Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A6 F210 I1 R1 4928 340.1 5480506 96.9% 5310610 252.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA CP042583 1,508,769 3 bp→TGA intergenic (–/–) – / – –/–

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0425831,508,7690AT99.7% 726.1 / NA 305intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base A (0/0);  major base T (163/140);  minor base C (1/0);  total (165/140)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*CP0425831,508,7700CG99.0% 702.6 / NA 305intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base C (3/0);  new base G (160/140);  total (165/140)
Fisher's exact test for biased strand distribution p-value = 2.52e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*CP0425831,508,7710TA99.3% 710.6 / NA 305intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base T (2/0);  new base A (163/138);  total (165/140)
Fisher's exact test for biased strand distribution p-value = 5.02e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 305 total aligned reads displayed.

CAGCGCACAGATTCTTTGCCCTGGTCATAAAAATCTTCCAGGCACTGTTCCAGTTCGCGCGCCCGACAGGTTTCTCCGCTTTCAGCAAATAGCTGCCAACGACCGCCAAACATT‑CGATTCATATCGCTATGGCAATAACGTTTCCCTTGCTTCAGCGCAGGAGGATTCCCGAGGATCACCAGCAACCGCCAACGTAACGGGATCTCGCCGTGAGATATCGCGCCAAGCAACGCGTCCAGCATCTCCACAGGTGCCGTCTCATTACCGTGTATTCCCGCACTAATCACCAGTGCGCCTTGCGGTGGCGTTAATGGCGTCAGTTCCAGCACACCATCGCCCAGCCAGCGCCAGCGAACGCCGTTGATTTCTCGCTCGGTGATAACCGGTTTTTTACCCGTTAAGGTCAGAGCAAGAAAATTATCCATTGCCCCCTCCCTCGCGCTGGAACGGATAAACGCTACCGAGATTCAGTAATTGGCTCAATACATCCAGTGCTTCCCGCCCTTCGCGCAGCAATTGCGGGTCGGCCAGATCGGCAGCAGTAAGGCGATCGCGGTAGT  >  CP042583/1508491‑1509050
                                                                                                                                                                                                                                                                                       |||                                                                                                                                                                                                                                                                                       
      acaGATTCTTTACCCTTGTCATAAAAATCTTCCAGGCACTGTTCCAGTTCGCGCGCCCGACAGGTTTCTCCGCTTTCAGCAAATAGCTGCCAACGACCGCCAAACATT‑CGATTCATATCGCTATGGCAATAACGTTTCCCTTGCTTCAGCGCAGGAGGATTCCCGAGGATCACCAGCAACCGCCAACGTAACGGGATCTCGCCGTGAGATATCGCGCCAAGCAACGCGTCCAGCATCTCCACAGGTGCCGTCTCATTACCGTGTATTCCCGCTGAAATCACCAGTgcg                                                                                                                                                                                                                                                                            <  1:1333419/288‑1 (MQ=255)
           ttCTTTGCCCTGGTCATAAAAATCTTCCAGGCACTGTTCCAGTTCGCGCGCCCGACAGGTTTCTCCGCTTTCAGCAAATAGCTGCCAACGACCGCCAAACATT‑CGATTCATATCGCTATGGCAATAACGTTTCCCTTGCTTCAGCGCAGGAGGATTCCCGAGGATCACCAGCAACCGCCAACGTAACGGGATCTCGCCGTGAGATATCGCGCCAAGCAACGCGTCCAGCATCTCCACAGGTGCCGTCTCATTACCGTGTATTCCCGCTGAAATCACCAGTGCGCCTTg                                                                                                                                                                                                                                                                       <  1:1587953/288‑1 (MQ=255)
            tCTTTGCCCTGGTCATAAAAATCTTCCAGGCACTGTTCCAGTTCGCGCGCCCGACAGGTTTCTCCGCTTTCAGCAAATAGCTGCCAACGACCGCCAAACATT‑CGATTCATATCGCTATGGCAATAACGTTTCCCTTGCTTCAGCGCAGGAGGATTCCCGAGGATCACCAGCAACCGCCAACGTAACGGGATCTCGCCGTGAGATATCGCGCCAAGCAACGCGTCCAGCATCTCCACAGGTGCCGTCTCATTACCGTGTATTCCCGCTGAAATCACCAGTGCGCCTTGCg                                                                                                                                                                                                                                                                     <  1:786188/289‑1 (MQ=255)
                      ggTCATAAAAATCTTCCAGGCACTGTTCCAGTTCGCGCGCCCGACAGGTTTCTCCGCTTTCAGCAAATAGCTGCCAACGACCGCCAAACATT‑CGATTCATATCGCTATGGCAATAACGTTTCCCTTGCTTCAGCGCAGGAGGATTCCCGAGGATCACCAGCAACCGCCAACGTAACGGGATCTCGCCGTGAGATATCGCGCCAAGCAACGCGTCCAGCATCTCCACAGGTGCCGTCTCATTACCGTGTATTCCCGCTGAAATCACCAGTGCGCCTTGCGGTGGCGTTaa                                                                                                                                                                                                                                                           >  1:391302/1‑289 (MQ=255)
                      ggTAATAAAAATCTCCCAGGCACTGTTCCAGTTCGCGCGCCCGACAGCTGTCTCCGCTTTCACCAAATAGCTGCCAACGACCGCCAAACATT‑CGATTCATATCCCTATGGCAATCACGTTTCCCTTCCTTCAGCGCAGGCCGATTCCCGCAGATCACCAGCAACCTCCAACGTAACGCGATCCCGCCGTGCGATGTCGCGCCAAGCAACGCGTCCAACTGCCCCCCCGGCTCCCCGTCATTACCGCGTCTTCCCCCTCTAATCACCACCGCGCCtttccttggctctct                                                                                                                                                                                                                                                           >  2:2039175/1‑276 (MQ=255)
                            aaaaaTCTTCCAGGCACTGTTCCAGTTCGCGCGCCCGACAGGTTTCTCCGCTTTCAGCAAATAGCTGCCAACGACCGCCAAACATT‑CGATTCATATCGCTATGGCAATAACGTTTCCCTTGCTTCAGCGCAGGAGGATTCCCGAGGATCACCAGCAACCGCCAACGTAACGGGATCCCGCCGTGAGATATCGCGCCCAGCAACGAGTCCCGCATCTCCACAGGTGCCGTCTCATTACCGTGTATTCCCGCTGAAATCACCCGTGCGCCTTGCGGTGGCCGTAATGGct                                                                                                                                                                                                                                                      >  2:33434/1‑287 (MQ=255)
                             aaaaTCTTCCAGGCACTGTTCCAGTTCGCGCGCCCGACAGGTTTCTCCGCTTTCAGCAAATAGCTGCCAACGACCGCCAAACATT‑CGATTCATATCGCTATGGCAATAACGTTTCCCTTGCTTCAGCGCAGGAGGATTCCCGAGGATCACCAGCAACCGCCAACGTAACGGGATCTCGCCGTGAGATATCGCGCCAAGCAACGCGTCCAGCATCTCCACAGGTGCCGTCTCATTACCGTGTATTCCCGCTGAAATCACCAGTGCGCCTTGCGGTGGCGTTAATGGCGTc                                                                                                                                                                                                                                                    <  2:391302/289‑1 (MQ=255)
                                     ccAGGCACTGTTCCAGTTCGCGCGCCCGACAGGTTTCTCCGCTTTCAGCAAATAGCTGCCAACGACCGCCAAACATT‑CGATTCATATCGCTATGGCAATAACGTTTCCCTTGCTTCAGCGCAGGAGGATTCCCGAGGATCACCAGCAACCGCCAACGTAACGGGATCTCGCCGTGAGATATCGCGCCAAGCAACGCGTCCAGCATCTCCACAGGTGCCGTCTCATTACCGTGTATTCCCGCTGAAATCACCAGTGCGCCTTGCGGTGGCGTTAATGGCGTCAGTTCCAg                                                                                                                                                                                                                                            <  2:2043729/289‑1 (MQ=255)
                                             tGTTCCAGTTCGCGCGCCCGACAGGTTTCTCCGCTTTCAGCAAATAGCTGCCAACGACCGCCAAACATT‑CGATTCATATCGCTATGGCAATAACGTTTCCCTTGCTTCAGCGCAGGAGGATTCCCGAGGATCACCAGCAACCGCCAACGTAACGGGATCTCGCCGTGAGATATCGCGCCAAGCAACGCGTCCAGCATCTCCACAGGTGCCGTCTCATTACCGTGTATTCCCGCTGAAATCACCAGTGCGCCTTGCGGTGGCGTTAATGGCGTCAGTTCCAGCACACCa                                                                                                                                                                                                                                     >  1:265646/1‑288 (MQ=255)
