTGGCTTGATCATTAAAGCTCa                                                                                                                                                                                                                              <  1:328321/289‑1 (MQ=255)
                                                       gtcgtatcaccAGCCGCAGGGACAATCGTGAAAATCTTCAACACCAACCACGCGTTCTGCCTGGAAACCGAAAAAGGCGCGGAGATCGTCGTCCATATGGGTATCGACACCGTAGCGCTGGAAGGTAAAGGCTTTAAACGTCTGGTGGAAGAGGGTGCGCAGGTAAGCGCAGGGCAACCGATTCTGGAAATGGATCTGGATTACCTGAACGCTAACGCCCGCGCGATGATTAGCCCGGTGGTTTGCAGCAATATCGCCGATTTCAGGTGCTTCATAAGTAAACCTCAgg                                                                                                                                                                                                                            >  2:2596747/10‑289 (MQ=255)
                                                         cgtatcaccAGCCGCAGGGACAATCGTGAAAATCTTCAACACCAACCACGCGTTCTGCCTGGAAACCGAAAAAGGCGCGGAGATCGTCGTCCATATGGGTATCGACACCGTAGCGCTGGAAGGTAAAGGCTTTAAACGTCTGGTGGAAGAGGGTGCGCAGGTAAGCGCAGGGCAACCGATTCTGGAAATGGATCTGGATTACCTGAACGCTAACGCCCGCTCGATGATTAGCCCGGTGGTTTGCAGCAATATCGACGATTTCAGTGGCTTGATCATTAAAGCTCAggg                                                                                                                                                                                                                           <  1:1730876/281‑1 (MQ=255)
                                                         cgtatcaccAGCCGCAGGGACAATCGTGAAAATCTTCAACACCAACCACGCGTTCTGCCTGGAAACCGAAAAAGGCGCGGAGATCGTCGTCCATATGGGTATCGACACCGTAGCGCTGGAAGGTAAAGGCTTTAAACGTCTGGTGGAAGAGGGTGCGCAGGTAAGCGCAGGGCAACCGATTCTGGAAATGGATCTGGATTACCTGAACGCTAACGCCCGCTCGATGATTAGCCCGGTGGTTTGCAGCAATATCGACGATTTCAGTGGCTTGATCATTAAAGCTCAggg                                                                                                                                                                                                                           >  2:1730876/8‑288 (MQ=255)
                                                                   gCCGCAGGGACAATCGTGAAAATCTTCAACACCAACCACGCGTTCTGCCTGGAAACCGAAAAAGGCGCGGAGATCGTCGTCCATATGGGTATCGACACCGTAGCGCTGGAAGGTAAAGGCTTTAAACGTCTGGTGGAAGAGGGTGCGCAGGTAAGCGCAGGGCAACCGATTTCGGAAATGGATCTGGATTACCTGAACGCTAACGCCCGCTCGATGATTATCCCGGTGGTTTGCAGCAATATCGACGATGGCAGTGGCTTGATCATTAAAGCCATTGGGCATATtgtt                                                                                                                                                                                                                 >  2:294816/1‑287 (MQ=255)
                                                                   gCCGCAGGGACAATCGTGAAAATCTTCAACACCAACCACGCGTTCTGCCTGGAAACCGAAAAAGGCGCGGAGATCGTCGTCCATATGGGTATCGACACCGTAGCGCTGGAAGGTAAAGGCTTTAAACGTCTGGTGGAAGAGGGTGCGCAGGTAAGCGCAGGGCAACCGATTCTGGAAATGGATCTGGATTACCTGAACGCTAACGCCCGCTCGATGATTAGCCCGGTGGTTTGCAGCAATGTCGACGATTTCAGTGGCTTGATCATTAAAGCt                                                                                                                                                                                                                                <  2:74356/273‑1 (MQ=255)
                                                                   gCCGCAGGGACAATCGTGAAAATCTTCAACACCAACCACGCGTTCTGCCTGGAAACCGAAAAAGGCGCGGAGATCGTCGTCCATATGGGTATCGACACCGTAGCGCTGGAAGGTAAAGGCTTTAAACGTCTGGTGGAAGAGGGTGCGCAGGTAAGCGCAGGGCAACCGATTCTGGAAATGGATCTGGATTACCTGAACGCTAACGCCCGCTCGATGATTAGCCCGGTGGTTTGCAGCAATGTCGACGATTTCAGTGGCTTGATCATTAAAGCt                                                                                                                                                                                                                                >  1:74356/1‑273 (MQ=255)
                                                                     cGCAGGGACAATCGTGCAAAACTTCAACACCAACCACGCGTTCTGCCTGGAAACCGAAAAAGGCGCGGAGATCGTCGGCCATATGGGTATCGACACCGTAGCGCTGGAAGGTAAAGGCTTTAAACGTCTGGTGGAAGAGGGTGCGCAGGTAAGCGAAGGGCAACCGATTCTGGAAATGGATCTGGATTACCTGAACGCTAACGCCCGCTCGATGATTAGCCCGGTGGTTTGCAGCAATATCGACGATTTCAGTGGCTTGATCATTAAAGCTCAGGGCCATATTGTGGc                                                                                                                                                                                                               <  2:1966398/288‑1 (MQ=255)
                                                                       cAGGGACAATCGTGAAAATCTTCAACACCAACCACGCGTTCTGCCTGGAAACCGAAAAAGGCGCGGAGATCGTCGTCCATATGGGTATCGACACCGTAGCGCTGGAAGGTAAAGGCTTTAAACGTCTGGTGGAAGAGGGTGCGCAGGTAAGCGCAGGGCAACCGATTCTGGAAATGGATCTGGATTACCTGAACGCTAACGCCCGCTCGATGATTAGCCCGGTGGTTTGCAGCAATATCGACGATTTCAGTGGCTTGATCATTAAAGCTCAGGGCCATATTGTGGCggg                                                                                                                                                                                                            >  1:1010930/1‑289 (MQ=255)
                                                                          ggACAATCGTGAAAATCTTCAACACCAACCACGCGTTCTGCCTGGAAACCGAAAAAGGCGCGGAGATCGTCGTCCATATGGGTATCGACACCGTAGCGCTGGAAGGTAAAGGCTTTAAACGTCTGGTGGAAGAGGGTGCGCAGGTAAGCGCAGGGCAACCGATTCTGGAAATGGATCTGGATTACCTGAACGCTAACGCCCGCTCGATGATTAGCCCGGTGGTTTGCAGCAATATCGACGATTTCAGTGGCTTGATCATTAAAGCTCa                                                                                                                                                                                                                              <  2:1201135/268‑1 (MQ=255)
                                                                           gACAATCGTGAAAATCTTCAACACCAACCACGCGTTCTGCCTGGAAACCGAAAAAGGCGCGGAGATCGTCGTCCATATGGGTATCGACACCGTAGCGCTGGAAGGTAAAGGCTTTAAACGTCTGGTGGAAGAGGGTGCGCAGGTAAGCGCAGGGCAACCGATTCTGGAAATGGATCTGGATTACCTGAACGCTAACGCCCGCTCGATGATTAGCCCGGTGGTTTGCAGCAATATCGACGATTTCAGTGGCTTGATCATTAAAGCTCAGGGCCATATTGTGGCGGG‑TCaa                                                                                                                                                                                                       >  1:2572524/1‑289 (MQ=255)
