Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A6 F210 I1 R1 4928 340.1 5480506 96.9% 5310610 252.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA CP042583 1,665,095 3 bp→CGA intergenic (–/–) – / – –/–

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0425831,665,0950GC99.7% 687.3 / NA 290intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base G (0/0);  major base C (130/159);  minor base A (1/0);  total (131/159)
Fisher's exact test for biased strand distribution p-value = 4.52e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*CP0425831,665,0960CG99.7% 675.1 / NA 290intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base C (1/0);  new base G (130/159);  total (131/159)
Fisher's exact test for biased strand distribution p-value = 4.52e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*CP0425831,665,0970TA99.7% 688.9 / NA 290intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base T (0/0);  major base A (131/158);  minor base C (0/1);  total (131/159)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 290 total aligned reads displayed.

CCAGCGTACCGCGCGGTGACGATTTTCTCGTTGACTATGGCCAATAAACCAGGGTTGGGTGACATAGCCGTAATAACGCGTTGGAACATTGCGCGTAAACAAGGTCGGCTGCGTGCTAACGTAAAATCCGGCACGGCTGACATACATCGCCTGTTCAACCATGCTGCTGGAGTTGTGCGCTAGTCGCAGCAAGTAACCAACTTCCAGTGCAGCGGTAATTTCATTGTCGAGGCTTTCATTTTCGCGAG‑ACAGGAGATTCCCCTCGCTGACTAATGCATCGCTCACACCATTAACTGGCAGAGTGCGTCGTCGGTTGAGTTCGATTTTCCAGGCGTGCTCGTCGCGATGCTGTTCGAACTCGGTTACAGCATCACGCAGAGAGGTGAAATCCAGTGGCGCTACGAGAGCTTCGCGCATGCCATTACGTAAAAAGATCAGTTTGTCGACGTTATACTGCAAATGCTTATCGAGCGCGTTGGCAACGTTTTCCAGATGATTACGCTGGCTGGAGATATAGGCATCTTCCAGCACCACCACTTCACGCCAGGTGAGCAAGG  >  CP042583/1664816‑1665372
                                                                                                                                                                                                                                                                                        |||                                                                                                                                                                                                                                                                                   
ccggcagaCCGCCCGGTGACGGTTTTCTCGTTGTGAATGGCCAATAAACCAGGGTTGGGTGACATAGCCGTAATAACGCGTTGGAACATGGCGCGCAAACAAGGTCGGCTGCGTCGAAACGTAAAATCCTGCACGCGAGACATACATCGCCTGTTCAACCATCGACGAGGAGTTGTGCGCTAGTCGCAGCAAGTAACCAACTTCCAGTGCAGCGGTAATTTCATTGTCGAGGCTTTCATTTTCGCGAG‑ACAGGAGACTCCCCTCGCTGACTAATGCATCCGACACACCa                                                                                                                                                                                                                                                                              <  2:1782493/282‑1 (MQ=255)
     gTACCGCGCGGTGACGATTTTCTCGTTGTGAATGGCCAATAAACCAGGGTTGGGTGACATAGCCGTAATAACGCGTTGGAACATTGCGCGTAAACAAGGTCGGCTGCGTCGAAACGTAAAATCCGGCACGCGAGACATACATCGCCTGTTCAACCATCGACGAGGAGTTGTGCGCTAGTCGCAGCAAGTAACCAACTTCCAGTGCAGCGGTAATTTCATTGTCGAGGCTTTCATTTTCGCGAG‑ACAGGAGATTCCCCTCGCTGACTAATGCATCCGACACACCATTaa                                                                                                                                                                                                                                                                          <  1:949026/288‑1 (MQ=255)
           cgcgGTGACGATTTTCTCGTTGTGAATGGCCAATAAACCAGGGTTGGGTGACATAGCCGTAATAACGCGTTGGAACATTGCGCGTAAACAAGGTCGGCTGCGTCGAAACGTAAAATCCGGCACGCGAGACATACATCGCCTGTTCAACCATCGACGAGGAGTTGTGCGCTAGTCGCAGCAAGTAACCAACTTCCAGTGCAGCGGTAATTTCATTGTCGAGGCTTTCATTTTCGCGCG‑ACAGGAGATTCCCCTCGCTTACTACTGCATCCGACACACCATTAACTGGCag                                                                                                                                                                                                                                                                   >  1:1200524/1‑289 (MQ=255)
           cgcgGTGACGATTTTCTCGTTGTGAATGGCCAATAAACCAGGGTTGGGTGACATAGCCGTAATAACGCGTTGGAACATTGCGCGTAAACAAGGTCGGCTGCGTCGAAACGTAAAATCCGGCACGCGAGACATACATCGCCTGTTCAACCATCGACGAGGAGTTGTGCGCTAGTCGCAGCAAGTAACCAACTTCCAGTGCAGCGGTAATTTCATTGTCGAGGCTTTCATTTTCGCGAG‑ACAGGAGATTCCCCTCGCTGACTAATGCATCCGACACACCATTAACTGGCag                                                                                                                                                                                                                                                                   >  1:2203915/1‑289 (MQ=255)
                                   aaTGGCCAATAAACCAGGGTTGGGTGACATAGCCGTAATAACGCGTTGGAACATTGCGCGTAAACAAGGTCGGCTGCGTCGAAACGTAAAATCCGGCACGCGAGACATACATCGCCTGTTCAACCATCGACGAGGAGTTGTGCGCTAGTCGCAGCAAGTAACCAACTTCCAGTGCAGCGGTAATTTCATTGTCGAGGCTTTCATTTTCGCGAG‑ACAGGAGATTCCCCTCGCTGACTAATGCATCCGACACACCATTAACTGGCAGAGTGCGTCGTCGGTTGAGTTCGAt                                                                                                                                                                                                                                           >  1:1769239/2‑289 (MQ=255)
                                       gCCAATAAACCAGGGTTGGGTGACATAGCCGTAATAACGCGTTGGAACATTGCGCGTAAACAAGGTCGGCTGCGTCGAAACGTAAAATCCGGCACGCGAGACATACATCGCCTGTTCAACCATCGACGAGGAGTTGTGCGCTAGTCGCAGCAAGTAACCAACTTCCAGTGCAGCGGTAATTTCATTGTCGAGGCTTTCATTTTCGCGAG‑ACAGGAGATTCCCCTCGCTGACTAATGCATCCGACACACCATTAACTGGCAGAGTGCGTCGTCGGTTGAGTTCGAtttt                                                                                                                                                                                                                                        >  1:2412859/1‑288 (MQ=255)
