Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A6 F210 I1 R1 4928 340.1 5480506 96.9% 5310610 252.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA CP042583 1,497,792 3 bp→TCG intergenic (–/–) – / – –/–

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0425831,497,7920AT98.7% 870.2 / NA 371intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base A (0/1);  major base T (180/185);  minor base G (3/2);  total (183/188)
Fisher's exact test for biased strand distribution p-value = 6.82e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*CP0425831,497,7930GC100.0% 882.1 / NA 371intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base C (183/188);  total (183/188)
*CP0425831,497,7940CG99.7% 881.9 / NA 371intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base C (1/0);  new base G (182/187);  total (183/188)
Fisher's exact test for biased strand distribution p-value = 4.95e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01

Only 100 of 371 total aligned reads displayed.

CTGACTGACGACCAGCTGAATATCACCCCACCTCCGGACGTCAACGGTCTGAAAAAGGATCCATCCTTAAGTTTGTACGCCATTCCTGACGGTGATGTGAAAGGTCGCGTGGTAGCGATTTTACTTAATGATGAAGTGAGAAGC‑GCAGACCTTCTGGCCATTCTCAAGGCG‑CTGAAGGCCAAAGGCGTTCATGCCAAACTGCTCTACTCCCGAATGGGTGAAGTGACTGCGGATGACGGTACGGTGTTGCCTATAGCCGCTACCTTTGCCGGTGCACCTAGCCTGACGGTCGATGCGGTCATTGTCCCTTGCGGCAATATCGCGGATATCGCTGACAACGGCGATGCCAACTACTACCTGATGGAAGCCTACAAACACCTTAAACCGATTGCGCTGGCGGGTGACGCGCGCAAGTTTAAAGCAACAATCAAGATCGCTGACCAGGGTGAAGAAGGGATTGTGGAAGCTGACAGCGCTGACGGTAGTTTTATGGATGAACTGCTAACGCTGATGGCAGCACACCGCGTGTGGAGTCGCATTCCTAAGATTGACAAAATTCC  >  CP042583/1497513‑1498072
                                                                                                                                                                                                                                                                                         |||                                                                                                                                                                                                                                                                                      
 tgactgacGACCAGCTGAATATCACCCCACCTCCGGACGTCAACGGTCTGAAAAAGGATCCATCCTTAAGTTTGTACGCCATTCCTGACGGTGATGTGAAAGGTCGCGTGGTAGCGATTTTACTTAATGATGAAGTGAGATCG‑GCAGACCTTCTGGCCATTCTCAAGGCG‑CTGAAGGCCAAAGGCGTTCATGCCAAACTGCTCTACTCCCGAATGGGTGAAGTGACTGCGGATGACGGTACGGTGTTGCCTATAGCCGCTACCTTTGCCGGTGCACCTTCGCTGACGGt                                                                                                                                                                                                                                                                                <  1:2418288/289‑1 (MQ=255)
 tgacggacGACCAACTGACTATCCCCCCACCTCCGGACGTCAGCGGTCTGAAAAAGGATCCATCCTTAAGTTTGTACGCCATTCCTGACGGTGATGTGAAAGGTCGCGTGGTAGCGATTTTACTTAATGATGAAGTGAGATCG‑GCAGACCTTCTGGCCATTCTCAAGGCG‑CTGAAGGCCAAAGGCGTTCATGCCAAACTGCTCTACTCCCGAATGGGTGAAGTGACTGCGGATGACGGTACGGTGTTGCCTATAGCCGCTACCTTTGCCGGTGCACCTTCGCTGACGGt                                                                                                                                                                                                                                                                                <  1:1001373/289‑1 (MQ=255)
        cgacCAGCTGAATATCACCCCACCTCCGGACGTCAACGGTCTGAAAAAGGATCCATCCTTAAGTTTGTACGCCATTCCTGACGGTGATGTGAAAGGTCGCGTGGTAGCGATTTTACTTAATGATGAAGTGAGATCG‑GCAGACCTTCTGGCCATTCTCAAGGCG‑CTGAAGGCCAAAGGCGTTCATGCCAAACTGCTCTACTCCCGAATGGGTGAAGTGACTGCGGATGACGGTACGGTGTTGCCTATAGCCGCTACCTTTGCCGGTGCACCTTCGCTGACGGTCGATGCg                                                                                                                                                                                                                                                                         >  1:2535443/1‑289 (MQ=255)
                    tatCACCCCACCTCCGGACGTCAACGGTCTGAAAAAGGATCCATCCTTAAGTTTGTACGCCATTCCTGACGGTGATGTGAAAGGTCGCGTGGTAGCGATTTTACTTAATGATGAAGTGAGATCG‑GCAGACCTTCTGGCCATTCTCAAGGCG‑CTGAAGGCCAAAGGCGTTCATGCCAAACTGCTCTACTCCCGAATGGGTGAAGTGACTGCGGATGACGGTACGGTGTTGCCTATAGCCGCTACCTTTGCCGGTGCACCTTCGCTGACGGTCGATGCGGTCATTGTCCCt                                                                                                                                                                                                                                                             <  1:1683705/289‑1 (MQ=255)
                         ccccACCTCCGGACGTCAACGGTCTGAAAAAGGATCCATCCTTAAGTTTGTACGCCATTCCTGACGGTGATGTGAAAGGTCGCGTGGTAGCGATTTTACTTAATGATGAAGTGAGATCG‑GCAGACCTTCTGGCCATTCTCAAGGCG‑CTGAAGGCCAAAGGCGTTCATGCCAAACTGCTCTACTCCCGAATGGGTGAAGTGACTGCGGATGACGGTACGGTGTTGCCTATAGCCGCTACCTTTGCCGGTGCACCTTCGCTGACGGTCGATGCGGTCATTGTCCCTTGCgg                                                                                                                                                                                                                                                        <  1:153403/289‑1 (MQ=255)
                         ccccACCTCCGGACGTCAACGGTCTGAAAAAGGATCCATCCTTAAGTTTGTACGCCATTCCTGACGGTGATGTGAAAGGTCGCGTGGTAGCGATTTTACTTAATGATGAAGTGAGATCG‑GCAGACCTTCTGGCCATTCTCAAGGCG‑CTGAAGGCCAAAGGCGTTCATGCCAAACTGCTCTACTCCCGAATGGGTGAAGTGACTGCGGATGACGGTACGGTGTTGCCTATAGCCGCTACCTTTGCCGGTGCACCTTCGCTGACGGTCGATGCGGTCATTGTCCCTTGCg                                                                                                                                                                                                                                                         >  1:544307/1‑288 (MQ=255)
                           caaCCTCCGGACGTCAACGGTCGGAAAAAGGATCCATCCTTAAGTGTGTACGCCATTCCTGACGGTGATGTGAAAGGTCGCGTGGTAGCGATTTTACTTAATGATGAAGTGAGATCG‑GCAGACCTTCTGGCCATTCTCAAGGCG‑CTGAAGGCCAAAGGCGTTCATGCCAAACTGCTCTACTCCCGAATGGGTGAAGTGACTGCGGATGACGGTACGGTGTTGCCTATAGCCGCTACCTTTGCCGGTGCACCTTCGCTGACGGTCGATGCGGTCATTGTCCCTTGCGGCa                                                                                                                                                                                                                                                      <  1:1177074/287‑1 (MQ=255)
                            cACCTCCGGACGTCAACGGTCTGAAAAAGGATCTATCCTTAAGTTTGTACGCCATTCCTGACGGTAATGAGAAAGGTCGCGTGGTAGCGATTTTACTTAATGATGAAGTGAGATCG‑GCAGACCTTCTGGCCATTCACAAGGCG‑CTGCAGGCCAAAGGCGTTCATGCCAAACTGCTCTACTCCCGAATCGGTGAAGCGACGGCGGATGACGGTACGGTCTTGCCTATAGCCGCGACCTTTGCCGGTGCACCTTCCCCGACGGTCGATGAGGTCATTGTCCCTTCCGGCaa                                                                                                                                                                                                                                                     >  2:1651617/1‑289 (MQ=255)
                              ccTCCGGACGTCAACGGTCTGAAAAAGGATCCATCCTTAAGTTTGTACGCCATTCCTGACGGTGATGTGAAAGGTCGCGTGGTAGCGATTTTACTTAATGATGAAGTGAGATCG‑GCAGACCTTCTGGCCATTCTCAAGGCG‑CTGAAGGCCAAAGGCGTTCATGCCAAACTGCTCTACTCCCGAATGGGTGAAGTGACTGCGGATGACGGTACGGTGTTGCCTATAGCCGCTACCTTTGCCGGTGCACCTTCGCTGACGGTCGATGCGGTCATTGTCCCTTGCGGCAata                                                                                                                                                                                                                                                   >  2:1821534/1‑289 (MQ=255)
                                    gACGTCAACGGTCTGAAAAAGGATCCATCCTTAAGTTTGTACGCCATTCCTGACGGTGATGTGAAAGGTCGCGTGGTAGCGATTTTACTTAATGATGAAGTGAGATCG‑GCAGACCTTCTGGCCATTCTCAAGGCG‑CTGAAGGCCAAAGGCGTTCATGCCAAACTGCTCTACTCCCGAATGGGTGAAGTGACTGCGGATGACGGTACGGTGTTGCCTATAGCCGCTACCTTTGCCGGTGCACCTTCGCTGACGGTCGATGCGGTCATTGTCCCTTGCGGCAATATCGCgg                                                                                                                                                                                                                                             >  2:1225059/1‑289 (MQ=255)