                                                                             cAATCGTGAAAATCTTCAACACCAACCACGCGTTCTGCCTGGAAACCGAAAAAGGCGCGGAGATCGTCGTCCATATGGGTATCGACACCGTAGCGCTGGAAGGTAAAGGCTTTAAACGTCTGGTGGAAGAGGGTGCGCAGGTAAGCGCAGGGCAACCGATTCTGGAAATGGATCTGGATTACCTGAACGCTAACGCCCGCTCGATGATTAGCCCGGTGGTTTGCAGCAATATCGACGATTTCAGTGGCTTGATCATTAAAGCTCAGGGCCATATTGTGGCGGG‑TCAAac                                                                                                                                                                                                     <  1:2716251/289‑1 (MQ=255)
                                                                              aaTCGTGAAAATCTTCAACACCAACCACGCGTTCTGCCTGGAAACCGAAAAAGGCGCGGAGATCGTCGTCCATATGGGTATCGACACCGTAGCGCTGGAAGGTAAAGGCTTTAAACGTCTGGTGGAAGAGGGTGCGCAGGTAAGCGCAGGGCAACCGATTCTGGAAATGGATCTGGATTACCTGAACGCTAACGCCCGCTCGATGATTAGCCCGGTGGTTTGCAGCAATATCGACGATTTCAGTGGCTTGATCATTAAAGCt                                                                                                                                                                                                                                >  1:1314206/1‑262 (MQ=255)
                                                                               aTCGGGAACATCTTAAACACCAACCACGCGTTCTGCCTGGAAACCGAAAAAGGCGCGAAGATCGTCGTCCATATGGGTATCGACACCGTAGCGCTGGAAGGTAAAGGCTTTAAACGTCTGGTGGAAGAGGGTGCGCAGGTAAGCGCAGGGCAACCGATTCTGGAAATGGATCTGGATTACCTGAACGCTAACGCCCGCTCGATGATTAGCCCGGTGGTTTGCAGCAATATCGACGATTTCAGTGGCTTGATCATTAAAGCTCAGGGCCATATTGTGGCGGG‑TCAAacac                                                                                                                                                                                                   <  2:1522258/289‑1 (MQ=255)
                                                                                 cttggaaaTCTTCAACACCAACCACGCGGTCTGCCTTGAAACCGAAAAAGGCGCGGAGATCGTCGTCCATATGGGTATCGACACCGTAGCGCTGGAAGGTAAAGGCTTTAAACTTCTGGTGGAAGAGGGTGCGCAGGTAAGCGCAGGGCAACCGATTCTGGAAATGGATCTGGATTACCTGAACGCTAACGCCCGCTCGATGATTAGCCCGGTGGTTTGCAGCAATATCGACGATTTCAGTGGCTTGATCATTAAAGCTCAGGGCCATATTGTGGCGGG‑TCAAACACCg                                                                                                                                                                                                 <  1:1194214/284‑1 (MQ=255)
                                                                                 cGTGAAAATCTTCAACACCAACCACGCGTTCTGCCTGGAAACCGAAAAAGGCGCGGAGATCGTCGTCCATATGGGTATCGACACCGTAGCGCTGGAAGGTAAAGGCTTTAAACGTCTGGTGGAAGAGGGTGCGCAGGTAAGCGCAGGGCAACCGATTCTGGAAATGGATCTGGATTACCTGAACGCTAACGCCCGCTCGATGATTAGCCCGGTGGTTTGCAGCAATATCGACGATTTCAGTGGCTTGATCATTAAAGCTCAGGGCCATATTGTGGCGGG‑TCAAACACCg                                                                                                                                                                                                 <  2:1369654/289‑1 (MQ=255)
                                                                                 cGTGAAAAGCTTACACACCACCCACGCGTTGTGCCGGGAACCCGAAAAAGGGGCGGAGATCGTCGTCCATATGGGTATCGACACCGTAGCGCTGGAAGGTAAAGGATTTAAACGTCTGGTGGAAGAGGGTGCGAAGGTAAGCGCAGGGCAACCGATTCTGGAAATGGATCTGGATTACCTGAACGCTAACGCCCGCTCGATGATTAGCCCGGTGGTTTGCAGCAATATCGACGATTTCAGTGGCTTGATCATTAAAGCTCAGGGCCATATTGTGGCGGG‑TCAAACACCg                                                                                                                                                                                                 <  2:1867182/289‑1 (MQ=255)
                                                                                             cAACACCAACCACGCGTTCTGCCTGGAAACCGAAAAAGGCGCGGAGATCGTCGTCCATATGGGTATCGACACCGTAGCGCTGGAAGGTAAAGGCTTTAAACGTCTGGTGGAAGAGGGTGCGCAGGTAAGCGCAGGGCAACCGATTCTGGAAATGGATCTGGATTACCTGAACGCTAACGCCCGCTCGATGATTAGCCCGGTGGTTTGCAGCAATATCGACGATTTCAGTGGCTTGATCATTAAAGCTCa                                                                                                                                                                                                                              <  1:2143356/249‑1 (MQ=255)
                                                                                                     accaCGCGTTCTGCCTGGAAACCGAAAAAGGCGCGGAGATCGTCGTCCATATGGGTATCGACACCGTAGCGCTGGAAGGTAAAGGCTTTAAACGTCTGGTGGAAGAGGGTGCGCAGGTAAGCGCAGGGCAACCGATTCTGGAAATGGATCTGGATTACCTGAACGCTAACGCCCGCTCGATGATTAGCCCGGTGGTTTGCAGCAATATCGACGATTTCAGTGGCTTGATCATTAAAGCTCAGGGCCATATTGTGGCGGG‑TTAAACACCGCTGTATGAAATCAAAAAGTa                                                                                                                                                                             >  1:1368999/1‑289 (MQ=255)
                                                                                                               cTGCCTGGAAACCGAAAAAGGCGCGGAGATCGTCGTCCATATGGGTATCGACACCGTAGCGCTGGAAGGTAAAGGCTTTAAACGTCTGGTGGAAGAGGGTGCGCAGGTAAGCGCAGGGCAACCGATTCTGGAAATGGATCTGGATTACCTGAACGCTAACGCCCGCTCGATGATTAGCCCGGTGGTTTgcagca                                                                                                                                                                                                                                                                   >  2:1649400/1‑194 (MQ=255)
                                                                                                               cTGCCTGGAAACCGAAAAAGGCGCGGAGATCGTCGTCCATATGGGTATCGACACCGTAGCGCTGGAAGGTAAAGGCTTTAAACGTCTGGTGGAAGAGGGTGCGCAGGTAAGCGCAGGGCAACCGATTCTGGAAATGGATCTGGATTACCTGAACGCTAACGCCCGCTCGATGATTAGCCCGGTGGTTTGCAGCAATATCGACGATTTCa                                                                                                                                                                                                                                                    <  2:2188441/209‑1 (MQ=255)