                                           aTAAACCAGGGTTGGGTGACATAGCCGTAATAACGCGTTGGAACATTGCGCGTAAACAAGGTCGGCTGCGTCGAAACGTAAAATCCGGCACGCGAGACATACATCGCCTGTTCAACCATCGACGAGGAGTTGTGCGCTAGTCGCAGCAAGTAACCAACTTCCAGTGCAGCGGTAATTTCATTGTCGAGGCTTTCATTTTCGCGAG‑ACAGGAGATTCCCCTCGCTGACTAATGCATCCGACACACCATTAACTGGCAGAGTGCGTCGTCGGTTGAGTTCGATTTTCCAg                                                                                                                                                                                                                                    >  2:1569905/1‑288 (MQ=255)
                                                 cAGGGTTGGGTGACATAGCCGTAATAACGCGTTGGAACATTGCGCGTAAACAAGGTCGGCTGCGTCGAAACGTAAAATCCGGCACGCGAGACATACATCGCCTGTTCAACCATCGACGAGGAGTTGTGCGCTAGTCGCAGCAAGTAACCAACTTCCAGTGCAGCGGTAATTTCATTGTCGAGGCTTTCATTTTCGCGAG‑ACAGGAGATTCCCCTCGCTGACTAATGCATCCGACACACCATTAACTGGCAGAGTGCGTCGTCGGTTGAGTTCGATTTTCCAGGCGTGCt                                                                                                                                                                                                                             <  1:1034474/289‑1 (MQ=255)
                                                   aacaggggTGACATAGCCGAAATAACGCGTCGGAACATTGCGCGTAAACAAGGGCGGCTGCGTCGAAACGTAAAGTCCGGCACGCGAGACATACATCGCCTGTTCAACCATCGACGAGGAGTTGTGCGCGAGTCGCAGCAAGTAACCAACTTCCAGTGCAGCGGTAATTTCATTGTCGAGGCTTTCATTTTCGCGAG‑ACAGGAGATTCCCCTCGCTGACTAATGCGTCCGACACACCATTAACTGGCAGAGTGCGTCGTCGGTTGAGTTCGATTTTCCAGGCGTGCt                                                                                                                                                                                                                             <  2:828892/282‑1 (MQ=255)
                                                         ggTGACATAGCCGTAATAACGCGTTGGAACATTGCGCGTAAACAAGGTCGGCTGCGTCGAAACGTAAAATCCGGCACGCGAGACATACATCGCCTGTTCAACCATCGACGAGGAGTTGTGCGCTAGTCGCAGCAAGTAACCAACTTCCAGTGCAGCGGTAATTTCATTGTCGAGGCTTTCATTTTCGCGAG‑ACAGGAGATTCCCCTCGCTGACTAATGCATCCGACACACCATTAACTGGCAGAGTGCGTCGTCGGTTGAGTTCGATTTTCCAGGCGTGCTCGTCGCGa                                                                                                                                                                                                                     >  1:489825/1‑289 (MQ=255)
                                                            gACATAGCCGTAATAACGCGTTGGAACATTGCGCGTAAACAAGGTCGGCTGCGTCGAAACGTAAAATCCGGCACGCGAGACATACATCGCCTGTTCAACCATCGACGAGGAGTTGTGCGCTAGTCGCAGCAAGTAACCAACTTCCAGTGCAGCGGTAATTTCATTGTCGAGGCTTTCATTTTCGCGAG‑ACAGGAGATTCCCCTCGCTGACTAATGCATCCGACACACCATTAACTGGCAGAGTGCGTCGTCGGTTGAGTTCGATTTTCCAGGCGTGCTCGTCGCGATg                                                                                                                                                                                                                   <  2:2609170/288‑1 (MQ=255)
                                                              cATAGCCGTAATAACGCGTTGGAACATTGCGCGTAAACAAGGTCGGCTGCGTCGAAACGTAAAATCCGGCACGCGAGACATACATCGCCTGTTCAACCATCGACGAGGAGTTGTGCGCTAGTCGCAGCAAGTAACCAACTTCCAGTGCAGCGGTAATTTCATTGTCGAGGCTTTCATTTTCGCGAG‑ACAGGAGATTCCCCTCGCTGACTAATGCATCCGACACACCATTAACTGGCAGAGTGCGTCGTCGGTTGAGTTCGATTTTCCAGGCGTGCTCGTCGCGAt                                                                                                                                                                                                                    >  1:250081/1‑285 (MQ=255)
                                                                   ccGTAATAACGCGTTGGAACATTGCGCGTAAACAAGGTCGGCTGCGTCGAAACGTAAAATCCGGCACGCGAGACATACATCGCCTGTTCAACCATCGACGAGGAGTTGTGCGCTAGTCGCAGCAAGTAACCAACTTCCAGTGCAGCGGTAATTTCATTGTCGAGGCTTTCATTTTCGCGAG‑ACAGGAGATTCCCCTCGCTGACTAATGCATCCGACACACCAtt                                                                                                                                                                                                                                                                            >  1:1659572/1‑224 (MQ=255)
                                                                   ccGTAATAACGCGTTGGAACATTGCGCGTAAACAAGGTCGGCTGCGTCGAAACGTAAAATCCGGCACGCGAGACATACATCGCCTGTTCAACCATCGACGAGGAGTTGTGCGCTAGTCGCAGCAAGTAACCAACTTCCAGTGCAGCGGTAATTTCATTGTCGAGGCTTTCATTTTCGCGAG‑ACAGGAGATTCCCCTCGCTGACTAATGCATCCGACACACCATTAACTGGCAGAGTGCGTCGTCGGTTGAGTTCGATTTTCCAGGCGTGCTCGTCGCGATGCTGTTCGa                                                                                                                                                                                                           >  2:931616/1‑289 (MQ=255)
                                                                    cGTAATAACGCGTTGGAACATTGCGCGTAAACAAGGTCGGCTGCGTCGAAACGTAAAATCCGGCACGCGAGACATACATCGCCTGTTCAACCATCGACGAGGAGTTGTGCGCTAGTCGCAGCAAGTAACCAACTTCCAGTGCAGCGGTAATTTCATTGTCGAGGCTTTCATTTTCGCGAG‑ACAGGAGATTCCCCTCGCTGACTAATGCATCCGACACACCATTAACTGGCAGAGTGCGTCGTCGGTTGAGTTCGATTTTCCAGGCGTGCTCGTCGCGATGCTGTTCGaa                                                                                                                                                                                                          <  2:250081/289‑1 (MQ=255)
                                                                      taataaCGCGTTGGAACATTGCGCGTAAACAAGGTCGGCTGCGTCGAAACGTAAAATCCGGCACGCGAGACATACATCGCCTGTTCAACCATCGACGAGGAGTTGTGCGCTAGTCGCAGCAAGTAACCAACTTCCAGTGCAGCGGTAATTTCATTGTCGAGGCTTTCATTTTCGCGAG‑ACAGGAGATTCCCCTCGCTGACTAATGCATCCGACACACCATTAACTGGCAGAGTGCGTCGTCGGTTGAGTTCGATTTTCCAGGCGTGCTCGTCGCGATGCTGTTCGAAc                                                                                                                                                                                                         >  1:1317503/1‑288 (MQ=255)
                                                                            cgcgTTGGAACATTGCGCGTAAACAAGGTCGGCTGCGTCGAAACGTAAAATCCGGCACGCGAGACATACATCGGCTGTTCAACCATCGACGAGGAGTTGTGCGCTAGTCGCAGCAAGTAACCAACTTCCAGTGCAGCGGTAATTTCATTGTCGAGGCTTTCATTTTCGCGAG‑ACAGGAGATTCCCCTCGCTGACTAATGCATCCGACACACCATTAACTGGCAGAGTGCGTCGTCGTTTGAGTTCGATTTTCCAGGCGTGCTCTGCGCGATGCTGTTCGAACTCGGtt                                                                                                                                                                                                   >  1:59787/1‑288 (MQ=255)