                                    gACGTCAACGGTCTGAAAAAGGATCCATCCTTAAGTTTGTACGCCATTCCTGACGGTGATGTGAAAGGTCGCGTGGTAGCGATTTTACTTAATGATGAAGTGAGATCG‑GCAGACCTTCTGGCCATTCTCAAGGCG‑CTGAAGGCCAAAGGCGTTCATGCCAAACTGCTCTACTCCCGAATGGGTGAAGTGACTGCGGATGACGGTACGGTGTTGCCTATAGCCGCTACCTTTGCCGGTGCACCTTCGCTGACGGTCGATGCGGTCATTGTCCCTTGCGGCAATATCGCgg                                                                                                                                                                                                                                             >  1:123953/1‑289 (MQ=255)
                                        tCAACGGTCTGAAAAAGGATCCATCCTTAAGTTTGTACGCCATTCCTGACGGTGATGTGAAAGGTCGCGTGGTAGCGATTTTACTTAATGATGAAGTGAGATCG‑GCAGACCTTCTGGCCATTCTAAAGGCG‑CTGAAGGCCAAAGGCGTTCATGCCAAACTGCTCTACTCCCGAATGGGTGAAGTGACTGCGGATGACGGTACGGTGTTGCCTATAGCCGCTACCTTTGCCGGTGCACCTTCGCTGACGGTCGATGCGGTCATTGTCCCTTGCGGCAATATCGCGGata                                                                                                                                                                                                                                          >  1:2268046/1‑288 (MQ=255)
                                                cTGAAAAAGGATCCATCCTTAAGTTTGTACGCCATTCCTGACGGTGATGTGAAAGGTCGCGTGGTAGCGATTTTACTTAATGATGAAGTGAGATCG‑GCAGACCTTCTGGCCATTCTCAAGGCG‑CTGAAGGCCAAAGCCGTTCATGCCAAACTGCTCTACTCCCGAATGGGTGAAGTGACTGCGGATGACGGTACGGTGTTGCCTATAGCCGCTACCTTTGCCGGTGCACCTTCGCTGACGGTCGATGCGGTCATTGTCCCTTGCGGCAATATCGCGGATATCGCTGAc                                                                                                                                                                                                                                  <  2:301498/288‑1 (MQ=255)
                                                   aaaaaGGATCCATCCTTAAGTTTGTACGCCATTCCTGACGGTGATGTGAAAGGTCGCGTGGTAGCGATTTTACTTAATGATGAAGTGAGATCG‑GCAGACCTTCTGGCCATTCTCAAGGCG‑CTGAAGGCCAAAGGCGTTCATGCCAAACTGCTCTACTCCCGAATGGGTGAAGTGACTGCGGATGACGGTACGGTGTTGCCTATAGCCGCTACCTTTGCCGGTGCACCTTCGCTGACGGTCGATGCGGTCATTGTCCCTTGCGGCAATATCGCGGATATCGCTGACAACg                                                                                                                                                                                                                              <  2:258636/289‑1 (MQ=255)
                                                           tccatccTTAAGTTTGTACGCCATTCCTGACGGTGATGTGAAAGGTCGCGTGGTAGCGATTTTACTTAATGATGAAGTGAGATCG‑GCAGACCTTCTGGCCATTCTCAAGGCG‑CTGAAGGCCAAAGGCGTTCATGCCAAACTGCTCTACTCCCGTATGGGTGAAGTGACTGCGGATGACGGTACGGTGTTGCCTATAGCCGCTACCTTTGCCGGTGCACCTTCGCTGACGGTCGATGCGGTCATTGTCCCTTGCGGCAATATCGCGGATATCGCTGACAACGGCGATGcc                                                                                                                                                                                                                      <  2:2535443/289‑1 (MQ=255)
                                                             catccTTAAGTTTGTACGCCATTCCTGACGGTGATGTGAAAGGTCGCGTGGTAGCGATTTTACTTAATGATGAAGTGAGATCG‑GCAGACCTTCTGGCCATTCTCAAGGCG‑CTGAAGGCCAAAGGCGTTCATGCCAAACTGCTCTACTCCCGAATGGGTGAAGTGACTGCGGATGACGGTACGGTGTTGCCTATAGCCGCTACCTTTGCCGGTGCACCTTCGCTGACGGTCGATGCGGTCATTGTCCCTTGCGGCa                                                                                                                                                                                                                                                      <  1:657437/255‑1 (MQ=255)
                                                                ccgtAAGTTTTTACCCAATGCCTGACAGAGATGTGAAAGGGCTGATGGTAGCAAGTTTACTTAATGATGGAATGAGATCG‑GCAGACCTTCTGGCCATTCTCAAGGCG‑CGTAAGGCCAATGGCGTGCATGCCAAACTGCTCTACTCCCGAATGGGTGAAGTGACTGCGGATGACGGTACGGTGTTGCCTATAGACGCTACCTTTGCCGGTGCACCTGCGCTGACGGTCGATGCGGTCATTGTCCCTTGCGGCAATATCGCGGATATCGCTGACAACGGCGATGCCAacta                                                                                                                                                                                                                 <  2:185634/286‑1 (MQ=255)
                                                                ccTTAAGTTTGTACGCCATTCCTGACGGTGATGTGAAAGGTCGCGTGGTAGCGATTTTACTTAATGATGAAGTGAGATCG‑GCAGACCTTCTGGCCATTCTCAAGGCG‑CTGAAGGCCAAAGGCGTTCATGCCAAACTGCTCTACTCCCGAATGGGTGAAGTGACTGCGGATGAAGGTACGGTGTTGCCTATAGCCGCTACCTTTGCCGGTGCACCTTCGCTGACGGTCGATGCGGTCATTGTCCCTTGCGGCAATATCGCGGATATCGCTGACAACGGCGATGCCAacta                                                                                                                                                                                                                 <  2:2067330/289‑1 (MQ=255)
                                                                           tACGCCATTCCTGACGGTGATGTGAAAGGTCGCGTGGTAGCGATTTTACTTAATGATGAAGTGAGATCG‑GCAGACCTTCTGGCCATTCTCAAGGCG‑CTGAAGGCCAAAGGCGTTCATGCCAAACTGCTCTACTCCCGAATGGGTGAAGTGACTGCGGATGACGGTACGGTGTTGCCTATAGCCGCTACCTTTGCCGGTGCACCTTCGCTGACGGTCGATGCGGTCATTGTCCCTTGCGGCAATATCGCGGATATCGCTGACAACGGCGATGCCAACTACTACCTGATgg                                                                                                                                                                                                      >  2:275881/1‑289 (MQ=255)
                                                                            atgcgaTTCCTGAGGGTGATGTGAAAGGTCGCGTGGTAGCGATTTGACTTAATGAGGCAGTGAGATCG‑GCAGACCTTCTAGCCATTCGCAAGGCG‑CTGAAGGCCAACGGCGTTCATGCCAAACTGCTCTACTCCCGAATGGGTGAAGTGACTGCGGATGACGGTACGGTGTTGCCTATAGCCGCTACCTTTGCCGGTGCACCTTCGCTGACGGTCGATGCGGTCATTGTCCCTTGCGGCAATATCGCGGATATCGCTGACAACGGCGATGCCAACTACTACCTGATGGa                                                                                                                                                                                                     <  2:587778/284‑1 (MQ=255)
                                                                            acgcctgtgttGACGGGTATGTGAAAGGTGGCGGGGTTGCGATTTGACTTAATGATGAAGTGAGATCG‑GCAGACCTTCTGGCCATTCTCACGGCG‑CTGAAGGCCAAAGGCGTTCATGCCAAACTGCTCTACTCCCGAATGGGTGAAGTGACTGCGGATGACGGTACGGTGTTGCCTATAGCCGCTACCTTTGCCGGTGCACCTTCGCTGACGGTCGATGCGGTCATTGTCCCTTGCGGCAATATCGCGGATATCGCTGACAACGGCGATGCCAACTACTACCTGATGGa                                                                                                                                                                                                     <  2:1461381/279‑1 (MQ=255)
                                                                               caaTTCCTGACGGTGAGGTGAAAGGTTGCGTGGTAGCGATTTTACTTAATGATGAAGGGAGATCG‑GCAGACCTTCTGGCCATTCTCAAGGCG‑CTGAAGGCCAAAGGCGTTCATGCCAAACTGCTCTACTCCCGAATGGGTGAAGTGACTGCGGATGACGGTACGGTGTTGCCTATAGCCGCTACCTTTGCCGGTGCACCTTCGCTGACGGTCGATGCGGTCATTGTCCCTTGCGGCAATATCGCGGATATCGCTGACAACGGCGATGCCAACTACTACCTGATGGAAGc                                                                                                                                                                                                  <  2:1360852/287‑1 (MQ=255)
                                                                                   tCCTGACGGTGATGTGAAAGGTCGCGTGGTAGCGATTTTACTTAATGATGAAGTGAGATCG‑GCAGACCTTCTGGCCATTCTCAAGGCG‑CTGAAGGCCAAAGGCGTTCATGCCAAACTGCTCTACTCCCGAATGGGTGAAGTGACTGCGGATGACGGTACGGTGTTGCCTATAGCCGCTACCTTTGCCGGTGCACCTTCGCTGACGGTCGATGCGGTCATTGTCCCTTGCGGCAATATCGCGGATATCGCTGACAACGGCGATGCCAACTACTACCTGATGGAAGCCTAc                                                                                                                                                                                              >  1:765462/1‑289 (MQ=255)