                                                                                                               cTGCCTGGAAACCGAAAAAGGCGCGGAGATCGTCGTCCATATGGGTATCGACACCGTAGCGCTGGAAGGTAAAGGCTTTAAACGTCTGGTGGAAGAGGGTGCGCAGGTAAGCGCAGGGCAACCGATTCTGGAAATGGATCTGGATTACCTGAACGCTAACGCCCGCTCGATGATTAGCCCGGTGGTTTGCAGCAATATCGACGATTTCa                                                                                                                                                                                                                                                    >  1:2188441/1‑209 (MQ=255)
                                                                                                                 gCCTGGAAACCGAAAAAGGCGCGGAGATCGTCGTCCATATGGGTATCGACACCGTAGCGCTGGAAGGTAAAGGCTTTAAACGTCTGGTGGAAGAGGGTGCGCAGGTAAGCGCAGGGCAACCGATTCTGGAAATGGATCTGGATTACCTGAACGCTAACGCCCGCTCGATGATTAGCCCGGTGGTTTGCAGCAATATCGACGATTTCa                                                                                                                                                                                                                                                    >  1:1090169/1‑207 (MQ=255)
                                                                                                                  ccTGGAAACCGAAAAAGGCGCGGAGATCGTCGTCCATATGGGTATCGACACCGTAGCGCTGGAAGGTAAAGGCTTTAAACGTCTGGTGGAAGAGGGTGCGCAGGTAAGCGCAGGGCAACCGATTCTGGAAATGGATCTGGATTACCTGAACGCTAACGCCCGCTCGATGATTAGCCCGGTGGTTTGCAGCAATATCGACGATTTCa                                                                                                                                                                                                                                                    <  2:2572002/206‑1 (MQ=255)
                                                                                                                    tGGAAACCGAAAAAGGCGCGGAGATCGTCGTCCATATGGGTATCGACACCGTAGCGCTGGAAGGTAAAGGCTTTAAACGTCTGGTGGAAGAGGGTGCGCAGGTAAGCGCAGGGCAACCGATTCTGGAAATGGATCTGGATTACCTGAACGCTAACGCCCGCTCGATGATTAGCCCGGTGGTTTGCAGCAATATCGACGATTTCAGTGGCTTGATCATTAAAGCTCAggg                                                                                                                                                                                                                           <  1:809822/229‑1 (MQ=255)
                                                                                                                    tGGAAACCGAAAAAGGCGCGGAGATCGTCGTCCATATGGGTATCGACACCGTAGCGCTGGAAGGTAAAGGCTTTAAACGTCTGGTGGAAGAGGGTGCGCAGGTAAGCGCAGGGCAACCGATTCTGGAAATGGATCTGGATTACCTGAACGCTAACGCCCGCTCGATGATTAGCCCGGTGGTTTGCAGCAATATCGACGATTTCAGTGGCTTGATCATTAAAGCTCAggg                                                                                                                                                                                                                           >  2:809822/1‑229 (MQ=255)
                                                                                                                          ccGAAAAAGGCGCGGAGATCGTCGTCCATATGGGTATCGACACCGTAGCGCTGGAAGGTAAAGGCTTTAAACGTCTGGTGGAAGAGGGTGCGCAGGTAAGCGCAGGGCAACCGATTCTGGAAATGGATCTGGATTACCTGAACGCTAACGCCCGCTCGATGATTAGCCCGGTGGTTTGCAGCAATATCGACGATTTCAGTGGCTTGATCATTAAAGCTCAGGGCCATATTGTGGCGGG‑TCAAACACCGCTGTATGAAATCAAAAAGTAATCTGCTTTATGCCTGATGCg                                                                                                                                                        <  1:2662047/289‑1 (MQ=255)
                                                                                                                            gAAAAAGGCGCGGAGATCGTCGTCCATATGGGTATCGACACCGTAGCGCTGGAAGGTAAAGGCTTTAAACGTCTGGTGGAAGAGGGTGCGCAGGTAAGCGCAGGGCAACCGATTCTGGAAATGGATCTGGATTACCTGAACGCTAACGCCCGCTCGATGATTAGCCCGGTGGTTTGCAGCAATATCGACGATTTCAGTGGCTTGATCATTAAAGCTCAGGGCCATATTGTGGCGGG‑TCAAACACCGCTGTATGAAATCAAAAAGTAATCTGCTTTATGCCTGATGCGAc                                                                                                                                                      >  1:609286/1‑289 (MQ=255)
                                                                                                                             aaaaaGGCGCGGAGATCGTCGTCCATATGGGTATCGACACCGTAGCGCTGGAAGGTAAAGGCTTTAAACGTCTGGTGGAAGAGGGTGCGCAGGTAAGCGCAGGGCAACCGATTCTGGAAATGGATCTGGATTACCTGAACGCTAACGCCCGCTCGATGATTAGCCCGGTGGTTTGCAGCAATATCGACGATTTCAGTGGCTTGATCATTAAAGCt                                                                                                                                                                                                                                <  2:2454174/215‑1 (MQ=255)
                                                                                                                                           agcgtcgtCCATATGGGTATCGACACCGTAGCGCTGGAAGGTAAAGGCTTTAAACGTCTGGTGGAAGAGGGTGCGCAGGTAAGCGCAGGGCAACCGATTCTGGAAATGGATCTGGATTACCTGAACGCTAACGCCCGCTCGATGATTAGCCCGGTGGTTTGCAGCAATATCGACGATTTCAGTGGCTTGATCATTAAAGCTCAGGGCCATATTGTGGCGGG‑TCAAACACCGCTGTATGAAATCAAAAAGTAATCTGCTTTATGCCTGATGCGACGCTTGAGCGTCGCa                                                                                                                                        <  2:675077/286‑1 (MQ=255)
                                                                                                                                             cgtcgtCCATATGGGTATCGACACCGTAGCGCTGGAAGGTAAAGGCTTTAAACGTCTGGTGGAAGAGGGTGCGCAGGTAAGCGCAGGGCAACCGATTCTGGAAATGGATCTGGATTACCTGAACGCTAACGCCCGCTCGATGATTAGCCCGGTGGTTTGCAGCAATATCGACGATTTCAGTGGCTTGATCATTAAAGCTCAGGGCCATATTGTGGCGGG‑TCTAACAACGCCGTATTGAAACAAAAACGAATCCTCTTTTTTCCCTATGCGGCGCCTGAGccgtccaccc                                                                                                                                     >  2:2243833/1‑280 (MQ=255)