                                                                            cgcgTTGGAACATTGCGCGTAAACAAGGTCGGCTGCGTCGAAACGTAAAATCCGGCACGCGAGACATACATCGCCTGTTCAACCATCGACGAGGAGTTGTGCGCTAGTCGCAGCAAGTAACCAACTTCCAGTGCAGCGGTAATTTCATTGTCGAGGCTTTCATTTTCGCGAG‑ACCGGAGATTCCCCTCGCTGACTAATGCATCCGACACACCATTAACTGGCAGAGTGCGTCGTCGGGTGAGTTCGATTTTCCAGGCGGCCCCGTCGCGCTGCTGTCCGAACCTGGtt                                                                                                                                                                                                   >  2:437797/1‑288 (MQ=255)
                                                                            cgcgTTGGAACATTGCGCGTAAACAAGGTCGGCTGCGTCGAAACGTAAAATCCGGCACGCGAGACATACATCGCCTGTTCAACCATCGACGAGGAGTTGTGCGCTAGTCGCAGCAAGTAACCAACTTCCAGTGCAGCGGTAATTTCATTGTCGAGGCTTTCATTTTCGCGAG‑ACAGGAGATTCCCCTCGCTGACTAATGCATCCGACACACCATTAACTGGCAGAGTGCGTCGTCGGTTGAGTTCGATTTTCCAGGCGTGCTCGTCGCGATGCTGTTCGAACTCGGtt                                                                                                                                                                                                   >  2:642389/1‑288 (MQ=255)
                                                                            cccgTTGGAAACTTGCGCGTAAACAAGGTCGGCTGCGTCGAAACGTAAAATCCGGCACGCGAGACATACATCGCCTGTTCAACCATCGACGAGGAGTTGTGCGCTAGTCGCAGCAAGTAACCAACTTCCAGTGCAGCGGTAATTTCATTGTCGAGGCTTTCATTTTCGCGAG‑ACAGGAGATTCCCCTCGCTGACTAATGCATCCGACACACCATTAACTGGCAGAGTGCGTCGTCGGTTGAGTTCGATTTTCCAGGCGTGCTCGTCGCGATGCTGTTCGAACTCGGTTa                                                                                                                                                                                                  <  2:519427/287‑1 (MQ=255)
                                                                              cgTTGGGACATTGCGCGTAAACAAGGTCGGCTGCGTCGAAACGTAAAATCCGGCACGCGAGACATACATCGCCTGTTCAACCATCGACGAGGAGTTGTGCGCTAGTCGCAGCTAGTAACCAACTTCCAGTGCAGCGGTAATTTCATTGTCGAGGCTTTCATTTTCGCGAG‑ACAGGAGATTCCCCTCGCTGACTAATGCATCCGACACACCATTAACTGGCAGAGTGCGTCGTCAGTTGAGTTCGATTTTCCAGGCGTGCTCGTATCAATGCCGTTCGAACTCGGTTACa                                                                                                                                                                                                >  2:721735/1‑289 (MQ=255)
                                                                                 tGGAACATTGCGCGTAAACAAGGTCGGCTGCGTCGAAACGTAAAATCCGGCACGCGAGACATACATCGCCTGTTCAACCATCGACGAGGAGTTGTGCGCTAGTCGCAGCACGTAACCAACTTCCAGTGCAGCGGTAATTTCATTGTCGAGGCTTTCATTTTCGCGAG‑ACAGGAGATTCCCCTCGCTGACTAATGCATCCGACACACCATCAACTGGCGGAGTGCGTCGTCGGTTGAGTTCTATTTTCCATGCGTGCTCGTCGCTATGCTGTTCGAACCCGGTTACAGc                                                                                                                                                                                              >  2:2483062/1‑288 (MQ=255)
                                                                                 tGGAACATTGCGCGTAAACAAGGTCGGCTGCGTCGAAACGTAAAATCCGGCACGCGAGACATACATCGCCTGTTCAACCATCGACGAGGAGTTGTGCGCTAGTCGCAGCAAGTAACCAACTTCCAGTGCAGCGGTAATTTCATTGTCGAGGCTTTCATTTTCGCGAG‑ACAGGAGATTCCCCTCGCTGACTAATGCATCCGACACACCATTAACTGGCAGAGTGCGTCGTCGGTTGAGTTCGATTTTCCAGGCGTGCTCGTCGCGATGCTGTTCGAACTCGGTTACAGCa                                                                                                                                                                                             <  1:1424110/289‑1 (MQ=255)
                                                                                 tGGAACATTGCGCGTAAACAAGGTCGGCTGCGTCGAAACGTAAAATCCGGCACGCGAGACATACATCGCCTGTTCAACCATCGACGAGGAGTTGTGCGCTAGTCGCAGCAAGTAACCAACTTCCAGTGCAGCGGTAATTTCATTGTCGAGGCTTTCATTTTCGCGAG‑ACAGGAGATTCCCCTCGCTGACTAATGCATCCGACACACCATTAACTGGCAGAGTGCGTCGTCGGTTGAGTTCGATTTTCCAGGCGGGCTCGTCGCCATGCTGTTCGAACTCGGTTACAGCa                                                                                                                                                                                             >  1:530974/1‑289 (MQ=255)
                                                                                     aCATTCCGCGTCACCAAGGACGGCTGAGTCGACACGTAATATCCGGCACGCCAGACATACAGCGCCTGTTCAACCATCGACGAGGAGTTGTGCGCTAGTCGCAGCAAGTAACCAACTTCCAGTGCAGCGGTAATTTCATTGTCGAGGCTTTCATTTTCGCGAG‑ACAGGAGATTCCCCTCGCTGACTAATGCATCCGACACACCATTAACTGGCAGAGTGCGTCGTCGGTTGAGTTCGATTTTCCAGGCGTGCTCGTCGCGATGCTGTTCGAACTCGGTTACAGCATCa                                                                                                                                                                                          <  2:1184063/288‑1 (MQ=255)
                                                                                        tgtcgccTAAACAAGGTCGGCTGCGTCGACACGTAAAATGCGGCACGCGAGACATACATCGCCTGTTCAACCATCGACGAGGAGTTGGGCGCTAGTAGCAGCAAGTAACCAACTTCCAGTGCAGCGGTACTTTCATTGTCGAGGCTTTCATTTTCGCGAG‑ACAGGAGATTCCCCTCGCTGACTAATGCATCCGACACACCATTAACTGGCAGAGTGCGTCGTCGGTTGAGTTCGATTTTCCAGGCGTGCTCGTCGCGATGCTGTTCGAACTCGGTTACAGCATCACGCa                                                                                                                                                                                      <  2:2667454/286‑1 (MQ=255)
                                                                                           cgcgTAAACAAGGTCGGCTGCGTCGAAACGTAAAATCCGGCACGCGAGACATACATCGCCTGTTCAACCATCGACGAGGAGTTGTGCGCTAGTCGCAGCAAGTAACCAACTTCCAGTGCAGCGGTAATTTCATTGTCGAGGCTTTCATTTTCGCGAG‑ACAGGAGATTCCCCTCGCTGACTAATGCATCCGACACACCATTAACTGGCAGAGTGCGTCGTCgg                                                                                                                                                                                                                                                      <  1:1490779/222‑1 (MQ=255)
