Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A6 F210 I1 R1 4928 340.1 5480506 96.9% 5310610 252.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA CP042583 1,529,489 3 bp→TGA intergenic (–/–) – / – –/–

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0425831,529,4890AT100.0% 772.6 / NA 323intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base T (171/152);  total (171/152)
*CP0425831,529,4900CG99.1% 761.6 / NA 323intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base C (0/0);  major base G (169/151);  minor base T (2/1);  total (171/152)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*CP0425831,529,4910TA99.7% 753.4 / NA 321intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base T (0/0);  major base A (168/151);  minor base G (1/0);  total (170/151)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 323 total aligned reads displayed.

ATCAGATGACCGTAGCTGGCAAAGTTACGTTCAGTGCCGCCAGGTACTGCGCCCAACTTAATGTACTCTTCAACACCGGGGAGTTTCGGGATCGCTTCATAGTCGACGCGTGCCTGCACACCAGCCCCCTGACACATTTCGCTCAAGTGGCCCAG‑CAGACCAAAGCCCGTAACGTCGGTCATCGCTTTTACGCCTTCGATGTTGGCAAAGGACGCGCCTGCGATGTTCATCCGGCACATCACTTCCGTCGCCAGTCCCTGATGTTCTGGTTTCAACAGACTTTTTTTCTCAGCCGTGGTAAGAACGCCGATCCCCAGCGGTTTCGTCAGGAACAGTTTGCATCCGGCTTGTGCGGTACTGTTTTTCTTCACCCGCTCGGTCGGTACGATCCCCGTTACCGCCAGACCAAAAATCGGCTCCGGCGCATCGATGGAGTGACCGCCAGCCAGCGCAATACCCGCCTGACGACATGCATAGCGTCCACCTTCGGTCACTTCGCGGGCAATTTCTGGGGAAAGTTTGTTAATCGGCCAGCCGAGGATCGCAATCGCCATAATCGG  >  CP042583/1529211‑1529770
                                                                                                                                                                                                                                                                                       |||                                                                                                                                                                                                                                                                                       
aTCAGGTGACCGAAGCTGGCAAAGTTACGTTACGTGCCGCCAGGTACTGCGCCCAACTTAATGTACTCTTCAACCCCGGGGGGTTTCGGGATCGCTTCATAGTCGACGCGTGCCTGCACACCAGCCCCCTGACACATTTCGCTCAAGTGGCCCAG‑CAGACCAAAGCCCGTAACGTCGGTCATCGCTTTTACGCCTTCGATGTTGGCAAAGGACGCGCCTGCGATGTTCATCCGGCACATCACTTCCGTCGCCAGTCCCTGATGTTCTGGTTTCAACAGTGATTTTTtct                                                                                                                                                                                                                                                                                 <  2:1447639/289‑1 (MQ=255)
       gACCGTAGCTGGCAAAGTTACGTTCAGTGCCGCCAGGTACTGCGCCCAACTTAATGTACTCTTCAACACCGGGGAGTTTCGGGATCGCTTCATAGTCGACGCGTGCCTGCACACCAGCCCCCTGACACATTTCGCTCAAGTGGCCCAG‑CAGACCAAAGCCCGTAACGTCGGTCATCGCTTTTACGCCTTCGATGTTGGCAAAGGACGCGCCTGCGATGTTCATCCGGCACATCACTTCCGTCGCCAGTCCCTGATGTTCTGGTTTCAACAGTGATTTTTTCTCAGCCGt                                                                                                                                                                                                                                                                          <  1:108012/289‑1 (MQ=255)
            tAGCTGGCAAAGTTACGTTCAGTGCCGCCAGGTACTGCGCCCAACTTAATGTACTCTTCAACACAGGGGAGTTTCGGGATCGCTTCATAGTCGACGCGTGCCTGCACACCAGCCCCCTGACCCATTTCGCTCAAGTGGCCCAG‑CAGACCCAAGCACGTAACGTCGGTCATCGCTTTTACGCCTTAGCTGTTGGCAAAGGACGGGCCTGCGATGTTCATCCGGCACATCACTTCCGTCGCCAGACCCTGATGTTCTGGTTTCAACAATGCTTTTTTCTTGGCCTTGGTaa                                                                                                                                                                                                                                                                     >  2:1641451/1‑289 (MQ=255)
              gCTGGCAAAGTTACGTTCAGTGCCGCCAGGTACTGCGCCCAACTTAATGTACTCTTCAACACCGGGGAGTTTCGGGATCGCTTCATAGTCTCCGCGTGCCTGCACACCAGCCCCCTGACACATTTCGCTCAAGTGGCCCAG‑CAGACCAAAGCCCGTAACGTCGGTCATCCCTTTTACGCCATCGATGTTGGCAAAGGAAGCACCAGCGATGTTCATCCGGCACATCACGTCCGTCGCCAGTCCCTGATGTTCTGGTTTCCACAGTTGTTTTTTGTCAGCCTGGGTaata                                                                                                                                                                                                                                                                   >  2:1679541/1‑287 (MQ=255)
                   cAAAGTTACGTTCAGTGCCGCCAGGTACTGCGCCCAACTTAATGTACTCTTCAACACCGGGGAGTTTCGGGATCGCTTCATAGTCGACGCGTGCCTGCACACCAGCCCCCTGACACATTTCGCTCAAGTGGCCCAG‑CAGACCAAAGCCCGTAACGTCGGTCATCGCTTTTACGCCTTCGATGTTGGCAAAGGACGCGCCTGCGATGTTCATCCGGCACATAACTTCCGTCGCCAGTCCCTGATGTTCTGGTTTCAACAGTGATTTTTTCTCAGCCGTGGTAAGAACGcc                                                                                                                                                                                                                                                              >  1:2065435/1‑289 (MQ=255)
                    aaaGTTACGTTCAGTGCCGCCAGGTACTGCGCCCAACTTAATGTACTCTTCAACACCGGGGAGTTTCGGGATCGCTTCATAGTCGACGCGTGCCTGCACACCAGCCCCCTGACACATTTCGCTCAAGTGGCCCAG‑CAGACCAAAGCCCGTAACGTCGGTCATCGCTTTTACGCCTTCGATGTTGGCAAAGGACGCGCCTGCGATGTTCATCCGGCACATCACTTCCGTCGCCAGTCCCTGATGTTCTGGTTTCAACAGTGATTTTTTCTCAGc                                                                                                                                                                                                                                                                             <  1:2631159/273‑1 (MQ=255)
                            gTTCAGTGCCGCCAGGTACTGCGCCCAACTTAATGTACTCTTCAACACCGGGGAGTTTCGGGATCGCTTCATAGTCGACGCGTGCCTGCACACCAGCCCCCTGACACATTTCGCTCAAGTGGCCCAG‑CAGACCAAAGCCCGTAACGTCGGTCATCGCTTTTACGCCTTCGATGTTGGCAAAGGACGCGCCTGCGATGTTCATCCGGCACATCACTTCCGTCGCCAGTCCCTGATGTTCTGGTTTCAACAGTGATTTTTTCTCAGCCGTGGTAAGAACGCCGATCCCCAg                                                                                                                                                                                                                                                     <  1:460176/289‑1 (MQ=255)
                                   gccgccAGGTACTGCTCCCAACTTAATTTACTCTTCAACACCGGGGAGTTTCGGGATCGCTTCATAGTCGACGCGTGCCTGCACACCAGCCCCCTGACACATTTCGCTCAAGTGGCCCAG‑CAGACCAAAGCCCGTAACGTCGGTCATCGCTTTTACGCCTTCGATGTTGGCAAAGGACGCGCCTGCGATGTTCATCCGGCACATCACTTCCGTCGCCAGTCCCTGATGTTCTGGTTTCAACAGTGATTTTTTCTCAGCCGTGGTAAGAACGCCGATCCCCAGCGGtt                                                                                                                                                                                                                                                <  1:1028377/287‑1 (MQ=255)
                                   gccgccAGGTACTGCGCCCAACTTAATGTACTCTTCAACACCGGGGGGTTTCGGGATCGCTTCATAGTCGACGCGTGCCTGCACACCAGCCCCCTGACACATGTCGCTCAAGTGGCCCAG‑CAGACCAAAGCCCGTAACGTCGGTCATCGCTTTTACGCCTTCGATGTTGGCAAAGGACGCGCCTGCGATGTTCATCCGGCACATCACTTCCGTCGCCAGTCCCTGATGTTCTGGTTTCAACAGTGATTTTTTCTCAGCCGTGGTAAGAACGCCGATCCCCAGCGGTTTc                                                                                                                                                                                                                                              <  1:1679541/289‑1 (MQ=255)
                                            tACTGCGCCCAACTTAATGTACTCTTCAACACCGGGGAGTTTCGGGATCGCTTCATAGTCGACGCGTGCCTGCACACCAGCCCCCTGACACATTTCGCTCAAGTGGCCCAG‑CAGACCAAAGCCCGTAACGTCGGTCATCGCTTTTACGCCTTCGATGTTGGCAAAGGACGCGCCTGCGATGTTCATCCGGCACATCACTTCCGTCGCCAGTCCCTGATGTTCTGGTTTCAACAGTGATTTTTTCTCAGCCGTGGTAAGAACGCCGATCCCCAGCGGTTTCGTCAGGAAc                                                                                                                                                                                                                                     >  1:383231/1‑289 (MQ=255)