                                               ttCCAGTTCGCGCGCCCGACAGGTTTCTCCGCTTTCAGCAAATAGCTGCCAACGACCGCCAAACATT‑CGATTCATATCGCTATGGCAATAACGTTTCCCTTGCTTCAGCGCAGGAGGATTCCCGAGGATCACCAGCAACCGCCAACGTAACGGGATCTCGCCGTGAGATATCGCGCCAAGCAACGCGTCCAGCATCTCCACAGGTGCCGTCTCATTACCGTGTATTCCCGCTGAAATCACCAGTGCGCCTTGCGGTGGCGTTAATGGCGTCAGTTCCAGCACACCATc                                                                                                                                                                                                                                   >  2:1630325/1‑288 (MQ=255)
                                               ttCCAGTTCGCGCGCCCGACAGGTTTCTCCGCTTTCAGCAAATAGCTGCCAACGACCGCCAAACATT‑CGATTCATATCGCTATGGCAATAACGTTTCCCTTGCTTCAGCGCAGGAGGATTCCCGAGGATCACCAGCAACCGCCAACGTAACGGGATCTCGCCGTGAGATATCGCGCCAAGCAACGCGTCCAGCATCTCCACAGGTGCCGTCTCATTACCGTGTATTCCCGCTGAAATCACCAGTGCGCCTTGCGGTGGCGTTAATGGCGTCAGTTCCAGCACACCATc                                                                                                                                                                                                                                   >  2:464928/1‑288 (MQ=255)
                                               ttCCAGTTCGCGCGCCCAACAGGTTTCTCCGCTTTCAGCAAATAGCTGCCAACGACCGCCAAACATT‑CGATTCATATCGCTATGGCAATAACGTTTCCCTTGCTTCAGCGCAGGAGGATTCCCGAGGATCACCAGCAACCGCCAACGTAACGGGATCTCGCCGTGAGATATCGCGCCAAGCAACGCGTCCAGCATCTCCACAGGTGCCGTCTCATTACCGTGTATTCCCGCTGAAATCACCAGTGCGCCTTGCGGTGGCGTTAATGGCGTCAGTTCCAGCACACCATc                                                                                                                                                                                                                                   >  1:1716653/1‑288 (MQ=255)
                                                       cgcgcgCCCGACAGGTTTCTCCGCTTTCAGCAAATAGCTGCCAACGACCGCCAAACATT‑CGATTCATATCGCTATGGCAATAACGTTTCCCTTGCTTCAGCGCAGGAGGATTCCCGAGGATCACCAGCAACCGCCAACGTAACGGGATCTCGCCGTGAGATATCGCGCCAAGCAACGCGTCCAGCATCTCCACAGGTGCCGTCTCATTACCGTGTATTCCCGCTGAAATCACCAGTGCGCCTTGCGGTGGCGTTAATGGCGTCAGTTCCAGCACACCATCGCccagcc                                                                                                                                                                                                                           >  2:1056877/1‑288 (MQ=255)
                                                         cgcgcCCGACAGGTTTCTCCGCTTTCAGCAAATAGCTGCCAACGACCGCCAAACATT‑CGATTCATATCGCTATGGCAATAACGTTTCCCTTGCTTCAGCGCAGGAGGATTCCCGAGGATCACCAGCAACCGCCAACGTAACGGGATCTCGCCGTGAGATATCGCGCCAAGCAACGCGTCCAGCATCTCCACAGGTGCCGTCTCATTACCGTGTATTCCCGCTGAAATCACCAGTGGGCCTTGCGGTGGCGTTAATGGCGTCAGTTCCAGCACACCATCGCccagccag                                                                                                                                                                                                                         >  1:1166619/1‑288 (MQ=255)
                                                         cgcgcCCGACAGGTTTCTCCGCTTTCAGCAAATAGCTGCCAACGACCGCCAAACATT‑CGATTCATATCGCTATGGCAATAACGTTTCCCTTGCTTCAGCGCAGGAGGATTCCCGAGGATCACCAGCAACCGCCAACGTAACGGGATCTCGCCGTGAGATATCGCGCCAAGCAACGCGTCCAGCATCTCCACAGGTGCCGTCTCATTACCGTGTATTCCCGCTGAAATCACCAGTGCGCCTTGTGGTGGCGTTACTGGCGGCAGGTCCAGCACACCACCGCcccgccag                                                                                                                                                                                                                         >  2:1187627/1‑288 (MQ=255)
                                                         cgcgcCCGACAGGTTTCTCCGCTTTCAGCAAATAGCTGCCAACGACCGCCAAACATT‑CGATTCATATCGCTATGGCAATAACGTTTCCCTTGCTTCAGCGCAGGAGGATTCCCGAGGATCACCAGCAACCGCCAACGTAACGGGATCTCGCCGTGAGATATCGCGCCAAGCAACGCGTCCAGCATCTCCACAGGTGCCGTCTCATTACCGTGTATTCCCGCTGAAATCACCAGTGCGCCTTGCGGTGGCGTTAATGGCGTCAGt                                                                                                                                                                                                                                                 >  1:826166/1‑264 (MQ=255)
                                                                      tttCTCCGCTTTCACAAAATAGCTGCCAACGACCGCCCAACATT‑CGATTCATATCGCTATGGCAATAACGTTTCCCGTGCTTCAGCGCAGGAGGATTCCCGAGGATCACCAGCAACCGCCAACGTAACGGGATCTCGCCGTGAGATATCGCGCCAAGCAACGCGTCCAGCATCTCCACAGGTGCCGTCTCATTACCGTGTATTCCCGCTGAAATCACCAGTGCGCCTTGCGGGGGCGTTAATGGCGTCAGTTCCAGCACACCATCGCCCAGCCAGCGCCAGCGAACGc                                                                                                                                                                                                            <  2:1010505/288‑1 (MQ=255)
                                                                        tctcCGCTTTCAGCAAATAGCTGCCAACGACCGCCAAACATT‑CGATTCATATCGCTATGGCAATAACGTTTCCCTTGCTTCAGCGCAGGAGGATTCCCGAGGATCACCAGCAACCGCCAACGTAACGGGATCTCGCCGTGAGATATCGCGCCAAGCAACGCGTCCAGCATCTCCACAGGTGCCGTCTCCTTACCGTTTATTCCCGCTGAAATCACCAGTGCGCCTTGCGGTGGCGTTAATGGCGTCAGTTCCAGCCCACCATTTCCCAGCCAACCCAAGCTAACCCCgg                                                                                                                                                                                                         >  2:2447600/1‑288 (MQ=255)
                                                                          tcCGCTTTCAGCAAATAGCTGCCAACGACCGCCAAACATT‑CGATTCATATCGCTATGGCAATAACGTTTCCCTTGCTTCAGCGCAGGAGGATTCCCGAGGATCACCAGCAACCGCCAACGTAACGGGATCTCGCCGTGAGATATCGCGCCAAGCAACGCGTCCAGCATCTCCACAGGTGCCGTCTCATTACCGTGTATTCCCGCTGAAATCACCAGTGCGCCTTGCGGTGGCGTTAATGGCGTCAGTTCCAGCACAcc                                                                                                                                                                                                                                      <  1:1864959/258‑1 (MQ=255)
                                                                          tcCGCTTTCAGCAAATAGCTGCCAACGACCGCCAAACATT‑CGATTCATATCGCTATGGCAATAACGTTTCCCTTGCTTCAGCGCAGGAGGATTCCCGAGGATCACCAGCAACCGCCAACGTAACGGGATCTCGCCGTGAGATATCGCGCCAAGCAACGCGTCCAGCATCTCCACAGGTGCCGTCTCATTACCGTGTATTCCCGCTGAAATCACCAGTGCGCCTTGCGGTGGCGTTAATGGCGTCAGTTCCAGCACACCATCGCCCAGCCAGCGCCAGCGAACGCCGTTg                                                                                                                                                                                                       >  1:2499697/1‑289 (MQ=255)
                                                                            cGCTTTCAGCAAATAGCTGCCAACGACCGCCAAACATT‑CGATTCATATCGCTATGGCAATAACGTTTCCCTTGCTTCAGCGCAGGAGGATTCCCGAGGATCACCAGCAACCGCCAACGTAACGGGATCTCGCCGTGAGATATCGCGCCAAGCAACGCGTCCAGCATCTCCACAGGTGCCGTCTCATTACCGTGTATTCCCGCTGAAATCACCAGTGCGCCTTGCGGTGGCGTTAATGGCGTCAGTTCCAGCACACCATCGCCCAGCCAGCGCCAGCGAACGCCGTTg                                                                                                                                                                                                       >  2:1845167/1‑287 (MQ=255)
                                                                               tttCAGCAAATAGCTGCCAACGACCGCCAAACATT‑CGATTCATATCGCTATGGCAATAACGTTTCCCTTGCTTCAGCGCAGGAGGATTCCCGAGGATCACCAGCAACCGCCAACGTAACGGGATCTCGCCGTGAGATATCGCGCCCAGCAACGCGTCCAGCATATCCACAGGTGCCGTCTCATTACCGTGTATTCCCGCTGAAATCACCAGTGCGCCTGGCGGTAGCGTCACTGTCGTCAGTTCCAGCACACCATCGCCCATCCCACGCTAGCCAActcgcgtaattc                                                                                                                                                                                                   >  2:899464/1‑277 (MQ=255)