                                                                                      tGACGGTGATGTGAAAGGTCGCGTGGTAGCGATTTTACTTAATGATGAAGTGAGATCG‑GCAGACCTTCTGGCCATTCTCAAGGCG‑CTGAAGGCCAAAGGCGTTCATGCCAAACTGCTCTACTCCCGAATGGGTGAAGTGACTGCGGATGACGGTACGGTGTTGCCTATAGCCGCTACCTTTGCCGGTGCACCTTCGCTGACGGTCGATGCGGTCATTGTCCCTTGCGGCAATATCGCGGATATCGCTGACAACGGCGATGCCAACTACTACCTGATGGAAGCCTACaaa                                                                                                                                                                                           <  1:1788091/289‑1 (MQ=255)
                                                                                       gACGGTGATGTGAAAGGTCGCGTGGGAGCGATTTTACTTAATGATGAAGTGAGATCG‑GCAGACCTTCTGGCCATTCTCAAGGCG‑CTGAAGGCCAAAGGCGTTCATGCCAAACTGCTCTACTCCCGAATGGGTGAAGTGACTGCGGATGACGGTACGGTGTTGCCTATAGCCGCTACCTTTGCCGGTGCACCTTCGCTGACGGTCGATGCGGTCATTGTCCCTTGCGGCAATATCGCGGATATCGCTGACAACGGCGATGCCAACTACTACCTGATGGAAGCCTACAAac                                                                                                                                                                                          <  2:451154/289‑1 (MQ=255)
                                                                                              aTGTGAAAGGTCGCGTGGTAGCGATTTTACTTAATGATGAAGTGAGATCG‑GCAGACCTTCTGGCCATTCTCAAGGCG‑CTGAAGGCCAAAGGCGTTCATGCCAAACTGCTCTACTCCCGAATGGGTGAAGTGACTGCGGATGACGGTACGGTGTTGCCTATAGCCGCTACCTTTGCCGGTGCACCTTCGCTGACGGTCGATGCGGTCATTGTCCCTTGCGGCAATATCGCGGATATCGCTGACAACGGCGATGCCAACTACTACCTGATGGAAGc                                                                                                                                                                                                  >  2:1752302/1‑274 (MQ=255)
                                                                                                    aaGGTCGCGTGGTAGCGATTTTACTTAATGATGAAGTGAGATCG‑GCAGACCTTCTGGCCATTCTCAAGGCG‑CTGAAGGCCAAAGGCGTTCATGCCAAACTGCTCTACTCCCGAATGGGTGAAGTGACTGCGGATGACGGTACGGTGTTGCCTATAGCCGCTACCTTTGCCGGTGCACCTTCGCTGACGGTCGATGCGGTCa                                                                                                                                                                                                                                                                     >  1:2671800/1‑201 (MQ=255)
                                                                                                    aaGGTCGCGTGGTAGCGATTTTACTTAATGATGAAGTGAGATCG‑GCAGACCTTCTGGCCATTCTCAAGGCG‑CTGAAGGCCAAAGGCGTTCATGCCAAACTGCTCTACTCCCGAATGGGTGAAGTGACTGCGGATGACGGTACGGTGTTGCCTATAGCCGCTACCTTTGCCGGTGCACCTTCGCTGACGGTCGATGCGGTCATTGTCCCTTGCGGCAATATCGCGGATATCGCTGACAACGGCGATGCCAACTACTACCTGATGGAAGCCTACAAACACCTTAAACCGa                                                                                                                                                                              <  2:723894/288‑1 (MQ=255)
                                                                                                          gcgTGGTAGCGATTTTACTTAATGATGAAGTGAGATCG‑GCAGACCTTCTGGCCATTCTCAAGGCG‑CTGAAGGCCAAAGGCGTTCATGCCAAACTGCTCTACTCCCGAATGGGTGAAGTGACTGCGGATGACGGTACGGTGTTGCCTATAGCCGCTACCTTTGCCGGTGCACCTTCGCTGACGGTCGATGCGGTCAtt                                                                                                                                                                                                                                                                   >  2:2406328/1‑197 (MQ=255)
                                                                                                           cgTGGTAGCGATTTTACTTAATGATGAAGTGAGCTCG‑GCAGACCTTCTGGCCATTCTCAAGGCG‑CTGAAGGCCAAAGGCGTTCATGCCAAACTGCTCTACTCCCGAATGGGTGAAGTGACTGCGGATGACGGTACGGTGTTGCCTATAGCCGCTACCTTTGCCGGTGCACCTTCGCTGACGGTCGATGCGGTCATTGTCCCTTTCGGCAATATCGCGGATAACGCTGACAACGGCGATGCCAACTACTACCTGATGGAAGCCTACAAACACCTTAAACCGATTGCGCTg                                                                                                                                                                      >  1:2463031/1‑289 (MQ=255)
                                                                                                           cgTGGTAGCGATTTTACTTAATGATGAAGTGAGATCG‑GCAGACCTTCTGGCCATTCTCAAGGCG‑CTGAAGGCCAAAGGCGTTCATGCCAAACTGCTCTACTCCCGAATGGGTGAAGTGACTGCGGATGACGGTACGGTGTTGCCTATAGCCGCTACCTTTGCCGGTGCACCTTCGCTGACGGTCGATGCGGTCATTTTCCCTTGCGGCAATATCGCGGATATCGCTGACAACTGCGATGCCAACTACTTCCTGATGGAAGCCTACAAAACCCTTAAACCGATTTCCCTg                                                                                                                                                                      >  2:1198572/1‑289 (MQ=255)
                                                                                                           cgTGGTAGCGATTTTACTTAATGATGAAGTGAGATCG‑GCAGACCTTCTGGCCATTCTCAAGGCG‑CTGAAGGCCAAAGGCGTTCATGCCAAACTGCTCTACTCCCGAATGGGTGAAGTGACTGCGGATGACGGTACGGTGTTGCCTATAGCCGCTACCTTTGCCGGTGCACCTTCGCTGACGGTCGATGCGGTCATTGTCCCTTGCGGCAATATCGCGGATATCGCTGACAACGGCGATGCCAACTACTACCTGATGGAAg                                                                                                                                                                                                   >  2:2041968/1‑260 (MQ=255)
                                                                                                           cgTGGTAGCGATTTTACTTAATGATGAAGTGAGATCG‑GCAGACCTTCTGGCCATTCTCAAGGCG‑CTGAAGGCCAAA‑GCGTTCATGCCAAACTGCTCTACTCCCGAATGGGTGAAGTGACTGCGGATGACGGTACGGTGTTGCCTATAGCCGCTACCTTTGCCGGTGCACCTTCGCTGACGGTCGATGCGGTCATTGTCCCTTGCGGCAATATCGCGGATATCGCTGACAACGGCGATGCCAACTACTACCTGATGGAAGCCTACAAACACCTTAAACCGATTGCGCttg                                                                                                                                                                     >  1:463916/1‑287 (MQ=255)
                                                                                                                         tACTTAATGATGAAGTGA‑AAGCGGCAGACCTTCTGGCCATTCTCAAGGCG‑CTGAAGGCCAAAGGCGTTCATGCCAAACTGCTCTACTCCCGAATGGGTGAAGTGACTGCGGATGACGATACGGTGTTGCCTATAGCCGCTACCTTTGCCGGTGCACCTTCGCTGACGGTCGATGCGGTCATTGTCCCTTGCGGCAATATCGCGGATATCGCTGACAACGGCGATGCCAACTACTACCTGATGGAAGCCTACAAACACCTTAAACCGATTGCGCTGGCGGGTGAcgcgcg                                                                                                                                                        <  2:349592/289‑1 (MQ=255)
                                                                                                                          aCTTAATGATGAAGTGAGATCG‑GCAGACCTTCTGGCCATTCTCAAGGCG‑CTGAAGGCCAAAGGCGTTCATGCCAAACTGCTCTACTCCCGAATGGGTGAAGTGACTGCGGATGACGGTACGGTGTTGCCTATAGCCGCTACCTTTGCCGGTGCACCTTCGCTGACGGTCGATGCGGTCATTGTCCCTTGCGGCAATATCGCGGATATCGCTGACAACGGCGATGCCAACTACTACCTGATGGAAGCCTACAAACACCTTAAACCGATTGCGCTGGCGGGTGACgcgcgc                                                                                                                                                       >  1:2317825/1‑289 (MQ=255)
                                                                                                                          aCTTAATGATGAAGTGAGATCG‑GCAGACCTTCTGGCCATTCTCAAGGCG‑CTGAAGGCCAAAGGCGTTCATGCCAAACTGCTCTACTCCCGAATGGGTGAAGTGACTGCGGATGACGGTACGGTGTTGCCTATAGCCGCTACCTTTGCCGGTGCACCTTCGCTGACGGTCGATGCGGTCATTGTCCCTTGCGGCAATATCGCGGATATCGCTGACAACGGCGATGCCAACTACTACCTGATGGAAGCCTACAAACACCTTAAACCGATTGCGCTGGCGGGTGACgcgcgc                                                                                                                                                       >  1:1916805/1‑289 (MQ=255)
