Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A6 F210 I1 R1 4928 340.1 5480506 96.9% 5310610 252.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA CP042583 1,527,523 3 bp→CGA intergenic (–/–) – / – –/–

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0425831,527,5230GC100.0% 774.0 / NA 322intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base C (182/140);  total (182/140)
*CP0425831,527,5240CG99.4% 757.2 / NA 322intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base C (2/0);  new base G (179/140);  total (182/140)
Fisher's exact test for biased strand distribution p-value = 5.07e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*CP0425831,527,5250TA99.7% 767.0 / NA 322intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base T (0/0);  major base A (182/139);  minor base G (0/1);  total (182/140)
Fisher's exact test for biased strand distribution p-value = 4.35e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 322 total aligned reads displayed.

AAGTCCTGATAGCGACACTGCTTTTCGCTGATTTGCGTCAGCACGCTTTCCCAGTGCGCGGTCATGTCCGGTCGCGTCGCCATCTCCGGCAGGCTATGGAATAGCGCTTTTCCGGCGTCGGTGGAGTGGATATAGCGCCCTTTTTTGGTCAGGAAACCACGCTTGAACAACAGTTCAATAATCCCGGCACGCGTTGCCTCTGTCCCCAGACCATCGGTCGCACGGAGGATCTTTTTCAGATCTTTATCCTGCACAAAGCGCGCGATCCCGGTCATCGCGCTAAGCAGTGTTGCATCGGTAAAATGGCGCGGCGGCTGGGTTTGCCGCTCTACCACTTCACCTTTTTCACACAGCAACTCATCGCCTTTCGCCACCACAGGCAGTGGCGTGCCGTCGTTTTCTTCATCGCGCTCTTTGCTGCCTAACAGCGTGCGCCAGCCTGCTTCAGCAAGAAAACGCGCTTTAGCGACAAATTTGCCTTTGGCAATGTCCAGTTCGATAACACACTTGCGGAACACCGCATCCGGGCAGAATTGCATCAGATACTGACGGGCAATCAG  >  CP042583/1527245‑1527804
                                                                                                                                                                                                                                                                                      |||                                                                                                                                                                                                                                                                                       
      tGATAGCGACACTGCTTTTCGCTGATTTGCGTCAGCACCGATTCCCAGTGCGCGGTCATGTCCGGTCGCGTCGCCATCTCCGGCAGCGAATGGAATAGCGCTTTTCCGGCGTCGGTGGAGTGGATATAGCGCCCTTTTTTGGTCAGGAAACCACGCTTGAACAACAGTTCAATAATCCCGGCACGCGTTGCCTCTGTCCCCAGACCATCGGTCGCACGGAGGATCTTTTTCAGATCTTTATCCTGCACTAAGCGCGCGATCCCGGTCATCGCCGAAAGCAGTGTTGCa                                                                                                                                                                                                                                                                            >  1:111030/1‑288 (MQ=255)
                         cGCTGATTTGCGTCAGCACCGATTCCCAGTGCGCGGTCATGTCCGGTCGCGTCGCCATCTCCGGCAGCGAATGGAATAGCGCTTTTCCGGCGTCGGTGGAGTGGATATAGCGCCCTTTTTTGGTCAGGAAACCACGCTTGAACAACAGTTCAATAATCCCGGCACGCGTTGCCTCTGTCCCCAGACCATCGGTCGCACGGAGGATCTTTTTCAGATCTTTATCCTGCACAAAGCGCGCGATCCGCGTCATCCCCGAACGCAGTGTTGCATCGGTAAAATGGCgcggcc                                                                                                                                                                                                                                                         >  2:2717395/1‑287 (MQ=255)
                         cGCTGATTTGCGTCAGCACCGATTCCCAGTGCGCGGTCATGTCCGGTCGCGTCGCCATCTCCGGCAGCGAATGGAATAGCGCTTTTCCGGCGTCGGTGGAGTGGATATAGCGCCCTTTTTTGGTCAGGAAACCACGCTTGAACAACAGTTCAATAATCCCGGCACGCGTTGCCTCTGTCCCCAGACCATCGGTCGCACGGAGGATCTTTTTCAGATCTTTATCCTGCACAAAGCGCGCGATCCCGGTCATCGCCGAAAGCAgtgt                                                                                                                                                                                                                                                                                <  1:1413578/265‑1 (MQ=255)
                                        gcaccgattCCCAGTGCGCGGTCATGTCCGGTCGCGTCGCCATCTCCGGCAGCGAATGGAATAGCGCTTTTCCGGCGTCGGTGGAGTGGATATAGCGCCCTTTTTTGGTCAGGAAACCACGCTTGAACAACAGTTCAATAATCCCGGCACGCGTTGCCTCTGTCCCCAGACCATCGGTCGCACGGAGGATCTTTTTCAGATCTTTATCCTGCACAAAGCGCGCGATCCCGGTCATCGCCGAAAGCAGTGTTGCATCGGTAAAATGGCGCGGCGGCTGGGTTTGCCGc                                                                                                                                                                                                                                           >  1:2413860/8‑287 (MQ=255)
                                        gcaccgattCCCAGTGCGCGGTCATGTCCGGTCGCGTCGCCATCTCCGGCAGCGAATGGAATAGCGCTTTTCCGGCGTCGGTGGAGTGGATATAGCGCCCTTTTTTGGTCAGGAAACCACGCTTGAACAACAGTTCAATAATCCCGGCACGCGTTGCCTCTGTCCCCAGACCATCGGTCGCACGGAGGATCTTTTTCAGATCTTTATCCTGCACAAAGCGCGCGATCCCGGTCATCGCCGAAAGCAGTGTTGCATCGGTAAAATGGCGCGGCGGCTGGGTTTGCCGc                                                                                                                                                                                                                                           >  1:1700753/8‑287 (MQ=255)
                                        gcaccgattCCCAGTGCGCGGTCATGTCCGGTCGCGTCGCCATCTCCGGCAGCGAATGGAATAGCGCTTTTCCGGCGTCGGTGGAGTGGATATAGCGCCCTTTTTTGGTCAGGAAACCACGCTTGAACAACAGTTCAATAATCCCGGCACGCGTTGCCTCTGTCCCCAGACCATCGGTCGCACGGAGGATCTTTTTCAGATCTTTATCCTGCACAAAGCGCGCGATCCCGGTCATCGCCGAAAGCAGTGTTGCATCGGTAAAATGGCGCGGCGGCGGGGGTTGCCGcc                                                                                                                                                                                                                                          >  2:577667/8‑287 (MQ=255)
                                                         gcgGTCATGTCCGGTCGCGTCGCCATCTCCGGCAGCGAATGGAATAGCGCTTTTCCGGCGTCGGTGGAGTGGATATAGCGCCCTTTTTTGGTCAGGAAACCACGCTTGAACAACAGTTCAATAATCCCGGCACGCGTTGCCTCTGTCCCCAGACCATCGGTCGCACGGAGGATCTTTTTCAGATCTTTATCCTGCACAAAGCGCGCGATCCCGGTCATCGCCGAAAGCAGTGTTGCATCGGTAAAATGGCGCGGCGGCTGGGTTTGCCGCTCTACCACTTCACCttttt                                                                                                                                                                                                                        <  2:2413860/289‑1 (MQ=255)
                                                                tGTCCGGTCGCGTCGCCATCTCCGGCAGCGAATGGAATAGCGCTTTTCCGGCGTCGGTGGAGTGGATATAGCGCCCTTTTTTGGTCAGGAAACCACGCTTGAACAACAGTTCAATAATCCCGGCACGCGTTGCCTCTGTCCCCAGACCATCGGTCGCACGGAGGATCTTTTTCAGATCTTTATCCTGCACAAAGCGCGCGATCCCGGTCATCGCCGAAAGCAGTGTTGCATCGGTAAAATGGCGCGGCGGCTGGGTTGGCCGCTCTACCACTTCACCTTTTTcacaca                                                                                                                                                                                                                  >  1:1327171/1‑288 (MQ=255)
                                                                       tcgcgtcgcCATCTCCGGCAGCGAATGGAATAGCGCTTTTCCGGCGTCGGTGGAGTGGATATAGCGCCCTTTTTTGGTCAGGCAACCACGCTTGAACAACAGTTCAATAATCCCGGCACGCGTTGCCTCTGTCCCCAGACCATCGGTCGCACGGAGGATCTTTTTCAGATCTTTATCCTTCACAAAGCGCGCGATCCCGGTCATCGCCGACAGCAGTCTTGCATCCGTAAACTGGCCCGGCGGCCGGGTTTGCCCCTCTACCACTTCACCTTTTTCACCCCGCCACt                                                                                                                                                                                                            >  2:2681969/1‑287 (MQ=255)