                                                                                   aGCAAATAGCTGCCAACGACCGCCAAACATT‑CGATTCATATCGCTATGGCAATAACGTTTCCCTTGCTTCAGCGCAGGAGGATTCCCGAGGATCACCAGCAACCGCCAACGTAACGGGATCTCGCCGTGAGATATCGCGCCAAGCAACGCGTCCAGCATCTCCACAGGTGCCGTCTCATTACCGTGTATTCCCGCTGAAATCACCAGTGCGCCTTGCGGTGGCGTTAATGGCGTCAGTTCCAGCACACCATCGCCCACCCCGCGCCAGCGAACGCCTTTGTTTTctcg                                                                                                                                                                                               >  2:1606035/1‑288 (MQ=255)
                                                                                    acAAATAGCTGCCAACGACCGCCAAACATT‑CGATTCATATCGCTATGGCAATAACGTTTCCCTTGCTTCAGCGCAGGAGGATTCCCGAGGATCACCAGCAACCGCCAACGTAACGGGATCTCGCCGTGAGATATCGCGCCAAGCAACGCGTCCAGCATCTCCACAGGTGCCGTCTCATTACCGTGTATTCCCGCTGAAATCACCAGTGCGCCTTGCGGTGGCGTTAATGGCGTCAGTTCCAGCACACCATCGCCCAGCCAGCGCCAGCGAACGCCGTTGATTTctcgct                                                                                                                                                                                             <  2:265646/288‑1 (MQ=255)
                                                                                     cAAATAGC‑GCCCACGACCCCCCAACCTTCCGATTCATACCGTGATGGCAATACCTTTCCCCTTGCTTCACTCCAGGAGGATTCCCGAGGATCACCAGCAACCGCCAACGTAACGGGATCTCGCCGTGAGATATCGCGCCAAGCAACGCGTCCAGCATCTCCACAGGTGCCGTCTCATTACCGTGTATTCCCGCTGAAATCACCAGTGCGCCTTGCGGTGGCGTTAATGGCGTCAGTTCCAGCACACCATCGCCCAGCCAGCGCCAGCGAACGCCGTTGATTTctcgctc                                                                                                                                                                                            <  2:957795/289‑1 (MQ=255)
                                                                                      aaaTAGCTGCCAACGACCGCCAAACATT‑CGATTCATATCGCTATGGCAATAACGTTTCCCTTGCTTCAGCGCAGGAGGATTCCCGAGGATCACCAGCAACCGCCAACGTAACGGGATCTCGCCGTGAGATATCGCGCCAAGCAACGCGTCCAGCATCTCCACAGGTGCCGTCTCATTACCGTGTATTCCCGCTGAAATCACCAGTGCGCCTTGCGGTGGCGTTAATGGCGTCAGTTCCAGCACACCATCGCCCAGCCAGCGCCAGCGAACGCCGTTGATTTctcgct                                                                                                                                                                                             <  1:2142223/287‑1 (MQ=255)
                                                                                      aaaTAGCTGCCAACGACCGCCAAACATT‑CGATTCATATCGCTATGGCAATAACGTTTCCCTTGCTTCAGCGCAGGAGGATTCCCGAGGATCACCAGCAACCGCCAACGTAACGGGATCTCGCCGTGAGATATCGCGCCAAGCAACGCGTCCAGCATCTCCACAGGTGCCGTCTCATTACCGTGTATTCCCGCTGAAATCACCAGTGCGCCTTGCGGTGGCGTTAATGGCGTCAGTTCCAGCACACCATCGCCCAGCCAGCGCCAGCGAACGCCGTTGATTTctcgct                                                                                                                                                                                             <  2:589761/287‑1 (MQ=255)
                                                                                               ccAACGACCGCCAAACATT‑CGATTCATATCGCTATGGCAATAACGTTTCCCTTGCTTCAGCGCAGGAGGATTCCCGAGGATCACCAGCAACCGCCAACGTAACGGGATCTCGCCGTGAGATATCGCGCCAAGCAACGCGTCCAGCATCTCCACAGGTGCCGTCTCATTACCGTGTATTCCTGCTGAAATCACCAGTGCGCCTTGCGGTGGCGTTAATGGCGTCAGTTCCAGCACACCATCGCCCAGCCAGCGCCGGCGACCGCCGGTGATCTCTCGCACGGTGATAAcc                                                                                                                                                                                  >  1:960192/1‑289 (MQ=255)
                                                                                                       cGCCAAACATT‑CGATTCATATCGCTATGGCAATAACGTTTCCCTTGCTTCAGCGCAGGAGGATTCCCGAGGATCACCAGCAACCGCCAACGTAACGGGATCTCGCCGTGAGATATCGCGCCAAGCAACGCGTCCAGCATCTCCACAGGTGCCGTCTCATTACCGTGTATTCCCGCTGAAATCACCAGTGCGCCTTGCGGTGGCGTTAATGGCTTCAGTTCCAGCACACCATCGCCCAGCCAGCGCCCGCCACCGCCGCTGTTTTCTCGCTCGTTGATAACCCGtttttt                                                                                                                                                                          >  2:2385589/1‑289 (MQ=255)
                                                                                                            aaCATT‑CGATTCATATCGCTATGGCAATAACGTTTCCCTTGCTTCAGCGCAGGAGGATTCCCGAGGATCACCAGCAACCGCCAACGTAACGGGATCTCGCCGTGAGATATCGCGCCAAGCAACGCTTCCAGCATCTCCACAGGTGCCGTCCCATTACCGTGTATTCCCGCTTAAATCACCAGTGCGCCTTGCGGTGGCGTTAATGGCTTCATTTCCAGCACACCATCGCCCATCCAGCCGCAGCGAACGCCCGTGATTTCTCTCTGGGTCAGAACCGGTTTGTTAtcc                                                                                                                                                                      >  2:283397/1‑288 (MQ=255)
                                                                                                                 t‑CGATTCATATCGCTATGGCAATAACGTTTCCCTTGCTTCAGCGCAGGAGGATTCCCGAGGATCACCAGCAACCGCCAACGTAACGGGATCTCGCCGTGAGATATCGCGCCAAGCAACGCGTCCAGCATCTCCACAGGTGCCGTCTCATTACCGTGTATTCCCGCTGAAATCAc                                                                                                                                                                                                                                                                                   >  1:2043582/1‑174 (MQ=255)
                                                                                                                    gATTCATATCGCTATGGCAATAACGTTTCCCTTGCTTCAGCGCAGGAGGATTCCCGAGGATCACCAGCAACCGCCAACGTAACGGGATCTCGCCGTGAGATATCGCGCCAAGCAACGCGTCCAGCATCTCCACAGGTGCCGTCTCATTACCGTGTATTCCCGCTGAAATCACCAGTGCGCCTTGCGGTGGCGTTAATGGCGTCAGTTCCAGCACACCATCGCCCAGCCAGCGCCAGCGAACGCCGTTGATTTCTCGCTCGGTGATAACCGGTTTTTTACCCGTTAAGGt                                                                                                                                                              <  1:1630325/289‑1 (MQ=255)
                                                                                                                       tCATATCGCTATGGCAATAACGTTTCCCTTGCTTCAGCGCAGGAGGATTCCCGAGGATCACCAGCAACCGCCAACGTAACGGGATCTCGCCGTGAGATATCGCGCCAAGCAACGCGTCCAGCATCTCCACAGGTGCCGTCTCCTTACCGTGTATTCCCGCTGAAATCACCAGTGCGCCTTGCGGTTGCGTTAATGGCGTCACTTCCAGCACACCATCGCCCAGCCAGCGCCACCGCACGCCGTTGATTTCTCGCTCGGTGATAACCGGTTTCTTACTCGTTAAGGTccg                                                                                                                                                           >  2:766618/1‑287 (MQ=255)
                                                                                                                          tatCGCTATGGCAATAACGTTTCCCTTGCTTCAGCGCAGGAGGATTCCCGAGGATCACCAGCAACCGCCAACGTAACGGGATCTCGCCGTGAGATATCGCGCCAAGCAACGCGTCCAGCATCTCCACAGGTGCCGTCTCATTACCGTGTATTCCCGCTGAAATCACCAGTGCGCCTTGCGGTGGCGTTAATGGCGTCAGTTCCAGCACACCATCGCCCAGCCAGCGCCAGCGAACGCCGTTGATTTCTCGCTCGGTGATAAcc                                                                                                                                                                                  <  2:2334349/263‑1 (MQ=255)
                                                                                                                          tatCGCTATGGCAATAACGTTTCCCTTGCTTCAGCGCAGGAGGATTCCCGAGGATCACCAGCAACCGCCAACGTAACGGGATCTCGCCGTGAGATATCGCGCCAAGCAACGCGTCCAGCATCTCCACAGGTGCCGTCTCATTACCGTGTATTCCCGCTGAAATCACCAGTGCGCCTTGCGGTGGCGTTAATGGCGTCAGTTCCAGCACACCATCGCCCAGCCAGCGCCAGCGAACGCCGTTGATTTCTCGCTCGGTGATAAcc                                                                                                                                                                                  >  1:2334349/1‑263 (MQ=255)