                                                                                                                                tgatgaAGTGAGATCG‑GCAGACCTTCTGGCCATTCTCAAGGCG‑CTGAAGGCCAAAGGCGTTCATGCCAAACTGCTCTACTCCCGAATGGGTGAAGTGACTGCGGATGACGGTACGGTGTTGCCTATAGCCGCTACCTTTGCCGGTGCACCTTCGCTGACGGTCGATGCGGTCATTGTCCCTTGCGGCAATATCGCGGATATCGCTGACAACGGCGATGCCAACTACTACCTGATGGAAGCCTACAAACACCTTAAACCGATTGCGCTgg                                                                                                                                                                     <  1:722712/269‑1 (MQ=255)
                                                                                                                                     gaagggagactgtcAGACCTTCTGGCCATTCGCAAGGCG‑CTGAAGGCCAAAGGCGTTCATGCCAAACTGCTCTACTCCCGAATGGGTGAAGTGACTGCGGATGACGGTACGGTGTTGCCTATAGCCGCTACCTTTGCCGGTGCACCTTCGCTGACGGTCGATGCGGTCATTGTCCCTTGCGGCAATATCGCGGATATCGCTGACAACGGCGATGCCAACTACTACCTGATGGAAGCCTACAAACACCTTAAACCGATTGCGCTGGCGGGTGACGCGCGCAAGTTTAAAg                                                                                                                                             <  2:1539537/276‑1 (MQ=255)
                                                                                                                                      aGTGAGATCG‑GCAGACCTTCTGGCCATTCTCAAGGCG‑CTGAAGGCCAAAGGCGTTCATGCCAAACTGCTCTACTCCCGAATGGGTGAAGTGACTGCGGATGACGGTACGGTGTTGCCTATAGCCGCTACCTTTGCCGGTGCACCTTCGCTGACGGTCGATGCGGTCATTGTCCCTTGCGGCAATATCGCGGATATCGCTGACAACGGCGATGCCAACTACTACCTGATGGAAGCCTACAAACACCTTAAACCGATTGCGCTGGCGGGTGACGCGCGCAAGTTTAAAGca                                                                                                                                           >  1:2343669/1‑289 (MQ=255)
                                                                                                                                        gtgagatcggcAGACCTTCTGGCCATTCTCAAGGCG‑CTGAAGGCCAAAGGCGTTCATGCCAAACTGCTCTACTCCCGAATGGGTGAAGTGACTGCGGATGACGGTACGGTGTTGCCTATAGCCGCTACCTTTGCCGGTGCACCTTCGCTGACGGTCGATGCGGTCATTGTCCCTTGCGGCAATATCGCGGATATCGCTGACAACGGCGATGCCAACTACTACCTGATGGAAGCCTACAAACACCTTAAACCGATTGCGCTGGCGGGTGACgcgcgc                                                                                                                                                       <  1:1602117/267‑1 (MQ=255)
                                                                                                                                          gagatcggcAGACCTTCTGGCCATTCTCAAGGCG‑CTGAAGGCCAAAGGCGTTCATGCCAAACTGCTCTACTCCCGAATGGGTGAAGTGACTGCGGATGACGGTACGGTGTTGCCTATAGCCGCTACCTTTGCCGGTGCACCTTCGCTGACGGTCGATGCGGTCATTGTCCCTTGCGGCAATATCGCGGATATCGCTGACAACGGCGATGCCAACTACTACCTGATGGAAGCCTACAAACACCTTAAACCGATTGCGCTGGCGGGTGACGCGCGCAAGTTTAAAGcaa                                                                                                                                          <  1:355001/280‑1 (MQ=255)
                                                                                                                                             atcggcAGACCTTCTGGCCATTCTCAAGGCG‑CTGAAGGCCAAAGGCGTTCATGCCAAACTGCTCTACTCCCGAATGGGTGAAGTGACTGCGGATGACGGTACGGTGTTGCCTATAGCCGCTACCTTTGCCGGTGCACCTTCGCTGACGGTCGATGCGGTCATTGTCCCTTGCGGCAATATCGCGGATATCGCTGACAACGGCGATGCCAACTACTACCTGATGGAAGCCTACAAACACCTTAAACCGATTGCGCTGGCGGGTGACGCGCGCAAGTTTAAAGCAACAATc                                                                                                                                     >  2:2353557/5‑289 (MQ=255)
                                                                                                                                                ggcAGACCTTCTGGCCATTCTCAAGGCG‑CTGAAGGCCAAAGGCGTTCATGCCAAACTGCTCTACTCCCGAATGGGTGAAGTGACTGCGGATGACGGTACGGTGTTGCCTATAGCCGCTACCTTTGCCGGTGCACCTTCGCTGACGGTCGATGCGGTCATTGTCCCTTGCGGCAATATCGCGGATATCGCTGACAACGGCGATGCCAACTACTACCTGATGGAAGCCTACAAACACCTTAAACCGATTGCGCTGGCGGGTGACGCGCGCAAGTTTAAAGCAACAAACAAg                                                                                                                                  >  2:1279779/2‑289 (MQ=255)
                                                                                                                                                      ccTTCTGGCCATTCTCAAGGCG‑CTGAAGGCCAAAGGCGTTCATGCCAAACTGCTCTACTCCCGAATGGGTGAAGTGACTGCGGATGACGGTACGGTGTTGCCTATAGCCGCTACCTTTGCCGGTGCACCTTCGCTGACGGTCGATGCGGTCATTGTCCCTTGCGGCAATATCGCGGATATCGCTGACAACGGCGATGCCAACTACTACCTGATGGAAGCCTACAAACACCTTAAACCGATTGCGCTGGCGGGTGACGCGCGCAAGTTTAAAGCAACAATCAAGATCg                                                                                                                              <  1:787346/287‑1 (MQ=255)
                                                                                                                                                         tCTGGCCATTCTCAAGGCG‑CTGAAGGCCAAAGGCGTTCATGCCAAACTGCTCTACTCCCGAATGGGTGAAGTGACTGCGGATGACGGTACGGTGTTGCCTATAGCCGCTACCTTTGCCGGTGCACCTTCGCTGACGGTCGATGCGGTCATTGTCCCTTGCGGCAATATCGCGGATATCGCTGACAACGGCGATGCCAACTACTACCTGATGGAAGCCTACAAACACCTTAAACCGATTGCGCTGGCGGGTGACGCGCGCAAGTTTAAAGCAACAATCAAGATCGCTGa                                                                                                                          >  1:697494/1‑288 (MQ=255)
                                                                                                                                                         tCTGGCCATTCTCAAGGCG‑CTGAAGGCCAAAGGCGTTCATGCCAAACTGCTCTACTCCCGAATGGGTGAAGTGACTGCGGATGACGGTACGGTGTTGCCTATAGCCGCTACCTTTGCCGGTGCACCTTCGCTGACGGTCGATGCGGTCATTGTCCCTTGCGGCAATATCGCGGATATCGCTGACAACGGCGATGCCAACTACTACCTGATGGAAGCCTACAAACACCTTAAACCGATTGCGCTGGCGGGTGACGCGCGCAAGTTTAAAGCAACAATCAAGATCGCTGAc                                                                                                                         <  1:1489213/289‑1 (MQ=255)
                                                                                                                                                              ccATTCTCAAGGCG‑CTGAAGGCCAAAGGCGTTCATGCCAAACTGCGCTACTCCCGAATGGGTGAAGTGACTGCGGATGACGGTACGGTGTTGCCTATAGCCGCTACCTTTGCCGGTGCACCTTCGCTGACGGTCGATGCGGTCATTGTCCCTTGCGGCAATATCGCGGATATCGCTGACAACGGCGATGCCAACTACTACCTGATGGAAGCCTACAAACACCTTAAACCGATTGCGCTGGCGGGTGACGCGCGCAAGTTTAAAGCAACAATCAAGATCGCTGACCa                                                                                                                       <  2:2658486/286‑1 (MQ=255)
                                                                                                                                                                 ttCTCAAGGCG‑CTGAAGGCCAAAGGCGTTCATGCCAAACTGCTCTACTCCCGAATGGGTGAAGTGACTGTGGATGACGGTACGGTGTTGCCTATAGCCGCTACCTTTGCCGGTGCACCTTCGCTGACGGTCGATGCGGTCATTGTCCCTTGCGGCAATATCGCGGATATCGCTGACAACGGCGATGCCAACTACTACCTGATGGAAGCCTACAAACACCTTAAACCGATTGCGCTGGCGGGTGACGCGCGCAAGTTTAAAGCAACAATCAAGATCGCTGACCAGGGTga                                                                                                                 <  1:1748589/289‑1 (MQ=255)
                                                                                                                                                                    tcAAGGCG‑CTGAAGGCCAACGGCGTTCATGCCAAACTGCTCTACTCCCGAATGGGTGAAGTGACTGCGGATGACGGTACGGTGTTGCCTATAGCCGCTACCTTTGCCGGTGCACCTTCGCTGACGGTCGATGCGGTCATTGTCCCTTGCGGCAATATCGCGGATATCGCTGACAACGGCGATGCCAACTACTACCTGATGGAAGCCTACAAACACCTTAAACCGATTGCGCTGGCGGGTGACGCGCGCAAGTTTAAAGCAACAATCAAGATCGCTGACCAGGGTgaaga                                                                                                              <  2:393748/289‑1 (MQ=255)