                                            tACTGCGCCCAACTTAATGTACTCTTCAACACCGGGGAGTTTCGGGATCGCTTCATAGTCGACGCGTGCCTGCACACCAGCCCCCTGACACATTTCGCTCAAGTGGCCCAG‑CAGACCAAAGCCCGTAACGTCGGTCATCGCTTTTACGCCTTCGATGTTGGCAAAGGACGCGCCTGCGATGTTCATCCGGCACATCACTTCCGTCGCCAGTCCCTGATGTTCTGGTTTCAACAGTGATTTTTTCTCAGCCGTGGTAAGAACGCCGATCCCCAGCGGTTTCGTCAGGAAc                                                                                                                                                                                                                                     >  1:2206201/1‑289 (MQ=255)
                                                   cccAACTTAATGTACTCTTCAACACCGGGGAGTTTCGGGATCGCTTCATAGTCGACGCGTGCCTGCACACCAGCCCCCTGACACATTTCGCTCAAGTGGCCCAG‑CAGACCAAAGCCCGTAACGTCGGTCATCGCTTTTACGCCTTCGATGTTGGCAAAGGACGCGCCTGCGATGTTCATCCGGCACATCACTTCCGTCGCCAGTCCCTGATGTTCTGGTTTCAACAGTGATTTTTTCTCAGCCGTGGTAAGAACGCCGATCCCCAGCGGTTTCGTCAGGAACAGTTTg                                                                                                                                                                                                                               >  2:1987978/1‑288 (MQ=255)
                                                      aaCTTAATGTACTCTTCAACACCGGGGAGTTTCGGGATCGCTTCATAGTCGACGCGTGCCTGCACACCAGCCCCCTGACACATTTCGCTCAAGTGGCCCAG‑CAGACCAAAGCCCGTAACGTCGGTCATCGCTTTTACGCCTTCGATGTTGGCAAAGGACGCGCCTGCGATGTTCATCCGGCACATCACTTCCGTCCCCAGTCCCTGATGTTCTGGTTCCAACAGTGATTTTTTCTCCGCCGTGGTAAGAACGCCCATCCCCAGCGGTCTCGTCACGACCACTTTTCAt                                                                                                                                                                                                                            >  2:2157142/1‑288 (MQ=255)
                                                          tAATGTACGATTCAACACCGGTGAGTTTCGGGATCGCTTCATAGTCGACGCGTGCCTGCACACCAGCCCCCTGACACATTTCGCTCAAGTGGCCCAG‑CAGACCAAAGCCCGTAACGTCGGTCATCGCTTTGACGCCTTCGATGTTGGCAAAGGACGCGCCTGCGATGTTCATCCGGCACATCACTTCCGTCGCCAGTCCCTGATGTTCTGGTTTCAACAGTGATTTTTTCTCAGCCGTGGTAAGAACGCCGATCCCCAGCGGTTTCGTCAGGAACAGTTTGCATCCGGc                                                                                                                                                                                                                       <  2:2305146/289‑1 (MQ=255)
                                                                aCTCTTCAACACCGGGGAGTTTCGGGATCGCTTCATAGTCGACGCGTGCCTGCACACCAGCCCCCTGACACATTTCGCTCAAGTGGCCCAG‑CAGACCAAAGCCCGTAACGTCGGTCATCGCTTTTACGCCTTCGATGTTGGCAAAGGACGCGCCTGCGATGTTCATCCGGCACATCACTTCCGTCGCCAGTCCCTGATGTTCTGGTTTCAACAGTGATTTTTTCTCAGCCGTGGTAAGAACGCCGATCCCCAGCGGTTTCGTCAGGAACAGTTTGCATCCGGCTTGTGc                                                                                                                                                                                                                 >  2:115724/1‑289 (MQ=255)
                                                                  tctTCAACACAGGGGAGTTGCGGGATCTCTTCATAGTCGACGCGTGCCTGCACACCAGCCCCCTGACACATTTCGCTCAAGTGGCCCAG‑CAGACCAAAGCCCGTAACGTCGGTCATCGCGTTTACGCCTTCGATGTTGGCAAAGGAAGCGCTTGCGATGTTCATCCGGCACATCACTTCAGTTGCCAGTCCCTGATGGTCTGGTTTCAACAGTGATTTTTTCTCAGCCGTGGTAAGAATGCCGATCCCCAGCGGTTTCGTAAGGAACAGTTTGAATCCGGCTTGTGCgg                                                                                                                                                                                                               >  1:279346/1‑289 (MQ=255)
                                                                  actccacagccGCGGCGTGTCGGGATCGCGTCATAGTCGACGCGTGCCAGCACACCAGCCCCCTGACACATTTCGCTCCAGTGGCCCAG‑CCGACCAAAGCCCGTAACGTCGGTCATCGCTTTTACGCCTTCGATGTTGGCAAAGGACGCGCCTGCGATGTTCATCCGGCACATCACTTCCGTCGCCAGTCCCTGATGTTCTGGTTTCAACAGTGATTTTTTCTCAGCCGTGGTAAGAACGCCGATCCCCAGCGGTTTCGTCAGGAACAGTTTGCATCCGGCTTGTGCgg                                                                                                                                                                                                               <  2:1816420/280‑1 (MQ=255)
                                                                   ctTCAACACCGGGGAGTTTCGGGATCGCTTCATAGTCGACGCGTGCCTGCACACCAGCCCCCTGACACATTTCGCTCAAGTGGCCCAG‑CAGACCAAAGCCCGTAACGTCGGTCATCGCTTTTACGCCTTCGATGTTGGCAAAGGACGCGCCTGCGATGTTCATCCGGCACATCACTTCCGTCGCCAGTCCCTGATGTTCTGGTTTCAACAGTGATTTTTTCTCAGCCGTGGTAAGAACGCCGATCCCCAGCGGTTTCGTCAGGAACAGTTTGCATCCGGCTTGTGCGGt                                                                                                                                                                                                              >  1:1750279/1‑289 (MQ=255)
                                                                        acacCGGGGAGTTTCGGGATCGCTTCATAGTCGACGCGTGCCTGCACACCAGCCCCCTGACACATTTCGCTCAAGTGGCCCAG‑CAGACCAAAGCCCGTAACGTCGGTCATCGCTTTTACGCCTTCGATGTTGGCAAAGGACGCGCCTGCGATGTTCATCCGGCACATCACTTCCGTCGCCAGTCCCTGATGTTCTGGTTTCAACAGTGATTTTTTCTCAGCCGTGGTAAGAACGCCGATCCCCAGCGGTTTCGTCAGGAACAGTTTGCATCCGGCTTGTGCGGTACTGt                                                                                                                                                                                                         <  1:752764/289‑1 (MQ=255)
                                                                         cacCGGGGAGTTTCGGGATCGCTTCATAGTCGACGCGTGCCTGCACACCAGCCCCCTGACACATTTCGCTCAAGTGGCCCAG‑CAGACCAAAGCCCGTAACGTCGGTCATCGCTTTTACGCCTTCGATGTTGGCAAAGGACGCGCCTGCGATGTTCATCCGGCACATCACTTCCGTCGCCAGTCCCTGATGTTCTGGTTTCAACAGTGATTTTTTCTCAGCCGTGGTAAGAACGCCGATCCCCAGCGGTTTCGTCAGGAACAGTTTGCATCCGGCTTGTGCGGTACTGtt                                                                                                                                                                                                        >  1:1848182/1‑289 (MQ=255)
                                                                              gggAGTTTCGGGATCGCTTCATAGTCGACGCGTGCCTGCACACCAGCCCCCTGACACATTTCGCTCAAGTGGCCCAG‑CAGACCAAAGCCCGTAACGTCGGTCATCGCTTTTACGCCTTCGATGTTGGCAAAGGACGCGCCTGCGATGTTCATCCGGCACATCACTTCCGTCGCCAGTCCCTGATGTTCTGGTTTCAACAGTGATTTTTTCTCAg                                                                                                                                                                                                                                                                              >  1:414171/1‑214 (MQ=255)
                                                                              gggAGTTTCGGGATCGCTTCATAGTCGACGCGTGCCTGCACACCAGCCCCCTGACACATTTCGCTCAAGTGGCCCAG‑CAGACCAAAGCCCGTAACGTCGGTCATCGCTTTTACGCCTTCGATGTTGGCAAAGGACGCGCCTGCGATGTTCATCCGGCACATCACTTCCGTCGCCAGTCCCTGATGTTCTGGTTTCAACAGTGATTTTTTCTCAg                                                                                                                                                                                                                                                                              <  2:414171/214‑1 (MQ=255)
                                                                              gggAGTTTCGGGATCGCTTCATAGTCGACGCGTGCCTGCACACCAGCCCCCTGACACATTTCGCTCAAGTGGCCCAG‑CAGACCAAAGCCCGTAACGTCGGTCATCGCTTTTACGCCTTCGATGTTGGCAAAGGACGCGCCTGCGATGTTCATCCGGCACATCACTTCCGTCGCCAGTCCCTGATGTTCTGGTTTCAACAGTGATTTTTTCTCAGCCGTGGTAAGAACGCCGATCCCCAGCGGTTTCGTc                                                                                                                                                                                                                                           >  1:927652/1‑249 (MQ=255)