                                                                                                                           atCGCTATGGCAATAACGTTTCCCTTGCTTCAGCGCAGGAGGATTCCCGAGGATCACCAGCAACCGCCAACGTAACGGGATCTCGCCGTGAGATATCGCGCCAAGCAACGCGTCCAGCATCTCCACAGGTGCCGTCTCATTACCGTGTATTCCCGCTGAAATCACCAGTGCGCCTTGCGGTGGCGTTAATGGCGTCAGTTCCAGCACACCATCGCCCAGCCAGCGCCAGCGAACGCCGTTGATTTCTCGCTCGGTGATAACCGGTTTTTTACCCGTTAAGGTCAGAGCa                                                                                                                                                       >  1:1920291/1‑289 (MQ=255)
                                                                                                                                   ggCAATAACGTTTCCCTTGCTTCAGCGCAGGAGGATTCCCGAGGATCACCAGCAACCGCCAACGTAACGGGATCTCGCCGTGAGATATCGCGCCAAGCAACGCGTCCAGCATCTCCACAGGTGCCGTCTCATTACCGTGTATTCCCGCTGAAATCACCAGTGCGCCTTGCGGTGGCGTTAATGGCGTCAGTTCCAGCACACCATCGCCCAGCCAGCGCCAGCGAACGCCGTTGATTTCTCGCTCGGTGATAACCGGTTTTTTACCCGTTAAGGTCAGAGCAAGAAAAtt                                                                                                                                               <  1:1799344/289‑1 (MQ=255)
                                                                                                                                       aTAACGTTTCCCTTGCTTCAGCGCAGGAGGATTCCCGAGGATCACCAGCAACCGCCAACGTAACGGGATCTCGCCGTGAGATATCGCGCCAAGCAACGCGTCCAGCATCTCCACAGGTGCCGTCTCATTACCGTGTATTCCCGCTGAAATCACCAGTGCGCCTTGCGGTGGCGTTAATGGCGTCAGTTCCAGCACACCATCGCCCAGCCAGCGCCAGCGAACGCCGTTGATTTCTCGCTCGGTGATAACCGGTTTTTTACCCGTTAAGGTCAGAGCAAGAAAATTATcc                                                                                                                                           >  2:1967934/1‑289 (MQ=255)
                                                                                                                                        tcaCGTTGCCCTGTCATCCGCGCAGGAGGATTCCCGAGGCTCACCAGCAACCCGCAACATAACGGGATCGCGCCTGGAGGTTTCGCGCCAAGCAACGGGGCCAGCAACCCCACAGGTGCCGTCTGATTAACGTGTGTTTCCGCTGCAAACACCAGTGCGCCCTGGGGTGGCGTTAATGGCGTCAGTTCCAGCACACCATCGCCCAGCCAGCGGCAGCGAACGCCGTTGATTTCTCGCTCGGTGATAACCGGTTTTTTACCCGTTAAGGTCAGAGCAAGAAAATTATCCa                                                                                                                                          <  2:2269985/287‑1 (MQ=255)
                                                                                                                                        tAACGTTTCCCTTGCTTCAGCGCAGGAGGATTCCCGAGGATCACCAGCAACCGCCAACGTAACGGGATCTCGCCGTGAGATATCGCGCCAAGCAACGCGTCCAGCATCTCCACAGGTGCCGTCTCATTACCGTGTATTCCCGCTGAAATCACCAGTGCGCCTTGCGGTGGCGTTAATGGCGTCAGTTCCAGCACACCATCGCCCAGCCAGCGCCAGCGaa                                                                                                                                                                                                               <  2:191000/220‑1 (MQ=255)
                                                                                                                                         aaCGTTTCCCTTGCTTCAGCGCAGGAGGATTCCCGAGGATCACCAGCAACCGCCAACGTAACGGGATCTCGCCGTGAGATATCGCGCCAAGCAACGCGTCCAGCATCTCCACAGGTGCCGTCTCATTACCGTGTATTCCCGCTGAAATCACCAGTGCGCCTTGCGGTGGCGTTAATGGCGTCAGTTCCAGCACACCATCGCCCAGCCAGCGCCAGCGAACGCCGTTGATTTCTCGCTCGGTGATAACCGGTTTTTTACCCGTTAAGGTCAGAGCAAGAAAATTATCCAt                                                                                                                                         <  1:1323679/289‑1 (MQ=255)
                                                                                                                                              ttCCCTTGCTTCAGCGCAGGAGGATTCCCGAGGATCACCAGCAACCGCCAACGTAACGGGATCTCGCCGTGGGATATCGCGCCAAGCAACGCGTCCAGCATCTCCACAGGTGCCGTCTCATTACCGTGTATTCCCGCTGAAATCACCAGTGCGCCTTGCGGTGGCGTTAATGGCGTCAGTTCCAGCACACCATCGCCCAGCCAGCGCCAGCGAACGCCGTTGATTTCTCGCTCGGTGATAACCGGTTTTTTACCCGTTAAGGTCAGAGCaa                                                                                                                                                      <  2:546380/271‑1 (MQ=255)
                                                                                                                                              ttCCCTTGCTTCAGCGCAGGAGGATTCCCGAGGATCACCAGCAACCGCCAACGTAACGGGATCTCGCCGTGAGATATCGCGCCAAGCAACGCGTCCAGCATCTCCACAGGTGCCGTCTCATTACCGTGTATTCCCGCTGAAATCACCAGTGCGCCTTGCGGTGGCGTTAATGGCGTc                                                                                                                                                                                                                                                    >  1:1605818/1‑177 (MQ=255)
                                                                                                                                              ttCCCTTGCTTCAGCGCAGGAGGATCCACGAGGATAACCAGCAACCGCCAACGTAACGGGATCTCGCCGTGAGATATCGCGCCAAGCAACGCGTCCAGCATCTCCACAGGTGCCGTCTCATTACCGTGTATTCCCGCTGAAATCACCAGTGCGCCTTGCGGTGGCGTTAATGGCGTCAGTTCCAGCACACCATCGCCCAGCCAGCGCCAGCGAACGCCGTTGATTTCTCGCTCGGTGATAACCGGTTTTTTACCCGTTAAGGTCAGAGCAAGAAAATTATCCATTGcc                                                                                                                                     <  1:2450073/288‑1 (MQ=255)
                                                                                                                                               tCCCTTGCTTCAGCGCAGGAGGATTCCCGAGGATCACCAGCAACCGCCAACGTAACGGGATCTCGCCGTGAGATATCGCGCCAAGCAACGCGTCCAGCATCTCCACAGGTGCCGTCTCATTACCGTGTATTCCCGCTGAAATCACCAGt                                                                                                                                                                                                                                                                               >  2:800442/1‑149 (MQ=255)
                                                                                                                                                     actggaGCGCAGAATTATACCAGATGATCACCAGCACACGCACACGTAAACGGATATCGCATGGGTATATCGAGACAAGAAACGCGTCCAGCATCTCCACATGTGCCGTCTCATTAACGTGTATTACCGATGGAATCACCAGTGCGCCTTGCGGTGGAGTTAATGGCGTCAGTTCCAGCACACCATCGCCCAGCCGGCGCGAGGGAACGCCGTTGATTTCTCGCTGGGTGATAACCGGTCTTTTACCCGTTAAGGTCAGAGCAAGAACATTATCCATTGcccccgcgc                                                                                                                              <  2:2079860/283‑5 (MQ=255)
                                                                                                                                                          aGCGCAGGAGGATTCCCGAGGATCACCAGCAACCGCCAACGTAACGGGATCTCGCCGTGAGATATCGCGCCAAGCAACGCGTCCAGCATCTCCACAGGTGCCGTCTCATTACCGTGTATTCCCGCTGAAATCACCAGTGCGCCTTGCGGTGGCGTTAATGGCGTCAGTTCCAGCACACCATCGCCCAGCCAGCGCCAGCGAACGCCGTTGATTTCTCGCTCGGTGATAACCGGTTTTTTACCCGTTAAGGTCAGAGCAAGAAAATTATCCATTGCCccctccct                                                                                                                             >  2:683896/1‑284 (MQ=255)
                                                                                                                                                          aGCGCAGGAGGATTCCCGAGGATCACCAGCAACCGCCAACGTAACGGGATCTCGCCGTGAGATATCGCGCCAAGCAACGCGTCCAGCATCTCCACAGGTGCCGTCTCATTACCGTGTATTCCCGCTGAAATCACCAGTGCGCCTTGCGGTGGCGTTAATGGCGTCAGTTCCAGCACACCATCGCCCAGCCAGCGCCAGCGAACGCCGTTGATTTCTCGCTCGGTGATAACCGGTTTTTTACCCGTTAAGGTCAGAGCAAGAAAATTATCCATTGCCccctccct                                                                                                                             <  1:683896/284‑1 (MQ=255)