                                                                                                                                              gtcgtcCATATGGGTATCGACACCGTAGCGCTGGAAGGTAAAGGCTTTAAACGTCTGGTGGAAGAGGGTGCGCAGGTAAGCGCAGGGCAACCGATTCTGGAAATGGATCTGGATTACCTGAACGCTAACGCCCGCTCGATGATTAGCCCGGTGGTTTGCAGCAATATCGACGATTTCAGTGGCTTGATCATTAAAGCTCAGGGCCATATTGTGGCGGG‑TCAAACACCGCTGTATGAAATCAAAAAGTAATCTGCTTTATGCCTGATGCGACGCTTGAGCGTCGCATCca                                                                                                                                    <  2:609286/289‑1 (MQ=255)
                                                                                                                                                       atGGGTATCGACACCGTAGCGCTGGAAGGTAAAGGCTTTAAACGTCTGGTGGAAGAGGGTGCGCAGGTAAGCGCAGGGCAACCGATTCTGGAAATGGATCTGGATTACCTGAACGCTAACGCCCGCTCGATGATTAGCCCGGTGGTTTGCAGCAATATCGACGATTTCAGTGGCtt                                                                                                                                                                                                                                             >  2:2259314/1‑176 (MQ=255)
                                                                                                                                                       atGGGTATCGACACCGTAGCGCTGGAAGGTAAAGGCTTTAAACGTCTGGTGGAAGAGGGTGCGCAGGTAAGCGCAGGGCAACCGATTCTGGAAATGGATCTGGATTACCTGAACGCTAACGCCCGCTCGATGATTAGCCCGGTGGTTTGCAGCAATATCGACGATTTCAGTGGCtt                                                                                                                                                                                                                                             <  1:2259314/176‑1 (MQ=255)
                                                                                                                                                          ggTATCGACACCGTAGCGCTGGAAGGTAAAGGCTTTAAACGTCTGGTGGAAGAGGGTGCGCAGGTAAGCGCAGGGCAACCGATTCTGGAAATGGATCTGGATTACCTGAACGCTAACGCCCGCTCGATGATTAGCCCGGTGGTTTGCAGCAATATCGACGATTTCAGTGGCTTGATCATTAAAGCTCAGGGCCATATTGTGGCGGG‑TCAAACACCGCTGTATGAAATCAAAAAGTAATCTGCTTTATGCCTGATGCGACGCTTGAGCGTCGCATCCAAC‑AATGACAAg                                                                                                                        <  1:1833257/288‑1 (MQ=255)
                                                                                                                                                             aTCGACACCGTAGCGCTGGAAGGTAAAGGCTTTAAACGTCTGGTGGAAGAGGGTGCGCAGGTAAGCGCAGGGCAACCGATTCTGGAAATGGATCTGGATTACCTGAACGCTAACGCCCGCTCGATGATTAGCCCGGTGGTTTGCAGCAATATCGACGATTTCAGTGGCTTGATCATTAAAGCTCAGGGCCATATTGTGGCGGG‑TCAAACACCGCTGTATGAAATCAAAAAGTAATCTGTTTTATGCCTGATGCGACGCTTGAGCGTCGCATCCAAC‑AATGACAAGCgg                                                                                                                     <  1:196468/288‑1 (MQ=255)
                                                                                                                                                              tCGACACCGTAGCGCTGGAAGGTAAAGGCTTTAAACGTCTGGTGGAAGAGGGTGCGCAGGTAAGCGCAGGGCAACCGATTCTGGAAATGGATCTGGATTACCTGAACGCTAACGCCCGCTCGATGATTAGCCCGGTGGTTTGCAGCAATATCGACGATTTCAGTGGCTTg                                                                                                                                                                                                                                            >  2:1142153/1‑170 (MQ=255)
                                                                                                                                                                     cGTAGCGCTGGAAGGTAAAGGCTTTAAACGTCTGGTGGAAGAGGGTGCGCAGGTAAGCGCAGGGCAACCGATTCTGGAAATGGATCTGGATTACCTGAACGCTAACGCCCGCTCGATGATTAGCCCGGTGGTTTGCAGCAATATCGACGATTTCAGTGGCTTGATCATTAAAGCTCAGGGCCATATTGTGGCGGG‑Tc                                                                                                                                                                                                         <  1:1214581/197‑1 (MQ=255)
                                                                                                                                                                     cGTAGCGCTGGAAGGTAAAGGCTTTAAACGTCTGGTGGAAGAGGGTGCGCAGGTAAGCGCAGGGCAACCGATTCTGGAAATGGATCTGGATTACCTGAACGCTAACGCCCGCTCGATGATTAGCCCGGTGGTTTGCAGCAATATCGACGATTTCAGTGGCTTGATCATTAAAGCTCAGGGCCATATTGTGGCGGG‑Tc                                                                                                                                                                                                         >  2:1214581/1‑197 (MQ=255)
                                                                                                                                                                               gAAGGTAAAGGCTTTAAACGTCTGGTGGAAGAGGGTGCGCAGGTAAGCGCAGGGCAACCGATTCTGGAAATGGATCTGGATTACCTGAACGCTAACGCCCGCTCGATGATTAGCCCGGTGGTTTGCAGCAATATCGACGATTTCAGTGGCTTGATCATTAAAGCTCAGGGCCATATTGTGGCGGG‑TCAAaca                                                                                                                                                                                                    >  1:274469/1‑192 (MQ=255)
                                                                                                                                                                               gAAGGTAAAGGCTTTAAACGTCTGGTGGAAGAGGGTGCGCAGGTAAGCGCAGGGCAACCGATTCTGGAAATGGATCTGGATTACCTGAACGCTAACGCCCGCTCGATGATTAGCCCGGTGGTTTGCAGCAATATCGACGATTTCAGTGGCTTGATCATTAAAGCTCAGGGCCATATTGTGGCGGG‑TCAAACACCGCTGTATGAAATCAAAAAGTAATc                                                                                                                                                                          >  1:1063683/1‑218 (MQ=255)