                                                                                             cgTAAACAAGGTCGGCTGCGTCGAAACGTAAAATCCGGCACGCGAGACATACATCGCCTGTTCAACCATCGACGAGGAGTTGTGCGCTAGTCGCAGCAAGTAACCAACTTCCAGTGCAGCGGTAATTTCATTGTCGAGGCTTTCATTTTCGCGAG‑ACAGGAGATTCCCCTCGCTGACTAAGGCATCCGACACACCATTAACTGGCAGAGTGCGTCGTCGGTTGAGTTCGATTTTCCAGGCGTGCTCGTCGCGATGCTGTTCGAACGCGGTTAACGCATCACGCagagag                                                                                                                                                                                 >  2:1376637/1‑289 (MQ=255)
                                                                                                aaaCAAGGTCGGCTGCGTCGAAACGTAAAATCCGGCACGCGAGACATACATCGCCTGTTCAACCATCGACGAGGAGTTGTGCGCTAGTCGCAGCAAGTAACCAACTTCCAGTGCAGCGGTAATTTCATTGTCGAGGCTTTCATTTTCGCGAG‑ACAGGAGATTCCCCTCGCTGACTAATGCATCCGACACACCATTAACTGGCAGAGTGCGTCGTCGGTTGAGTTCGATTTTCCAGGCGTGCTCGTCGCGATGCTGTTCGAACTCGGTTACAGCATCACGCAGGGAGGTg                                                                                                                                                                              >  1:1847508/1‑289 (MQ=255)
                                                                                                       gTCGGCTGCGTCGAAACGTAAAATCCGGCACGCGAGACATACATCGCCTGTTCAACCATCGACGAGGAGTTGTGCGCTAGTCGCAGCAAGTAACCAACTTCCAGTGCAGCGGTAATTTCATTGTCGAGGCTTTCATTTTCGCGAG‑ACAGGAGATTCCCCTCGCTGACTAATGCATCCGACACACCATTAACTGGCAGAGTGCGTCGTCGGTTGAGTTCGATTTTCCAGGCGTGCCCGTCGCGATGCGGTTCGAACTCGGGTACAGCATACCGCAGAGCGGCGAAATccc                                                                                                                                                                       >  2:1953459/1‑288 (MQ=255)
                                                                                                         cGGCTGCGTCGAAACGTAAAATCCGGCACGCGAGACATACATCGCCTGTTCAACCATCGACGAGGAGTTGTGCGCTAGTCGCAGCAAGTAACCAACTTCCAGTGCAGCGGTAATTTCATTGTCGAGGCTTTCATTTTCGCGAG‑ACAGGAGATTCCCCTCGCTGACTAATGCATCCGACACACCATTAACTGGCAGAGTGCGTCGTCGGTTGAGTTCGATTTTCCAGGCGTGCTCGTCGCGATGCTGTTCGAACTCGGTTACAGCATCACGCAGAGAGGTGAAATCCAGt                                                                                                                                                                     <  1:1953459/289‑1 (MQ=255)
                                                                                                          ggCTGCGTCGAAACGTAAAATCCGGCACGCGAGACATACATCGCCTGTTCAACCATCGACGAGGAGTTGTGCGCTAGTCGCAGCAAGTAACCAACTTCCAGTGCAGCGGTAATTTCATTGTCGAGGCTTTCATTTTCGCGAG‑ACAGGAGATTCCCCTCGCTGACTAATGCATCCGACACACCATTAACTGGCAGAGTGCGTCGTCGGTTGAGTTCGATTTTCCAGGCGTGCTCGTCGCGCTGCTGTTCGAACCCGGTTACAGCACCACGCCGAGAGGCGAAATCCAGTg                                                                                                                                                                    >  2:2400172/1‑289 (MQ=255)
                                                                                                          ggCTGCGTCGAAACGTAAAATCCGGCACGCGAGACATACATCGCCTGTTCAACCATCGACGAGGAGTTGTGCGCTAGTCGCAGCAAGTAACCAACTTCCAGTGCAGCGGTAATTTCATTGTCGAGGCTTTCATTTTCGCGAG‑ACAGGAGATTCCCCTCGCTGACTAATGCATCCGACACACCATTAACTGGCAGAGTGCGTCGTCGGTTGAGTTCGATTTTCCAGGCGTGCTCGTCGCGATGCTGTTCGAACTCGGTTACAGCATCACGCAGAGAGGTGAAATCCAGTg                                                                                                                                                                    >  1:1218004/1‑289 (MQ=255)
                                                                                                                 tcgaaaCGTAAAATCCGGCACGCGAGACATACATCGCCTGTTCAACCATCGACGAGGAGTTGTGCGCTAGTCGCAGCAAGTAACCAACTTCCAGTGCAGCGGTAATTTCATTGTCGAGGCTTTCATTTTCGCGAG‑ACAGGAGATTCCCCTCGCTGACTAATGCATCCGACACACCATTAACTGGCAGAGTGCGTCGTCGGTTGAGTTCGATTTTCCAGGCGTGCTCGTCGCGATg                                                                                                                                                                                                                   >  2:1329107/5‑235 (MQ=255)
                                                                                                                   gaaaggTAAAATCCGGAGCGCGAGACATCCATCGCCTGTTCAACCATCGACGAGGAGTTGTGCGCTAGTCGCAGCAAGTAACCAACTTCCAGTGCAGCGGTAATTTCATTGTCGAGGCTTTCATTTTCGCGAG‑ACAGGAGATTCCCCTCGCTGACTAATGCATCCGACACACCATTAACTGGCAGAGTGCGTCGTCGGTTGAGTTCGATTTTCCAGGCGTGCTCGTCGCGATGCTGTTCGAACTCGGTTACAGCATCACGCAGAGAGGTGAAATCCAGTGGCGCTACga                                                                                                                                                           <  2:1244152/284‑1 (MQ=255)
                                                                                                                   gaaaCGTAAAATCCGGCACGCGAGACATACATCGCCTGTTCAACCATCGACGAGGAGTTGTGCGCTAGTCGCAGCAAGTAACCAACTTCCAGTGCAGCGGTAATTTCATTGTCGAGGCTTTCATTTTCGCGAG‑ACAGGAGATTCCCCTCGCTGACTAATGCATCCGACACACCATTAACTGGCAGAGTGCGTCGTCGGTTGAGTTCGATTTTCCAGGCGTGCTCGTCGCGATGCTGTTCGAACTCGGTTACAGCATCACGCAGAGAGGTGAAATCCAGTGGCGCTACga                                                                                                                                                           <  2:1208299/287‑1 (MQ=255)
                                                                                                                    aaaCGTAAAATCCGGCACGCGAGACATACATCGCCTGTTCAACCATCGACGAGGAGTTGTGCGCTAGTCGCAGCAAGTAACCAACTTCCAGTGCAGCGGTAATTTCATTGTCGAGGCTTTCATTTTCGCGAG‑ACAGGAGATTCCCCTCGCTGACTAATCCATCCGACACACCATTAACTGGCAGAGTGCGACGTCGGTTGAGCTCGATTTTCCAGGCTTGCTCGTCGCCATGCTGTTCGAACTCGGTCACACCACCACGCAGAGAGGTGAAATCCCGTGGctctcgcga                                                                                                                                                          >  2:1836307/2‑284 (MQ=255)