                                                                                                                                                                     aTTCCCGAGGATCACCAGCAACCGCCAACGTAACGGGATCTCGCCGTGAGATATCGCGCCAAGCAACGCGTCCAGCATCTCCACAGGTGCCGTCTCATTACCGTGTATTCCCGCTGAAATCACCAGTGCGCCTTGCGGTGGCGTTAATGGCGTCAGTTCCAGCACACCATCGCCCAGCCAGCGCCAGCGAACGCCGTTGATTTCTCGCTCGGTGATAACCGGTTTTTTACCCGTTAAGGTCAGAGCAAGAAAATTATCCATTGCCCCCTCCCTCGCGCTGGAACGGAt                                                                                                              <  1:1056877/288‑1 (MQ=255)
                                                                                                                                                                           gAGGATCACCAGCAACCGCCAACGTAACGGGATCTCGCCGTGAGATATCGCGCCAAGCAACGCGTCCAGCATCTCCACAGGTGCCGTCTCATTACCGTGTATTCCCGCTGAAATCACCAGTGCGCCTTGCGGTGGCGTTAATGGCGTCAGTTCCAGCACACCATCGCCCAGCCAGCGCCAGCGAACGCCGTTGATTTCTCGCTCGGTGATAACCGGTTTTTTACCCGTTAAGGTCAGAGCaa                                                                                                                                                      <  1:489719/242‑1 (MQ=255)
                                                                                                                                                                            aGGATCACCAGCAACCGCCAACGTAACGGGATCTCGCCGTGAGATATCGCGCCAAGCAACGCGTCCAGCATCTCCACAGGTGCCGTCTCATTACCGTGTATTCCCGCTGAAATCACCAGTGCGCCTTGCGGTGGCGTTAATGGCGTCAGTTCCAGCACACCATCGCCCAGCCAGCGCCAGCGAACGCCGTTGATTTCTCGCTCGGTGATAACCGGTTTTTTACCCGTTAAGGCCAGAGCAAGAAAATTATCCATTGCCCCCTCCCTCCCGCTGGAACGGATAAAccga                                                                                                       >  1:533598/1‑285 (MQ=255)
                                                                                                                                                                                              cAACTTAACGGGATCTCGGCGTGTGATATCGCGCCAAGCAACGCGGCCAGCATCTCCACAGGTGCCGTCTCATTACCGTGTATTCCCGCTGAAATCACCAGTGCGCCTTGCGGTGGCGTTAATGGCGTCAGTTCCAGCACACCATCGCCCAGCCAGCGCCAGCGAACGCCGTTGATTTCTCGCTCGGTGATAACCGGTTTTTTACCCGTTAAGGTCAGAGCAAGAAAACTATCCATTGCCCCCTCCCTCGCGCTTGAACCGATAAACCGAACCGAGATTCAGTAATTgg                                                                                    <  1:2386885/289‑1 (MQ=255)
                                                                                                                                                                                              cAACGGAACGGGATCTGGCCGGGCGATATCGCGCCAAGCACCGCGTCCAGCATCTCCACAGGTGCCGTCTCATTACCGTGTATTCCCGCTGAAATCACCAGTGCGCCTTGCGGTGGCGTTAATGGCGTCAGTTCCAGCACACCATCGCCCAGCCAGCGCCAGCGAACGCCGTTGATTTCTCGCTCGGTGATAACCGGTTTTTTACCCGTTAAGGTCAGAGCAAGAAAATTATCCATTGCCCCCTCCCTCGCGCTGGAACGGATAAACCGAACCGAGATTCAGTAATTgg                                                                                    <  2:2499697/289‑1 (MQ=255)
                                                                                                                                                                                               aaCGTAACGGGATCTCGCCGTGAGATATCGCGCCAAGCAACGCGTCCAGCATCTCCACAGGTGCCGTCTCATTACCGTGTATTCCCGCTGAAATCACCAGTGCGCCTTGCGGTGGCGTTAATGGCGTCAGTTCCAGCACACCATCGCCCAGCCAGCGCCAGCGAACGCCGTTGATTTCTCGCTCGGTGATAACCGGTTTTTTACCCGTTAAGGTCAGAGCAAGAAAATTATCCATTGCCCCCTCCCTCGCGCTGGAACGGATAAACCGAACCGAGATTCAGTAATTGGc                                                                                   <  1:2728307/289‑1 (MQ=255)
                                                                                                                                                                                               aaCGTAACGGGATCTCGCCGTGAGATATCGCGCCAAGCAACGCGTCCAGCATCTCCACAGGTGCCGTCTCATTACCGTGTATTCCCGCTGAAATCACCAGTGCGCCTTGCGGTGGCGTTAATGGCGTCAGTTCCAGCACACCATCGCCCAGCCAGCGCCAGCGAACGCCGTTGATTTCTCGCTCGGTGATAACCGGTTTTTTACCCGTTAAGGTCAGAGCAAGAAAATTATCCATTGCCCCCTCCCTCGCGCTGGAACGGATAAACCGAACCGAGATTCAGTAATTGGc                                                                                   <  1:758677/289‑1 (MQ=255)
                                                                                                                                                                                                 cGTAACGGGATCTCGCCGTGAGATATCGCGCCAAGCAACGCGTCCAGCATCTCCACAGGTGCCGTCTCATTCCCGTGTATTCCCGCTGAAATCACCAGTGCGCCTTGCGGTGGCGTTAAGGGCGTCAGTTCCAGCACACCATCGCCCAGCCAGCGCCAGCGAACGCCGTTGATTTCTCGCTCGGTGATAACCGGTTTTTTACCCGTTAAGGTCAGAGCAAGAAAATTATCCATTGCCCCCTCCCTCGCGCTGGAACGGATAAACCGAACCGAGATTCAGTAATTGGCTc                                                                                 <  1:1133982/289‑1 (MQ=255)
                                                                                                                                                                                                    aaCGGGATCTCGCCGTGAGATATCGCGCCAAGCAACGCGTCCAGCATCTCCACAGGCGCCGTCTCATTACCGTGTATTCCCGCTGAAATCACCAGTGCGCCTTGCGGTGGCGTTAATGGCGTCAGTTCCAGCACACCATCGCCCAGCCAGCGCCAGCGAACGCCGTTGATTTCTCGCTCGGTGATAACCGGTTTTTTACCCGTTAAGGTCAGAGCAAGAAAATTATCCATTGCCCCCTCCCTCGCGCTGGAACGGATAAACCGAACCGAGATTCAGTAATTGGCTCAAt                                                                              <  1:1263702/289‑1 (MQ=255)
                                                                                                                                                                                                      cGGGATCTCGCCGTGAGATATCGCGCCAAGCAACGCGTCCAGCATCTCCACAGGTGCCGTCTCATTACCGTGTATTCCCGCTGAAATCACCAGTGCGCCTTGCGGTGGCGTTAATGGCGTCAGTTCCAGCACACCATCGCCCAGCCAGCGCCAGCGAACGCCGTTGATTTCTCGCTCGGTGATAACCGGTTTTTTACCCGTTAAGGTCAGAGCAAGAAAATTATCCATTGCCCCCTCCCTCGCGCTGGAACGGATAAACCGAACCgaga                                                                                                >  1:2355874/1‑269 (MQ=255)
                                                                                                                                                                                                       gggATCTCGCCGTGAGATATCGCGCCAAGCAACGCGTCCAGCATCTCCACAGGTGCCGTCTCATTACCGTGTATTCCCGCTGAAATCACCAGTGCGCCTTGCGGTGGCGTTAATGGCGTCAGTTCCAGCACACCATCGCCCAGCCAGCGCCAGCGAACGCCGTTGATTTCTCGCTCGGTGATAACCGGTTTTTTACCCGTTAAGGTCAGAGCAAGAAAATTATCCATTGCCCCCTCCCTCGCGCTGGAACGGATAAACCGAACCGAGATTCAGTAATTGGc                                                                                   >  1:1209584/1‑281 (MQ=255)
                                                                                                                                                                                                        ggATCTCGCCGTGAGATATCGCGCCAAGCAACGCGTCCAGCATCTCCACAGGTGCCGTCTCATTACCGTGTATTCCCGCTGAAATCACCAGTGCGCCTTGCGGTGGCGTTAATGGCGTCAGTTCCAGCACACCCTCGCCCAGCCAGCGCCAGCGAACGCCGTTGATTTCTCGCTCGGTGATAACCGGTTTTTTACCCGTTACGGTCAGAGCAAGAAAATTATCCATTGCCGCCTCCCCCGCGCTGGCACGGCTCAACCGAACCGAGATCAAGTAATTGGCCCAATACa                                                                           >  2:1133982/1‑288 (MQ=255)
                                                                                                                                                                                                             tcGCCGTGAGATATCGCGCCAAGCAACGCGTCCAGCATCTCCACAGGTGCCGTCTCATTACCGTGTATTCCCGCTGAAATCACCAGTGCGCCTTGCGGTGGCGTTAATGGCGTCAGTTCCAGCACACCATCGCCCAGCCAGCGCCAGCGAACGCCGTTGATTTCTCGCTCGGTGATAACCGGTTTTTTACCCGTTAAGGTCAGAGCAAGAAAATTATCCAtt                                                                                                                                        >  1:2250521/1‑222 (MQ=255)
                                                                                                                                                                                                                   tGAGATATCGCGCCAAGCAACGCGTCCAGCATCTCCACAGGTGCCGTCTCATTACCGTGTATTCCCGCTGAAATCACCAGTGCGCCTTGCGGTGGCGTTAATGGCGTCAGTTCCAGCACACCATCGCCCAGCCAGCGCCAGCGAACGCCGTTGATTTCTCGCTCGGTGATAACCGGTTTTTTACCCGTTAAGGTCAGAGCAAGAAAATTATCCATTGCCCCCTCCCTCGCGCTGGAACGGATAAACCGAACCGAGATTCAGTAATTGGCTCAATACATCCAGTGCTTc                                                                >  1:1521456/1‑288 (MQ=255)