                                                                                                                                                                               gAAGGTAAAGGCTTTAAACGTCTGGTGGAAGAGGGTGCGCAGGTAAGCGCAGGGCAACCGATTCTGGAAATGGATCTGGATTACCTGAACGCTAACGCCCGCTCGATGATTAGCCCGGTGGTTTGCAGCAATATCGACGATTTCAGTGGCTTGATCATTAAAGCTCAGGGCCATATTGTGGCGGG‑TCAAACACCGCTGTATGAAATCAAAAAGTAATc                                                                                                                                                                          <  2:1063683/218‑1 (MQ=255)
                                                                                                                                                                                           tttAAACGTCTGGTGGAAGAGGGTGCGCAGGTAAGCGCAGGGCAACCGATTCTGGAAATGGATCTGGATTACCTGAACGCTAACGCCCGCTCGATGATTAGCCCGGTGGTTTGCAGCAATATCGACGATTTCAGTGGCTTGATCATTAAAGCTCAGGGCCATATTGTGGCGGG‑TCAAACACCGCTGTATGAAATCAAAAAGTAATCTGCTTTATGCCTGATGCGACGCTTGAGCGTCGCATCCAAC‑AATGACAAGCGGTGGAGATCTTCTCTG‑CCGC‑TTTTTTTTtcat                                                                                    <  1:2443775/289‑1 (MQ=255)
                                                                                                                                                                                            ttAAACGTCTGGTGGAAGAGGGTGCGCAGGTAAGCGCAGGGCAACCGATTCTGGAAATGGATCTGGATTACCTGAACGCTAACGCCCGCTCGATGATTAGCCCGGTGGTTTGCAGCAATATCGACGATTTCAGTGGCTTGATCATTAAAGCTCAGGGCCATATTGTGGCGGG‑TCAAACACCGCTGTATGAAATCAAAAAGTAATCTGCTTTATGCCTGATGCGACGCTTGAGCGTCGCATCCAAC‑AATGACAAGCGGTGGGGGTCTTTTCTG‑CCGC‑TTTTTTTTtcttt                                                                                   >  1:416693/1‑286 (MQ=255)
                                                                                                                                                                                             tAAACGTCTGGTGGAAGAGGGTGCGCAGGTAAGCGCAGGGCAACCGATTCTGGAAATGGATCTGGATTACCTGAACGCTAACGCCCGCTCGATGATTAGCCCGGTGGTTTGCAGCAATATCGACGATTTCAGTGGCTTGATCATTAAAGCTCAGGGCCATATTGTGGCggg                                                                                                                                                                                                            >  2:251798/1‑171 (MQ=255)
                                                                                                                                                                                              aaaCGTCTGGTGGAAGAGGGTGCGCAGGTAAGCGCAGGGCAACCGATTCTGGAAATGGATCTGGATTACCTGAACGCTAACGCCCGCTCGATGATTAGCCCGGTGGTTTGCAGCAATATCGACGATTTCAGTGGCTTGATCATTAAAGCTCAGGGCCATATTGTGGCGGG‑GCAAACACCGCTGTATGAAATCAAAAAGTAATCTGCTTTATGCCTGATGCGACGCTTGAGCGTCCCATCCAAC‑AATGACAAACGGGGGAGAACTTTCCTG‑CCGC‑CTTTTTTTtcataca                                                                                 >  1:1773536/1‑286 (MQ=255)
                                                                                                                                                                                                aCGTCTGGTGGAAGAGGGTGCGCAGGTAAGCGCAGGGCAACCGATTCTGGAAATGGATCTGGATTACCTGAACGCTAACGCCCGCTCGATGATTAGCCCGGTGGTTTGCAGCAATATCGACGATTTCAGTGGCTTGATCATTAAAGCTCAGGGCCATATTGTGGCGGG‑TCAAACACCGCTGTATGAAATCAAAAAGTAATCTGCTTTATGCCTGATGCGACGCTTGGGCGTCGCATCCAAC‑AATGACAAGCGGTGGAGATCTTCTCTG‑CCGCTTTTTTTTTTCatcaat                                                                                <  1:2612391/289‑1 (MQ=255)
                                                                                                                                                                                                  gTCTGGTGGAAGAGGGTGCGCAGGTAAGCGCAGGGCAACCGATTCTGGAAATGGATCTGGATTACCTGAACGCTAACGCCCGCTCGATGATTAGCCCGGTGGTTTGCAGCAATATCGACGATTTCAGTGGCTTGATCATTAAAGCTCAGGGCCATATTGTGGCGGG‑TCAAACACCGCTGTATGAAATCAAAAAGTAATCTGCTTTATGCCTGATGCGACGCTTGAGCGTCGCATCCAAC‑AATGACAAGCGGTGGAGATCTTCTCTG‑CCGC‑TTTTTTTTtcatca                                                                                  <  1:942993/284‑1 (MQ=255)
                                                                                                                                                                                                   tgagggggaggaGGGTGGGGAGGTAGGGGGAGGGCGACGGGTGCGGGGAAGGGGGCTGGATTACCTGAACGCTAGCGCCGGGTGGATGATGAGCCGGGTGGTGTGCAGCAATATCGTAGGTGTCAGTGGCTTGATGATTAAGGCGCAGGGGAAGATGGTGGCGGG‑TCAAACACCGCTGTAGGAAATCAAAAAGTAAGCTGCGTTATGCGTGATGCGACGCTGGAGCGTCGCATCCAAC‑AAGGACAAGCGGTGGAGATCTTCTCTG‑CCGC‑TTTTTTTTTCATCAatcat                                                                             <  2:2708576/282‑1 (MQ=255)
                                                                                                                                                                                                       gtggAAGAGGGTGCGCAGGTAAGCGCAGGGCAACCGATTCTGGAAATGGATCTGGATTACCTGAACGCTAACGCCCGCTCGATGATTAGCCCGGTGGTTTGCAGCAATATCGACGATTTCAGTGGCTTGATCATTAAAGCTCAGGGCCATATTGTGGCGGG‑TCAAACACCGCTGTATGAAATCAAAAAGTAATCTGCTTTTTGCCTGATGCGACGCTTGAGCGTCGCATCCAAC‑AAATACAAGAGGTGGAGATCTTCTCTG‑CCGC‑TTTTTTTTTTatcaaactacccc                                                                         >  2:236439/1‑280 (MQ=255)
                                                                                                                                                                                                          gAAGAGGGTGCGCAGGTAAGCGCAGGGCAACCGATTCTGGAAATGGATCTGGATTACCTGAACGCTAACGCCCGCTCGATGATTAGCCCGGTGGTTTGCAGCAATATCGACGATTTCAGTGGCTTGATCATTAAAGCTCAGGGCCATATTGTGGCGGG‑TCAAACACCGCTGTATGAAATCAAAAAGTAATCTGCTTTATGCCTGATGCGACGCTTGAGCGTCGCATCCAAC‑AATGACAAGCGGTGGAGATCTTCTCTG‑CCGC‑TTTTTTTTTCATCAATCATCCCCATa                                                                      <  1:1947879/288‑1 (MQ=255)
                                                                                                                                                                                                            agggggTGGGCAGGTAAGCGCAGGGCAACCGATTCTGGAAATGGATCTGGATTACCTGAACGCTAACGCCCGCTCGATGATTAGCCCGGTGGTTTGCAGCAATATCGACGATTTCAGTGGCTTGATCATTAAAGCTCAGGGCCATATTGTGGCGGG‑TCAAACACCGCTGTATGAAATCAAAAAGTAATCTGCTTTATGCCTGATGCGACGCTTGAGCGTCGCATCCAAC‑AATGACAAGCGGTGGAGATCTTCTCTG‑CCGC‑TTTTTTTTTCATCAATCATCCCCATAAt                                                                    <  1:2096468/285‑1 (MQ=255)