                                                                                                                        gTAAAATCCGTCACGCGAGACATACATCGCCTGTTCAACCATCGACGAGGAGTTGTGCGCTAGTCGCAGCAAGTAACCAACTTCCAGTGCAGCGGTAATTTCATTGTCGAGGCTTTCATTTTCGCGAG‑ACAGGAGATTCCCCTCGCTGACTAATGCATCCGACACACCATTAACTGGCAGAGTGCGTCGTCGGTTGAGTTCGATTTTCCAGGCGTGCTCGTCGCGATGCTGTTCGAACTCGGTTACAGCATCACGCAGAGAGGTGAAATCCAGTGGCGCTACGAGAGCt                                                                                                                                                      <  1:1376637/289‑1 (MQ=255)
                                                                                                                        gTAAAATCCGGCACGCGAGACATACATCGCCTGTTCAACCATCGACGAGGAGTTGTGCGCTAGTCGCAGCAAGTAACCAACTTCCAGTGCAGCGGTAATTTCATTGTCGAGGCTTTCATTTTCGCGAG‑ACAGGAGATTCCCCTCGCTGACTAATGCATCCGACACACCATTAACTGGCAGAGTGCGTCGTCGGTTGAGTTCGATTTTCCAGGCGTGCTCGTCGCGATGCTGTTCGAACTCGGTTACAGCATCACGCAGAGAGGTGAAATCCAGTGGCGCTACGAGAGCt                                                                                                                                                      <  1:2382892/289‑1 (MQ=255)
                                                                                                                         tAAAATCCGGCACGCGAGACATACATCGCCTGTTCAACCATCGACGAGGAGTTGTTCGCTAGTCGCAGCAAGTAACCAACTTCCAGTGCAGCGGTAATTTCATTGTCGAGGCTTTCATTTTCGCGAG‑ACAGGAGATTCCCCTCGCTGACTAATGCATCCGACACACCATTAACTGGCAGAGTGCGTCGTCGGTTGAGTTCGATTTTCCAGGCGTGCTCGTCGCGATGCTGTTCGAACTCGGTTACAGCATCACGCAGAGAGGTGAAATCCAGTGGCGCTACGAGAGCt                                                                                                                                                      >  2:1136688/1‑288 (MQ=255)
                                                                                                                              gccGGCACGCGAGAAATACACAGCCTGTTCAACCATCGAGGAGGAGTTGTGCGCTAGTCGCAGCAAGTAACCAACTTCCAGTGCAGCGGTAATTTCATTGTCGAGGCTTTCATTTTCGCGAG‑ACAGGAGATTCCCCTCGCTGACTAATGCATCCGACACACCATTAACTGGCAGAGTGCGTCGTCGGTTGAGTTCGATTTTCCAGGCGTGCTCGTCGCGATGCTGTTCGAACTCGGTTACAGCATCACGCAGAGAGGTGAAATCCAGTGGCGCTACGAGAGCTTCgcgc                                                                                                                                                <  2:1068694/288‑1 (MQ=255)
                                                                                                                                 ggcacgcgagACATACATCGCCTGTTCAACCATCGACGAGGAGTTGTGCGCTAGTCGCAGCAAGTAACCAACTTCCAGTGCAGCGGTAATTTCATTGTCGAGGCTTTCATTTTCGCGAG‑ACAGGAGATTCCCCTCGCTGACTAATGCATCCGACACACCATTAACTGGCAGAGTGCGTCGTCGGTTGAGTTCGATTTTCCAGGCGTGCTCGTCGCGATGCTGTTCGAACTCGGTTACAGCATCACGCAGAGTGGTGAAATCCAGTGGCGCTACGAATGCTTcgtccag                                                                                                                                              >  2:2067983/10‑283 (MQ=255)
                                                                                                                                  gcacgcgagACATACATCGCCTGTTCAACCATCGACGAGGAGTTGTGCGCTAGTCGCAGCAAGTAACCAACTTCCAGTGCAGCGGTAATTTCATTGTCGAGGCTTTCATTTTCGCGAG‑ACAGGAGATTCCCCTCGCTGACTAATGCATCCGACACACCATTAACTGGCAGAGTGCGTCGTCGGTTGAGTTCGATTTTCCAGGCGTGCTCGTCGCGATGCTGTTCGAACt                                                                                                                                                                                                        >  1:2481965/9‑229 (MQ=255)
                                                                                                                                                catCGCCTGTTCAACCATCGACGAGGAGTTGTGCGCTAGTCGCAGCAAGTAACCAACTTCCAGTGCAGCGGTAATTTCATTGTCGAGGCTTTCATTTTCGCGAG‑ACAGGAGATTCCCCTCGCTGACTAATGCATCCGACACACCATTAACTGGCAGAGTGCGTCGTCGGTTGAGTTCGATTTTCCAGGCGTGCTCGTCGCGATGCTGTTCGAACTCGGTTACa                                                                                                                                                                                                <  2:2107456/223‑1 (MQ=255)
                                                                                                                                                  tCGCCTGTTCAACCATCGACGAGGAGTTGTGCGCTAGTCGCAGCAAGTAACCAACTTCCAGTGCAGCGGTAATTTCATTGTCGAGGCTTTCATTTTCGCGAG‑ACAGGAGATTCCCCTCGCTGACTAATGCATCCGACACACCATTAACTg                                                                                                                                                                                                                                                                       <  2:1481225/150‑1 (MQ=255)
                                                                                                                                                  tCGCCTGTTCAACCATCGACGAGGAGTTGTGCGCTAGTCGCAGCAAGTAACCAACTTCCAGTGCAGCGGTAATTTCATTGTCGAGGCTTTCATTTTCGCGAG‑ACAGGAGATTCCCCTCGCTGACTAATGCATCCGACACACCATTAACTGGCAGAGTGCGTCGTCGGTTGAGTTCGATTTTCCAGGCGTGCTCGTCGCGATGCTGTTCGAACTCGGTTTCAGCATCACGCAGAGAGGTGAAATCCAGTgg                                                                                                                                                                   >  1:85143/1‑250 (MQ=255)
                                                                                                                                                    gCCTGTTCAACCATCGACGAGGAGTTGTGCGCTAGTCGCAGCAAGTAACCAACTTCCAGTGCAGCGGTAATTTCATTGTCGAGGCTTTCATTTTCGCGAG‑ACAGGAGATTCCCCTCGCTGACTAATGCATCCGACACACCATTAACTGGCAGAGTGCGTCGTCGGTTGAGTTCGATTTTCCAGGCGTGCTCGTCGCGATGCTGTTCg                                                                                                                                                                                                            <  1:918816/207‑1 (MQ=255)
                                                                                                                                                    gCCTGTTCAACCATCGACGAGGAGTTGTGCGCTAGTCGCAGCAAGTAACCAACGTCCAGTGCAGCGGTAATTTCATTGTCGAGGCTTTCATTTTCGCGAG‑ACAGGAGATTCCCCTCGCTGACTAATGCATCCGACACACCATTAACTGGCAGAGTGCGTCGTCGGTTGAGTTCGa                                                                                                                                                                                                                                            <  2:1713054/175‑1 (MQ=255)