                                                                       tcgcgtcgcCATCTCCGGCAGCGAATGGAATAGCGCTTTTCCGGCGTCGGTGGAGTGGATATAGCGCCCTTTTTTGGTCAGGAAACCACGCTTGAACAACAGTTCAATAATCCCGGCACGCGTTGCCTCTGTCCCCAGACCATCGGTCGCACGGAGGATCTTTTTCAGATCTTTATCCTGCACAAAGCGCGCGATCCCGGTCATCGCCGAAAGCAGTGTTGCATCGGTAAAATGGCGCGGCGGCTGGGTTTGc                                                                                                                                                                                                                                              <  1:2046592/253‑1 (MQ=255)
                                                                       tcgcgtcgcCATCTCCGGCAGCGAATGGAATAGCGCTTTTCCGGCGTCGGTGGAGTGGATATAGCGCCCTTTTTTGGTCAGGAAACCACGCTTGAACAACAGTTCAATAATCCCGGCACGCGTTGCCTCTGTCCCCAGACCATCGGTCGCACGGAGGATCTTTTTCAGATCTTTATCCTGCACAAAGCGCGCGATCCCGGTCATCGCCGAAAGCAGTGTTGCATCGGTAAAATGGCGCGGCGGCTGGGTTTGCCGCTCTACCACTTCACCTTTTTCACACAGCAACTCa                                                                                                                                                                                                          >  1:2103570/1‑289 (MQ=255)
                                                                       tcgcgtcgcCATCTCCGGCAGCGAATGGAATAGCGCTTTTCCGGCGTCGGTGGAGTGGATATAGCGCCCTTTTTTGGTCAGGAAACCACGCTAGAACAACAGTTCAATAATCCCGGCACGCGTTGCCTCTGTCCCCAGACCATCGGTCGCACGGAGGATCTTTTTCAGATCTTTATCCTGCACAAAGCGCGCGATCCCGGTCATCGCCGAAAGCAGTGTTGCAt                                                                                                                                                                                                                                                                           <  2:2352447/224‑1 (MQ=255)
                                                                            tcgcCATCTCCGGCAGCGAATGGAATAGCGCTTTTCCGGCGTCGGTGGAGTGGATATAGCGCCCTTTTTTGGTCAGGAAACCACGCTTGAACAACAGTTCAATAATCCCGGCACGCGTTGCCTCTGTCCCCAGACCATCGGTCGCACGGAGGATCTTTTTCAGATCTTTATCCTGCACAAAGCGCGCGATCCCGGTCATCGCCGAAAGCAGTGTTGCATCGGTAAAATGGCGCGGCGGCTGGGTTTGCCGCTCTACCACTTCACCTTTTTCACACAGCAACTCATCGc                                                                                                                                                                                                      >  2:1116354/1‑288 (MQ=255)
                                                                                 aTCTCCGGCAGCGAATGGAATAGCGCTTTTCCGGCGTCGGTGGAGTGGATATAGCGCCCTTTTTTGGTCAGGAAACCACGCTTGAACAACAGTTCAATAATCCCGGCACGCGTTGCCTCTGTCCCCAGACCATCGGTCGCACGGAGGATCTTTTTCAGATCTTTATCCTGCACAAAGCGCGCGATCCCGGTCATCGCCGAAAGCAGTGTTGCATCGGTAAAATGGCGCGGCGGCTGGGTTTGCCGCTCTACCACTTCACCTTTTTCACACAGCAACTCATCGCCTTTCg                                                                                                                                                                                                <  1:1122330/289‑1 (MQ=255)
                                                                                    tccggaagcgaaTGGAATATGGCTTTTCGGGCGTGGGGGGGGTGGATATAGCGCCCTTTTTTGGTCAGGAAACCACGCTTGAACAACAGTTCAATAATCCCGGCACGCGTTGCCTCTGTCCCCAGACCATCGGTCGCACGGAGGATCTTTTTCAGATCTTTATCCTGCACAAAGCGCGCGATCCCGGTCATCGCCGAAAGCAGTGTTGCATCGGTAAAATGGCGCGGCGGCTGGGTTTGCCGCTCTACCACTTCACCTTTTTCACACAGCAACTCATCGCCTTTCg                                                                                                                                                                                                <  2:2160505/275‑1 (MQ=255)
                                                                                      cggcagcgaaTGGAATAGCGCTTTTCCGGCGTCGGTGGAGTGGATATAGCGCCCTTTTTTGGTCAGGAAACCACGCTTGAACAACAGTTCAATAATCCCGGCACGCGTTGCCTCTGTCCCCAGACCATCGGTCGCACGGAGGATCTTTTTCAGATCTTTATCCTGCACAAAGCGCGCGATCCCGGTCATCGCCGAAAGCAGTGTTGCATCGGTAAAATGGCGCGGCGGCTGGGTTTGCCGCTCTACCACTTCACCTTTTTCACACAGCAACTCATCGCCTTTCGccacc                                                                                                                                                                                           <  1:863108/280‑1 (MQ=255)
                                                                                      cGGCAGGGAATGGAATGGTGCTTGTCCGGCGTCGGTGGAGTGGTTATAGCGCCCTGTTTTGGTCAGGAAACCAAGCTTGAACAACAGTTCAATAATCCCGGCACGCGTTGCCTCTGTCCCCCGACCATCGGTCGCACGGAGGATCTTTTTCAGATCTTTATCCTGCACAAAGCGCGCGATCCCGGTCATCGCCGAAAGCAGTGTTGCATCGGTAAAATGGCGCGGCGGCTGGGTTTGCCGCTCTACCACTTCACCTTTTTCACACAGCAACTCATCGCCTTTCGccacc                                                                                                                                                                                           <  2:1964180/289‑1 (MQ=255)
                                                                                          agcgaaTGGAATAGCGCTTTTCCGGCGTCGGTGGAGTGGATATAGCGCCCTTTTTTGGTCAGGAAACCACGCTTGAACAACAGTTCAATAATCCCGGCACGCGTTGCCTCTGTCCCCAGACCATCGGTCGCACGGAGGATCTTTTTCAGATCTTTATCCTGCACAAAGCGCGCGATCCCGGTCATCGCCGAAAGCAGTGTTGCATCGGTAAAATGGCGCGGCGGCTGGGTTTGCCGCTCTACCACTTCACCTTTTTCACACAGCAACTCATCGCCTTTCGCCACcaca                                                                                                                                                                                        <  1:1916744/283‑1 (MQ=255)
                                                                                          agcgaaTGGAATAGCGCTTTTCCGGCGTCGGTGGAGTGGATATAGCGCCCTTTTTTGGTCAGGAAACCACGCTTGAACAACAGTTCAATAATCCCGGCACGCGTTGCCTCTGTCCCCAGACCATCGGTCGCACGGAGGATCTTTTTCAGATCTTTATCCTGCACAAAGCGCGCGATCCCGGTCATCGCCGAAAGCAGTGTTGCATCGGTAAAATGGCGCGGCGGCTGGGTTTGCCGCTCTACCACTTCACCTTTTTCACACAGCAACTCATCGCCTTTCGCCACcaca                                                                                                                                                                                        <  1:714308/283‑1 (MQ=255)
                                                                                             gaaTGGAATAGCGCTTTTCTGGCGTCGGTGGAGTGGATATAGCGCCCTTTTTTGGTCAGGAAACCACGCTTGAACAACAGTTCAATAATCCCGGCACGCGTTGCCTCTGTCCCCAGACCATCGGTCGCACGGAGGATCTTTTTCAGATCTTTATCCTGCACAAAGCGCGCGATCCCGGTCATCGCCGAAAGCAGTGTTGCATCGGTAAAATGGCGCGGCGGCTGGGTTTGCCGCTCTACCACTTCACCTTTTTCACACAGCAACTCATCGCCTTTCGCCACCACAgg                                                                                                                                                                                      <  1:289330/285‑1 (MQ=255)
                                                                                              aaTGGAATAGCGCTTTTCCGGCGTCGGTGGAGTGGATATAGCGCCCTTTTTTGGTCAGGAAACCACGCTTGAACAACAGTTCAATAATCCCGGCACGCGTTGCCTCTGTCCCCAGACCATCGGTCGCACGGAGGATCTTTTTCAGATCTTTATCCTGCACAAAGCGCGCGATCCCGGTCATCGCCGAAAGCAGTGTTGCATCGGTAAAATGGCGCGGCGGCTGGGTTTGCCGCTCTACCCCTTCACCTTTTTCACACAGCAACTCATCGCCTTTCGCCACCCCAGGccg                                                                                                                                                                                   >  1:888094/2‑287 (MQ=255)
                                                                                              aaTGGAATAGCGCTTTTCCGGCGTCGGTGGAGTGGATATAGCGCCCTTTTTTGGTCAGGAAACCACGCTTGAACAACAGTTCAATAATCCCGGCACGCGTTGCCTCTGTCCCCAGACCATCGGTCGCACGGAGGATCTTTTTCAGATCTTTATCCTGCACAAAGCGCGCGATCCCGGTCATCGCCGAAAGCAGTGTTGCATCGGTAAAATGGCGCGGCGGCTGGGTTTGCCGCTCTACCACTTCACCTTTTTCACACAGCAACTCATCGCCTTTCGCCACCACAGGCAg                                                                                                                                                                                   >  1:81095/2‑289 (MQ=255)
                                                                                              aaTGGAATAGCGCTTTTCCGGCGTCGGTGGAGTGGATATAGCGCCCTTTTTTGGTCAGGAAACCACGCTTGAACAACAGTTCAATAATCCCGGCACGCGTTGCCTCTGTCCCCAGACCATCGGTCGCACGGAGGATCTTTTTCAGATCTTTATCCTGCACAAAGCGCGCGATCCCGGTCATCGCCGAAAGCAGTGTTGCATCGGTAAAATGGCGCGGCGGCTGGGTTTGCCGCTCTACCACTTCACCTTTTTCACACAGCAACTCATCGCCTTTCGCCACCACAGGCAg                                                                                                                                                                                   >  1:1557378/2‑289 (MQ=255)