                                                                                                                                                                                                            agagGGTGCGCAGGTAAGCGCAGGGCAACCGATTCTGGAAATGGATCTGGATTACCTGAACGCTAACGCCCGCTCGATGATTAGCCCGGTGGTTTGCAGCAATATCGACGATTTCAGTGGCTTGATCATTAAAGCTCAGGGCCATATTGTGGCGGG‑TCAAACACCGCTGTATGAAATCAAAAAGTAATCTGCTTTATGCCTGATGCGACGCTTGAGCGTCGCATCCAAC‑AATGACAAGCGGTGGAGATCTTCTCTG‑CCGC‑TTTTTTTTTCATCAATCATCCCCATAATc                                                                   <  1:58410/289‑1 (MQ=255)
                                                                                                                                                                                                            acggggtgggtAGGTACGCACGCGGCAATCGATTATCGAGAGTGATCTGGAGTACCTTGACGCTAAGGCCCGTTGGTGGATTAGCCCAGTGGTTTGGAGCAATATGGACGAGTTTAGGGGCTTGATCATTAAAGATCAGGGCCATATTGTGGCGGG‑GCAAACACCGCTGTATGAAATGAAAAAGGAATCTGCTTTATGCCGGATGCGACGCTTGAGCGTCTCATCCAAC‑AATGACAAGAGGTGGAGATCTTCTCTG‑CCGC‑TTTTTTTTTCATCAATCATCCCCATAAt                                                                    <  2:1750106/285‑1 (MQ=255)
                                                                                                                                                                                                                 gTGCGCAGGTAAGCGCAGGGCGACCGATTCTGGAAATGGATCTGGATTACCTGAACGCTAACGCCCGCTCGATGATTAGCCCGGTGGTTTGCAGCAATATCGACGATTTCAGTGGCTTGATCATTAAAGCTCAGGGCCATATTGTGGCGGG‑TCCAACACCGCTGTATGAAATCCAAAAGGAATCTGCTTTATGCCTTATGCGACGCTTTAGCGGCGCCACCAAC‑AAAGACAAACGGGGGAGATCCTCTCTC‑CCCC‑CTTTTTTTTTCTCAaacatcgtttcttcacaca                                                               >  2:2138375/1‑275 (MQ=255)
                                                                                                                                                                                                                  tGCGCAGGTAAGCGCAGGGCAACCGATTCTGGAAATGGATCTGGATTACCTGAACGCTAACGCCCGCTCGATGATTAGCCCGGTGGTTTGCAGCAATATCGACGATTTCAGTGGCTTGATCATTAAAGCTCAGGGCCATATTGTGGCGGGCACAAAC‑CCGCTGTATTGAAACAAAAAGTAATCTGCGTTCTGCCTGATGCGACGCCTGATCGTCGACTTCAACAAATCACAGACGG‑GTGGAGCTTCTCTG‑CCGC‑TTTTTTTTTTCTCAATCCACGCCCTCATCCttt                                                               >  2:482399/1‑286 (MQ=255)
                                                                                                                                                                                                                  tGCGCAGGTAAGCGCAGGGCAACCGATTCTGGAAATGGATCTGGATTACCTGAACGCTAACGCCCGCTCGATGATTAGCCCGGTGGTTTGCAGCAATATCGACGATTTCAGTGGCTTGATCATTAAAGCTCAGGGCCATATTGTGGCGGG‑TCAAAAACCGCTGTATGAAATCAAAAAGTAATCTGCTTTATTCCTTATTCCACCCTTGAGAGTCGCACCCCAC‑AATGACAAACGGTGGTGGTATTCTCTG‑CCGC‑TTTTTTTTTTATCAATCACcccccatatccatttt                                                             >  2:1558771/1‑277 (MQ=255)
                                                                                                                                                                                                                   gcgcAGGTAAGCGCAGGGCAACCGATTCTGGAAATGGATCTGGATTACCTGAACGCTAACGCCCGCTCGATGATTAGCCCGGTGGTTTGCAGCAATATCGACGATTTCAGTGGCTTGATCATTAAAGCTCAGGGCCATATTGTGGCGGG‑TCAAACAACGCTTTATGAAATCAAAAAGTAATCTGCTTTTTGCCTGATGCGACGCCTGACCGTCGCATCCAAC‑CATGACAAACGGTGGATATCTTCTCTG‑CCGC‑TTTTTTTTTCATCACTTATtccctctatccgttttt                                                            >  2:1893910/1‑276 (MQ=255)
                                                                                                                                                                                                                         gTAAGCGCAGGGCAACCGATTCTGGAAATGGATCTGGATTACCTGAACGCTAACGCCCGCTCGATGATTAGCCCGGTGGTTTGCAGCAATATCGACGATTTCAGTGGCTTGAt                                                                                                                                                                                                                                          <  2:1393181/113‑1 (MQ=255)
                                                                                                                                                                                                                         gTAAGCGCAGGGCAACCGATTCTGGAAATGGATCTGGATTACCTGAACGCTAACGCCCGCTCGATGATTAGCCCGGTGGTTTGCAGCAATATCGACGATTTCAGTGGCTTGATCATTAAAGCTCAGGGCCATATTGTGGCGGG‑TCAAACACCGCTGTATGAAATCAAAAAGTAATCTGCTTTATGCCTGATGCGa                                                                                                                                                       <  1:730953/195‑1 (MQ=255)
                                                                                                                                                                                                                                   ggCAACCGATTCTGGAAATGGATCTGGATTACCTGAACGCTAACGCCCGCTCGATGATTAGCCCggtg                                                                                                                                                                                                                                                                             <  2:1306318/68‑1 (MQ=255)
                                                                                                                                                                                                                                   ggCAACCGATTCTGGAAATGGATCTGGATTACCTGAACGCTAACGCCCGCTCGATGATTAGCCCGGTGGTTTGCAGCAATATCGACGATTTCAGTGGCTTGATCATTAAAGCTCAGGGCCATATTGTGGCGGG‑TCAAACACCGCTGTATGAAATCAAAAAGTAATCTGCTTTATGCCTGATGCGACGCTTGAGCGTCGCATCCAAC‑AATGACAAGCGGTGGAGATCTTCTCTG‑CCGC‑TTTTTTTTTCATCAATCATCCCCATAATCCTTGTTAGATTATCAATTTTaaa                                            >  1:248044/1‑289 (MQ=255)