                                                                                                                                                     ccTGTTCAACCATCGACGAGGAGTTGTGCGCTAGTCGCAGCAAGTAACCAACTTCCAGTGCAGCAGTAATTTCATTGTCGAGGCTTTCATTTTCGCGAG‑ACAGGAGATTCCCCTCGCTGACTAATGCATCCGACACACCATTAACTGGCAGAGTGCGTCGTCGGTTGAGTTCGATTTTCCAGGCGTGCTCGTCGCGATGCTGTTCGAACTCGGTTACAGCATCACGCAGAGAGGTGAAATCCAGTGGCGCTACGAGAGCTTCGCGCATGCCATTACGTAAAAAGATCAg                                                                                                                         >  1:2022456/1‑289 (MQ=255)
                                                                                                                                                          tcaaccatcgacgaggAGTTGTGCGCTAGTCGCAGCAAGTAACCAACTTCCAGTGCAGCGGTAATTTCATTGTCGAGGCTTTCATTTTCGCGAG‑ACAGGAGATTCCCCTCGCTGACTAATGCATCCGACACACCATTAACTGGCAGAGTGCGTCGTCGGTTGAGTTCGATTTTCCAGGCGTGCTCGTCGCGATGCTGTTCGAACTCGGTTACAGCATCACGCAGAGAGGTGAAATCCAGTGGCGCTACGAGAGCTTCGCGCATGCCATTACGTAAAAAGATCAGTTTGt                                                                                                                    <  1:2428096/275‑1 (MQ=255)
                                                                                                                                                          tcaaccatcgacgaggAGTTGTGCGCTAGTCGCAGCAAGTAACCAACTTCCAGTGCAGCGGTAATTTCATTGTCGAGGCTTTCATTTTCGCGAG‑ACAGGAGATTCCCCTCGCTGACTAATGCATCCGACACACCATTAACTGGCAGAGTGCGTCGTCGGTTGAGTTCGATTTTCCAGGCGTGCTCGTCGCGATGCTGTTCGAACTCGGTTACAGCATCACGCAGAGAGGTGAAATCCAGTGGCGCTACGAGAGCTTCGCGCATGCCATTACGTAAAAAGATCAGTTTGt                                                                                                                    <  1:1535632/275‑1 (MQ=255)
                                                                                                                                                             accatcgacgaggAGTTGTGCGCTAGTCGCAGCAAGTAACCAACTTCCAGTGCAGCGGTAATTTCATTGTCGAGGCTTTCATTTTCGCGAG‑ACAGGAGATTCCCCTCGCTGACTAATGCATCCGACACACCATTAACTGGCAGAGTGCGTCGTCGGTTGAGTTCGATTTTCCAGGCGTGCTCGTCGCGATGCTGTTCGAACTCGGTTACAGCATCACGCAGAGAGGTGAAATCCAGTgg                                                                                                                                                                   >  1:17952/12‑239 (MQ=255)
                                                                                                                                                               catcgacgaggAGTTGTGCGCTAGTCGCAGCAAGTAACCAACTTCCAGTGCAGCGGTAATTTCATTGTCGAGGCTTTCATTTTCGCGAG‑ACAGGAGATTCCCCTCGCTGACTAATGCATCCGACACACCATTAACTGGCAGAGTGCGTCGTCGGTTGAGTTCGATTTTCCAGGCGTGCTCGTCGCGATGCTGTTCGAACTCGGTTACAGCATCACGCAGAGAGGTGAAATCCAGTGGCGCTACGAGAGCTTCGCGCATGCCATTACGTAAAAAGATCAGTTTGt                                                                                                                    <  1:1015237/275‑1 (MQ=255)
                                                                                                                                                               catcgacgaggAGTTGTGCGCTAGTCGCAGCAAGTAACCAACTTCCAGTGCAGCGGTAATTTCATTGTCGAGGCTTTCATTTTCGCGAG‑ACAGGAGATTCCCCTCGCTGACTAATGCATCCGACACACCATTAACTGGCAGAGTGCGTCGTCGGTTGAGTTCGATTTTCCAGGCGTGCTCGTCGCGATGCTGTTCGAACTCGGTTACAGCATCACGCAGAGAGGTGAAATCCAGTGGCGCTACGAGAGCTTCGCGCATGCCATTACGTAAAAAGATCAGTTTGt                                                                                                                    >  2:1015237/10‑284 (MQ=255)
                                                                                                                                                                 tcgacgaggAGTTGTGCGCTAGTCGCAGCAAGTAACCAACTTCCAGTGCAGCGGTAATTTCATTGTCGAGGCTTTCATTTTCGCGAG‑ACAGGAGATTCCCCTCGCTGACTAATGCATCCGACACACCATTAACTGGCAGAGTGCGTCGTCGGTTGAGTTCGATTTTCCAGGCGTGCTCGTCGCGATGCTGTTCGAACTCGGTTACAGCATCACGCAGAGAGGTGAAATCCAGTGGCGCTACGAGAGCTTCGCGCATGCCATTACGTAAAAAGATCAGTTTGTCGACg                                                                                                               >  1:327336/8‑287 (MQ=255)
                                                                                                                                                                 tcgacgaggAGTTGTGCGCTAGTCGCAGCAAGTAACCAACTTCCAGTGCAGCGGTAATTTCATTGTCGAGGCTTTCATTTTCGCGAG‑ACAGGAGATTCCCCTCGCTGACTAATGCATCCGACACACCATTAACTGGCAGAGTGCGTCGTCGGTTGAGTTCGATTTTCCAGGCGTGCTCGTCGCGATGCTGTTCGAACTCGGTTACAGCATCACGCAGAGAGGTGAAATCCAGTGGCGCTACGAGAGCTTCGCGCATGCCATTACGTAAAAAGATCAGTTTGTCGACg                                                                                                               <  2:327336/280‑1 (MQ=255)
                                                                                                                                                                   gccgatgggTTGTGGGCTGGTCGAGGCAGGTAACCACCTTCCATGTCAGCGGTAATTTCATTGTCGGGGCTTTCAGTTTCGCAGG‑ACCAGAGATTCCCCTCGCTGACTAATGCATCCGACACACCATTAACTGGCAGAGTGCGTCGTCGGTGGAGTTCGATTTTCCAGGCGTGCTCGTCGCGATGCTGTTCGAACTCGGGTACAGCATCACGCAGAGAGGTGAAATCCAGTGGCGCTACGAGAGCTTCGCGCATGCCATTACGTAAAAAGATCAGTTTGTCGACGTta                                                                                                            <  2:1983086/280‑1 (MQ=255)
                                                                                                                                                                   gacgaggAGTTGTGCGCTAGTCGCAGCAAGTAACCAACTTCCAGTGCAGCGGTAATTTCATTGTCGAGGCTTTCATTTTCGCGAG‑ACAGGAGATTCCCCTCGCTGACTAATGCATCCGACACACCATTAACTg                                                                                                                                                                                                                                                                       <  1:353037/128‑1 (MQ=255)