                                                                                                         gcTTTTCCGGCGTCGGTGGAGTGGATATAGCGCCCTTTTTTGGTCAGGAAACCACGCTTGAACAACAGTTCAATAATCCCGGCACGCGTTGCCTCTGTCCCCAGACCATCGGTCGCACGGAGGATCTTTTTCAGATCTTTATCCTGCACTAAGCGCGCGATCCCGGTCATCGCCGAAAGCAGTGTTGCATCGGTAAAATGGCGCGGCGGCTGGGTTTGCCGCTCTACCACTTCACCTTTTTCACACGGCAACTCATCGCCTTTCGCCACCACAGGCAGTGGCGTGCcg                                                                                                                                                                         <  2:111030/288‑1 (MQ=255)
                                                                                                             ttCCGGCGTCGGTGGAGTGGATATAGCGCCCTTTTTTGGTCAGGAAACCACGCTTGAACAACAGTTCAATAATCCCGGCACGCGTTGCCTCTGTCCCCAGACCATCGGTCGCACGGAGGATCTTTTTCAGATCTTTATCCTGCACAAAGCGCGCGATCCCGGTCATCGCCGAAAGCAGTGTTGCATCGGTAAAATGGCGCGGCGGCTGGGTTTGCCGCTCTACCCCTTCACCTTTTTCACACAGCAACTCATCTCCTTTCGCCACCCCAGGACGTGGCGTGCCTGCGtt                                                                                                                                                                    >  2:2251908/1‑289 (MQ=255)
                                                                                                             ttCCGGCGTCGGTGGAGTGGATATAGCGCCCTTTTTTGGTCAGGAAACCACGCTTGAACAACAGTTCAATAATCCCGGCACGCGTTGCCTCTGTCCCCAGACCATCGGTCGCACGGAGGATCTTTTTCAGATCTTTATCCTGCACAAAGCGCGCGATCCCGGTCATCGCCGAAAGCAGTGTTGCATCGGTAAAATGGCGCGGCGGCTGGGTTTGCCGCTCTACCACTTCACCTTTTTCACACAGCAACTCATCGCCTTTCGCCACCACAGGCAGTGGCGTGCCGTCGtt                                                                                                                                                                    >  2:612844/1‑289 (MQ=255)
                                                                                                                  gCGTCGGTGGAGTGGATATAGCGCCCTTTTTTGGTCAGGAAACCACGCTTGAACAACAGTTCAATAATCCCGGCACGCGTTGCCTCTGTCCCCAGACCATCGGTCGCACGGAGGATCTTTTTCAGATCTTTATCCTGCACAAAGCGCGCGATCCCGGTCATCGCCGAAAGCAGTGTTGCATCGGTAAAATGGCGCGGCGGCTGGGTTTGCCGCTCTACCACTTCACCTTTTTCACACAGCAACTCATCGCCTTTCGCCACCACAGGCAGTGGCGTGCCGTCGTTttct                                                                                                                                                                <  2:1352199/288‑1 (MQ=255)
                                                                                                                       ggTGGAGTGGATATAGCGCCCTTTTTTGGTCAGGAAACCACGCTTGAACAACAGTTCAATAATCCCGGCACGCGTTGCCTCTGTCCCCAGACCATCGGTCGCACGGAGGATCTTTTTCAGATCTTTATCCTGCACAAAGCGCGCGATCCCGGTCATCGCCGAAAGCAGTGTTGCAt                                                                                                                                                                                                                                                                           >  2:444739/1‑176 (MQ=255)
                                                                                                                          ggagtggaTATAGCGCCCTTTTTTGGTCAGGAAACCACGCTTGAACAACAGTTCAATAATCCCGGCACGCGTTGCCTCTGTCCCCAGACCATCGGTCGCACGGAGGATCTTTTTCAGATCTTTATCCTGCACAAAGCGCGCGATCCCGGTCATCGCCGAAAGCAGTGTTGCATCGGTAAAATGGCGCGGCGGCTGGGTTTGCCGCTCTACCACTTCACCTTTTTCACACAGCAACTCATCGCCTTTCGCCACCACAGGCAGTGGCGTGCCGTCGTTTTCTTCATcgcg                                                                                                                                                        <  2:81095/288‑1 (MQ=255)
                                                                                                                               ggaTATAGCGCCCTTTTTTGGTCAGGAAACCACGCTTGAACAACAGTTCAATAATCCCGGCACGCGTTGCCTCTGTCCCCAGACCATCGGTCGCACGGAGGATCTTTTTCAGATCTTTATCCTGCACAAAGCGCGCGATCCCGGTCATCGCCGAAAGCAGTGTTGCATCGGTAAAATGGCGCGGCGGCTGGGTTTGCCGCTCTACCACTTCACCTTTTTCACACAGCAACTCATCGCCTTTCGCCACCACAGGCAGTGGCGTGCCGTCGTTTTCTTCATCGCGCTCtt                                                                                                                                                   <  2:2103570/288‑1 (MQ=255)
                                                                                                                                gaTATTACGCCCTTTTTTGAGTAGCAAACCACACTTGAACAACAGTTCAATAATCCCGGCACGCGTTGCCTCTGTCCCCAGACCATCGGTCGCACGGAGGATCTTTTTCAGATCTTTATCCTGCACAAAGCGCGCGATCCCGGTCATCGCCGAAAGCAGTGTTGCATCGGTAAAATGGCGCGGCGGCTGGGTTTGCCGCTCTACCACTTCACCTTTTTCACACAGCAACTCATCGCCTTTCGCCACCACAGGCAGTGGCGTGCCGTCGTTTTCTTCATCGCGCTCTTtg                                                                                                                                                 <  2:1813596/289‑1 (MQ=255)
                                                                                                                                 atatAGCGCCCTTTTTTGGTCAGGAAACCACGCTTGAACAACAGTTCAATAATCCCGGCACGCGTTGCCTCTGTCCCCAGACCATCGGTCGCACGGAGGATCTTTTTCAGATCTTTATCCTGCACAAAGCGCGCGATCCCGGTCATCGCCGAAAGCAGTGTTGCATCGGTAAAATGGCGCGGCGGCTGGGTTTGCCGCTCTACCACTTCACCTTTTTCACACAGCAACTCATCGCCTTTCGCCACCACAGGCAGTGGCGTGCCGTCGTTTTCTTCATCGCGCTCTTtg                                                                                                                                                 <  1:1855546/288‑1 (MQ=255)
                                                                                                                                 atatAGCGCCCTTTTTTGGTCAGGAAACCACGCTTGAACAACAGTTCAATAATCCCGGCACGCGTTGCCTCTGTCCCCAGACCATCGGTCGCACGGAGGATCTTTTTCAGATCTTTATCCTGCACAAAGCGCGCGATCCCGGTCATCGCCGAAAGCAGTGTTGCATCGGTAAAATGGCGCGGCGGCTGGGTTTGCCGCTCTACCACTTCACCTTTTTCACACAGCAACTCATCGCCTTTCGCCACCACAGGCAGTGGCGTGCCGTCGTTTTCTTCATCGCGCTCTTtg                                                                                                                                                 <  2:337072/288‑1 (MQ=255)
                                                                                                                                 atatAGCGCCCTTTTTTGGTCAGGAAACCACGCTTGAACAACAGTTCAATAATCCCGGCACGCGTTGCCTCTGTCCCCAGACCATCGGTCGCACGGAGGATCTTTTTCAGATCTTTATCCTGCACAAAGCGCGCGATCCCGGTCATCGCCGAAAGCAGTGTTGCATCGGTAAAATGGCGCGGCGGCTGGGTTTGCCGCTCTACCACTTCACCTTTTTCACACAGCAACTCATCGCCTTTCGCCACCACAGGCAGTGGCGTGCCGTCGTTTTCTTCATCGCGCTCTTtg                                                                                                                                                 <  2:2579189/288‑1 (MQ=255)
                                                                                                                                 atatAGCGCCCTTTTTTGGTCAGGAAACCACGCTTGAACAACAGTTCAATAATCCCGGCACGCGTTGCCTCTGTCCCCAGACCATCGGTCGCACGGAGGATCTTTTTCAGATCTTTATCCTGCACAAAGCGCGCGATCCCGGTCATCGCCGAAAGCAGTGTTGCATCGGTAAAATGGCGCGGCGGCTGGGTTTGCCGCTCTACCACTTCACCTTTTTCACACAGCAACTCATCGCCTTTCGCCACCACAGGCAGTGGCGTGCCGTCGTTTTCTTCATCGCGCTCTTtg                                                                                                                                                 <  1:449218/288‑1 (MQ=255)
                                                                                                                                 atatAGCGCCCTTTTTTGGTCAGGAAACCACGCTTGAACAACAGTTCAATAATCCCGGCACGCGTTGCCTCTGTCCCCAGACCATCGGTCGCACGGAGGATCTTTTTCAGATCTTTATCCTGCACAAAGCGCGCGATCCCGGTCATCGCCGAAAGCAGTGTTGCATCGGTAAAATGGCGCGGCGGCTGGGTTTGCCGCTCTACCACTTCACCTTTTTCACACAGCAACTCATCGCCTTTCGCCACCACAGGCAGTGGCGTGCCGTCGTTTTCTTCATCGCGCTCTTtg                                                                                                                                                 <  1:2241730/288‑1 (MQ=255)