                                                                                                                                                                    gcAAGGCGCCTGAGGGCCAAACG‑GTTCATGCCAAACTGCTCTACTCCCCAATGGGTGAAGTGACTGCGGATGACGGTACGGTGTTGCCTATAGCCGCTACCTTTGCCGGTGCACCTTCGCTGACGGTCGATGCGGTCATTGTCCCTTGCGGCAATATCGCGGATATCGCTGACAACGGCGATGCCAACTACTACCTGATGGAAGCCTACAAACACCTTAAACCGATTGCGCTGGCGGGTGACGCGCGCAAGTTTAAAGCAACAATCAAGATCGCTGACCAGGGTgaaga                                                                                                              <  2:463916/288‑1 (MQ=255)
                                                                                                                                                                          cg‑cTGAAGGCCAAAGGCGTTCATGCCAAACTGCTCTACTCCCGAATGGGTGAAGTGACTGCGGATGACGGTACGGTGTTGCCTATAGCCGCTACCTTTGCCGGTGCACCTTCGCTGACGGTCGATGCGGTCATTGTCCCTTGCGGCAATATCGCGGATATCGCTGACAACGGCGATGCCAACTACTACCTGATGGAAGCCTACAAACACCTTAAACCGATTGCGCTGGCGGGTGACGCGCGCAAGTTTAAAGCAACAATCAAGATCGCTGACCAGGGTGAAGAAggg                                                                                                          <  1:852800/287‑1 (MQ=255)
                                                                                                                                                                             cTGAAGGCCAAAGGCGTTCATGCCAAACTGCTCTACTCCCGAATGGGTGAAGTGACTGCGGATGACGGTACGGTGTTGCCTATAGCCGCTACCTTTGCCGGTGCACCTTCGCTGACGGTCGATGCGGTCATTGTCCCTTGCGGCAATATCGCGGATATCGCTGACAACGGCGATGCCAACTACTACCTGATGGAAGCCTACaa                                                                                                                                                                                            <  1:437110/203‑1 (MQ=255)
                                                                                                                                                                             cTGAAGGCCAAAGGCGTTCATGCCAAACTGCTCTACTCCCGAATGGGTGAAGTGACTGCGGATGACGGTACGGTGTTGCCTATAGCCGCTACCTTTGCCGGTGCACCTTCGCTGACGGTCGATGCGGTCATTGTCCCTTGCGGCAATATCGCGGATATCGCTGACAACGGCGATGCCAACTACTACCTGATGGAAGCCTACAAACACCTTAAACCGATTGCGCTGGCGGGTGACGCGCGCAAGTTTAAAGCAACAATCaa                                                                                                                                   >  1:1413648/1‑260 (MQ=255)
                                                                                                                                                                             cTGAAGGCCAAAGGCGTTCATGCCAAACTGCTCTACTCCCGAATGGGTGAAGTGACTGCGGATGACGGTACGGTGTTGCCTATAGCCGCTACCTTTGCCGGTGCACCTTCGCTGACGGTCGATGCGGTCATTGTCCCTTGCGGCAATATCGCGGATATCGCTGACAACGGCGATGCCAACTACTACCTGATGGAAGCCTACAAACACCTTAAACCGATTGCGCTGGCGGGTGACGCGCGCAAGTTTAAAGCAACAATCAAGATCGCTGACCAGGGTGAAGAAGGGATtg                                                                                                      >  1:32727/1‑289 (MQ=255)
                                                                                                                                                                             cTGAAGGCCAAAGGCGTTCATGCCAAACTGCTCTACTCCCGAATGGGTGAAGTGACTGCGGATGACGGTACGGTGTTGCCTATAGCCGCTACCTTTGCCGGTGCACCTTCGCTGACGGTCGATGCGGTCATTGTCCCTTGCGGCAATATCGCGGATATCGCTGACAACGGCGATGCCAACTACTACCTGATGGAAGCCTACAAACACCTTAAACCGATTGCGCTGGCGGGTGACGCGCGCAAGTTTAAAGCAACAATCAAGATCGCTGACCAGGGTGAAGAAGGGATtg                                                                                                      >  2:163757/1‑289 (MQ=255)
                                                                                                                                                                              tGAAGGCCAAAGGCGTTCATGCCAAACTGCTCTACTCCCGAATGGGTGAAGTGACTGCGGATGACGGTACGGTGTTGCCTATAGCCGCTACCTTTGCCGGTGCACCTTCGCTGACGGTCGATGCGGTCATTGTCCCTTGCGGCAATATCGCGGATATCGCTGACAACGGCGATGCCAACTACTACCTGATGGGAGCCTACAAACACCTTAAACCGATTGCGCTGGCGGGTGACGCGCGCAAGTTTAAAGCAACAATCAAGATCGCTGACCAGGGTGAAGAAGGGATtg                                                                                                      <  1:2088335/288‑1 (MQ=255)
                                                                                                                                                                              tGAAGGCCAAAGGCGTTCATGCCAAACTGCTCTACTCCCGAATGGGTGAAGTGACTGCGGATGACGGTACGGTGTTGCCTATAGCCGCTACCTTTGCCGGTGCACCTTCGCTGACGGTCGATGCGGTCATTGTCCCTTGCGGCAATATCGCGGATATCGCTGACAACGGCGATGCCAACTACTACCTGATGGAAGCCTACAAACACCTTAAACCGATTGCGCTGGCGGGTGACGCGCGCAAGTTTAAAGCAACAATCAAGATCGCTGACCAGGGTGAAGAAGGGATtgt                                                                                                     >  1:1023009/1‑289 (MQ=255)
                                                                                                                                                                              tGAAGGCCAAAGGCGTTCATGCCAAACTGCTCTACTCCCGAATGGGTGAAGTGACTGCGGATGACGGTACGGTGTTGCCTATAGCCGCTACCTTTGCCGGTGCACCTTCGCTGACGGTCGATGCGGTCATTGTCCCTTGCGGCAATATCGCGGATATCGCTGACAACGGCGATGCCAACTACTACCTGATGGAAGCCTACAAACACCTTAAACCGATTGCGCTGGCGGGTGACGCGCGCAAGTTTAAAGCAACAATCAAGATCGCTGACCAGGGTGAAGAAGGGATtgt                                                                                                     >  2:1056545/1‑289 (MQ=255)
                                                                                                                                                                                       aaGGCGTTCATGCCAAACTGCTCTACTCCCGAATGGGTGAAGTGACTGCGGATGACGGTACGGTGTTGCCTATAGCCGCTACCTTTGCCGGTGCACCTTCGCTGACGGTCGATGCGGTCATTGTCCCTTGCGGCAATATCGCGGATATCGCTGACAACGGCGATGcc                                                                                                                                                                                                                      <  1:2001304/167‑1 (MQ=255)
                                                                                                                                                                                        aGGCGTTCATGCCAAACTGCTCTACTCCCGAATGGGTGAAGTGACTGCGGATGACGGTACGGTGTTGCCTATAGCCGCTACCTTTGCCGGTGCACCTTCGCTGACGGTCGATGCGGTCATTGTCCCTTGCGGCAATATCGCGGATATCGCTGACAACGGCGATGCCAACTACTACCTGATGGAAGCCTACaaa                                                                                                                                                                                           <  1:1642368/193‑1 (MQ=255)
                                                                                                                                                                                             ttCATGCCAAACTGCTCTACTCCCGAATGGGTGAAGTGACTGCGGATGACGGTACGGTGTTGCCTATAGCCGCTACCTTTGCCGGTGCACCTTCGCTGACGGTCGATGCGGTCATTGTCCCTTGCGGCAATATCGCGGATATCGCTGACAACGGCGATGCCAACTACTACCTGATGGAAGCCTACaa                                                                                                                                                                                            >  2:2309838/1‑187 (MQ=255)
                                                                                                                                                                                             ttCATGCCAAACTGCTCTACTCCCGAATGGGTGAAGTGACTGCGGATGACGGTACGGTGTTGCCTATAGCCGCTACCTTTGCCGGTGCACCTTCGCTGACGGTCGATGCGGTCATTGTCCCTTGCGGCAATATCGCGGATATCGCTGACAACGGCGATGCCAACTACTACCTGATGGAAGCCTACAAACACCTTAAACCGATTGCGCTGGCGGGTGACGCGGTCAAGTTTAAAGCAACAATCAAGAACGCTGACCAGGGTGAAGAAGGGATTGTGGAAACGGACAgcg                                                                                       >  2:1145453/1‑288 (MQ=255)