                                                                                                                                                                                                                   tGAGATATCGCGCCAAGCAACGCGTCCAGCATCTCCACAGGTGCCGTCTCATTACCGTGTATTCCCGCTGAAATCACCAGTGCGCCTTGCGGTGGCGTTAATGGCGTCAGTTCCAGCACACCATCGCCCAGCCAGCGCCAGCGAACGCCGTTGATTTCTCGCTCGGTGATAACCGGTTTTTTACCCGTTAAGGTCAGAGCAAGAAAATTATCCATTGCCCCCTCCCTCGCGCTGGAACGGATAAACCGAACCGAGATTCAGTAATTGGCTCAATACATCCAGTGCTTc                                                                >  1:2014936/1‑288 (MQ=255)
                                                                                                                                                                                                                           cgcgCCAAGCAACGCGTCCAGCATCTCCACAGGTGCCGTCTCATTACCGTGTATTCCCGCTGAAATCACCAGTGCGCCTTGCGGTGGCGTTAATGGCGTCAGTTCCAGCACACCATCGCCCAGCCAGCGCCAGCGAACGCCGTTGATTTCTCGCTCGGTGATAACCGGTTTTTTACCCGTTAAGGTCAGAGCAAGAAAATTAt                                                                                                                                             >  2:1273239/1‑203 (MQ=255)
                                                                                                                                                                                                                             cgcCAAGCAACGCGTCCAGCATCTCCACAGGTGCCGTCTCATTACCGTGTATTCCCGCTGAAATCACCAGTGCGCCTTGCGGTGGCGTTAATGGCGTCAGTTCCAGCACACCATCGCCCAGCCAGCGCCAGCGAACGCCGTTGATTTCTCGCTCGGTGATAACCGGTTTTTTACCCGTTAAGGTCAGAGCAAGAAAATTATCCATTGCCCCCTCCCTCGCGCTGGAACGGATAAACCGAACCGAGATTCAGTAATTGGCTCaa                                                                               <  2:496113/263‑1 (MQ=255)
                                                                                                                                                                                                                             cgcCAAGCAACGCGTCCAGCATCTCCACAGGTGCCGTCTCATTACCGTGTATTCCCGCTGAAATCACCAGTGCGCCTTGCGGTGGCGTTAATGGCGTCAGTTCCAGCACACCATCGCCCAGCCAGCGCCAGCGAACGCCGTTGATTTCTCGCTCGGTGATAACCGGTTTTTTACCCGTTAAGGTCAGAGCAAGAAAATTATCCATTGCCCCCTCCCTCGCGCTGGAACGGATAAACCGAACCGAGATTCAGTAATTGGCTCAATACATCCAGTGCTTCCCGCCCTTcgc                                                     >  1:852165/1‑289 (MQ=255)
                                                                                                                                                                                                                                 caGCAACGCGTCCAGCAGCTCCACAGGTGCCGTCTCATTACCGTGTATTCGCGCTGAAATCACCAGTGCGCCGTGCGGTGGCGTTAATGGCGTCAGTTCCAGCACACCATCGCCCAGCCAGCGCCAGCGAACGCCGTTGATTTCTCGATCGGTGATAACCGGTTTTTTACCCGTTAAGGTCAGAGCAAGAAAATTATCCATTGCCCCCTCCCTCGCGCTGGAACGGATAAACCGAACCGAGATTCAGTAATTGGCTCAATACATCCAGTGCTTCCCGCCCTTCGCgcag                                                 <  1:1042767/288‑1 (MQ=255)
                                                                                                                                                                                                                                  aGCAACGCGTCCAGCATCTCCACAGGTGCCGTCTCATTACCGTGTATTCCCGCTGAAATCACCAGTGCGCCTTGCGGTGGCGTTAATGGCGTCAGTTCCAGCACACCATCGCCCAGCCAGCGCCAGCGAACGCCGTTGATTTCTCGCTCGGTGATAACCGGTTTTTTACCCGTTAAGGTCAGAGCAAGAAAATTATCCATTGCCCCCTCCCTCgcgc                                                                                                                        >  1:16775/1‑217 (MQ=255)
                                                                                                                                                                                                                                  aGCAACGCGTCCAGCATCTCCACAGGTGCCGTCTCATTACCGTGTATTCCCGCTGAAATCACCAGTGCGCCTTGCGGTGGCGTTAATGGCGTCAGTTCCAGCACACCATCGCCCAGCCAGCGCCAGCGAACGCCGTTGATTTCTCGCTCGGTGATAACCGGTTTTTTACCCGTTAAGGTCAGAGCAAGAAAATTATCCATTGCCCCCTCCCTCgcgc                                                                                                                        <  2:16775/217‑1 (MQ=255)
                                                                                                                                                                                                                                  aGCAACGCGTCCAGCATCTCCACAGGTGCCGTCTCATTACCGTGTATTCCCGCTGAAATCACCAGTGCGCCTTGCGGTGGCGTTAATGGCGTCAGTTCCAGCACACCATCGCCCAGCCAGCGCCAGCGAACGCCGTTGATTTCTCGCTCGGTGATAACCGGTTTTTTACCCGTTAAGGTCAGAGCAAGAAAATTATCCATTGCCCCCTCCCTCGCGCTGGAACGGATAAACCGAACCGAGATTCAGTAATTGGCTCAATACATCCAGTGCTTCCCGCCCTTCGCgcagc                                                <  1:1869714/289‑1 (MQ=255)
                                                                                                                                                                                                                                        gcgTCCAGCATCTCCACAGGTGCCGTCTCATTACCGTGTATTCCCGCTGAAATCACCAGTGCGCCTTGCGGTGGCGTTAATGGCGTCAGTTCCAGCACACCATCGCCCAGCCAGCGCCAGCGAACGCCGTTGATTTCTCGCTCGGTGATAACCGGTTTTTTACCCGTTAAGGTCAGAGCAAGAAAATTATCCATTGCCCCCTCCCTCGCGCTGGAACGGATAAACCGAACCGAGATTCAGTAATTGGCTCAATACATCCAGTGCTTCCCGCCCTTCGCGCAGCAATTGc                                          >  1:591414/1‑289 (MQ=255)
                                                                                                                                                                                                                                           tCCAGCATCTCCACAGGTGCCGTCTCATTACCGTGTATTCCCGCTGAAATCACCAGTGCGCCTTGCGGTGGCGTTAATGGCGTCAGTTCCAGCACACCATCGCCCAGCCAGCGCCAGCGAACGCCGtt                                                                                                                                                                                                        >  2:1601743/1‑128 (MQ=255)
                                                                                                                                                                                                                                            ccAGCATCTCCACAGGTGCCGTCTCATTACCGTGTATTCCCGCTGAAATCACCAGTGCGCCTTGCGGTGGCGTTAATGGCGTCAGTTCCAGCACACCATCGCCCAGCCAGCGCCAGCGAACGCCGTTGATTTCTCGCTCGGTGATAACCGGTTTTTTACCCGTTAAGGTCAGAGCAAGAAAATTATCCATTGCCCCCTCCCTCGCGCTGGAACGGATAAACCGAACCGAGATTCAGTAATTGGCTCAATACATCCAGTGCTTCCCGCCCTTCGCGCAGCAATTGCggg                                       <  1:1763931/288‑1 (MQ=255)
                                                                                                                                                                                                                                            ccAGCATCTCCACAGGTGCCGTCTCATTACCGTGTATTCCCGCTGAAATCACCAGTGCGCCTTGCGGTGGCGTTAATGGCGTCAGTTCCAGCACACCATCGCCCAGCCAGCGCCAGCGAACGCCGTTGATTTCTCGCTCGGTGATAACCGGTTTTTTACCCGTTAAGGTCAGAGCAAGAAAATTATCCATTGCCCCCTCCCCCGCGCTGGAACGGATAAACCCAACCGCTATTCAGTAATTGGCTCATTCACTCCCGGTCTTCCTGACCTTCGCCAAGCAATTGCggg                                       >  2:1943369/1‑288 (MQ=255)
                                                                                                                                                                                                                                                   ctcCACAGGTGCCGTCTCATTACCGTGTATTCCCGCTGAAATCACCAGTGCGCCTTGCGGTGGCGTTAATGGCGTCAGTTCCAGCACACCATCGCCCAGCCAGCGCCAGCGAACGCCGTTGATTTCCCGCTCGGTGATAACCGGTTTTTTACCCGTTAAGGTCAGAGCAAGAAAATTATCCATTGCCCCCTCCCCCGCGCTGGAACGGATAAACCGAACCGACATACATTAATTGGCTCAATACATCCAGTACTTCCCGCCCTTCGCCCCTCAATTGTGGGTCGGACAg                               >  2:1477020/1‑289 (MQ=255)