                                                                                                                                      gcgcCCTTTTTTGGTCAGGAAACCACGCTTGAACAACAGTTCAATAATCCCGGCACGCGTTGCCTCTGTCCCCAGACCATCGGTCGCACGGAGGATCTTTTTCAGATCTTTATCCTGCACAAGGCGCGCGATCCCGGTCATCGCCGAAAGCAGTCTTGCATCGGTAAAATGGCGCGGCGGCTGGGTTTGCCGCTCTACCACTTCACCTTTTTCACACAGCAACTCATCGCCTTTCGCCACCACAGGCAGTGGCGTGCCGTCGTTTTCTTCACCGCGCTCTTTCCTGCCt                                                                                                                                           >  1:2342395/1‑289 (MQ=255)
                                                                                                                                       cgcCCTTTTTTGGTCAGGAAACCACGCTTGAACAACAGTTCAATAATCCCGGCACGCGTTGCCTCTGTCCCCAGACCATCGGTCGCACGGAGGATCTTTTTCAGATCTTTATCCTGCACAAAGCGCGCGATCCCGGTCATCGCCGAAAGCAGTGTTGCATCGGTAAAATGTCGCGGCGGCTGGGTTTGCCGCTCTACCACTTCACCTTTTTCACACAGCAACTCATCGCCTTTCGCCACCACAGGCAGTGGCGTGCCGTCGTTTTCTTCATCGCGCTCTTTGCTGCCTa                                                                                                                                          >  1:1606701/1‑289 (MQ=255)
                                                                                                                                       cgcCCTTTTTTGGTCAGGAAACCACGCTTGAACAACAGTTCAATAATCCCGGCACGCGTTGCCTCTGTCCCCAGACCATCGGTCGCACGGAGGATCTTTTTCAGATCTTTATCCTGCACAAAGCGCGCGATCCCGGTCATCGCCGAAAGCAGTGTTGCATCGGTAAAATGGCGCGGCGGCTGGGTTTGCCGCTCTACCACTTCACCTTTTTCACACAGCAACTCATCGCCTTTCGCCACCACAGGCAGTGGCGTGCCGTCGTTTTCTTCATCGCGCTCTTTGCTGCCTa                                                                                                                                          >  2:2227461/1‑289 (MQ=255)
                                                                                                                                          ccTTTTTTGGTCAGGAAACCACGCTTGAACAACAGTTCAATAATCCCGGCACGCGTTGCCTCTGTCCCCAGACCATCGGTCGCACGGAGGATCTTTTTCAGATCTTTATCCTGCACAAAGCGCGCGATCCCGGTCATCGCCGAAAGCAGTGTTGCATCGGTAAAATGGCGCGGCGGCTGGGTTTGCCGCTCTACCACTTCAc                                                                                                                                                                                                                              <  1:1667179/202‑1 (MQ=255)
                                                                                                                                          ccTTTTTTGGTCAGGAAACCACGCTTGAACAACAGTTCAATAATCCCGGCACGCGTTGCCTCTGTCCCCAGACCATCGGTCGCACGGAGGATCTTTTTCAGATCTTTATCCTGCACAAAGCGCGCGATCCCGGTCATCGCCGAAAGCAGTGTTGCATCGGTAAAATGGCGCGGCGGCTGGGTTTGCCGCTCTACCACTTCAc                                                                                                                                                                                                                              >  2:1667179/1‑202 (MQ=255)
                                                                                                                                          ccTTTTTTGGTCAGGAAACCACGCTTGAACAACAGTTCAATAATCCCGGCACGCGTTGCCTCTGTCCCCAGACCATCGGTCGCACGGAGGATCTTTTTCAGATCTTTATCCTGCACAAAGCGCGCGATCCCGGTCATCGCCGAAAGCAGTGTTGCATCGGTAAAATGGCGCGGCGGCTGGGTTTGCCGCTCTACCACTTCACCTTTTTca                                                                                                                                                                                                                      <  2:25223/210‑1 (MQ=255)
                                                                                                                                          ccTTTTTTGGTCAGGAAACCACGCTTGAACAACAGTTCAATAATCCCGGCACGCGTTGCCTCTGTCCCCAGACCATCGGTCGCACGGAGGATCTTTTTCAGATCTTTATCCTGCACAAAGCGCGCGATCCCGGTCATCGCCGAAAGCAGTGTTGCATCGGTAAAATGGCGCGGCGGCTGGGTTTGCCGCTCTACCACTTCACCTTTTTca                                                                                                                                                                                                                      >  1:25223/1‑210 (MQ=255)
                                                                                                                                          ccTTTTTTGGTCAGGAAACCACGCTTGAACAACAGTTCAATAATCCCGGCACGCGTTGCCTCTGTCCCCAGACCATCGGTCGCACGGAGGATCTTTTTCAGATCTTTATCCTGCACAAAGCGCGCGATCCCGGTCATCGCCGAAAGCAGTGTTGCATCGGTAAAATGGCGCGGCGGCTGGGTTTGCCGCTCTACCACTTCACCTTTTTCACACAGCAACTCATCGCCttt                                                                                                                                                                                                  >  1:2676089/1‑230 (MQ=255)
                                                                                                                                          ccTTTTTTGGTCAGGAAACCACGCTTGAACAACAGTTCAATAATCCCGGCACGCGTTGCCTCTGTCCCCAGACCATCGGTCGCACGGAGGATCTTTTTCAGATCTTTATCCTGCACAAAGCGCGCGATCCCGGTCATCGCCGAAAGCAGTGTTGCATCGGTAAAATGGCGCGGCGGCTGGGTTTGCCGCTCTACCACTTCACCTTTTTCACACAGCAACTCATCGCCTTTCGCCACCACAGGCAGTGGCGTGCCGTCGTTTTCTTCATCGCGCTCTTtg                                                                                                                                                 <  1:1775332/279‑1 (MQ=255)
                                                                                                                                          ccTTTTTTGGTCAGGAAACCACGCTTGAACAACAGTTCAATAATCCCGGCACGCGTTGCCTCTGTCCCCAGACCATCGGTCGCACGGAGGATCTTTTTCAGATCTTTATCCTGCACAAAGCGCGCGATCCCGGTCATCGCCGAAAGCAGTGTTGCATCGGTAAAATGGCGCGGCGGCTGGGTTTGCCGCTCTACCACTTCACCTTTTTCACACAGCAACTCATCGCCTTTCGCCACCACAGGCAGTGGCGTGCCGTCGTTTTCTTCATCGCGCTCTTTGCTGCCTAACa                                                                                                                                       >  1:380171/1‑289 (MQ=255)
                                                                                                                                            ttttttGGTCAGGAACGCACGCTTGAACAACAGTTCAATAATCCCGGCACGCGTTGCCTCTGTCCCCAGACCATCGGTCGCACGGAGGATCTTTTTCAGATCTTTATCCTGCACAAAGCGCGCGATCCCGGTCATCGCCGAAAGCAGTGTTGCATCGGTAAAATGGCGCGGCGGCTGGGTTTGCCGCTCTACCACTTCACCTTTTTCACACAGCAACTCATCGCCTTTCGCCACCACAGGCAGTGGCGTGCCGTCGTTTTCTTCATCGCGCTCTTTGCTGCCTAACAGc                                                                                                                                     <  2:1250066/289‑1 (MQ=255)
                                                                                                                                            ttttttGGTCAGGAAACCACGCTTGAACAACAGTTCAATAATCCCGGCACGCGTTGCCTCTGTCCCCAGACCATCGGTCGCACGGAGGATCTTTTTCAGATCTTTATCCTGCACAAAGCGCGCGATCCCGGTCATCGCCGAAAGCAGTGTTGCATCGGTAAAATGGCGCGGCGGCTGGGTTTGCCGCTCTACCACTTCACCTTTTTCACACAGCAACTCATCGCCTTTCGCCACCACAGGCAGTGGCGTGCCGTCGTTTTCTTCATCGCGCTCTTTGCTGCCTAACAGc                                                                                                                                     >  1:2591314/1‑289 (MQ=255)
                                                                                                                                                 tGGTCAGGAAACCACGCTTGAACAACAGTTCAATAATCCCGGCACGCGTTGCCTCTGTCCCCAGACCATCGGTCGCACGGAGGATCTTTTTCAGATCTTTATCCTGCACAAAGCGCGCGATCCCGGTCATCGCCGAAAGCAGTGTTGCATCGGTAAAATGGCGCGGCGGCTGGGTTTGCCGCTCTACCACTTCACCTTTTTCACACAGCAACTCATCGCCTTTCGCCACCACAGGCAGTGGCGTGCCGTCGTTTTCTTCATCGCGCTCTTTGCTGCCTAACAGCGTgcg                                                                                                                                <  2:1557378/289‑1 (MQ=255)