                                                                                                                                                                                                  gCCAAACTGCTCTACTCCCGAATGGGTGAAGTGACTGCGGATGACGGTACGGTGTTGCCTATAGCCGCTACCTTTGCCGGTGCACCTTCGCTGACGGTCGATGCGGTCATTGTCCCTTGCGGCAATATCGCGGATATCGCTGACAACGGCGATGCCAACTACTACCTGATGGAAGCCTACAAACACCTTAAACCGATTGCGCTGGCGGGTGAcgcg                                                                                                                                                          >  2:545154/1‑216 (MQ=255)
                                                                                                                                                                                                          gCTCTACTCCCGAATGGGTGAAGTGACTGCGGATGACGGTACGGTGTTGCCTATAGCCGCTACCTTTGCCGGTGCACCTTCGCTGACGGTCGATGCGGTCATTGTCCCTTGCGGCAATATCGCGGATATCGCTGACAACGGCGATGCCAACTACTACCTGATGGAAGCCTACAAACACCTTAAACCGATTGCGCTGGCGGGTGACGCGCGCAAGTTTAAAGCAACAATCAAGATCGCTGAc                                                                                                                         <  1:288612/241‑1 (MQ=255)
                                                                                                                                                                                                           ctctACTCCCGAATGGGTGAAGTGACTGCGGATGACGGTACGGTGTTGCCTATAGCCGCTACCTTTGCCGGTGCACCTTCGCTGACGGTCGATGCGGTCATTGTCCCTTGCGGCAATATCGCGGATATCGCTGACAACGGCGATGCCAACTACTACCTGATGGAAGCCTACAAACACCTTAAACCGATTGCGCTGGCGGGTGACGCGCGCAAGTTTAAAGCAACAATCAAGATCGCTGAc                                                                                                                         >  2:1963371/1‑240 (MQ=255)
                                                                                                                                                                                                           ctctACTCCCGAATGGGTGAAGTGACTGCGGATGACGGTACGGTGTTGCCTATAGCCGCTACCTTTGCCGGTGCACCTTCGCTGACGGTCGATGCGGTCATTGTCCCTTGCGGCAATATCGCGGATATCGCTGACAACGGCGATGCCAACTACTACCTGATGGAAGCCTACAAACACCTTAAACCGATTGCGCTGGCGGGTGACGCGCGCAAGTTTAAAGCAAAAATCAAGAACGCAGACCAGGGCGAAGGCGGGGTTGGGGAAGCTGACAGCGCCGCCGGTAGTTTTa                                                                        >  2:1403604/1‑289 (MQ=255)
                                                                                                                                                                                                                cTCCCGAATGGGTGAAGTGACTGCGGATGACGGTACGGTGTTGCCTATAGCCGCTACCTTTGCCGGTGCACCTTCGCTGACGGTCGATGCGGTCATTGTCCCTTGCGGCAATATCGCGGATATCGCTGACAACGGCGATGCCAACTACTACCTGATGGAAGCCTACAAACACCTTAAACCGATTGCGCTGGCGGGTGACGCGCGCAAGTTTAAAGca                                                                                                                                           <  1:586765/217‑1 (MQ=255)
                                                                                                                                                                                                                   ccGAATGGGTGAAGTGACTGCGGATGACGGTACGGTGTTGCCTATAGCCGCTACCTTTGCCGGTGCACCTTCGCTGACGGTCGATGc                                                                                                                                                                                                                                                                          <  2:1505542/87‑1 (MQ=255)
                                                                                                                                                                                                                   ccGAATGGGTGAAGTGACTGCGGATGACGGTACGGTGTTGCCTATAGCCGCTACCTTTGCCGGTGCACCTTCGCTGACGGTCGATGCGGTCATTGTCCCTTGCGGCAATATCGCGGATATCGCTGACAACGGCGATGCCAACTACTACCTGATGGAAGCCTACAAACACCTTAAACCGATTGCGCTGGCGGGTGACGCGCGCAAGTTTAAAGCAACAATCAAGATCGCTGACCAGGGTGAAGAAGGGATTGTGGAAGGTGACAGCGCTGACGGTAGTGCTGTGGATGaa                                                                >  1:256226/1‑289 (MQ=255)
                                                                                                                                                                                                                          ggTGAAGTGACTGCGGATGACGGTACGGTGTTGCCTATAGCCGCTACCTTTGCCGGTGCACCTTCGCTGACGGTCGATGCGGTCATTGTCCCTTGCGGCAATATCGCGGATATCGCTGACAACGGCGATGCCAACTACTACCTGATGGAAGCCTACAAACACCTTAAACCGATTGCGCTGGCGGGTGACGCGCGCAAGTTTAAAGCAACAATCAAGATCGCTGACCAGGGTGAAGAAGGGATTGTGGAAGCTGACAGCGCTGACGGTAGTTTTATGGATGa                                                                 >  1:2152936/1‑281 (MQ=255)
                                                                                                                                                                                                                          ggTGAAGTGACTGCGGATGACGGTACGGTGTTGCCTATAGCCGCTACCTTTGCCGGTGCACCTTCGCTGACGGTCGATGCGGTCATTGTCCCTTGCGGCAATATCGCGGATATCGCTGACAACGGCGATGCCAACTACTACCTGATGGAAGCCTACAAACACCTTAAACCGATTGCGCTGGCGGGTGACGCGCGCAAGTTTAAAGCAACAATCAAGATCGCTGACCAGGGTGAAGAAGGGATTGTGGAAGCTGACAGCGCTGACGGTAGTTTTATGGATGa                                                                 <  2:2152936/281‑1 (MQ=255)
                                                                                                                                                                                                                           gTGAAGTGACTGCGGATGACGGTACGGTGTTGCCTATAGCCGCTACCTTTGCCGGTGCACCTTCGCTGACGGTCGATGCGGTCATTGTCCCTTGCGGCAATATCGCGGATATCGCTGACAACGGCGATGCCAACTACTACCTGATGGAAGCCTACAAACACCTTAAACCGATTGCGCTGGCGGGTGACGCGCGCAAGTTTAAAGCAACAATCAAGATCGCTGACCAGGGTGAAGAAGGGATTGTGGAAGCTGACAGCGCt                                                                                     <  1:2629641/260‑1 (MQ=255)
                                                                                                                                                                                                                             gAAGTGACTGCGGATGACGGTACGGTGTTGCCTATAGCCGCTACCTTTGCCGGTGCACCTTCGCTGACGGTCGATGCGGTCATTGTCCCTTGCGGCAATATCGCGGATATCGCTGACAACGGCGATGCCAACTACTACCTGATGGAAGCCTACCAACACCTTAAACCGATTGCGCTGGCGGGTGACGCGCGCAAGTTTAAAGCAACAATCAAGATCGCTGACCCGGGTGAAGCAGGGATTTTGGAAGCTGACAGCGCTGACGGTAGTTTTATGGAGGTACTGCTAACg                                                       >  2:178862/1‑288 (MQ=255)
                                                                                                                                                                                                                               aGTGACTGCGGATGACGGTACGGTGTTGCCTATAGCCGCTACCTTTGCCGGTGCACCTTCGCTGACGGTCGATGCGGTCATTGTCCCTTGCGGCAATATCGCGGATATCGCTGACAACGGCGATGCCAACTACTACCTGATGGAAGCCTACAAACACCTTAAACCGATTGCGCTGGCGGGTGACGCGCGCAAGTTTAAAGCAACAATCAAGATCGCTGACCAGGGTGAAGAAGGGATTGTGGAAGCTGACAGCGCTGACGGTAGTTTTATGGATGAACTGCTAACGCt                                                     <  2:1173471/288‑1 (MQ=255)
                                                                                                                                                                                                                                 tGACTGCGGATGACGGTACGGTGTTGCCTATAGCCGCTACCTTTGCCGGTGCACCTTCGCTGACGGTCGATGCGGTCATTGTCCCTTGCGGCAATATCGCGGATATCGCTGACAACGGCGATGCCAACTACTACCTGATGGAAGCCTACAAACACCTTAAACCGATTGCGCTGGCGGGTGACGCGCGCAAGTTTAAAGCAACAATCAAGATCGCTGACCAGGGTGAAGAAGGGATTGTGGAAGCTGACAGCGCTGACGGTAGTTTTATGGATGAACTGCTAACGCTGa                                                   <  2:2462803/288‑1 (MQ=255)
                                                                                                                                                                                                                                     tGCGGATGACGGTACGGTGTTGCCTATAGCCGCTACCTTTGCCGGTGCACCTTCGCTGACGGTCGATGCGGTCATTGTCCCTTGCGGCAATATCGCGGATATCGCTGACAACGGCGATGcc                                                                                                                                                                                                                      >  1:1288008/1‑121 (MQ=255)