                                                                                                                                                                                                                                        ccGATTCTGGAAATGGATCTGGATTACCTGAACGCTAACGCCCGCTCGATGATTAGCCCGGTGGTTTGCAGCAATATCGACGATTTCAGTGGCTTGATCATTAAAGCTCAGGGCCATATTGTGGCGGG‑TCAAacac                                                                                                                                                                                                   >  2:1092530/1‑136 (MQ=255)
                                                                                                                                                                                                                                          gATTCTGGAAATGGATCTGGATTACCTGAACGCTAACGCCCGCTCGATGATTAGCCCGGTGGTTTGCAGCAATATCGACGATTTCAGTGGCTTGA‑CATTAAAGCTCAGGGCCATATTGTGGCGGG‑TCAAACACCGCTGTATGAAATCAAAAAGTAATCTGCTTTATGCCTGATGCGACGCTTGAGCGTCGCATCCAAC‑AATGACAAGCGGTGGAGATCTTCTCTG‑CCGC‑TTTTTTTTTCATCAATCATCCCCATAATCCTTGTTAGATTATCAATTTTAAAAAACTAAc                                    <  1:16069/289‑1 (MQ=255)
                                                                                                                                                                                                                                             tCTGGAAATGGATCTGGATTACCTGAACGCTAACGCCCGCTCGATGATTAGCCCGGTGGTTTGCAGCAATATCGACGATTTCAGTGGCTTGATCATTAAAGCTCAGGGCCATATTGTGGCGGG‑GCAAACACCGCTGTATGAAATCAAAAAGTAATCTGCTTTATGCCTGATGCGACGCTTGAGCGTCGCATCCAAC‑AATGACAAACGGTGGAGATCTTCTCTG‑CCGC‑TTTTTTTTTCATCAATCATCCCCATAATCCTTGGTAGATTATCAATTTTAAAAAACTAACAg                                  >  1:1114583/1‑289 (MQ=255)
                                                                                                                                                                                                                                               tGGAAATGGATCTGGATTACCTGAACGCTAACGCCCGCTCGATGATTAGCCCGGTGGTTTGCAGCAATATCGACGATTTCAGTGGCTTGATCATTAAAGCTCAGGGCCATATTGTGGCGGG‑TCAAACACCGCTGTATGAAATCAAAAAGTAATCTGCTTTATGCCTTATGCGACGCCTGAGCGTCGCATCCAAC‑AACAGCAAGCGGTGGGAGTCTTCTCTGCCCCC‑TTTTTTTTTCATAAACAATCCCATAAATCTTTTTTAG‑TTTTCCATTTTTAAAAACTaaaaagt                                >  2:925613/1‑284 (MQ=255)
                                                                                                                                                                                                                                                ggAAATGGATCTGGATTACCTGAACGCTAACGCCCGCTCGATGATTAGCCCGGTGGTTTGCAGCAATATCGACGATTTCAGTGGCTTGATCATTAAAGCTCAGGGCCATATTGTGGCGGG‑TCAAACACCGCTGTATGAAATCAAAAAGTAATCTGCTTTATGCCTGATGCGACGCTTGAGCGTCGCATCCAAC‑AATGACAAGCGGTGGAGATCTTCTCTG‑CCGC‑TTTTTTTTTCATCAATCATCCCCATAATCCTTGTTAGATTATCAATTTTAAAAAACTAACAGTTg                               <  1:2293668/289‑1 (MQ=255)
                                                                                                                                                                                                                                                 gAAATGGATCTGGATTACCTGAACGCTAACGCCCGCTCGATGATTAGCCCGGTGGTTTGCAGCAATATCGACGATTTCAGTGGCTTGATCATTAAAGCTCAGGGCCATATTGTGGCGGG‑TCAAACACCGCTGTATGAAATCAAAAAGTAATCTGCTTTATGCCTGATGCGACGCTTGAGCGTCGCATCCAAC‑AATGACAAGCGGTGGAGATCTTCTCTG‑CCGC‑TTTTTTTTTCATCAATCATcccc                                                                         <  1:1694359/246‑1 (MQ=255)
                                                                                                                                                                                                                                                       gATCTGGATTACCTGAACGCTAACGCCCGCTCGATGATTAGCCCGGTGGTTTGCAGCAATATCGACGATTTCAGTGGCTTGATCATTAAAGCTCAGGGCCATATTGTGGCGGG‑TCAAACACCGCTGTATGAAATCAAAAAGTAATCTGCTTTATGCCTGATGCGACGCTTGAGCGTCGCATCCAAC‑AATGACAAGCGGTGGAGATCTTCTCTG‑CCGC‑TTTTTTTTTCatcaa                                                                                 <  1:2004385/232‑1 (MQ=255)
                                                                                                                                                                                                                                                          cTGGATTACCTGAACGCTAACGCCCGCTCGATGATTAGCCCGGTGGTTTGCAGCAATATCGACGATTTCAGTGGCTTGATCATTAAAGCTCAGGGCCATATTGTGGCGGG‑TCAAACACCGCTGTATGAAATCAAAAAGTAATCTGCTTTATGCCTGATGCGACGCTTGAGCGTCGCATCCAAC‑AATGACAAGCGGTGGAGATCTTCTCTG‑CCGC‑TTTTTTTTTCATCAATCATCCCCATAATCCTTGTTAGATTATCAATTTTAAAAAACTAACAGTTGTCAGCCTGTc                     <  1:2390619/289‑1 (MQ=255)
                                                                                                                                                                                                                                                           tGGATTACCTGAACGCTAACGCCCGCTCGATGATTAGCCCGGTGGTTTGCAGCAATATCGACGATTTCAGTGGCTTGATCATTAAAGCTCAGGGCCATATTGTGGCGGG‑TCAAACACCGCTGTATGAAATCAAAAAGTAATCTGCTTTATGCCTGATGCGACGCTTGAGCGTCGCATCCAAC‑AATGACAAGCGGTGGAGATCTTCTCTG‑CCGC‑TTTTTTTTTCATCAATCATCCCCATAATCCTTGTTAGATTATCAATTTTAAAAAACTAACAGTTGTCAGCCTGTcc                    <  2:2076646/289‑1 (MQ=255)
                                                                                                                                                                                                                                                            ggATTACCTGAACGCTAACGCCCGCTCGATGATTAGCCCGGTGGTTTGCAGCAATATCGACGATTTCAGTGGCTTGATCATTAAAGCTCAGGGCCATATTGTGGCGGG‑TCAAACACCGCTGTATGAAATCAAAAAGTAATCTGCTTTATGCCTGATGCGACGCTTGAGCGTCGCATCCAAC‑AATGACAAGCGGTGGAGATCTTCTCTG‑CCGC‑TTTTTTTTTCATCAATCATCCCCATAATCCTTGTTAGATTATCAATTTTAAAAAACTAACAGTTGTCAGCCTGTccc                   <  2:122234/289‑1 (MQ=255)