                                                                                                                                                     cAGGAAACCACGCTTGAACAACAGTTCAATAATCCCGGCACGCGTTGCCTCTGTCCCCAGACCATCGGTCGCACGGAGGATCTTTTTCAGATCTTTATCCTGCACAAAGCGCGCGATCCCGGTCATCGCCGAAAGCAGTGTTGCATCGGTAAAATGGCGCGGCGGCTGGGTTTGCCGCTCTACCACTTCACCTTTTTCACACAGCAACTCATCGCCTTTCGCCACCACAGGCAGTGGCGTGCCGTCGTTTTCTTCATCGCGCTCTTTGCTGCCTAACAGCGTGCGCCa                                                                                                                             >  2:226806/1‑288 (MQ=255)
                                                                                                                                                        gAAACCACGCTTGAACAACAGTTCAATAATCCCGGCACGCGTTGCCTCTGTCCCCAGACCATCGGTCGCACGGAGGATCTTTTTCAGATCTTTATCCTGCACAAAGCGCGCGATCCCGGTCATCGCCGAAAGCAGTGTTGCATCGGTAAAATGGCGCGGCGGCTGGGTTTGCCg                                                                                                                                                                                                                                            <  1:580259/174‑1 (MQ=255)
                                                                                                                                                         aaaCCACGCTTGAACAACAGTTCAATAATCCCGGCACGCGTTGCCTCTGTCCCCAGACCATCGGTCGCACGGAGGATCTTTTTCAGATCTTTATCCTGCACAAAGCGCGCGATCCCGGTCATCGCCGAAAGCAGTGTTGCATCGGTAAAATGGCGCGGCGGCTGGGTTTGCCGCTCTACCACTTCACCTTTTTCACACAGCAACTCATCGCCTTTCGCCACCACAGGCAGTGGCGTGCCGTCGTTTTCTTCATCGCGCTCTTTGCTGCCTAACAGCGTGCGCCAGc                                                                                                                           <  1:2030530/286‑1 (MQ=255)
                                                                                                                                                                     aacaacAGTTCAATAATCCCGGCACGCGTTGCCTCTGTCCCCAGACCATCGGTCGCACGGAGGATCTTTTTCAGATCTTTATCCTGCACAAAGCGCGCGATCCCGGTCATCGCCGAAAGCAGTGTTGCATCGGTAAAATGGCGCGGCGGCTGGGTTTGCCGCTCTACCACTTCACCTTTTTCACACAGCAACGCATCGCCTTTCGCCACCACACGCAGTGGCGTGCCGTCGTCTTCTTCATCGCGCTCTTTGCTGCCTAACCGCGTCCGCCAGCCTGCTTCAGTAAGaa                                                                                                            >  2:2474884/1‑289 (MQ=255)
                                                                                                                                                                          caGTTCAATAATCCCGGCACGCGTTGCCTCTGTCCCCAGACCATCGGTCGCACGGAGGATCTTTTTCAGATCTTTATCCTGCACAAAGCGCGCGATCCCGGTCATCGCCGAAAGCAGTGTTGCATCGGTAAAATGGCGCGGCGGCTGGGTTTGCCGCTCTACCACTTCACCTTTTTCACACAGCAACTCATCGCCTTTCGCCACCACAGGCAGTGGCGTGCCGTCGTTTTCTTCATc                                                                                                                                                           >  1:528259/1‑237 (MQ=255)
                                                                                                                                                                          caGTTCAATAATCCCGGCACGCGTTGCCTCTGTCCCCAGACCATCGGTCGCACGGAGGATCTTTTTCAGATCTTTATCCTGCACAAAGCGCGCGATCCCGGTCATCGCCGAAAGCAGTGTTGCATCGGTAAAATGGCGCGGCGGCTGGGTTTGCCGCTCTACCACTTCACCTTTTTCACACAGCAACTCATCGCCTTTCGCCACCACAGGCAGTGGCGTGCCGTCGTTTTCTTCATc                                                                                                                                                           <  2:528259/237‑1 (MQ=255)
                                                                                                                                                                            gTTCAATAATCCCGGCACGCGTTGCCTCTGTCCCCAGACCATCGGTCGCACGGAGGATCTTTTTCAGATCTTTATCCTGCACAAAGCGCGCGATCCCGGTCATCGCCGAAAGCAGTGTTGCATCGGTAAAATGGCGCGGCGGCTGGGTTTGc                                                                                                                                                                                                                                              <  1:604462/152‑1 (MQ=255)
                                                                                                                                                                            gTTCAATAATCCCGGCACGCGTTGCCTCTGTCCCCAGACCATCGGTCGCACGGAGGATCTTTTTCAGATCTTTATCCTGCACAAAGCGCGCGATCCCGGTCATCGCCGAAAGCAGTGTTGCATCGGTAAAATGGCGCGGCGGCTGGGTTTGCCGCTCTACCACTTCACCTTTTTCACACAGCAACTCAt                                                                                                                                                                                                         <  2:878726/189‑1 (MQ=255)
                                                                                                                                                                            gTTCAATAATCCCGGCACGCGTTGCCTCTGTCCCCAGACCATCGGTCGCACGGAGGATCTTTTTCAGATCTTTATCCTGCACAAAGCGCGCGATCCCGGTCATCGCCGAAAGCAGTGTTGCATCGGTAAAATGGCGCGGCGGCTGGGTTTGCCGCTCTACCACTTCACCTTTTTCACACAGCAACTCATCGCCTTTCGCCACCACAGGCAGTGGCGTGCCGTCGTTTTCTTCATCGCGCTCTTTGCTGCCTAACAGCGTGCGCCAGCCTGCTTCAGCAAGAAAAcgc                                                                                                       >  1:1461535/1‑287 (MQ=255)
                                                                                                                                                                              tCAATAATCCCGGCACGCGTTGCCTCTGTCCCCAGACCATCGGTCGCACGGAGGATCTTTTTCAGATCTTTATCCTGCACAAAGCGCGCGATCCCGGTCATCGCCGAAAGCAGTGTTGCATCGGTAAAATGGCGCGGCGGCTGGGTTTGCCGCTCTACCACTTCACCttttt                                                                                                                                                                                                                        <  1:2378086/172‑1 (MQ=255)
                                                                                                                                                                              tCAATAATCCCGGCACGCGTTGCCTCTGTCCCCAGACCATCGGTCGCACGGAGGATCTTTTTCAGATCTTTATCCTGCACAAAGCGCGCGATCCCGGTCATCGCCGAAAGCAGTGTTGCATCGGTAAAATGGCGCGGCGGCTGGGTTTGCCGCTCTACCACTTCACCtttta                                                                                                                                                                                                                        >  2:2378086/1‑171 (MQ=255)
                                                                                                                                                                               cAATAATCCCGGCACGCGTTGCCTCTGTCCCCAGACCATCGGTCGCACGGAGGATCTTTTTCAGATCTTTATCCTGCACAAAGCGCGCGATCCCGGTCATCGCCGAAAGCAGTGTTGCATCGGTAAAATGGCGCGGCGGCTGGGTTTGCTGCTCTACCACTTCACCTTTTTCACACAGCAACTCATCGCCTTTCGCCACCACAGGCAGTGGCGTGCCGTCGTTTTCTTCATCGCGCTCTTTGCTGCCTAACAGCGTGCGCCAGCCTGCTTCAGCAAGAAAACGCGCttt                                                                                                  >  2:1374408/1‑289 (MQ=255)
                                                                                                                                                                                       ccGGCACGCGTTGCCTCTGTCCCCAGACCATCGGTCGCACGGAGGATCTTTTTCAGATCTTTATCCTGCACAAAGCGCGCGATCCCGGTCATCGCCGAAAGCAGTGTTGCATCGGTAAAATGGCGCGGCGGCTGGGTTTGCCGCTCTACCACTTCACCTTTTTCACACAGCAACTCATCGCCTTTCGCCACCACAGGCAGTGGCGTGCCGTCGTTTTCTTCATCGCCCTCTTTGCTCCCTAACACCGTGCGCCAGCCTGCTTCAGCACGACAACGCCCTTTAGCCAcca                                                                                          >  2:1866349/1‑287 (MQ=255)