                                                                              gggAGTTTCGGGATCGCTTCATAGTCGACGCGTGCCTGCACACCAGCCCCCTGACACATTTCGCTCAAGTGGCCCAG‑CAGACCAAAGCCCGTAACGTCGGTCATCGCTTTTACGCCTTCGATGTTGGCAAAGGACGCGCCTGCGATGTTCATCCGGCACATCACTTCCGTCGCCAGTCCCTGATGTTCTGGTTTCAACAGTGATTTTTTCTCAGCCGTGGTAAGAACGCCGATCCCCAGCGGTTTCGTCTGGAACAGTTTGCATCCGGCTTGTGCGGTACTGGTTttct                                                                                                                                                                                                   >  1:1393433/1‑289 (MQ=255)
                                                                              gggAGTTTCGGGATCGCTTCATAGTCGACGCGTGCCTGCACACCAGCCCCCTGACACATTTCGCTCAAGTGGCCCAG‑CAGACCAAAGCCCGTAACGTCGGTCATCGCTTTTACGCCTTCGATGTTGGCAAAGGACGCGCCTGCGATGTTCATCCGGCACATCACTTCCGTCGCCAGTCCCTGATGTTCTGGTTTCAACAGTGATTTTTTCTCAGCCGTGGTAAGAACGCCGATCCCCAGCGGTTTCGTCAGGAACAGTTTGCATCCGGc                                                                                                                                                                                                                       <  2:1924643/269‑1 (MQ=255)
                                                                              gggAGTTTCGGGATCGCTTCATAGTCGACGCGTGCCTGCACACCAGCCCCCTGACACATTTCGCTCAAGTGGCCCAG‑CAGACCAAAGCCCGTAACGTCGGTCATCGCTTTTACGCCTTCGATGTTGGCAAAGGACGCGCCTGCGATGTTCATCCGGCACATCACTTCCGTCGCCAGTCCCTGATGTTCTGGTTTCAACAGTGATTTTTTCTCAGCCGTGGTAAGAACGCCGATCCCCAGCGGTTTCGTCAGGAACAGTTTGCATCCGGCTTGTGCGGTACTGTTTttct                                                                                                                                                                                                   >  2:328502/1‑289 (MQ=255)
                                                                              gggAGTTTCGGGATCGCTTCATAGTCGACGCGTGCCTGCACACCAGCCCCCTGACACATTTCGCTCAAGTGGCCCAG‑CAGACCAAAGCCCGTAACGTCGGTCATCGCTTTTACGCCTTCGATGTTGGCAAAGGACGCGCCTGCGATGTTCATCCGGCACATCACTTCCGTCGCCAGTCCCTGATGTTCTGGTTTCAACAGTGATTTTTTCTCAGCCGTGGTAAGAACGCCGATCCCCAGCGGTTTCGTCAGGAACAGTTTGCATCCGGCTTGTGCGGTACTGTTTttct                                                                                                                                                                                                   >  1:1716640/1‑289 (MQ=255)
                                                                              gggAGTTTCGGGATCGCTTCATAGTCGACGCGTGCCTGCACACCAGCCCCCTGACACATTTCGCTCAAGTGGCCCAG‑CAGACCAAAGCCCGTAACGTCGGTCATCGCTTTTACGCCTTCGATGTTGGCAAAGGACGCGCCTGCGATGTTCATCCGGCACATCACTTCCGTCGCCAGTCCCTGATGTTCTGGTTTCAACAGTGATTTTTTCTCAGCCGTGGTAAGAACGCCGATCCCCAGCGGTTTCGGCAGGAACAGTTTGCATCCGGCTTGTGCGGTACTGTTTttct                                                                                                                                                                                                   >  2:776951/1‑289 (MQ=255)
                                                                                            cGCTTCAGAGTCGACGCGTGCCTGCACACCAGCCCCCTGACACATTTCGCTCAAGTGGCCCAG‑CAGACCAAAGCCCGTAACGTCGGTCATCGCTTTTACGCCTTCGATGTTGGCAAAGGACGCGCCTGCGATGTTCATCCGGCACATCACTTCCGTCGCCAGTCCCTGATGTTCTGGTTTCAACAGTGATTTTTTCTCAGCCGTGGTAAGAACGCCGATCCCCAGCGGTTTCGTCAGGAACAGTTTGCATCCGGCTTGTGCGGTACTGTTTTTCTTCACCCGCtcggtc                                                                                                                                                                                     <  1:1631102/289‑1 (MQ=255)
                                                                                              cTTCATAGTCGACGCGTGCCTGCACACCAGCCCCCTGACACATTTCGCTCAAGTGGCCCAG‑CAGACCAAAGCCCGTAACGTCGGTCATCGCTTTTACGCCTTCGATGTTGGCAAAGGACGCGCCTGCGATGTTCATCCGGCACATCACTTCCGTCGCCAGTCCCTGATGTTCTGGTTTCAACAGTGATTTTTTCTCAGCCGTGGTAAGAACGCCGATCCCCAGCGGTTTCGTCAGGAACAGTTTGCATCCGGCTTGTGCGGTACTGt                                                                                                                                                                                                         >  2:2221192/1‑267 (MQ=255)
                                                                                                      tCGACGCGGGCCTGACCACCAGCCCCCTGACACCTTTCGCTCAAGTGGCCCAG‑CAGACCAAAGCCCGTAACGTCGGTCATCGCTTTTACGCCTTCGATGTTGGCAAAGGACGCGCCTGCGATGTTCATCCGGCACATCACTTCCGTCGCCAGTCCCTGATGTTCTGGTTTCAACAGTGATTTTTTCTCAGCCGTGGTAAGAACGCCGATCCCCAg                                                                                                                                                                                                                                                     <  2:1110393/215‑1 (MQ=255)
                                                                                                        gACGCGTGCCTGCACATCAGCCCCCTGACACATTTCGCTCAAGTGGCCCAG‑CAGACCAAAGCCCGTAACGTCGGTCATCGCTTTTACGCCTTCGATGTTGGCAAAGGACGCGCCTGCGATGTTCATCCGGCACACCACTTCCGACGCCAGTCCCTGATGTTCTGGTTTCAACATTGATTTTTTCTCAGCCGTGGTAAGAACGCCTCTCCCAAGCGGTTTCGTCAGGAACAGTTTGAATCCGGCTTGTGCGGAACTGTTTTTCCTCACCCGCtcgtgcgccacgatacc                                                                                                                                                                          >  2:2353496/1‑274 (MQ=255)
                                                                                                        gACGCGTGCCTGCACACCAGCCCCCTGACACATTTCGCTCAAGTGGCCCAG‑CAGACCAAAGCCCGTAACGTCGGTCATCGCTTTTACGCCTTCGATGTTGGCAAAGGACGCGCCTGCGATGTTCATCCGGCACATCACTTCCGTCGCCAGTCCCTGATGTTCTGGTTTCAACAGTGATTTTTTCTCAGCCGTGGTAAGAACGCCGATCCCCAGCGGTTTCGTCAGGAACAGTTTGCATCCGGCTTGTGCGGTACTGTTTTTCTTCACCCGCTCGGTCGGTACGATcccc                                                                                                                                                                         >  1:313626/1‑289 (MQ=255)
                                                                                                        gACGCGTGCCTGCACACCAGCCCCCTGACACATTTCGCTCAAGTGGCCCAG‑CAGACCAAAGCCCGTAACGTCGGTCATCGCTTTTACGCCTTCGATGTTGGCAAAGGACGCGCCTGCGATGTTCATCCGGCACATCACTTCCGTCGCCAGTCCCTGATGTTCTGGTTTCAACAGTGATTTTTTCTCAGCCGTGGTAAGAACGCCGATCCCCAGCGGTTTCGTCAGGAACAGTTTGCATCCGGCTTGTGCGGTACTGTTTTTCTTCACCCGCTCGGTCGGTACGATccc                                                                                                                                                                          >  2:522299/1‑288 (MQ=255)
                                                                                                         aCGCGTGCCTGCACACCAGCCCCCTGACACATTTCGCTCAAGTGGCCCAG‑CAGACCAAAGCCCGTAACGTCGGTCATCGCTTTTACGCCTTCGATGTTGGCAAAGGACGCGCCTGCGATGTTCATCCGGCACATCACTTCCGTCGCCAGTCCCTGATGTTCTGGTTTCAACAGTGatttttt                                                                                                                                                                                                                                                                                   <  2:1247743/182‑1 (MQ=255)
                                                                                                         aCGCGTGCCTGCACACCAGCCCCCTGACACATTTCGCTCAAGTGGCCCAG‑CAGACCAAAGCCCGTAACGTCGGTCATCGCTTTTACGCCTTCGATGTTGGCAAAGGACGCGCCTGCGATGTTCATCCGGCACATCACTTCCGTCGCCAGTCCCTGATGTTCTGGTTTCAACAGTGATTTTTTCTCAGCCg                                                                                                                                                                                                                                                                           >  2:445048/1‑190 (MQ=255)