                                                                                                                                                                                                                                                              aTTACCTGAACGCTAACGCCCGCTCGATGATTAGCCCGGTGGTTTGCAGCAATATCGACGATTTCAGTGGCTTGATCATTAAAGCTCAGGGCCATATTGTGGCGGG‑TCAAACACCGCTGTATGAAATCAAAAAGTAATCTGCTTTATGCCTGATGCGACGCTTGAGCGTCGCATCCAAC‑AATGACAAGCGGTGGAGATCTTCTCTG‑CCGC‑TTTTTTTTTCATCAATCATCCCCATAATCCTTGTTAGATTATCAATTTTAAAAAACTAACAGTTGTCAGCCTGTCCCg                  <  1:870463/288‑1 (MQ=255)
                                                                                                                                                                                                                                                                 aCCTGAACGCTAACGCCCGCTCGATGATTAGCCCGGTGGTTTGCAGCAATATCGACGATTTCAGTGGCTTGATCATTAAAGCTCAGGGCCATATTGTGGCGGG‑TCAAACACCGCTGTATGAAATCAAAAAGTAAACTGCTTTATGCCTGATGCGACGCTTGAGCGTCGCATCCAAC‑AATGACAAGCGGTGGAGATCTTCTCTG‑CCGC‑TTTTTTTTTCATCAATCATCCCCCTAATCCTTGTTAGATTATCAATTTTAAAAAAATAAAAGTTGTCAGCCTGTCCCGCTta              >  1:817245/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                  ccTGAACGCTAACGCCCGCTCGATGATTAGCCCGGTGGTTTGCAGCAATATc                                                                                                                                                                                                                                                              <  2:535525/52‑1 (MQ=255)
                                                                                                                                                                                                                                                                  ccTGAACGCTAACGCCCGCTCGATGATTAGCCCGGTGGTTTGCAGCAATATc                                                                                                                                                                                                                                                              >  1:535525/1‑52 (MQ=255)
                                                                                                                                                                                                                                                                   cTGAACGCTAACGCCCGGTCGATGATTAGCCCGGTGGTTTGCAGCAATATCGACGATTTCAGTGGCTTGAGCATTAAAGCTCAGGGCCATATTGTGGCGGG‑TCAAACACCGCTGTATGCAATCAAAAAGTAATCTGCTTTATGCCTGATGCGACGCTTGAGCGTCGCATCCAAC‑AATGACAAGCGGTGGAGATCTTCTCTG‑CCGC‑TTTTTTTTTCATCAATCATCCCCATAATCCTTGTTAGATTATCAATTTTAAAAAACTAACAGTTGTCAGCCTGTCCCGCTtata            <  2:1024801/289‑1 (MQ=255)
                                                                                                                                                                                                                                                                   cTGAACGCTAACGCCCGCTGGATGATTAGCCCGGTGGTTTGCAGCAATATCGACGATTTCAGTGGGTTGATCATTAAAGCTCAGGGCCATATTGTGGCGGG‑TCAAACACCGCTGTATGAAATCAAAAAGTAATCTGCTTTATGCCTGATGCGACGCTTGAGCGTCGCATCCAAC‑AATGTCAAGCGGTGGAGATCTTCTCTG‑CCGC‑TTTTTTTTTCATCAATCATCCCCATAATCCTTGTTAGATTATCAATTTTAAAAAACTAACAGTTGTCAGCCTGTCCCGCTtata            <  1:1224223/289‑1 (MQ=255)
                                                                                                                                                                                                                                                                       aCGCTAACGCCCGCTCGATGATTAGCCCGGTGGTTTGCAGCAATATCGACGATTTCAGTGGCTTGATCATTAAAGCTCAGGGCCATATTGTGGCGGG‑TCAAACACCGCTGTATGAAATCAAAAAGTAATCTGCTTTATGCCTTATGCGACGCTTGAGCGTCGCATCCAAC‑AATGACAAGCGGTGGAGATCTTCTCTG‑CCGC‑TTTTTTTTTCATCAATCATCCCCATAATCCTTGTTTGATTATTAATTTTAAAAAACTAACAGTTGTCAGCCTGTCCCCCTTTTTAGAt        >  1:471854/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                           tAACGCCCGCTCGATGATTAGCCCGGTGGTTTGCAGCAATATCGACGATTTCAGTGGCTTGATCATTAAAGCTCAGGGCCATATTGTGGCGGG‑TCAAACACCGCTGTATGAAATCAAAAAGTAATCTGCTTTATGCCTGATGCGACGCTTGAGCGTCGCATCCAAC‑AATGACAAGCGGTGGAGATCTTCTCTG‑CCGC‑TTTTTTTTTCATCAATCATCCCCATAATCCTTGTTAGATTATCAATTTTAAAAAACTAACAGTTGTCAGCCTGTCCCGCTTATAAGATCATa    <  1:1538461/289‑1 (MQ=255)
                                                                                                                                                                                                                                                                           tAACGCCCGCTAGATGATTAGCCCGGTGGTTTGCAGCAATATCGACGATTTCAGTGGCTTGATCATTAAAGCTCAGGGCCATATTGTGGCGGG‑TCAAACACCGCTGTATGAAATCAAAAAGTAATCTGCTTTATGCCTGATGCGACGCTTGAGCGTCGCATCCAAC‑AATGACAAGCGGTGGAGATCTTCTCTG‑CCGC‑TTTTTTTTTCATCAATCATCCCCATAATCCTTGTTAGATTATCAATTTTAAAAAACTAACAGTTGTCAGCCTGTCCCGCTTATAAGATCATa    <  1:1151070/289‑1 (MQ=255)
                                                                                                                                                                                                                                                                                     |||                                                                                                                                                                                                                                                                                          
ATTCGCCAGCAAAGCGGTGGGTGACGGTGTGGCGGTGAAACCGACAGATAAAATCGTCGTAAGTCCAGCCGCAGGGACAATCGTGAAAATCTTCAACACCAACCACGCGTTCTGCCTGGAAACCGAAAAAGGCGCGGAGATCGTCGTCCATATGGGTATCGACACCGTAGCGCTGGAAGGTAAAGGCTTTAAACGTCTGGTGGAAGAGGGTGCGCAGGTAAGCGCAGGGCAACCGATTCTGGAAATGGATCTGGATTACCTGAACGCTAACGCCCGCAGCATGATTAGCCCGGTGGTTTGCAGCAATATCGACGATTTCAGTGGCTTGATCATTAAAGCTCAGGGCCATATTGTGGCGGG‑TCAAACACCGCTGTATGAAATCAAAAAGTAATCTGCTTTATGCCTGATGCGACGCTTGAGCGTCGCATCCAAC‑AATGACAAGCGGTGGAGATCTTCTCTG‑CCGC‑TTTTTTTTTCATCAATCATCCCCATAATCCTTGTTAGATTATCAATTTTAAAAAACTAACAGTTGTCAGCCTGTCCCGCTTATAAGATCATACG  >  CP042583/577932‑578489

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A