                                                                                                                                                                        ggAGTTGTGCGCTAGTCGCAGCAAGTAACCAACTTCCAGTGCAGCGGTAATTTCATTGTCGAGGCTTTCATTTTCGCGAG‑ACAGGAGATTCCCCTCGCTGACTAATGCATCCGACACACCATTAACTGGCAGAGTGCGTCGTCGGTTGAGTTCGATTTTCCAGGCGTGCTCGTCGCGATGCTGTTCGAACTCGGTTACAGCATCACGCAGAGAGGTGAAATCCAGTGGCGCTACGAGAGCTTCGCGCATGCCATTACGTAAAAAGATCAGTTTGTCGACGTTATACTGc                                                                                                      >  1:675930/1‑289 (MQ=255)
                                                                                                                                                                             tgtgCGCTAGTCGCAGCAAGTAACCAACTTCCAGTGCAGCGGTAATTTCATTGTCGAGGCTTTCATTTTCGCGAG‑ACAGGAGATTCCCCTCGCTGACTAATGCATCCGACACACCATTAACTGGCAGAGTGCGTCGTCGGTTGAGTTCGATTTTCCAGGCGTGCTCGTCGCGATGCTGTTCGAACTCGGTTACAGCATCACGCAGAGAGGTGAAATCCAGTGGCGCTACGAGAGCTTCGCGCATGCCATTACGTAAAAAGATCAGTTTGTCGACGTTATACTGCAAAt                                                                                                  <  1:726459/288‑1 (MQ=255)
                                                                                                                                                                               tgCGCTAGTCGCAGCAAGTAACCAACTTCCAGTGCAGCGGTAATTTCATTGTCGAGGCTTTCATTTTCGCGAG‑ACAGGAGATTCCCCTCGCTGACTAATGCATCCGACACACCATTAACTGGCAGAGTGCGTCGTCGGTTGAGTTCGATTTTCCAGGCGTGCTCGTCGCGATGCTGTTCGAACTCGGTTACAGCATCACGCAGAGAGGTGAAATCCAGTGGCGCTACGAGAGCTTCGCGCATGCCATTACGTAAAAAGATCAGTTTGt                                                                                                                    <  2:90526/268‑1 (MQ=255)
                                                                                                                                                                               tgCGCTAGTCGCAGCAAGTAACCAACTTCCAGTGCAGCGGTAATTTCATTGTCGAGGCTTTCATTTTCGCGAG‑ACAGGAGATTCCCCTCGCTGACTAATGCATCCGACACACCATTAACTGGCAGAGTGCGTCGTCGGTTGAGTTCGATTTTCCAGGCGTGCTCGTCGCGATGCTGTTCGAACTCGGTTACAGCATCACGCAGAGAGGTGAAATCCAGTGGCGCTACGAGAGCTTCGCGCATGCCATTACGTAAAAAGATCAGTTTGt                                                                                                                    >  1:90526/1‑268 (MQ=255)
                                                                                                                                                                                gcgcTAGTCGCAGCAAGTAACCAACTTCCAGTGCAGCGGTAATTTCATTGTCGAGGCTTTCATTTTCGCGAG‑ACAGGAGATTCCCCTCGCTGACTAATGCATCCGACACACCATTAACTGGCAGAGTGCGTCGTCGGTTGAGTTCGATTTTCCAGGCGTGCTCGTCGCGATGCTGTTCGAACTCGGTTACAGCATCACGCAGAGAGGTGAAATCCAGTGGCGCTACGAGAGCTTCGCTCATGCCATTACGTAACAAGATCAGTTAGTCGCGTTTATACTACAAATgtta                                                                                              >  2:2329153/1‑286 (MQ=255)
                                                                                                                                                                                    tAGTCGCAGCAAGTAACCAACTTCCAGTGCAGCGGTAATTTCATTGTCGAGGCTTTCATTTTCGCGAG‑ACAGGAGATTCCCCTCGCTGACTAATGCATCCGACACACCATTAACTGGCa                                                                                                                                                                                                                                                                    <  1:2140484/119‑1 (MQ=255)
                                                                                                                                                                                    tAGTCGCAGCAAGTAACCAACTTCCAGTGCAGCGGTAATTTCATTGTCGAGGCTTTCATTTTCGCGAG‑ACAGGAGATTCCCCTCGCTGACTAATGCATCCGACACACCATTAACTGGCAGAGTGCGTCGTCGGTTGAGTTCGATTTTCCAGGCGTGCTCGTCGCGATGCTGTTCGAACTCGGTTACAGCATCACGCAGAGAGGTGAAATCCAGTGGCGCTACGAGAGCTTCGCGCATGCCATTACGTAAAAAGATCAGTTTGTCGACGTTATACTGCAAATGCTTATCg                                                                                          >  1:2084108/1‑289 (MQ=255)
                                                                                                                                                                                      gTCGCAGCAAGTAACCAACTTCCAGTGCAGCGGTAATTTCATTGTCGAGGCTTTCATTTTCGCGAG‑ACAGGAGATTCCCCTCGCTGACTAATGCATCCGACACACCATTAACTGGCAGAGTGCGTCGTCGGTTGAGTTCGATTTTCCAGGCGTGCTCGTCGCGATGCTGTTCGAACTCGGTTACAGCATCACGCAGAGAGGTGAAATCCAGTGGCGCTACGAGAGCTTCGCGCATGCCATTACGTAAAAAGATCAGttt                                                                                                                      >  1:1743832/1‑259 (MQ=255)
                                                                                                                                                                                      gTCGCAGCAAGTAACCAACTTCCAGTGCAGCGGTAATTTCATTGTCGAGGCTTTCATTTTCGCGAG‑ACAGGAGATTCCCCTCGCTGACTAATGCATCCGACACACCATTAACTGGCAGAGTGCGTCGTCGGTTGAGTTCGATTTTCCAGGCGTGCTCGTCGCGATGCTGTTCGAACTCGGTTACAGCATCACGCAGAGAGGTGAAATCCAGTGGCGCTACGAGAGCTTCGCGCATGCCATTACGTAAAAAGATCAGttt                                                                                                                      <  2:1743832/259‑1 (MQ=255)
                                                                                                                                                                                      gTCGCAGCAAGTAACCAACTTCCAGTGCAGCGGTAATTTCATTGTCGAGGCTTTCATTTTCGCGAG‑ACAGGAGATTCCCCTCGCTGACTAATGCATCCGACACACCATTAACTGGCAGAGTGCGTCGTCGGTTGAGTTCGATTTTCCAGGCGTGCTCGTCGCGATGCTGTTCGAACTCGGTTACAGCATCACGCAGAGAGGTGAAATCCAGTGGCGCTACGAGAGCTTCGCGCATGCCATTACGTAAAAAGATCAGTTTGTCGCAGTTATACTGCAAATGCTTATCGa                                                                                         >  1:1965240/1‑288 (MQ=255)