                                                                                                         aCGCGTGCCTGCACACCAGCCCCCTGACACATTTCGCTCAAGTGGCCCAG‑CAGACCAAAGCCCGTAACGTCGGTCATCGCTTTTACGCCTTCGATGTTGGCAAAGGACGCGCCTGCGATGTTCATCCGGCACATCACTTCCGTCGCCAGTCCCTGATGTTCTGGTTTCAACAGTGATTTTTTCTCAGCCGTGGTAAGAACGCCg                                                                                                                                                                                                                                                             <  2:911048/204‑1 (MQ=255)
                                                                                                         aCGCGTGCCTGCACACCAGCCCCCCGACACATTTCGCTCAAGTGGCCCAG‑CAGACCAAAGCCCGTAACGTCGGTCATCGCTTTTACGCCTTCGATGTTGGCAAAGGACGCGCCTGCGATGTTCATCCGGCACATCACTTCCGTCGCCAGTCCCTGATGTTCTGGTTTCAACAGTGATTTTTTCTCAGCCGTGGTAAGAACGCCGATCCCCAGCGGTTTCGTCAGGAACAGTTTGCATCCGGCTTGTGCGGTACTGTTTTTCTTCACCCGCCCGGGCGGTTCGATCCCCg                                                                                                                                                                        >  2:947703/1‑289 (MQ=255)
                                                                                                                         cAGCCCCCTGACACATTTCGCTCAAGTGGCCCAG‑CAGACCAAAGCCCGTAACGTCGGTCATCGCTTTTACGCCTTCGATGTTGGCAAAGGACGCGCCTGCGATGTTCATCCGGCACATCACTTCCGTCGCCAGTCCCTGATGTTCTGGTTTCAACAGTGATTTTTTCTCAGCCGTGGTAAGAACGCCGATCCCCAGCGGTTTCGTCAGGAACAGTTTGCATCCGGc                                                                                                                                                                                                                       >  2:877987/1‑226 (MQ=255)
                                                                                                                         cAGCCCCCTGACACATTTCGCTCAAGTGGCCCAG‑CAGACCAAAGCCCGTAACGTCGGTCATCGCTTTTACGCCTTCGATGTTGGCAAAGGACGCGCCTGCGATGTTCATCCGGCACATCACTTCCGTCGCCAGTCCCTGATGTTCTGGTTTCAACAGTGATTTTTTCTCAGCCGTGGTAAGAACGCCGATCCCCAGCGGTTTCGTCAGGAACAGTTTGCATCCGGc                                                                                                                                                                                                                       <  1:877987/226‑1 (MQ=255)
                                                                                                                         cAGCCCCCTGACACATTTCGCTCAAGTGGCCCAG‑CAGACCAAAGCCCGTAACGTCGGTCATCGCTTTTACGCCTTCGATGTTGGCAAAGGACGCGCCTGCGATGTTCATCCGGCACATCACTTCCGTCGCCAGTCCCTGATGTTCTGGTTTCAACAGTGATTTTTTCTCAGCCGTGGTAAGAACGCCGATCCCCAGCGGTTTCGTCAGGAACAGTTTGCATCCGGCTTGTGCgg                                                                                                                                                                                                               >  2:2512682/1‑234 (MQ=255)
                                                                                                                         cAGCCCCCTGACACATTTCGCTCAAGTGGCCCAG‑CAGACCAAAGCCCGTAACGTCGGTCATCGCTTTTACGCCTTCGATGTTGGCAAAGGACGCGCCTGCGATGTTCATCCGGCACATCACTTCCGTCGCCAGTCCCTGATGTTCTGGTTTCAACAGTGATTTTTTCTCAGCCGTGGTAAGAACGCCGATCCCCAGCGGTTTCGTCAGGAACAGTTTGCATCCGGCTTGTGCGGTACTGTTTTTCTTCACCCGCTCGGTCGGTACGATCCCCGTTACCGCCAGACCaaa                                                                                                                                                        >  1:2524231/1‑289 (MQ=255)
                                                                                                                           gCCCCCTGACACATTTCGCTCAAGTGGCCCAG‑CAGACCAAAGCCCGTAACGTCGGTCATCGCTTTTACTCCTTCGATGTTGGCAAAGGACGCGCCTGCGATGTTCATCCGGCACATCACTTCCGTCGCCACTCCCTGAGTTTCTGGTTTCAACATTGATTTTTTCTCAGCCGTGGTAAGAACGCCGATCCCCAGCGGTCTCCTCAGGAACCGTTTTCGTCCGGCTTTTCCGGTACGGTTTCTCTGCACCAGCTCGGTCTGTACACTCTCCTTTAcctcacgccgctaaa                                                                                                                                                      >  2:2241726/1‑276 (MQ=255)
                                                                                                                           gCCCCCTGACACATTTCGCTCAAGTGGCCCAG‑CAGACCAAAGCCCGTAACGTCGGTCATCGCTTTTACGCCTTCGATGTTGGCAAAGGACGCGCCTGCGATGTTCATCCGGCACATCACTTCCGTCGCCAGTCCCTGATGTTCTGGTTTCAACAGTGATTTTTTCTCAGCCGTGGTAAGAACGCCGATCCCCAGCGGTTTCGTCAGGAACAGTTTGCATCCGGCTTGTGCGGTACTGTTTTTCTTCACCCg                                                                                                                                                                                            >  1:180708/1‑251 (MQ=255)
                                                                                                                            cccccTGACACATTTCGCTCAAGTGGCCCAG‑CAGACCAAAGCCCGTAACGTCGGTCATCGCTTTTACGCCTTCGATGTTGGCAAAGGACGCGCCTGCGATGTTCATCCGGCACATCACTTCCGTCGCCAGTCCCTGATGTTCTGGTTTCAACAGTGATTTTTTCTCAGCCGTGGTAAGAACGCCGATCCCCAGCGGTTTCGTCAGGAACAGTTTGCATCCGGCTTGTTCGGTCCTGTTTTTCTTCACCCGCTCGGTCTGTACGATCCGCGTTAACGCCAGACCaaaac                                                                                                                                                      >  2:1340074/1‑287 (MQ=255)
                                                                                                                                       tgttCGCTCAAGTGGCCCAG‑CGGACCAAAGCCCGTAACGTCGGTCATCGCTTTTACGCCTGCGATGTTGGCAAAGGACGCGCCTGCGATGTTCATCCGGCACATCACTTCCGTCGCCAGTCCCTGATGTTCTGGTTTCAACAGTGATTTTTTCTCAGCCGTGGTAAGAACGCCGATCCCCAGCGGTTTCGTCAGGAACAGTTTGCATCCGGCTTGTGCGGTACTGTTTTTCTTCACCCGCTCGGTCGGTACGATCCCCGTTACCGCCAGACCAAAAATCGGCTCCGgcg                                                                                                                                          <  2:1896543/287‑1 (MQ=255)
                                                                                                                                       aTTTCGCTCAAGTGGCCCAG‑CAGACCAAAGCCCGTAACGTCGGTCATCGCTTTTACGCCTTCGATGTTGGCAAAGGACGCGCCTGCGATGTTCATCCGGCACATCACTTCCGTCGCCAGTCCCTGATGTTCTGGTTTCAACAGTGATTTTTTCTCAGCCGTGGTAAGAACGCCGATCCCCAGCGGTTTCGTCAGGAACAGTTTGCATCCGGCTTGTGCGGTACTGTTTTTCTTCACCCGCTCGGTCGGTACGATCCCCGTTACCGCCAGACCAAAAATCGGCTCCGgcg                                                                                                                                          <  1:2579122/289‑1 (MQ=255)
                                                                                                                                       aTTTCGCTCAAGTGGCCCAG‑CAGACCAAAGCCCGTAACGTCGGTCATCGCTTTTACGCCTTCGATGTTGGCAAAGGACGCGCCTGCGATGTTCATCCGGCACATCACTTCCGTCGCCAGTCCCTGATGTTCTGGTTTCAACAGTGATTTTTTCTCAGCCGTGGTAAGAACGCCGATCCCCAGCGGTTTCGTCAGGAACAGTTTGCATCCGGCTTGTGCGGTACTGTTTTTCTTCACCCGCTCGGTCGGGACGATCCCCGTTACCGCCAGACCAAAAATCGGCCCCGgc                                                                                                                                           >  1:1570818/1‑288 (MQ=255)
                                                                                                                                       aTTCCGCTAACGTGGCCCAGACAG‑CCAACTCCTGTACCCTCGGTCATCGTTTTTACGCCTCCGATGTTGGCAAAGGACGCGCCTGCGATGTTCATCCGGCACATCACTTCCGTCGCCAGTCCCTGATGTTCTGGTTTCAACAGTGATTTTTTCTCAGCCGTGGTAAGAACGCCGATCCCCAGCGGTTTCGTCAGGAACAGTTTGCATCCGGCTTGTGCGGTACTGTTTTTCTTCACCCGCTCGGTCGGTACGATCCCCGTTACCGCCAGACCAAAAATCGGCTCCGgcg                                                                                                                                          <  2:361018/289‑1 (MQ=255)