                                                                                                                                                                                         ggCACGCGTTGCCTCTGTCCCCAGACCATCGGTCGCACGGAGGATCTTTTTCAGATCTTTATCCTGCACAAAGCGCGCGATCCCGGTCATCGCCGAAAGCAGTGTTGCATCGGTAAAATGGCGCGGCGGCTGGGTTTGCCGCTCTACCACTTCACCTTTTTCACACAGCAACTCATCGCCTTTCGCCACCACAGGCAGTGGCGTGCCGTCGTTTTCTTCATCGCGCTCTTTGCTGCCTAACAGCGTGCGCCAGCCTGCTTCAGCAAGAAAACGCGCTTTAGCGACAAAt                                                                                        <  1:2227461/289‑1 (MQ=255)
                                                                                                                                                                                                gTTGCCTCTGTCCCCAGACCATCGGTCGCACGGAGGATCTTTTTCAGATCTTTATCCTGCACAAAGCGCGCGATCCCGGTCATCGCCGAAAGCAGTGTTGCATCGGTAAAATGGCGCGGGGGCTGGGTTTGCCGCTCTACCACTTCACCTTTTTCACACAGCAACTCATCGCCTTTCGccacc                                                                                                                                                                                           <  2:492695/183‑1 (MQ=255)
                                                                                                                                                                                                gTTGCCTCTGTCCCCAGACCATCGGTCGCACGGAGGATCTTTTTCAGATCTTTATCCTGCACAAAGCGCGCGATCCCGGTCATCGCCGAAAGCAGTGTTGCATCGGTAAAATGGCGCGGCGGCTGGGTTTGCCGCTCTACCACTTCACCTTTTTCACACAGCAACTCATCGCCTTTCGccacc                                                                                                                                                                                           >  1:492695/1‑183 (MQ=255)
                                                                                                                                                                                                              cAGACCATCGGTCGCACGGAGGATCTTTTTCAGATCTTTATCCTGCACAAAGCGCGCGATCCCGGTCATCGCCGAAAGCAGTGTTGCATCGGTAAAATGGCGCGGCGGCTGGGTTTGCCGCTCTACCACTTCACCTTTTTCACACAGCAACTCATCGCCTTTCGCCACCACAGGCAGTGGCGTGCCGTCGTTTTCTTCATCGCGCTCTTTGCTGCCTAACAGCGTTCGCCAGCCTGCTTCAGCAAGAAAACGCGCTTTAGCGACAAATTTGCCTTTTGCAATGTCCAGt                                                                   >  1:1021223/1‑289 (MQ=255)
                                                                                                                                                                                                                gACCATCGGTCGCACGGAGGATCTTTTTCAGATCTTTATCCTGCACAAAGCGCGCGATCCCGGTCATCGCCGAAAGCAGTGTTGCATCGGTAAAATGGCGCGGCGGCTGGGTTTGCCGCTCTACCACTTCACCTTTTTCACACAGCAACTCATCGCCTTTCGCCACCACAGGCAGTGGCGTGCCGTCGTTTTCTTCATCGCGCTCTTTGCTGCCTAACAGCGTGCGCCAGCCTGCTTCAGCAAGAAAACGCGCTTTAGCGACCAATTTGCCTTTGGCAATGTCCAGTTc                                                                 >  2:2011028/1‑289 (MQ=255)
                                                                                                                                                                                                                  ccATCGGTCGCACGGAGGATCTTTTTCAGATCTTTATCCTGCACAAAGCGCGCGATCCCGGTCATCGCCGAAAGCAGTGTTGCATCGGTAAAATGGCGCGGCGGCTGGGTTTGCCGCTCTACCACTTCACCTTTTTCACACAGCAACTCATCGCCTTTCGCCACCACAGGCAGTGGCGTGCCGTCGTTTTCTTCATCGCGCTCTTTGCTGCCTAACAGCGTGCGCCAGCCTGCTTCAGCAAGAAAACGCGCTTTAGCGACAAATTTGCCTTTGGCAATGTCCAGTTc                                                                 <  2:1459429/287‑1 (MQ=255)
                                                                                                                                                                                                                    aTCGGTCGCACGGAGGATCTTTTTCAGATCTTTATCCTGCACAAAGCGCGCGATCCCGGTCATCGCCGAACGCAGTGTTGCATCGGTAAAATGGCGCGGCGGCGGGGTTTGCCGCTCTACCACTTCACCTTTTTCACACAGCAACTCATCGCCTTTCGCCACCACAGGCAGTGGCGCGCCGTCGTTTTCTTCATCGCGCCCTTTGCTGCCTAACAGCGTTCGCCATCCTGCTTCATCCAGAAAACGCCCCTTCGTGACACATTTTCTTTTGCCAGTGTCCAGTTCAATa                                                             >  2:1141474/1‑289 (MQ=255)
                                                                                                                                                                                                                    aTCGGTCGCACGGAGGATCTTTTTCAGATCTTTATCCTGCACAAAGCGCGCGATCCCGGTCATCGCCGAAAGCAGTGTTGCATCGGTAAAATGGCGCGGCGGCTGGGTTTGCCGCTCTACCACTTCACCTTTTTCACACAGCAACTCATCGCCTTTCGCCACCACAGGCAGTGGCGTGCCGTCGTTTTCTTCATCGCGCTCTTTGCTGCCTAACAGCGTGCGCCAGCCTGCTTCAGCAAGAAAACGCGCTTTAGCGACAAATTTGCCTTTGGCAATGTCCAGTTCGATa                                                             >  1:553180/1‑289 (MQ=255)
                                                                                                                                                                                                                    aTCGGTCGCACGGAGGATCTTTTTCAGATCTTTATCCTGCACAAAGCGCGCGATCCCGGTCATCGCCGAAAGCAGTGTTGCATCGGTAAAATGGCGCGGCGGCTGGGTTTGCCGCTCTACCACTTCACCTTTTTCACACAGCAACTCATCGCCTTTCGCCACCACAGGCAGTGGCGTGCCGTCGTTTTCTTCATCGCGCTCTTTGCTGCCTAACAGCGTGCGCCAGCCTGCTTCAGCAAGAAAACGCGCTTTAGCGACAAATTTGCCTTTGGCAATGTCCAGTTCGATa                                                             >  1:1815238/1‑289 (MQ=255)
                                                                                                                                                                                                                         tCGCACGGAGGATCTTTTTCAGATCTTTATCCTGCACAAAGCGCGCGATCCCGGTCATCGCCGAAAGCAGTGTTGCATCGGTAAAATGGCGCGGCGGCTGGGTTTGCCGCTCTACCACTTCACCTTTTTCACACAGCAACTCATCGCCTTTCGCCACCACAGGCAGTGGCGTGCCGTCGTTTTCTTCATCGCGCTCTTTGCTGCCTAACAGCGTGCGCCAGCCTGCTTCAGCAAGAAAACGCGCTTTAGCGACAAATTTGCCTTTGGCAATGTCCAGTTCGATAacac                                                         <  1:1970233/288‑1 (MQ=255)
                                                                                                                                                                                                                           gCACGGAGGATCTTTTTCAGATCTTTATCCTGCACAAAGCGCGCGATCCCGGTCATCGCCGAAAGCAGTGTTGCATCGGTAAAATGGCGCGGCGGCTGGGTTTGCCGCTCTACCACTTCACCTTTTTCACACAGCAACTCATCGCCTTTCGCCACCACAGGCAGTGGCGTGTCGTCGTTTTCTTCATCGCGCTCTTTGCTGCCTAACAGCGTGCGCCAGCCTGCTTCAGCAAGAAAACGCGCTTTAGCGACAAATTTGCCTTTGGCAATGTCCAGTTCGATAACACACt                                                      >  2:304505/1‑289 (MQ=255)
                                                                                                                                                                                                                              cGGAGGATCTTTTTCAGATCTTTATCCTGCACAAAGCGCGCGATCCCGGTCATCGCCGAAAGCAGTGTTGCATCGGTAAAATGGCGCGGCGGCTGGGTTTGCCGCTCTACCACTTCACCTTTTTCACACAGCAACTCATCGCCTTTCGCCACCACAGGCAGTGGCGTGCCGTCGTTTTCTTCATCGCGCTCTTTGCTGCCTAACAGCGTGCGCCAGCCTGCTTCAGCAAGAAAACGCGCTTTAGCGACAAATTTGCCTTTGGCAATGTCCAGTTCGATAACACACTTGc                                                   >  1:214108/1‑289 (MQ=255)
                                                                                                                                                                                                                                   gaTCTTTTTCAGATCTTTATCCTGCACAAAGCGCGCGATCCCGGTCATCGCCGAAAGCAGTGTTGCATCGGTAAAATGGCGCGGCGGCTGGGTTTGCCGCTCTACCACTTCACCTTTTTCACACAGCAACTCATCGCCTTTCGCCACCACAGGCAGTGGCGTGCCGTCGTTTTCTTCATCGCGCTCTTTGCTGCCTAACAGCGTGCGCCAGCCTGCTTCAGCAAGAAAACGCGCTTTAGCGACAAATTTGCCTTTGGCAATGTCCAGTTCGATaa                                                            >  2:759813/1‑275 (MQ=255)