                                                                                                                                                                                                                                                    tcCACAGGTGCCGTCTCATTACCGTGTATTCCCGCTGAAATCACCAGTGCGCCTTGCGGTGGCGTTAATGGCGTCAGTTCCAGCACACCATCGCCCAGCCAGCGCCAGCGAACGCCGTTGATTTCTCGCTCGGTGATAACCGGTTTTTTACCCGTTAAGGTCAGAGCAAGAAAATTATCCATTGCCCCCTCCCTCGCGCTGGAACGGATAAACCGAACCGAGATTCAGTAATTGGc                                                                                   <  1:327594/236‑1 (MQ=255)
                                                                                                                                                                                                                                                     ccACAGGTGCCGTCTCATTACCGTGTATTCCCGCTGAAATCACCAGTGCGCCTTGCGGTGGCGTTAATGGCGTCAGTTCCAGCACACCATCGCCCAGCCAGCGCCAGCGAACGCCGTTGATTTCTCGCTCGGTGATAACCGGTTTTTTACCCGTTAAGGTCAGAGCAAGAAAATTATCCATTGCCCCCTCCCTCGCGCTGGAACGGATAAACCGAACCGAGATTCAGTAATTGGCTc                                                                                 <  1:2079119/237‑1 (MQ=255)
                                                                                                                                                                                                                                                        ccggTGCCGTCTCATTACCGTGTATTCCCGATGACATCACCAGTGCGCCTTGCGGTGGCGTTAATGGCGTCAGTTCCAGCACACCATCGCCCAGCCAGCGCCAGCGAACGCCGTTGATTTCTCGCTCGGTGATAACCGGTTTTTTACCCGTTAAGGTCAGAGCAAGAAAATTATCCATTGCCCCCTCCCTCGCGCTGGAACGGATAAACCGAACCGAGATTCAGTAATTGGCTCAATACATCCAGTGCTTCCCGCCCTTCGCGCAGCAATTGCGGGTCGGCCAGATCgg                          <  2:271365/287‑1 (MQ=255)
                                                                                                                                                                                                                                                        caGGTGCCGTCTCATTACCGTGTATTCCCGCTGAAATCACCAGTGCGCCTTGCGGTGGCGTTAATGGCGTCAGTTCCAGCACACCATCGCCCAGCCAGCGCCAGCGAACGCCGTTGATTTCTCGCTCGGTGATAACCg                                                                                                                                                                                 <  2:830485/138‑1 (MQ=255)
                                                                                                                                                                                                                                                         gggTGCCGTCGCATTACCGTGTGTGCCCGCTGAAATCACCAGTGCGCCTTGCGGTGGCGTTAATGGCGTCAGTTCCAGCACGCCATCGCCCAGCCAGCGCCAGCGAACGCCGTTGATTTCTCGCTCGGTGATAACCGGTTTTTTACCCGTTAAGGTCAGAGCAAGAAAATTATCCATTGCCCCCTCCCTCGCGCTGGAACGGATAAACCGAACCGAGATTCAGTAATTGGCTCAATACATCCAGTGCTTCCCGCCCTTCGCGCAGCAATTGCGGGTCGGCCAGATCgg                          <  2:2466370/287‑1 (MQ=255)
                                                                                                                                                                                                                                                           gTGCCGTCTCATTACCGTGTATTCCCGCTGAAATCACCAGTGCGCCTTGCGGTGGCGTTAATGGCGTCAGTTCCAGCACACCATCGCCCAGCCAGCGCCAGCGAACGCCGTTGATTTCTCGCTCGGTGATAACCGGTTTTTTACCCGTTAAGGTCAGAGCAAGAAAATTATCCATTGCCCCCTCCCCCGCGCTTGAACGGATAAACCGAACCGAGATTCAGTAATTGGCTCAATACATCCAGTGCTTCCCGCCCTTCGCCCAGCAACTGCGGGTCGGCCAGATCGgca                        >  2:1358091/1‑288 (MQ=255)
                                                                                                                                                                                                                                                              ccGTCTCATTACCGTGTATTCCCGCTGAAATCACCAGTGCGCCTTGCGGTGGCGTTAATGGCGTCAGTTCCAGCACACCATCGCCCAGCCAGCGCCAGCGAACGCCGTTGATTTCTCGCTCGGTGATAACCGGTTTTTTACCCGTTAAGGTCAGAGCAAGAAAATTATCCATTGCCCCCTCCCTCGCGCTGGAACGGATAAACCGAACCGAGATTCAGTAATTgg                                                                                    <  1:2180561/225‑1 (MQ=255)
                                                                                                                                                                                                                                                              ccGTCTCATTACCGTGTATTCCCGCTGAAATCACCAGTGCGCCTTGCGGTGGCGTTAATGGCGTCAGTTCCAGCACACCATCGCCCAGCCAGCGCCAGCGAACGCCGTTGATTTCTCGCTCGGTGATAACCGGTTTTTTACCCGTTAAGGTCAGAGCAAGAAAATTATCCATTGCCCCCTCCCTCGCGCTGGAACGGATAAACCGAACCGAGATTCAGTAATTGGCTCAATACATCCAGTGCTTCCCGACCTTCGCGCCGCAATTGCGGGTCGGCCCGATCGgcagca                     >  2:1764609/1‑288 (MQ=255)
                                                                                                                                                                                                                                                                gTCTCATTACCGTGTATTCCCGCTGAAATCACCAGTGCGCCTTGCGGTGGCGTTAATGGCGTCAGTTCCAGCACACCATCGCCCAGCCAGCGCCAGCGAACGCCGTTGATTTCTCGCTCGGTGATAACCGGTTTTTTACCCGTTAAGGTCAGAGCAAGAAAATTATCCATTGcccc                                                                                                                                   >  2:1444390/1‑176 (MQ=255)
                                                                                                                                                                                                                                                                gTCTCATTACCGTGTATTCCCGCTGAAATCACCAGTGCGCCTTGCGGTGGCGTTAATGGCGTCAGTTCCAGCACACCATCGCCCAGCCAGCGCCAGCGAACGCCGTTGATTTCTCGCTCGGTGATAACCGGTTTTTTACCCGTTAAGGTCAGAGCAAGAAAATTATCCATTGcccc                                                                                                                                   <  1:1444390/176‑1 (MQ=255)
                                                                                                                                                                                                                                                                gTCTCATTACCGTGTATTCCCGCTGAAATCACCAGTGCGCCTTGCGGTGGCGTTAATGGCGTCAGTTCCAGCACACCATCGCCCAGCCAGCGCCAGCGAACGCCGTTGATTTCTCGCTCGGTGATAACCGGTTTTTTACCCGTTAAGGTCAGAGCAAGAAAATTATCCATTGCCCCCTCCCTCGCGCTGGAACGGATAAAccgaac                                                                                                     >  2:2151530/1‑201 (MQ=255)
                                                                                                                                                                                                                                                                gTCTCATTACCGTGTATTCCCGCTGAAATCACCAGTGCGCCTTGCGGTGGCGTTAATGGCGTCAGTTCCAGCACACCATCGCCCAGCCAGCGCCAGCGAACGCCGTTGATTTCTCGCTCGGTGATAACCGGTTTTTTACCCGTTAAGGTCAGAGCAAGAAAATTATCCATTGCCCCCTCCCTCGCGCTGGAACGGATAAACCGAACCGAGATTCAGTAATTGGc                                                                                   <  1:2471540/224‑1 (MQ=255)