                                                                                                                                         ttCGCTCAAGTGGCCCAG‑CAGACCAAAGCCCGTAACGTCGGTCATCGCTTTTACGCCTTCGATGTTGGCAAAGGACGCGCCTGCGATGTTCATCCGGCACATCACTTCCGTCGCCAGTCCCTGATGTTCTGGTTTCAACAGTGATTTTTTCTCAGCCGTGGTAAGAACGCCGATCCCCAGCGGTTTCGTCAGGAACAGTTTGCATCCGGCTTGTGCGGTACTGTTTTTCTTCACCCGCtcggt                                                                                                                                                                                      >  1:2151782/1‑243 (MQ=255)
                                                                                                                                         tcagaccacgTGGACCTG‑CAAGCCAAAACCCGTAACGTCGGTAATCCCTTTTACGCCTTTGATGTTGGCAACGGGCGGGCCTGCGATGCTCATCCGGCACATCACTTCCGTCGCCAGTCCCTGATGTTCTGGTTTCAACAGTGATTTTTTCTAAGCCGTGGTAAGAGCGCCGATCCCCAGCGGTTTCGTCAGGAACAGTTTGCATCCGGCTTGTGCGGTACTGTTTTTCTTCACCCGCTCGGTCGGTACGATCCCCGTTACCGCCAGACCAAAAATCGGCTCCGGCGCa                                                                                                                                        <  2:1730840/280‑1 (MQ=255)
                                                                                                                                             cTCAAGTGGCCCAG‑CAGACCAAAGCCCGTAACGTCGGTCATCGCTTTTACGCCTTCGATGTTGGCAAAGGACGCGCCTGCGATGTTCATCCGGCACATCACTTCCGTCGCCAGTCCCTGATGTTCTGGTTTCAACAGTGATTTTTTCTCAGCCGTGGTAAGAACGCCGATCCCCAGCGGTTTCGTCAGGAACAGtt                                                                                                                                                                                                                                 >  1:1317964/1‑196 (MQ=255)
                                                                                                                                             cTCAAGTGGCCCAG‑CAGACCAAAGCCCGTAACGTCGGTCATCGCTTTTACGCCTTCGATGTTGGCAAAGGACGCGCCTGCGATGTTCATCCGGCACATCACTTCCGTCGCCAGTCCCTGATGTTCTGGTTTCAACAGTGATTTTTTCTCAGCCGTGGTAAGAACGCCGATCCCCAGCGGTTTCGTCAGGAACAGtt                                                                                                                                                                                                                                 <  2:1317964/196‑1 (MQ=255)
                                                                                                                                                     gCCCAG‑CAGACCAAAGCCCGTAACGTCGGTCATCGCTTTTACGCCTTCGATGTTGGCAAAGGACGCGCCTGCGATGTTCATCCGGCACATCACTTCCGTCGCCAGTCCCTGATGTTCTGGTTTCAACAGTGATTTTTTCTCAGCCGTGGTAAGAACGCCGATCCCCAGCGGTTTCGTCAGGAGCAGTTTGCATCCGGCTTGTGCGGTACTGTTTTTCTTCACCCGCTCGGTCGTTACGAACCCCGTTACCGCCAGACCAAAAATCGGCTCCGGCGCATCGCTGGAGTg                                                                                                                             >  2:1053193/1‑288 (MQ=255)
                                                                                                                                                     gCCCAG‑CAGACCAAAGCCCGTAACGTCGGTCATCGCTTTTACGCCTTCGATGTTGGCAAAGGACGCGCCTGCGATGTTCATCCGGCACATCACTTCCGTCGCCAGTCCCTGATGTTCTGGTTTCAACAGTGATTTTTTCTCAGCCGTGGTAAGAACGCCGATCCCCAGCGGTTTCGTCAGGAACAGTTTGCATCCGGCTTGTGCGGTACTGTTTTTCTTCACCCGCTCGGTCGGTACGATCCCCGTTACCGCCAGACCAAAAATCGGCTCCGGCGCATc                                                                                                                                      >  2:2075320/1‑279 (MQ=255)
                                                                                                                                                         catccaaCCAAAGCCCGTAACTTCGGTCATCGCTTTTCCTCCTTCGATGTTGGCAAAGGACTCGCCTGCGATGTTCATCCGGCACATCACTTCCTTTGCCAGTCCCTGATGTTCTGGTTTCAACCGTGATTTTTTCTCAGCCGTGGTAAGAACGCCGATCCCCAGCGGTTTCGTCAGGAACAGTTTGCATCCGGCTTGTGCGGTACTGTTTTTCTTCACCCTCTCGGTCGGTACGATCCCCGTTACCGCCAGACCAAAAATCGGCTCCGGCGCATCGATGGAGTGACCg                                                                                                                         <  1:2353496/283‑1 (MQ=255)
                                                                                                                                                               aCCAAAGCCCGTAACGTCGGTCATCGCTTTTACGCCTTCGATGTTGGCAAAGGACGCGCCTGCGATGTTCATCCGGCACATCACTTCCGTCGCCAGTCCCTGATGTTCTGGTTTCAACAGTGATTTTTTCTCAGCCGTGGTAAGAACGCCGATCCCCAGCGGTTTCGTCAGGAACAGTTTGCATCCGGCTTGTGCGGTACTGTTTTTCTTCACCCGCTCGGTCGGTACGATCCCCGTTACCGCCAGACCAAAAATCGGCTCCGgcg                                                                                                                                          <  1:1155/266‑1 (MQ=255)
                                                                                                                                                               aCCAAAGCCCGTAACGTCGGTCATCGCTTTTACGCCTTCGATGTTGGCAAAGGACGCGCCTGCGATGTTCATCCGGCACATCACTTCCGTCGCCAGTCCCTGATGTTCTGGTTTCAACAGTGATTTTTTCTCAGCCGTGGTAAGAACGCCGATCCCCAGCGGTTTCGTCAGGAACAGTTTGCATCCGGCTTGTGCGGTACTGTTTTTCTTCACCCGCTCGGTCGGTACGATCCCCGTTACCGCCAGACCAAAAATCGGCTCCGGCGCATCGATGGAGTGACCgccagcc                                                                                                                   <  1:1511918/289‑1 (MQ=255)
                                                                                                                                                                acAAAGCCCGAAACGTCGGTCCTCGCTTTTACGCCTTCGATGTTGGCAAAGGACGCGCCTGCGATGTTCATCCGGCACATCACTTCCGTCGCCAGTCCCTGAGGTTCTGGTTTCAACAGTGATTTTTTCTCAGCCGTGGTAAGAACGCCGATCCCCAGCGGTTTCGTCAGGAACAGTTTGCATCCGGCTTGTGCGGTACTGTTTTTCGTCACCCGCTCGGTCGGTACGATCCCCGTTACCGCCAGACCAAAAATCGGCTCCGGCGCATCGATGGAGTGACCgccagc                                                                                                                    <  2:2690148/286‑1 (MQ=255)
                                                                                                                                                                 cAAAGCCCGTAACGTCGGTCATCGCTTTTACGCCTTCGATGTTGGCAAAGGACGCGCCTGCGATGTTCATCCGGCACATCACTTCCGTCGCCAGTCCCTGATGTTCTGGTTTCAACAGTGATTTTTTCTCAGCCGTGGTAAGAACGCCGATCCCCAGCGGTTTCGTCAGGAACAGTTTGCATCCGGCTTGTGCGGTACTGTTTTTCTTCACCCGCTCGGTCGGTACGATCCCCGTTACCGCCAGACCAAAAATCGGCTCCGGCGCATCGATGGAGTGACCgccagc                                                                                                                    <  2:723157/286‑1 (MQ=255)
                                                                                                                                                                 cAAAGCCCGTAACGTCGGTCATCGCTTTTACGCCTTCGATGTTGGCAAAGGACGCGCCTGCGATGTTCATCCGGCACATCACTTCCGTCGCCAGTCCCTGATGTTCTGGTTTCAACAGTGATTTTTTCTCAGCCGTGGTAAGAACGCCGATCCCCAGCGGTTTCGTCAGGAACAGTTTGCATCCGGCTTGTGCGGTACTGTTTTTCTTCACCCGCTCGGTCGGTACGATCCCCGTTACCGCCAGACCAAAAATCGGCTCCGGCGCATCGATGGAGTGACCgccagc                                                                                                                    >  1:723157/1‑286 (MQ=255)
                                                                                                                                                                   aaGCCCGTAACGTCGGTCATCGCTTTTACGCCTTCGATGTTGGCAAAGGACGCGCCTGCGATGTTCATCCGGCACATCACTTCCGTCGCCAGTCCCTGATGTTCTGGTTTCAACAGTGATTTTTTCTCAGCCGTGGTAAGAACGCCGATCCCCAGCGGTTTCGTCAGGAACAGTTTGCATCCGGCTTGTGCGGTACTGTTTTTCTTCACCCGCTCGGTCGGTACGATCCCCGTTACCGCCAGACCAAAAATCGGCTCCGGCGCATCGATGGAGTGACCGCCAGCCAgcg                                                                                                               <  1:2466830/289‑1 (MQ=255)