                                                                                                                                                                                                                                          ttaaGATCTTTATCCTGACCAAAGCGCGCGATCCCGGTCATCGCCGAAAGCAGTGTTGCATCGGTAAAATGGCGCGGCGGCTGGGTTTGCCGCTCTACCACTTCACCTTTTTCACACAGCAACTCATCGCCTTTCGCCACCACAGGCAGTGGCGTGCCGTCGTTTTCTTCATCGCGCTCTTTGCTGCCTAACAGCGTGCGCCAGCCTGCTTCAGCAAGAAAACGCGCTTTAGCGACAAATTTGCCTTTGGCAATGTCCAGTTCGATAACACACTTGCGGAACACCGCAt                                       <  2:1776221/286‑1 (MQ=255)
                                                                                                                                                                                                                                          ttCAGATCTTTATCCTGCACAAAGCGCGCGATCCCGGTCATCGCCGAAAGCAGTGTTGCATCGGTAAAATGGCGCGGCGGCTGGGTTTGCCGCTCTACCACTTCACCTTTTTCACACAGCAACTCATCGCCTTTCGCCACCACAGGCAGTGGCGTGCCGTCGTTTTCTTCATCGCGCTCTTTGCTGCCTAACAGCGTGCGCCAGCCTGCTTCAGCGAGAAAACGCGCTTTAGCGACAAATTTGCCTTTGGCAATGTCCAGTTCGATAACACACTTGCGGAACACCGCAt                                       <  1:996384/289‑1 (MQ=255)
                                                                                                                                                                                                                                           tCAGATCTTTATCCTGCACAAAGCGCGCGATCCCGGTCATCGCCGAAAGCAGTGTTGCATCGGTAAAATGGCGCGGCGGCTGGGTTTGCCGCTCTACCACTTCACCTTTTTCACACAGCAACTCATAGCCTTTAGCCACCACAGGCAGTGGCGTGCCGTCGTTTTCTTCATCGCGCTCTTTGCTGCCTAACAGCGTTCGCCAGCCTGCTTCCGCAACAAAACGCGCTTTAGCGACAAATTTTCCTTTGGCAATGTCCAGTTCGATAACAAACTTGCGGGACACCTCAt                                       >  2:451029/1‑288 (MQ=255)
                                                                                                                                                                                                                                             aGATCTTTATCCTGCACAAAGCGCGCGATCCCGGTCATCGCCGAAAGCAGTGTTGCATCGGTAAAATGGCGCGGTGGCTGGGTTTGCCGCTCTACCACTTCACCTTTTTCACACAGCAACTCATCGCCTTTCGCCACCACAGGCAGTGGCGTGCCGTCGTTTTCTTCATCGCGCTCTTTGCTGCCTAACAGCg                                                                                                                                    <  1:1196403/193‑1 (MQ=255)
                                                                                                                                                                                                                                               aTCTTTATCCTGCACAAAGCGCGCGATCCCGGTCATCGCCGAAAGCAGTGTTGCATCGGTAAAATGGCGCGGCGGCTGGGTTTGCCGCTCTACCACTTCACCTTTTTCACACAGCAACTCATCGCCTTTCGCCACCACAGGCAGTGGCGTGCCGTCGTTTTCTTCATCGCGCTCTTTGCTGCCTAACAGCGTGCGCCAGCCTGCTTCAGCAAGAAAACGCGCTTTAGCGACAAATTTGCCTTTGGCAATGTCCAGTTCGATAACACACTTGCGGAACACCGCATCCgg                                   >  1:956500/1‑288 (MQ=255)
                                                                                                                                                                                                                                                    tATCCTGCACAAAGCGCGCGATCCCGGTCATCGCCGAAAGCAGTGTTGCATCGGTAAAATGGCGCGGCGGCTGGGTTTGCCGCTCTACCACTTCACCTTTTTCACACAGCAACTCATCGCCTTTCGCCACCACAGGCAGTGGCGTGCCGTCGTTTTCTTCATCGCGCTCTTTGCTGCCTAACAGCGTGCGCCAGCCTGCTTCAGCAAGAAAACGCGCTTTAGCGACAAATTTGCCTTTGGCAATGTCCAGTTCGATAACACACTTGCGGAACACCGCATCCGGGCAGaa                             <  1:1041079/289‑1 (MQ=255)
                                                                                                                                                                                                                                                    tATCCTGCACAAAGCGCGCGATCCCGGTCATCGCCGAAAGCAGTGTTGCATCGGTAAAATGGCGCGGCGGCTGGGTTTGCCGCTCTACCACTTCACCTTTTTCACACAGCAACTCATCGCCTTTCGCCACCACAGGCAGTGGCGTGCCGTCGTTTTCTTCATCGCGCTCTTTGCTGCCTAACAGCGTGCGCCAGCCTGCTTCAGCAAGAAAACGCGCTTTAGCGACAAATTTGCCTTTGGCAATGTCCAGTTCGATAACACACTTGCGGAACACCGCATCCGGGCAGaa                             >  1:219806/1‑289 (MQ=255)
                                                                                                                                                                                                                                                         tGCACAAAGCGCGCGATCCCGGTCATCGCCGAAAGCAGTGTTGCATCGGTAAAATGGCGCGGCGGCTGGGTTTGCCGCTCTACCACTTCACCTTTTTCACACAGCAACTCATCGCCTTTCGCCACCACAGGCAGTGGCGTGCCGTCGTTTTCTTCATCGCGCTCTTTGCTGCCTAACAGCGTGCGCCAGCCTGCTTCAGCAAGAAAACGCGCTTTAGCGACAAATTTGCCTTTGGCAATGTCCAGTTCGATAACACACTTGCGGAACACCGCATCCGGGCAGAATTGCa                        <  1:317086/289‑1 (MQ=255)
                                                                                                                                                                                                                                                         tGCACAAAGCGCGCGATCCCGGTCATCGCCGAAAGCAGTGTTGCATCGGTAAAATGGCGCGGCGGCTGGGTTTGCCGCTCTACCACTTCACCTTTTTCACACAGCAACTCATCGCCTTTCGCCACCACAGGCAGTGGCGTGCCGTCGTTTTCTTCATCGCGCTCTTTGCTGCCTAACAGCGTGCGCCAGCCTGCTTCAGCAAGAAAACGCGCTTTAGCGACAAATTTGCCTTTGGCAATGTCCAGTTCGATAACACACTTGCGGAACACCGCATCCGGGCAGAATTGCa                        <  2:600613/289‑1 (MQ=255)
                                                                                                                                                                                                                                                           cacaAAGCGCGCGATCCCGGTCATCGCCGAAAGCAGTGTTGCATCGGTAAAATGGCGCGGCGGCTGGGTTTGCCGCTCTACCACTTCACCTTTTTCACACAGCAACTCATCGCCTTTCGCCACCACAGGCAGTGGCGTGCCGTCGTTTTCTTCATCGCGCTCTTTGCTGCCTAACAGCGTGCGCCAGCCTGCTTCAGCAATAAAACGCGCTTTAGAGACAAATTTGCCTTTGGCAATGTCCAGTTCGATAACACACTTGCGGAACACCGCATCCGGGCAGAATTGCATc                      >  2:1990388/1‑289 (MQ=255)
                                                                                                                                                                                                                                                           cacaAAGCGCGCGATCCCGGTCATCGCCGAAAGCAGTGTTGCATCGGTAAAATGGCGCGGCGGCTGGGTTTGCCGCTCTACCACTTCACCTTTTTCACACAGCAACTCATCGCCTTTCGCCACCACAGGCAGTGGCGTGCCGTCGTTTTCTTCATCGCGCTCTTTGCTGCCTAACAGCGTGCGCCAGCCTGCTTCAGCAAGAAAACGCGCTTTAGCGACAATTTTGCCTTTGGCAATGTCCAGTTCGATAACACACTTGCGGAACACCGCATCCGGGCAGAATTGCATc                      >  2:1040572/1‑289 (MQ=255)
                                                                                                                                                                                                                                                           cacaAAGCGCGCGATCCCGGTCATCGCCGAAAGCAGTGTTGCATCGGTAAAATGGCGCGGCGGCTGGGTTTGCCGCTCTACCACTTCACCTTTTTCACACAGCAACTCATCGCCTTTCGCCACCACAGGCAGTGGCGTGCCGTCGTTTTCTTCATCGCGCTCTTTGCTGCCTAACAGCGTGCGCCAGCCTGCTTCAGCAAGAAAACGCGCTTTAGCGACAAATTTGcc                                                                                   <  1:250437/228‑1 (MQ=255)
                                                                                                                                                                                                                                                           cacaAAGCGCGCGATCCCGGTCATCGCCGAAAGCAGTGTTGCATCGGTAAAATGGCGCGGCGGCTGGGTTTGCCGCTCTACCACTTCACCTTTTTCACACAGCAACTCATCGCCTTTCGCCACCACAGGCAGTGGCGTGCCGTCGTTTTCTTCATCGCGCTCTTTGCTGCCTAACAGCGTGCGCCAGCCTGCTTCAGCAAGAAAACGCGCTTTAGCGACAAATTTGCCtt                                                                                 >  2:1729297/1‑230 (MQ=255)