                                                                                                                                                                                                                                                                gTCTCATTACCGTGTATTCCCGCTGAAATCACCAGTGCGCCTTGCGGTGGCGTTAATGGCGTCAGTTCCAGCACACCATCGCCCAGCCAGCGCCAGCGAACGCCGTTGATTTCTCGCTCGGTGATAACCGGTTTTTTACCCGTTAAGGTCAGAGCAAGAAAATTATCCATTGCCCCCTCCCTCGCGCTGGAACGGATAAACCGAACCGAGATTCAGTAATTGGCTCAATACATCCAGTGCTTCCCGCCCTTCGCGCAGCAATTGCGGGTCGGCCAGATCGGCAGCAGTa                  >  1:564529/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                 tctcATTACCGTGTATTCCCGCTGAAATCACCAGTGCGCCTTGCGGTGGCGTTAATGGCGTCAGTTCCAGCACACCATCGCCCAGCCAGCGCCAGCGAACGCCGTTGATTTCTCGCTCGGTGATAACCGGTTTTTTACCCGTTAAGGTCAGAGCAAGAAAATTATCCATTGCCCCCTCCCTCGCGCTGGAACGGATAAACCGAACCGAGATTCAGTAAt                                                                                       <  2:1752493/219‑1 (MQ=255)
                                                                                                                                                                                                                                                                       tACCGTGTATTCCCGCTGAAATCACCAGTGCGCCTTGCGGTGGCGTTAATGGCGTCAGTTCCAGCACACCATCGCCCAGCCAGCGCCAGCGAACGCCGTTGATTTCTCGCTCGGTGATAACCGGTTTTTTACCCGTTAAGGTCAGAGCAAGAAAATTATCCATTGCCCCCTCCCTCGCGCTGGAACGGATAAACCGAACCGAGATTCAGTAATTGGCTCAATACATCCAGTGCTTCCCGCCCTTCGCGCAGCAATTGCGGGTCGGCCAGATCGGCAGCAGTAAGGCGAt           <  1:1967934/289‑1 (MQ=255)
                                                                                                                                                                                                                                                                            tgtATTCCCGCTGAAATCACCAGTGCGCCTTGCGGTGGCGTTAATg                                                                                                                                                                                                                                                         <  1:1399576/46‑1 (MQ=255)
                                                                                                                                                                                                                                                                            tgtATTCCCGCTGAAATCACCAGTGCGCCTTGCGGTGGCGTTAATGGCGTCAGTTCCAGCACACCATCGCCCAGCCAGCGCCAGCGAACGCCGTTGATTTCTCGCTCGGTGATAACCGGTTTTTTACCCGTTAAGGTCAGAGCaa                                                                                                                                                      >  2:1094657/1‑145 (MQ=255)
                                                                                                                                                                                                                                                                            tgtATTCCCGCTGAAATCACCAGTGCGCCTTGCGGTGGCGTTAATGGCGTCAGTTCCAGCACACCATCGCCCAGCCAGCGCCAGCGAACGCCGTTGATTTCTCGCTCGGTGATAACCGGTTTTTTACCCGTTAAGGTCAGAGCaa                                                                                                                                                      <  1:1094657/145‑1 (MQ=255)
                                                                                                                                                                                                                                                                            tgtATTCCCGCTGAAATCACCAGTGCGCCTTGCGGTGGCGTTAATGGCGTCAGTTCCAGCACACCATCGCCCAGCCAGCGCCAGCGAACGCCGTTGATTTCTCGCTCGGTGATAACCGGTTTTTTACCCGTTAAGGTCAGAGCAAGAAAATTATCCATTGCCCCCTCCCTCGCGCTGGAACGGATAAAccgaa                                                                                                      <  2:600308/193‑5 (MQ=255)
                                                                                                                                                                                                                                                                            tgtATTCCCGCTGAAATCACCAGTGCGCCTTGCGGTGGCGTTAATGGCGTCAGTTCCAGCACACCATCGCCCAGCCAGCGCCAGCGAACGCCGTTGATTTCTCGCTCGGTGATAACCGGTTTTTTACCCGTTAAGGTCAGAGCAAGAAAATTATCCATTGCCCCCTCCCTCGCGCTGGAACGGATAAACCGAACCGAGATTCAGTAATTGGc                                                                                   >  2:123368/1‑212 (MQ=255)
                                                                                                                                                                                                                                                                            tgtATTCCCGCTGAAATCACCAGTGCGCCTTGCGGTGGCGTTAATGGCGTCAGTTCCAGCACACCATCGCCCAGCCAGCGCCAGCGAACGCCGTTGATTTCTCGCTCGGTGATAACCGGTTTTTTACCCGTTAAGGTCAGAGCAAGAAAATTATCCATTGCCCCCTCCCTCGCGCTGGAACGGATAAACCGAACCGAGATTCAGTAATTGGc                                                                                   <  1:123368/212‑1 (MQ=255)
                                                                                                                                                                                                                                                                            tgtATTCCCGCTGAAATCACCAGTGCGCCTTGCGGTGGCGTTAATGGCGTCAGTTCCAGCACACCATCGCCCAGCCAGCGCCAGCGAACGCCGTTGATTTCTCGCTCGGTGATAACCGGTTTTTTACCCGTTAAGGTCAGAGCAAGAAAATTATCCATTGCCCCCTCCCTCGCGCTGGAACGGATAAACCGAACCGAGATTCAGTAATTGGCTCAATACATCCAGTGCTTCCCGCCCTTCGCGCAGCAATTGCGGGTCGGCCAGATCGGCAGCAGTAAGGCGATCGCgg      >  2:224171/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                            tgtATTCCCGCTGAAATCACCAGTGCGCCTTGCGGTGGCGTTAATGGCGTCAGTTCCAGCACACCATCGCCCAGCCAGCGCCAGCGAACGCCGTTGATTTCTCGCTCGGTGATAACCGGTTTTTTACCCGTTAAGGTCAGAGCAAGAAAATTATCCATTGCCCCCTCCCTCGCGCTGGAACGGATAAACCGAACCGAGATTCAGTAATTGGCTCAATACATCCAGTGCTTCCCGCCCTTCGCGCAGCAATTGCGGGTCGGCCAGATCGGCAGCAGTAAGGCGATCGCgg      >  1:642958/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                              tATTCCCGCTGAAATCACCAGTGCGCCTTGCGGTGGCGTTAATGGCGTCAGTTCCAGCACACCATCGCCCAGCCAGCGCCAGCGAACGCCGTTGATTTCTCGCTCGGTGATAACCGGTTTTTTACCCGTTAAGGTCAGAGCAAGAAAATTATCCATTGCCCCCTCCCTCGCGCTGGAACGGATAAACCGAACCGAGATTCAGTAATTGGCTCAATACATCCAGTGCTTCCCGCCCTTCGCGCAGCAATTGCGGGTCGGCCAGATCGGCAGCAGTAAGGCGATCGCGgta    >  1:912129/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                               aTTCCCGCTGAAATCACCAGTGCGCCTTGCGGTGGCGTTAATGGCGTCAGTTCCAGCACACCATCGCCCAGCCAGCGCCAGCGAACGCCGTTGATTTCTCGCTCGGTGATAACCGGTTTTTTACCCGtt                                                                                                                                                                   <  2:1866384/129‑1 (MQ=255)
                                                                                                                                                                                                                                                                                       |||                                                                                                                                                                                                                                                                                       
CAGCGCACAGATTCTTTGCCCTGGTCATAAAAATCTTCCAGGCACTGTTCCAGTTCGCGCGCCCGACAGGTTTCTCCGCTTTCAGCAAATAGCTGCCAACGACCGCCAAACATT‑CGATTCATATCGCTATGGCAATAACGTTTCCCTTGCTTCAGCGCAGGAGGATTCCCGAGGATCACCAGCAACCGCCAACGTAACGGGATCTCGCCGTGAGATATCGCGCCAAGCAACGCGTCCAGCATCTCCACAGGTGCCGTCTCATTACCGTGTATTCCCGCACTAATCACCAGTGCGCCTTGCGGTGGCGTTAATGGCGTCAGTTCCAGCACACCATCGCCCAGCCAGCGCCAGCGAACGCCGTTGATTTCTCGCTCGGTGATAACCGGTTTTTTACCCGTTAAGGTCAGAGCAAGAAAATTATCCATTGCCCCCTCCCTCGCGCTGGAACGGATAAACGCTACCGAGATTCAGTAATTGGCTCAATACATCCAGTGCTTCCCGCCCTTCGCGCAGCAATTGCGGGTCGGCCAGATCGGCAGCAGTAAGGCGATCGCGGTAGT  >  CP042583/1508491‑1509050

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A