                                                                                                                                                                                                                                     tGCGGATGACGGTACGGTGTTGCCTATAGCCGCTACCTTTGCCGGTGCACCTTCGCTGACGGTCGATGCGGTCATTGTCCCTTGCGGCAATATCGCGGATATCGCTGACAACGGCGATGCCAACTACTACCTGATGGAAGCCTACAAACACCTTAAACCGATTGCGCTGGCGGGTg                                                                                                                                                               >  2:854650/1‑176 (MQ=255)
                                                                                                                                                                                                                                     tGCGGATGACGGTACGGTGTTGCCTATAGCCGCTACCTTTGCCGGTGCACCTTCGCTGACGGTCGATGCGGTCATTGTCCCTTGCGGCAATATCGCGGATATCGCTGACAACGGCGATGCCAACTACTACCTGATGGAAGCCTACAAACACCTTAAACCGATTGCGCTGGCGGGTGACGCGCGCAAGTTTAAAGca                                                                                                                                           <  1:1382142/196‑1 (MQ=255)
                                                                                                                                                                                                                                     tGCGGATGACGGTACGGTGTTGCCTATAGCCGCTACCTTTGCCGGTGCACCTTCGCTGACGGTCGATGCGGTCATTGTCCCTTGCGGCAATATCGCGGATATCGCTGACAACGGCGATGCCAACTACTACCTGATGGAAGCCTACAAACACCTTAAACCGATTGCGCTGGCGGGTGACGCGCGCAAGTTTAAAGCAACAATCAAGATCGCTGAc                                                                                                                         >  1:1841836/1‑214 (MQ=255)
                                                                                                                                                                                                                                     tGCGGATGACGGTACGGTGTTGCCTATAGCCGCTACCTTTGCCGGTGCACCTTCGCTGACGGTCGATGCGGTCATTGTCCCTTGCGGCAATATCGCGGATATCGCTGACAACGGCGATGCCAACTACTACCTGATGGAAGCCTACAAACACCTTAAACCGATTGCGCTGGCGGGTGACGCGCGCAAGTTTAAAGCAACAATCAAGATCGCTGACCAGGGTGAAGAAGGGATTGTGGAAGCTGACAGCGCTGACGGTAGTTTTATGGATGAACTGCTAACGCTGATGgca                                              >  1:1811681/1‑289 (MQ=255)
                                                                                                                                                                                                                                         gATGACGGTACGGTGTTGCCTATAGCCGCTACCTTTGCCGGTGCACCTTCGCTGACGGTCGATGCGGTCATTGTCCCTTGCGGCAATATCGCGGATATCGCTGACAACGGCGATGCCAACTACTACCTGATGGAAGCCTACAAACACCTTAAACCGATTGCGCTGGCGGGTGACGCGCGCAAGTTTAAAGCAACAATCAAGATCGCTGACCAGGGTGAAGAAGGGATTGTGGAAGCTGACAGCGCTGACGGTAGTTTTATGGATGAACTGCTAACGCTGATGGCAGcac                                          >  2:1305053/1‑289 (MQ=255)
                                                                                                                                                                                                                                           tGACGGAACGGTGTTGCCTATCGCCGCTACCTTCGCCGGGGCACCTTCGATAACGGTCGATGCGGTCATTGTCCCTTGCGGCAATATCGCGGATATCGCTGACAACGGCGATGCCAACTACTACCTGATGGAAGCCTACAAACACCTTAAACCGATTGCGCTGGCGGGTGACGCGCGCAAGTTTAAAGCAACAATCAAGATCGCTGACCAGGTTGAAGAAGGGATTGTGGAAGCTGACAGCGCTGACGGTAGTTTTATGGATGAACTGCTAACGCTGATGGCAGcaca                                         <  2:2268046/288‑1 (MQ=255)
                                                                                                                                                                                                                                                 tacggtGTTGCCTATAGCCGCTACCTTTGCCGGTGCACCTTCGCTGACGGTCGATGCGGTCATTGTCCCTTGCGGCAATATCGCGGATATCGCTGACAACGGCGATGCCAACTACTACCTGATGGAAGCCTACAAACACCTTAAACCGATTGCGCTGGCGGGTGACGCGCGCAAGTTTAAAGCAACAATCAAGATCGCTGACCAGGGTGAAGAAGGGATTGTGGAAGCTGACAGCGCTGACGGTAGTTTTATGGATGAACTGCTAACGCTGATGgcag                                             <  2:1097069/278‑1 (MQ=255)
                                                                                                                                                                                                                                                 tacggtGTTGCCTATAGCCGCTACCTTTGCCGGTGCACCTTCGCTGACGGTCGATGCGGTCATTGTCCCTTGCGGCAATATCGCGGATATCGCTGACAACGGCGATGCCAACTACTACCTGATGGAAGCCTACAAACACCTTAAACCGATTGCGCTGGCGGGTGACGCGCGCAAGTTTAAAGCAACAATCAAGATCGCTGACCAGGGTGAAGAAGGGATTGTGGAAGCTGACAGCGCTGACGGTAGTTTTATGGATGAACTGCTAACGCTGATGgcag                                             >  1:1097069/1‑278 (MQ=255)
                                                                                                                                                                                                                                                        ttGCCTATAGCCGCTACCTTTGCCGGTGCACCTTCGCTGACGGTCGATGCGGTCATTGTCCCTTGCGGCAATATCGCGGATATCGCTGACAACGGCGATGCCAACTACTACCTGATGGAAGCCTACAAACACCTTAAACCGATTGCGCTGGCGGGTGACGCGCGCAAGTTTAAAGCAACAATCAAGATCGCTGACCa                                                                                                                       >  1:920911/1‑197 (MQ=255)
                                                                                                                                                                                                                                                         tGCCTATAGCCGCTACCTTTGCCGGTGCACCTTCGGTGGAGGTCGATGCGGTCATTGTCCCTTGCGGCAATATCGCGGATATCGCTGAGCACGGCGATGCCAACTACTACCTGATGGAAGCCTACAAACACCTTAAACCGATTGCGCTGGCGGGTGACGCGCGCAAGTTTAAAGCAACAATCAAGATCGCTGACCAGGGTGAAGAAGGGATTGTGGAAGCTGACAGCGCTGACGGTAGTTTTATGGATGAACTGCTAACGCTGATGGCAGCACACCGCGTGTggtcacg                          <  2:2114575/289‑6 (MQ=255)
                                                                                                                                                                                                                                                         tGCCTATAGCCGCTACCTTTGCCGGTGCACCTTCGCTGACGGTCGATGCGGTCATTGTCCCTTGCGGCAATATCGCGGATATCGCTGACAACGGCGATGCCAACTACTACCTGATGGAAGCCTACAAACACCTTAAACCGATTGCGCTGGCGGGTGACGCGCGCAAGTTTAAAGCAACAATCAAGATCGCTGACCAGGGTGAAGAAGGGATTGTGGAAGCTGACAGCGCTGACGGTAGTTTTATGGATGAACTGCTAACGCTGATGGCAGCACACCGCGTGTggtcacg                          <  1:856605/289‑6 (MQ=255)
                                                                                                                                                                                                                                                           ccTATAGCCGCTACCTTTGCCGGTGCACCTTCGCTGACGGTCGATGCGGTCATTGTCCCTTGCGGCAATATCGCGGATATCGCTGACAACGGCGATGCCAACTACTACCTGATGGAAGCCTACAAACACCTTAAACCGATTGCGCTGGCGGGTGACGCGCGCAAGTTTAAAGca                                                                                                                                           >  1:1322263/1‑174 (MQ=255)
                                                                                                                                                                                                                                                           ccTATAGCCGCTACCTTTGCCGGTGCACCTTCGCTGACGGTCGATGCGGTCATTGTCCCTTGCGGCAATATCGCGGATATCGCTGACAACGGCGATGCCAACTACTACCTGATGGAAGCCTACAAACACCTTAAACCGATTGCGCTGGCGGGTGACGCGCGCAAGTTTAAAGCAACAATCAAGATCGCTGAcc                                                                                                                        <  1:1202820/193‑1 (MQ=255)