                                                                                                                                                                      cccGTAACGTCGGTCATCGCTTTTACGCCTTCGATGTTGGCAAAGGACGCGCCTGCGATGTTCATCCGGCACATCACTTCCGTCGCCAGTCCCTGATGTTCTGGTTTCAACAGTGATTTTTTCTCAGCCGTGGTAAGAACGCCGATCCCCAGCGGTTTCGTCAGGAACAGTTTGCATCCGGCTTGTGCGGTACTGTTTTTCTTCACCCGCTCGGTCGGTACGATCCCCGTTACCGCCAGACCAAAAATCGGCTCCGGCGCATCGATGGAGTGACCGCCAGCCAGCGCaa                                                                                                            >  2:518567/1‑289 (MQ=255)
                                                                                                                                                                          tAACGTCGGTCATCGCTTTTACGCCTTCGATGTTGGCAAAGGACGCGCCTGCGATGTTCATCCGGCACATCACTTCCGTCGCCAGTCCCTGATGTTCTGGTTTCAACAGTGATTTTTTCTCAGCCGTGGTAAGAACGCCGATCCCCAGCGGTTTCGTCAGGAACAGTTTGCATCCGGCTTGTGCGGTACTGTTTTTCTTCACCCGCTCGGTCGGTACGATCCCCGTTACCGCCAGACCAAAAATCGGCTCCGGCGCATCGATGGAGTGACCGCCAGCCAGCGCAATAc                                                                                                         >  2:2418409/1‑288 (MQ=255)
                                                                                                                                                                          tAACGTCGGTCATCGCTTTTACGCCTTCGATGTTGGCAAAGGACGCGCCTGCGATGTTCATCCGGCACATCACTTCCGTCGCCAGTCCCTGATGTTCTGGTTTCAACAGTGATTTTTTCTCAGCCGTGGTAAGAACGCCGATCCCCAGCGGTTTCGTCAGGAACAGTTTGCATCCGGCTTGTGCGGTACTGTTTTTCTTCACCCGCTCGGTCGGTACGATCCCCGTTACCGCCAGACCAAAAATCGGCTCCGGCGCATCGATGGAGTGACCGCCAGCCAGCGCAATAc                                                                                                         >  1:2679354/1‑288 (MQ=255)
                                                                                                                                                                           aaCGTCGGTCATCGCTTTTACGCCTTCGATGTTGGCAAAGGACGCGCCTGCGATGTTCATCCGGCACATCACTTCCGTCGCCAGTCCCTGATGTTCTGGTTTCAACAGTGATTTTTTCTCAGCCGTGGTAAGAACGCCGATCCCCAGCGGTTTCGTc                                                                                                                                                                                                                                           >  1:898318/1‑157 (MQ=255)
                                                                                                                                                                                cGGTCATCGCTTTTACGCCTTCGATGTTGGCAAAGGACGCGCCTGCGATGTTCATCCGGCACATCACTTCCGTCGCCAGTCCCTGATGTTCTGGTTTCAACAGTGATTTTTTCTCAGCCGTGGTAAGAACGCCGATCCCCAGCGGTTTCGTCAGGAACAGTTTGCATCCGGCTTGTGCGGTACTGTTTTTCTTCACCCGCTCGGTCGGTACGATCCCCGTTACCGCCAGACCAAAAATCGGCTCCGGCGCATCGATTGATGGACCGCCCGCCAGCGCAATACCCGCCt                                                                                                   >  2:1851219/1‑288 (MQ=255)
                                                                                                                                                                                cGGTCATCGCTTTTACGCCTTCGATGTTGGCAAAGGACGCGCCTGCGATGTTCATCCGGCACATCACTTCCGTCGCCAGTCCCTGATGTTCTGGTTTCAACAGTGATTTTTTCTCAGCCGTGGTAAGAACGCCGATCCCCAGCGGTTTCGTCAGGAACAGTTTGCATCCGGCTTGTGCGGTACTGTTTTTCTTCACCCGCTCGGTCGGTACGATCCCCGTTACCGCCAGACCAAAAATCGGCTCCGGCGCATCGATGGAGTGACCGCCAGCCAGCGCAATACCCGCCTg                                                                                                  <  1:522299/289‑1 (MQ=255)
                                                                                                                                                                                cGGTCATCGCTTTTACGCCTTCGATGTTGGCAAAGGACGCGCCTGCGATGTTCATCCGGCACATCACTTCCGTCGCCAGTCCCTGATGTTCTGGTTTCAACAGTGATTTTTTCTCAGCCGTGGTAAGAACGCCGATCCCCAGCGGTTTCGTCAGGAACAGTTTGCATCCGGCTTGTGCGGTACTGTTTTTCTTCACCCGCTCGGTCGGTACGATCCCCGTTACCGCCAGACCAAAAATCGGCTCCGGCGCATCGATGGAGTGACCGCCAGCCAGCGCAATACCCGCCTg                                                                                                  <  2:2568495/289‑1 (MQ=255)
                                                                                                                                                                                cGGTAATCGCGTTTACGCCTGCGATGTTGGCAAAGGACGCGCCTGCGATGTTCATCCGGCACATCACTTCCGTCGCCAGTCCCTGATGTTCTGGTTTCAACAGTGATTTTTTCTCCGCCGTGGTAAGAACGCCGATCCCCAGCGGTTTCGTCAGGAACAGTTTGCATCCGGCTTGTGCGGTACTGTTTTTCTTCACCCGCTCGGTCGGTACGATCCCCGTTACCGCCAGACCAAAAATCGGCTCCGGCGCATCGATGGAGTGACCGCCAGCCAGCGCAATACCCGCCTg                                                                                                  <  2:1029330/289‑1 (MQ=255)
                                                                                                                                                                                   tCATCGCTTTTACGCCTTCGATGTTGGCAAAGGACGCGCCTGCGATGTTCATCCGGCACATCACTTCCGTCGCCAGTCCCTGATGTTCTGGTTTCAACAGTGATTTTTTCTCAGCCATGGTAAGAACGCCGATCCCCAGCGGTTTCGTCAGGAACAGTTTGCATCCGGCTTGTGCGGTACTGTTTTTCTTCACCCGCTCGGTCGGTACGATCCCCGTTACCGCCAGACCAAAAATCGGCTCCGGCGCATCGATGGAGTGACCGCCAGCCAGCGCAATACCCGCCTgac                                                                                                <  2:313626/288‑1 (MQ=255)
                                                                                                                                                                                   tCATCGCTTTAACGCCTTCGATGTTGGAAAAGGACGAGCCTGTGATGTTCTTCCGGCACATCACTTCCGTCGCCAGTCCCTGAGGTTCTGGTTTCAACAGTTATTTTTTCTCAGCCGTGGTAAGAACGCCGATCCCCAGCGGTTTCGTCAGGAACAGTTTGCATCCGGCTTGTGCGGTACTGTTTTTCTTCACCCGCTCGGTCGGTACGATCCCCGTTACCGCCAGACCAAAAATCGGCTCCGGCGCATCGATGGAGTGACCGCCAGCCAGCGCAATACCCGCCTgac                                                                                                <  1:2232638/288‑1 (MQ=255)
                                                                                                                                                                                   tCATCGCTGTTGCGCCGGCGATGTGGGCAAAGCACGCGCCTGCGATGTTCATCCGGCACATCACTTCCGTCGCCAGTCCCTGATGTTCTGGTTTCAACAGTGATTTTTTCTCGGCCGTGGTAAGAACGCCGATCCCAAGCGGTTTCGTCAGGAACAGTTTGCATCCGGCTTGTGCGGTACTGTTTTTCTTCACCCGCTCGGTCGGTACGATCCCCGTTACCGCCAGACCAAAAATCGGCTCCGGCGCATCGATGGAGTGACCGCCAGCCAGCGCAATACCCGCCTgac                                                                                                <  2:266502/288‑1 (MQ=255)
                                                                                                                                                                                            ttACGCCTTCGATGTTGGCAAAGGACGCGCCTGCGATGTTCATCCGGCACATCACTTCCGTCGCCAGTCCCTGATGTTCTGGTTTCAACAGTGATTTTTTCTCAGCCGTGGTAAGAACGCCGATCCCCAGCGGTTTCGTCAGGAACAGTTTGCATCCGGCTTGTGCGGTACTGTTTTTCTTCACCCGCTCGGTCGGTACGATCCCCGTTACCGCCAGACCAAAAATCGGCTCCGGCGCATCGATGGAGTGACCGCCAGCCAGCGCAATACCCGCCTGACGACATGCATa                                                                                      <  1:372595/289‑1 (MQ=255)
                                                                                                                                                                                                    tCGATGTTGGCAAAGGACGCGCCTGCGATGTTCATCCGGCACATCACTTCCGTCGCCAGTCCCTGATGTTCTGGTTTCAACAGTGATTTTTTCTCAGCCGTGGTAAGAACGCCGATCCCCAGCGGTTTCGTCAGGAACAGTTTGCATCCGGCTTGTGCGGTACTGTTTTTCTTCACCCGCTCGGTCGGTACGATCCCCGTTACCGCCCGACCAAAAATCGGCTCCGGCGCATCCATGGAGTGACCGCCAGCCAGCGCAATACCCGCCTGACGACATGCATCGCTTCCa                                                                               >  2:39771/1‑288 (MQ=255)