                                                                                                                                                                                                                                                           cacaAAGCGCGCGATCCCGGTCATCGCCGAAAGCAGTGTTGCATCGGTAAAATGGCGCGGCGGCTGGGTTTGCCGCTCTACCACTTCACCTTTTTCACACAGCAACTCATCGCCTTTCGCCACCACAGGCAGTGGCGTGCCGTCGTTTTCTTCATCGCGCTCTTTGCTGCCTAACAGCGTGCGCCAGCCTGCTTCAGCAAGAAAACGCGCTTTAGCGACAAATTTGCCTTTGGCAATGTCCAGTTCGATAACACACTTGCGGAACACCGCATCCGGGCAGAAtt                           >  1:439398/1‑284 (MQ=255)
                                                                                                                                                                                                                                                              aaaGCGCGCGATCCCGGTCATCGCCGAAAGCAGTGTTGCATCGGTAAAATGGCGCGGCGGCTGGGTTTGCCGCTCTACCACTTCACCTTTTTCACACAGCAACTCATCGCCTTTCGCCACCACAGGCAGTGGCGTGCCGTCGTTTTCTTCATCGCGCTCTTTGCTGCCTAACAGCGTGCGCCAGCCTGCTTCAGCAAGAAAACGCGCTTTAGCGACAAATTTGCCTTTGGCAATGTCCAGTTCGATAACACACTTGCGGAACACCGCATCCGGGCAGAATTGCATCAGa                   >  1:756896/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                aGCGCGCGATCCCGGTCATCGCCGAAAGCAGTGTTGCATCGGTAAAATGGCGCGGCGGCTGGGTTTGCCGCTCTACCACTTCACCTTTTTCACACAGCAACTCATCGCCTTTCGCCACCACAGGCAGTGGCGTGCCGTCGTTTTCTTCATCGCGCTCTTTGCTGCCTAACAGCCTCCGCCAGCCTGCTTCAGCCAGAAAACGCCCTTTAGCGACAAATTTCCCTTTGGCAATGTCCAGTTCGATAAACCACTTGCCGAACACCGCATCCGGCCAGAATTCACTCAGAtc                 >  2:2617750/1‑288 (MQ=255)
                                                                                                                                                                                                                                                                aGCGCGCGATCCCGGTCATCGCCGAAAGCAGTGTTGCATCGGTAAAATGGCGCGGCGGCTGGGTTTGCCGCTCTACCACTTCACCTTTTTCACACAGCAACTCATCGCCTTTCGCCACCACAGGCAGTGGCGTGCCGTCGTTTTCTTCATCGCGCTCTTTCCTGCCTAACAGCGTGCGCCAGCCTGCTTCAGCAAGAACACGCGCTTTAGCGACCAATTTGCCTTTGGCAATGTCCAGTTCGACAACACACTTGCGGAACAGCGCATCCGGGCAGAATTGctcacgat                  >  2:71701/1‑281 (MQ=255)
                                                                                                                                                                                                                                                                     gcgATCCCGGTCATCGCCGAAAGCAGTGTTGCATCGGTAAAATGGCGCGGCGGCTGGGTTTGCCGCTCTACCACTTCACCTTTTTCACACAGCAACTCATCGCCTTTCGCCACCACAGGCAGTGGCGTGCCGTCGTTTTCTTCATCGCGCTCTTTGCTGCCTAACAGCGTGCGCCAGCCTGCTTCAGCAAGAAAACGCGCTTTAGCGACAAATTTGCCTTTGGCa                                                                            >  2:1227921/1‑225 (MQ=255)
                                                                                                                                                                                                                                                                      cgATCCCGGTCATCGCCGAAAGCAGTGTTGCATCGGTAAAATGGCTCGGCGGCTGGGTTTTCCGCTCTACCACTTCACCTTTTTCACACAGCAACTCATCGCCTTTCGCCACCACAGGCAGTGGCGTGCCGTCGTTTTCTTCATCGCGCTCTTTGCTGCCTAACAGCGTGCCCCACCCTGCTTCCGCAAGAAAACGCGCTTTACCGACCAATTTGCCTTTGGCAATGTCCAGTTCGATAACACCAGTGCGGAACACCGCATCCGGGCAGAATTTCATCCGATACTGACg           >  2:159907/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                            cGGTCATCGCCGAAAGCAGTGTTGCATCGGTAAAATGGCGCGGCGGCTGGGTTTGCCGCTCTACCACTTCACCTTTTTCACACAGCAACTCATCGCCTTTCGCCACCACAGGCAGTGGCGTGCCGTCGTTTTCTTCATCGCGCTCTTTGCTGCCTAACAGCGTGCGCCAGCCTGCTTCAGCAAGAAAACGCGCTTTAGCGACAAATTTGCCTTTGGCAATGTCCAGTTCGATAACACACTTGCGGAACACCGCATCCGGGCAGAATTGCATCAGATACTGACGGGCaa      >  1:2621613/1‑288 (MQ=255)
                                                                                                                                                                                                                                                                            cGGTCATCGCCGAAAGCAGTGTTGCATCGGTAAAATGGCGCGGCGGCTGGGTTTGCCGCTCTACCACTTCACCTTTTTCACACAGCAACTCATCGCCTTTCGCCACCACAGGCAGTGGCGTGCCGTCGTTTTCTTCATCGCGCTCTTTGCTGCCTAACAGCGTGCGCCAGCCTGCTTCAGCAAGAAAACGCGCTTTAGCGACAAATTTGCCTTTGGCAATGTCCAGTTCGATAACACACTTGCGGAACACCGCATCCGGGCAGAATTGCATCAGATACTGACGGGCAAt     <  1:482827/289‑1 (MQ=255)
                                                                                                                                                                                                                                                                            cGGTCATCGCCGAAAGCAGTGTTGCATCGGTAAAATGGCGCGGCGGCTGGGTTTGCCGCTCTACCACTTCACCTTTTTCACACAGCAACTCATCGCCTTTCGCCACCACAGGCAGTGGCGGGCCGTCGTTTTCTTCATCGCGCTCTTTGCTGCCTAACAGCGTGCGCCAGCCTGCTTCAGCAAGAAAACGCGCTTTAGCGACAAATTTGCCTTTGGCAATGTCCAGTTCGATAACACACTTGCGGAACACCGCATCCGGGCAGAATTGCATCAGATACTGACGGGCAAt     <  1:2267184/289‑1 (MQ=255)
                                                                                                                                                                                                                                                                             ggTCATCGCCGAAAGCAGTGTTGCATCGGTAAAATGGCGCGGCGGCTGGGTTTGCCGCTCTACCACTTCACCTTTTTCACACAGCAACTCATCGCCTTTCGCCACCACAGGCAGTGGCGTGCCGTCGTTTTCTTCATCGCGCTCTTTGCTGCCTAACAGCGTGCGCCAGCCTGCTTCAGCAAGAAAACGCGCTTTAGCGACAAATTTGCCTTTGGCAATGTCCAGTTCGATAACACACTTGCGGAACACCGCATCCGGGCAGAATTGCATCAGATACTGACGGGCAATc    <  1:2294041/289‑1 (MQ=255)
                                                                                                                                                                                                                                                                             ggTCATCGCCGAAAGCAGTGTTGCATCGGTAAAATGGCGCGGCGGCTGGGTTTGCCGCTCTACCACTTCACCTTTTTCACACAGCAACTCATCGCCTTTCGCCACCACAGGCAGTGGCGTGCCGTCGTTTTCTTCATCGCGCTCTTTGCTGCCTAACAGCGTGCGCCAGCCTGCTTCAGCAAGAAAACGCGCTTTAGCGACAAATTTGCCTTTGGCAATGTCCAGTTCGATAACACACTTGCGGAACACCGCATCCGGGCAGAATTGCATCAGATACTGACGGGCAATc    <  1:1280893/289‑1 (MQ=255)
                                                                                                                                                                                                                                                                               tCATCGCCGAAAGCAGTGTTGCATCGGTAAAATGGCGCGGCGGCTGGGTTTGCCGCTCTACCACTTCACCTTTTTCACACAGCAACTCATCGCCTTTCGCCACCACAGGCAGTGGCGTGCCGTCGTTTTCTTCATCGCGCTCTTTGCTGCCTAACAGCGTGCGCCAGCCTGCTTCAGCAAGAAAACGCGCTTTAGCGACAAATTTGCCTTTGGCAATGTCCAGTTCGATAACACACTTGCGGAACACCGCATCCGGGCAGAATTGCATCAGATACTGACGGGCAATCa   <  1:622384/288‑1 (MQ=255)
                                                                                                                                                                                                                                                                                      |||                                                                                                                                                                                                                                                                                       
AAGTCCTGATAGCGACACTGCTTTTCGCTGATTTGCGTCAGCACGCTTTCCCAGTGCGCGGTCATGTCCGGTCGCGTCGCCATCTCCGGCAGGCTATGGAATAGCGCTTTTCCGGCGTCGGTGGAGTGGATATAGCGCCCTTTTTTGGTCAGGAAACCACGCTTGAACAACAGTTCAATAATCCCGGCACGCGTTGCCTCTGTCCCCAGACCATCGGTCGCACGGAGGATCTTTTTCAGATCTTTATCCTGCACAAAGCGCGCGATCCCGGTCATCGCGCTAAGCAGTGTTGCATCGGTAAAATGGCGCGGCGGCTGGGTTTGCCGCTCTACCACTTCACCTTTTTCACACAGCAACTCATCGCCTTTCGCCACCACAGGCAGTGGCGTGCCGTCGTTTTCTTCATCGCGCTCTTTGCTGCCTAACAGCGTGCGCCAGCCTGCTTCAGCAAGAAAACGCGCTTTAGCGACAAATTTGCCTTTGGCAATGTCCAGTTCGATAACACACTTGCGGAACACCGCATCCGGGCAGAATTGCATCAGATACTGACGGGCAATCAG  >  CP042583/1527245‑1527804

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A