                                                                                                                                                                                                                                                           ccTATAGCCGCTACCTTTGCCGGTGCACCTTCGCTGACGGTCGATGCGGTCATTGTCCCTTGCGGCAATATCGCGGATATCGCTGACAACGGCGATGCCAACTACTACCTGATGGAAGCCTACAAACACCTTAAACCGATTGCGCTGGCAGGTGACGCGCGCAAGTTTAAAGCAACAAGCAAGATCTCTGACCATGGTGAAGAAGGGATTGTGGAAGCTGACAGCGCTGACGGTAGTTTTATGGATGAACTGCTAACGCTGATGgcag                                             <  1:1572524/268‑1 (MQ=255)
                                                                                                                                                                                                                                                                aGCCGCTACCTTTGCCGGTGCACCTTCGCTGACGGTCGATGCGGTCATTGTCCCTTGCGGCAATATCGCGGATATCGCTGACAACGGCGATGCCAACTACTACCTGATGGa                                                                                                                                                                                                     >  2:771207/1‑111 (MQ=255)
                                                                                                                                                                                                                                                                aGCCGCTACCTTTGCCGGTGCACCTTCGCTGACGGTCGATGCGGTCATTGTCCCTTGCGGCAATATCGCGGATATCGCTGACAACGGCGATGCCAACTACTACCTGATGGAAGCCTACAAACACCTTAAACCGATTGCGCTGGCGGGTGACGCGCGCAAGTTTAAAGCAACAATCAAGATCGCTGACCAGGGTGAAGAAgg                                                                                                           >  2:513731/1‑201 (MQ=255)
                                                                                                                                                                                                                                                                aGCCGCTACCTTTGCCGGTGCACCTTCGCTGACGGTCGATGCGGTCATTGTCCCTTGCGGCAATATCGCGGATATCGCTGACAACGGCGATGCCAACTACTACCTGATGGAAGCCTACAAACACCTTAAACCGATTGCGCTGGCGGGTGACGCGCGCAAGTTTAAAGCAACAATCAAGATCGCTGACCAGGGTGAAGAAGGGATTGTGGAAGCTGACAGCGCTGACGGTAGTTTTATGGATg                                                                  >  1:194671/1‑242 (MQ=255)
                                                                                                                                                                                                                                                                aGCCGCTACCTTTGCCGGTGCACCTTCGCTGACGGTCGATGCGGTCATTGTCCCTTGCGGCAATATCGCGGATATCGCTGACAACGGCGATGCCAACTACTACCTGATGGAAGCCTACAAACACCTTAAACCGATTGCGCTGGCGGGTGACGCGCGCAAGTTTAAAGCAACAATCAAGATCGCTGACCAGGGTGAAGAAGGGATTGTGGAAGCTGACAGCGCTGACGGTAGTTTTATGGATGAACTGCTAACGCTGATGGCAGCACACCGCgtg                                  >  2:689428/1‑274 (MQ=255)
                                                                                                                                                                                                                                                                aGCCGCTACCTTTGCCGGTGCACCTTCGCTGACGGTCGATGCGGTCATTGTCCCTTGCGGCAATATCGCGGATATCGCTGACAACGGCGATGCCAACTACTACCTGATGGAAGCCTACAAACACCTTAAACCGATTGCGCTGGCGGGTGACGCGCGCAAGTTTAAAGCAACAATCAAGATCGCTGACCAGGGTGAAGAAGGGATTGTGGAAGCTGACAGCGCTGACGGTAGTTTTATGGATGAACTGCTAACGCTGATGGCAGCACACCGCGTGTGGTCACGCATTCCt                   <  2:1916805/289‑1 (MQ=255)
                                                                                                                                                                                                                                                                     cTACCTTTGCCGGTGCACCTTCGCTGACGGTCGATGGGGTAATTGTCCCTTGCGGCAATACCGAGGATATCGCTGACAACGGCGATGCCAACTACTACCTGATGGAACCCTACACACACCTTAACTAGATTGCGCTCGCGGGTGACGCGCGCAAGCTTAAAGCAACAATCAAGATCGCTGACCAGGGTGAAGAAGGGATTGTGGAAGATGACTGCGTTGACGGTAGTTTTATGGATGAACCGCTCACGCTGATGGAAGGCAACcgcgg                                   >  2:1572524/1‑267 (MQ=255)
                                                                                                                                                                                                                                                                     cTACCTTTGCCGGTGCACCTTCGCTGACGGTCGATGCGGTCATTGTCCCTTGCGGCAATATCGCGGATATCGCTGACAACGGCGATGCCAACTACTACCTGATGGAAGCCTACAAACACCTTAAACCGATTGCGCTGGCGGGTGACGCGCGCAAGTTTAAAGCAACAATCAAGATCGCTGACCAGGGTGAAGAAGGGATTGTGGAAGCTGACAGCGCTGACGGTAGTTTTATGGATGAACTGCTAACGCTGATGGCAGCACACCGCGGGTGGTCACGCCTTCCTAAGaa              >  2:899099/1‑288 (MQ=255)
                                                                                                                                                                                                                                                                            tGCCGGTGCACCTTCGCTGACGGTCGATGCGGTCATTGTCCCTTGCGGCAATATCGCGGATATCGCTGACAACGGCGATGCCAACTACTACCTGATGGAAGCCTACAAACACCTTAAACCGATTGCGCTGGCGGGTGACGCGCGCAAGTTTAAAGCAACAATCAAGATCGCTGACCAGGGTGAAGAAGGGATTGTGGAAGCTGACAGCGCTGACGGTAGTTTTATGGATGAACTGCTa                                                          >  2:1949207/1‑238 (MQ=255)
                                                                                                                                                                                                                                                                                  tGCACCTTCGCTGACGGTCGATGCGGTCATTGTCCCTTGCGGCAATATCGCGGATATCGCTGACAACGGCGATGCCAACTACTACCTGATGGAAGCCTACAAACACCTTAAACCGATTGCGCTGGCGGGTGACGCGCGCAAGTTTAAAGcaaca                                                                                                                                        <  1:1172351/154‑1 (MQ=255)
                                                                                                                                                                                                                                                                                  tGCACCTTCGCTGACGGTCGATGCGGTCATTGTCCCTTGCGGCAATATCGCGGATATCGCTGACAACGGCGATGCCAACTACTACCTGATGGAAGCCTACAAACACCTTAAACCGATTGCGCTGGCGGGTGACGCGCGCAAGTTTAAAGCAACAATCAAGATCGCTGACCAGGGTGAAGAAGGGATTGTGGAAGCTGACAGCGCTGACGGTAGTTTTATGGATGAACTGCTAACGCTGa                                                   <  1:237904/239‑1 (MQ=255)
                                                                                                                                                                                                                                                                                         |||                                                                                                                                                                                                                                                                                      
CTGACTGACGACCAGCTGAATATCACCCCACCTCCGGACGTCAACGGTCTGAAAAAGGATCCATCCTTAAGTTTGTACGCCATTCCTGACGGTGATGTGAAAGGTCGCGTGGTAGCGATTTTACTTAATGATGAAGTGAGAAGC‑GCAGACCTTCTGGCCATTCTCAAGGCG‑CTGAAGGCCAAAGGCGTTCATGCCAAACTGCTCTACTCCCGAATGGGTGAAGTGACTGCGGATGACGGTACGGTGTTGCCTATAGCCGCTACCTTTGCCGGTGCACCTAGCCTGACGGTCGATGCGGTCATTGTCCCTTGCGGCAATATCGCGGATATCGCTGACAACGGCGATGCCAACTACTACCTGATGGAAGCCTACAAACACCTTAAACCGATTGCGCTGGCGGGTGACGCGCGCAAGTTTAAAGCAACAATCAAGATCGCTGACCAGGGTGAAGAAGGGATTGTGGAAGCTGACAGCGCTGACGGTAGTTTTATGGATGAACTGCTAACGCTGATGGCAGCACACCGCGTGTGGAGTCGCATTCCTAAGATTGACAAAATTCC  >  CP042583/1497513‑1498072

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A