                                                                                                                                                                                                    tCGATGTTGGCAAAGGACGCGCCTGCGATGTTCATCCGGCACATCACTTCCGTCGCCAGTCCCTGATGTTCTGGTTTCAACAGTGATTTTTTCTCAGCCGTGGTAAGAACGCCGATCCCCAGCGGTTTCGTCAGGAACAGTTTGCATCCGGCTTGTGCGGTACTGTTTTTCTTCACCCGCTCGGTCGGTACGATCCCCGTTACCGCCAGACCAAACATCGGCTCCGGCGCATCGATGGGGTGACCGCCCACCACCGCAATACCCGCCTGACGACCTGCATAGCGTCCa                                                                               >  2:37916/1‑288 (MQ=255)
                                                                                                                                                                                                    tCGATGTTGGCAAAGGACGCGCCTGCGATGTTCATCCGGCACATCACTTCCGTCGCCAGTCCCTGATGTTCTGGTTTCAACAGTGATTTTTTCTCAGCCGTGGTAAGAACGCCGATCCCCAGCGGTTTCGTCAGGAACAGTTTGCATCCGGCTTGTGCGGTACTGTTTTTCTTCACCCGCTCGGTCGGTACGATCCCCGTTACCGCCAGACCAAAAATCGGCTCCGGCGCATCGATGGAGTGACCGCCAGCCAGCGCAATAcc                                                                                                        >  2:1583575/1‑263 (MQ=255)
                                                                                                                                                                                                     cGATGTTGGCAAAGGACGCGCCTGCGATGTTCATCCGGCACATCACTTCCGTCGCCAGTCCCTGATGTTCTGGTTTCAACAGTGATTTTTTCTCAGCCGTGGTAAGAACGCCGATCCCCAGCGGTTTCGTCAGGAACAGTTTGCATCCGGCTTGTGCGGTACTGTTTTTCTTCACCCGCTCGGTCGGTACGATCCCCGTTACCGCCAGACCAAAAATCGGCTCCGGCGCATCGATGGAGTGACCGCCAGCCAGCGCAATACCCGCCTGACGACATGCATAGCGTCCAcc                                                                             <  1:128625/289‑1 (MQ=255)
                                                                                                                                                                                                           tGGCAAAGGACGCGCCTGCGATGTTCATCCGGCACATCACTTCCGTCGCCAGTCCCTGATGTTCTGGTTTCAACAGTGATTTTTTCTCAGCCGTGGTAAGAACGCCGATCCCCAGCGGTTTCGTCAGGAACAGTTTGCATCCGGCTTGTGCGGTACTGTTTTTCTTCACCCGCTCGGTCGGTACGATCCCCGTTACCGCCAGACCAAAAATCGGCTCCGGCGCATCGATGGAGTGACCGCCAGCCAGCGCAATACCCGCCTGACGACATGCATAGCGTCCACCTTCGGt                                                                       <  1:1987978/289‑1 (MQ=255)
                                                                                                                                                                                                            ggCAAAGGACGCGCCTGCGATGTTCATCCGGCACATCACTTCCGTCGCCAGTCCCTGATGTTCTGGTTTCAACAGTGATTTTTTCTCAGCCGTGGTAAGAACGCCGATCCCCAGCGGTTTCGTCAGGAACAGTTTGCATCCGGCTTGTGCGGTACTGTTTTTCTTCACCCGCTCGGTCGGTACGATCCCCGTTACCGCCAGACCAAAAATCGGCTCCGGCGCATCGATGGAGTGACCGCCAGCCAGCGCAATACCCGCCTg                                                                                                  <  1:1167974/261‑1 (MQ=255)
                                                                                                                                                                                                                  ggACGCGCCTGCGATGTTCATCCGGCACATCACTTCCGTCGCCAGTCCCTGATGTTCTGGTTTCAACAGTGATTTTTTCTCAGCCGTGGTAAGAACGCCGATCCCCAGCGGTTTCGTCAGGAACAGTTTGCATCCGGCTTGTGCGGTACTGTTTTTCTTCACCCGCTCGGTCGGTACGATCCCCGTTACCGCCAGACCAAAAATCGGCTCCGGCGCATCGATGGAGTGACCgcca                                                                                                                      <  1:1967335/235‑1 (MQ=255)
                                                                                                                                                                                                                      gcgcCTGCGATGTTCATCCGGCACATCACTTCCGTCGCCAGTCCCTGATGTTCTGGTTTCAACAGTGATTTTTTCTCAGCCGTGGTAAGAACGCCGATCCCCAGCGGTTTCGTCAGGAACAGTTTGCATCCGGCTTGTGCGGTACTGTTTTTCTTCACCCGCTCGGTCGGTACGATCCCCGTTACCGCCAGACCAAAAATCGGCTCCGGCGCATCGATGGAGTGACCGCCAGCCAGCGCAATACCCGCCTGACGACATGCATAGCGTCCACCTTCGGTCACTTCGCgg                                                             >  1:339012/1‑288 (MQ=255)
                                                                                                                                                                                                                       cgcCTGCGATGTTCATCCGGCACATCACTTCCGTCGCCAGTCCCTGATGTTCTGGTTTCAACAGTGATTTTTTCTCAGCCGTGGTAAGAACGCCGATCCCCAGCGGTTTCGTCAGGAACAGTTTGCATCCGGCTTGTGCGGTACTGTTTTTCTTCACCCGCTCGGTCGGTACGATCCCCGTTACCGCCAGACCAAAAATCGGCTCCGGCGCATCGATGGAGt                                                                                                                              >  2:706090/1‑222 (MQ=255)
                                                                                                                                                                                                                                  ttCATCCGGCACATCACTTCCGTCGCCAGTCCCTGATGTTCTGGTTTCAACAGTGATTTTTTCTCAGCCGTGGTAAGAACGCCGATCCCCAGCGGTTTCGTCAGGAACAGTTTGCATCCGGCTTGTGCGGTACTGTTTTTCTTCACCCGCTCGGTCGGTACGATCCCCGTTACCGCCAGACCAAAAATCGGCTCCGGCGCATCGATGGAGTGACCGCCAGCCAGCGCAATACCCGCCTGACGACATGCATa                                                                                      >  1:1103767/1‑251 (MQ=255)
                                                                                                                                                                                                                                         ggCACATCACTTCCGTCGCCAGTCCCTGATGTTCTGGTTTCAACAGTGATTTTTTCTCAGCCGTGGTAAGAACGCCGATCCCCAGCGGTTTCGTCAGGAACAGTTTGCATCCGGCTTGTGCGGTACTGTTTTTCTTCACCCGCTCGGTCGGTACGATCCCCGTTACCGCCAGACCAAAAATCGGCTCCGGCGCATCGATGGAGTGACCGCCAGCCAGCGCAATACCCGCCTGACGACATGCATAGCGTCCACCTTCGGTCACTTCGCGGGCAATTTCTgggg                                                <  1:1586422/282‑1 (MQ=255)
                                                                                                                                                                                                                                          gCACATCACTTCCGTCGCCAGTCCCTGATGTTCTGGTTTCAACAGTGATTTTTTCTCAGCCGTGGTAAGAACGCCGATCCCCAGCGGTTTCGTCAGGAACAGTTTGCATCCGGCTTGTGCGGTACTGTTTTTCTTCACCCGCTCGGTCGGTACGATCCCCGTTACCGCCAGACCAAAAATCGGCTCCGGCGCATCGATGGAGt                                                                                                                              >  2:203084/1‑203 (MQ=255)
                                                                                                                                                                                                                                                cACTTCCGTCGCCAGTCCCTGATGTTCTGGTTTCAACAGTGATTTTTTCTCAGCCGTGGTAAGAACGCCGATCCCCAGCGGTTTCGTCAGGAACAGTTTGCATCCGGCTTGTGCGGTACTGTTTTTCTTCACCCGCTCGGTCGGTACGATCCCCGTTACCGCCAGACCAAAAATCGGCTCCGGCGCATCGATGGAGTGACCGCCAGCCAGCGCAATACCCGCCTGACGACATGCATAGCGTCCACCTTCGGTCACTTCGCGGGCAATTTCTGGGGaa                                              <  1:838502/277‑1 (MQ=255)
                                                                                                                                                                                                                                                cACTTCCGTCGCCAGTCCCTGATGTTCTGGTTTCAACAGTGATTTTTTCTCAGCCGTGGTAAGAACGCCGATCCCCAGCGGTTTCGTCAGGAACAGTTTGCATCCGGCTTGTGCGGTACTGTTTTTCTTCACCCGCTCGGTCGGTACGATCCCCGTTACCGCCAGACCAAAAATCGGCTCCGGCGCATCGATGGAGTGACCGCCAGCCAGCGCAATACCCGCCTGACGACATGCATAGCGTCCACCTTCGGTCACTTCGCGGGCAATTTCTGGGGAAAGTTTGTTAATc                                  >  1:660737/1‑289 (MQ=255)
                                                                                                                                                                                                                                                   ttCCGTCTCCAGTCCCGAATGTGCTGGTTTAAACAGTGATTTTTTCTCAGCCGTGGTAAGAACGCCGATCCCCAGCGGTTTCGTCAGGAACAGTTTGCATCCGGCTTGTGCGGTACTGTTTTTCTTCACCCGCTCGGTCGGTACGATCCCCGTTACCGCCAGACCAAAAATCGGCTCCGGCGCATCGATGGAGTGACCGCCAGCCAGCGCAATACCCGCCTGACGACATGCATAGCGTCCACCTTCGGTCACTTCGCGGGCAATTTCTGGGGAAAGTTTGTTAATCGGc                               <  2:660737/289‑1 (MQ=255)
                                                                                                                                                                                                                                                   ttCCGTCGCCAGTCCCTGATGTTCTGGTTTCAACAGTGATTTTTTCTCAGCCGTGGTAAGAACGCCGATCCCCAGCGGTTTCGTCAGGAACAGTTTGCATCCGGCTTGTGCGGTACTGTTTTTCTTCACCCGCTCGGTCGGTACGATCCCCGTTACCGCCAGACCAAAAATCGGCTCCGGCGCATCGATGGAGTGACCGCCAGCCAGCGCAATACCCGCCTGACGACATGCATAGCGTCCACCTTCGGTCACTTCGCGGGCAATTTCTGGGGAAAGTTTGTTAATCGGc                               <  1:230882/289‑1 (MQ=255)
                                                                                                                                                                                                                                                        tCGCCAGTCCCTGATGTTCTGGTTTCAACAGTGATTTTTTCTCAGCCGTGGTAAGAACGCCGATCCCCAGCGGTTTCGTCAGGAACAGTTTGCATCCGGCTTGTGCGGTACTGTTTTTCTTCACCCGCTCGGTCGGTACGATCCCCGTTACCGCCAGACCAAAAATCGGCTCCGGCGCATCGATGGAGTGACCGCCAGCCAGCGCAACACCCGCCTGACGACATGCATAGCGTCCACCTTCGGTCACTTCGCGGGCAACTTCGGGGGACAGTTTGGTAATCGGCCAGca                          >  2:149055/1‑288 (MQ=255)
                                                                                                                                                                                                                                                             aGTCCCTGATGTTCTGGTTTCAACAGTGATTTTTTCTCAGCCGTGGTAAGAACGCCGATCCCCAGCGGTTTCGTCAGGAACAGTTTGCATCCGGCTTGTGCGGTACTGTTTTTCTTCACCCGCTCGGTCGGTACGATCCCCGTTACCGCCAGACCAAAAATCGGCTCCGGCGCATCGATGGAGTGACCGCCAGCCAGCGCAATACCCGCCTGACGACATGCATAGCGTCCACCTTCGGt                                                                       >  1:443707/1‑239 (MQ=255)
                                                                                                                                                                                                                                                               tCCCTGATGTTCTGGTTTCAACAGTGATTTTTTCTCAGCCGTGGTAAGAACGCCGATCCCCAGCGGTTTCGTCAGGAACAGTTTGCATCCGGCTTGTGCGGTACTGTTTTTCTTCACCCGCTCGGTCGGTACGATCCCCGTTACCGCCAGACCAAAAATCGGCTCCGGCGCATCGATGGAGTGACCGCCAGCCAGCGCAATACCCGCCTGACGACATGCATa                                                                                      >  1:772261/1‑222 (MQ=255)
                                                                                                                                                                                                                                                                  cTGATGTTCTGGTTTCAACAGTGATTTTTTCTCAGCCGTGGTAAGAACGCCGATCCCCAGCGGTTTCGTCAGGAACAGTTTGCATCCGGCTTGTGCGGTACTGTTTTTCTTCACCCGCTCGGTCGGTACGATCCCCGTTACCGCCAGACCAAAAATCGGCTCCGGCGCATCGATGGAGTGACCGCCAGCCAGCGCAATACCCGCCTGACGACATGCATAGCGTCCACCTTCGGTCACTTCGCGGGCAATTTCTGGGGAAAGTTTGTTAATCGGCCAGCCGAGGATCGCa                <  1:2418409/289‑1 (MQ=255)
                                                                                                                                                                                                                                                                         tCTGGTTTCAACAGTGATTTTTTCTCAGCCGTGGTAAGAACGCCGATCCCCAGCGGTTTCGTCAGGAACAGTTTGCATCCGGCTTGTGCGGTACTGTTTTTCTTCACCCGCTCGGTCGGTACGATCCCCGTTACCGCCAGACCAAAAATCGGCTCCGgcg                                                                                                                                          >  2:822122/1‑160 (MQ=255)
                                                                                                                                                                                                                                                                          cTGGTTTCAACAGTGATTTTTTCTCAGCCGTGGTAAGAACGCCGATCCCCAGCGGTTTCGTCAGGAACAGTTTGCATCCGGCTTGTGCGGTACTGTTTTTCTTCACCCGCTCGGTCGGTACGATCCCCGTTACCGCCAGACCAAAAATCGGCTCCGgcg                                                                                                                                          <  1:1336469/159‑1 (MQ=255)
                                                                                                                                                                                                                                                                          cTGGTTTCAACAGTGATTTTTTCTCAGCCGTGGTAAGAACGCCGATCCCCAGCGGTTTCGTCAGGAACAGTTTGCATCCGGCTTGTGCGGTACTGTTTTTCTTCACCCGCTCGGTCGGTACGATCCCCGTTACCGCCAGACCAAAAATCGGCTCCGGCGCATCGATGGAGTGACCGCCAGCCAGCGCAATACCCGCCTGACGACATGCATAGCGTCCACCTTCGGTCACTTCGCGGGCAATTTCTGGGGAAAGTTTGTTAATCGGc                               <  1:1916453/266‑1 (MQ=255)
                                                                                                                                                                                                                                                                           tGGTTTCAACAGTGATTTTTTCTCAGCCGTGGTAAGAACGCCGATCCCCAGCGGTTTCGTCAGGAACAGTTTGCATCCGGCTtgtg                                                                                                                                                                                                                  <  1:973083/86‑1 (MQ=255)
                                                                                                                                                                                                                                                                           tGGTTTCAACAGTGATTTTTTCTCAGCCGTGGTAAGAACGCCGATCCCCAGCGGTTTCGTCAGGAACAGTTTGCATCCGGCTTGTGCGGTACTGTTTTTCTTCACCCGCTCGGTCGGTACGATCCCCGTTACCGCCAGACCAAAAATCGGCTCCGGCGCATCGATGGAGTGACCGCCAGCCAGCGCAATACCCGCCTGACGACATGCATAGCGTCCACCTTCGGTCACTTCGCGGGCAATTTCTGGGGAAAGTTTGTTAATCGGCCAGCCGAGGATCGCAATCGCCATa       >  1:2090456/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                             gTTTCAACAGTGATTTTTTCTCAGCCGTGGTAAGAACGCCGATCCCCAGCGGTTTCGTCAGGAACAGTTTGCATCCGGCTTGTGCGGTACTGTTTTTCTTCACCCGCTCGGTCGGTACGATCCCCGTTACCGCCAGACCAAAAATCGGCTCCGGCGCATCGATGGAGTGACCGCCAGCCAGCGCAATACCCGCCTg                                                                                                  <  1:1469005/196‑1 (MQ=255)
                                                                                                                                                                                                                                                                                       |||                                                                                                                                                                                                                                                                                       
ATCAGATGACCGTAGCTGGCAAAGTTACGTTCAGTGCCGCCAGGTACTGCGCCCAACTTAATGTACTCTTCAACACCGGGGAGTTTCGGGATCGCTTCATAGTCGACGCGTGCCTGCACACCAGCCCCCTGACACATTTCGCTCAAGTGGCCCAG‑CAGACCAAAGCCCGTAACGTCGGTCATCGCTTTTACGCCTTCGATGTTGGCAAAGGACGCGCCTGCGATGTTCATCCGGCACATCACTTCCGTCGCCAGTCCCTGATGTTCTGGTTTCAACAGACTTTTTTTCTCAGCCGTGGTAAGAACGCCGATCCCCAGCGGTTTCGTCAGGAACAGTTTGCATCCGGCTTGTGCGGTACTGTTTTTCTTCACCCGCTCGGTCGGTACGATCCCCGTTACCGCCAGACCAAAAATCGGCTCCGGCGCATCGATGGAGTGACCGCCAGCCAGCGCAATACCCGCCTGACGACATGCATAGCGTCCACCTTCGGTCACTTCGCGGGCAATTTCTGGGGAAAGTTTGTTAATCGGCCAGCCGAGGATCGCAATCGCCATAATCGG  >  CP042583/1529211‑1529770

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A