                                                                                                                                                                                        cGCAGCAAGTAACCAACGTCCAGTGCAGCGGTAATTTCATTGTCGAGGCTTTCATTTTCGCGAG‑ACAGGAGATTCCCCTCGCTGACTAATGCATCCGACACACCATTAACTGGCAGAGTGCGTCGTCGGTTGAGTTCGATTTTCCAGGCGTGCTCGTCGCGATGCTGTTCGAACTCGGTTACAGCATCACGCAGAGAGGTGAAATCCAGTGGCGCTACGAGAGCTTCGCGCATGCCATTACGTAAAAAGATCAGTTTGTCGACGTTATACTGCAAATGCTTATCGAg                                                                                        <  2:1769239/287‑1 (MQ=255)
                                                                                                                                                                                              aaGTAACCAACTTCCAGTGCAGCGGTAATTTCATTGTCGAGGCTTTCATTTTCGCGAG‑ACAGGAGATTCCCCTCGCTGACTAATGCATCCGACACACCATTAACTGGCAGAGTGCGTCGTCGGTTGAGTTCGATTTTCCAGGCGTGCTCGTCGCGATGCTGTTCGAACTCGGTTACAGCATCACGCAGAGAGGTGAAATCCAGTGGCGCTACGAGAGCTTCGCGCATGCCATTACGTAAAAAGATCAGTTTGTCGACGTTATACTGCAAATGCTTATCGAGCGCGTTgg                                                                                <  1:1136688/289‑1 (MQ=255)
                                                                                                                                                                                                     cAACTTCCAGTGCAGCGGTAATTTCATTGTCGAGGCTTTCATTTTCGCGAG‑ACAGGAGATTCCCCTCGCTGACTAATGCATCCGACACACCATTAACTGGCAGAGTGCGTCGTCGGTTGAGTTCGATTTTCCAGGCGTGCTCGTCGCGATGCTGTTCGAACTCGGTTACAGCATCACGCAGAGAGGTGAAATCCAGTGGCGCTACGAGAGCTTCGCGCATGCCATTACGTAAAAAGATCAGTTTGTCGACGTTATACTGCAAATGCTTATCGAGCGCGTTGGCAACGtt                                                                         <  1:2637394/289‑1 (MQ=255)
                                                                                                                                                                                                             aGTGCAGCGGTAATTTCATTGTCGAGGCTTTCATTTTCGCGAG‑ACAGGAGATTCCCCTCGCTGACTAATGCATCCGACACACCATTAACTGGCAGAGTGCGTCGTCGGTTGAGTTCGATTTTCCAGGCGTGCTCGTCGCGATGCTGTTCGAACTCGGTTACAGCATCACGCAGAGAGGTGAAATCCAGTGGCGCTACGAGAGCTTCGCGCATGCCATTACGTAAAAAGATCAGTTTGTCGACGTTATACTGCAAATGCTTATCGAGCGCGTTGGCAACGTTTTCCAgat                                                                 >  1:1102856/1‑289 (MQ=255)
                                                                                                                                                                                                                 cAGCGGTAATTTCATTGTCGAGGCTTTCATTTTCGCGAG‑ACAGGAGATTCCCCTCGCTGACTAATGCATCCGACACACCATTAACTGGCAGAGTGCGTCGTCGGTTGAGTTCGATTTTCCAGGCGTGCTCGTCGCGATGCTGTTCGAACTCGGTTACAGCATCACGCAGAGAGGTGAAATCCAGTGGCGCTACGAGAGCTTCGCGCATGCCATTACGTAAAAAGATCAGTTTGTCGACGTTATACTGCAAATGCTTATCGAGCGCGTTGGCAACGTTTTCCa                                                                    <  1:1479908/282‑1 (MQ=255)
                                                                                                                                                                                                                   gCGGTAATTTCATTGTCGAGGCTTTCATTTTCGCGAG‑ACAGGAGATTCCCCTCGCTGACTAATGCATCCGACACACCATTAACTGGCAGAGTGCGTCGTCGGTTGAGTTCGATTTTCCAGGCGTGCTCGTCGCGATGCTGTTCGAACTCGGTTACAGCATCACGCAGAGAGGTGAAATCCAGt                                                                                                                                                                     >  2:976147/1‑183 (MQ=255)
                                                                                                                                                                                                                   gCGGTAATTTCATTGTCGAGGCTTTCATTTTCGCGAG‑ACAGGAGATTCCCCTCGCTGACTAATGCATCCGACACACCATTAACTGGCAGAGTGCGTCGTCGGTTGAGTTCGATTTTCCAGGCGTGCTCGTCGCGATGCTGTTCGAACTCGGTTACAGCATCACGCAGAGAGGTGAAATCCAGt                                                                                                                                                                     <  1:976147/183‑1 (MQ=255)
                                                                                                                                                                                                                   gCGGTAATTTCATTGTCGAGGCTTTCATTTTCGCGAG‑ACAGGAGATTCCCCTCGCTGACTAATGCATCCGACACACCATTAACTGGCAGAGTGCGTCGTCGGTTGAGTTCGATTTTCCAGGCGTGCTCGTCGCGATGCTGTTCGAACTCGGTTACAGCATCACGCAGAGAGGTGAAATCCAGTGGCGCTACGAGAGCTTCGCGCATGCCATTACGTAAAAAGATCAGTTTGTCGACGTTATACTGCAAATGCTTATCGAGCGCGTTGGCAACGTTTTCCAGATGATTAc                                                           >  1:1720908/1‑289 (MQ=255)
                                                                                                                                                                                                                    cGGTAATTTCATTGTCGAGGCTTTCATTTTCGCGAG‑ACAGGAGATTCCCCTCGCTGACTAATGCATCCGACACACCATTAACTGGCAGAGTGCGTCGTCGGTTGAGTTCGATTTTCCAGGCGTGCTCGTCGCGATGCTGTTCGAACTCGGTTACAGCATCACGCAGAGAGGTGAAATCCAGTGGCGCTACGAGAGCTTCGCGCATGCCATTACGTAAAAAGATCAGTTTGTCGACGTTATACTGCAAATGCTTATCGAGCGCGTTGGCAACGTTTTCCAGATGATTAc                                                           >  1:2692176/1‑288 (MQ=255)
                                                                                                                                                                                                                     ggTAATTTCATTGTCGAGGCTTTCATTTTCGCGAG‑ACAGGAGATTCCCCTCGCTGACTAATGCATCCGACACACCATTAACTGGCAGAGTGCGTCGTCGGTTGAGTTCGATTTTCCAGGCGTGCTCGTCGCGATGCTGTTCGAACTCGGTTACAGCATCACGCAGAGAGGTGAAATCCAGTGGCGCTACGAGAGCTTCGCGCATGCCATTACGTAAAAAGATCAGTTTGTCGACGTTATACTGCAAATGCTTATCGAGCGCGTTGGCAACGTTTTCCAGATGATTACg                                                          <  1:2721759/288‑1 (MQ=255)
                                                                                                                                                                                                                         atctCACTGTAGAGGTTTTCATTGTC‑TGAGAACAGGGGGTTCCCCTCGTCGATTAAGGGATCCGACAAACCATTAACTGGCAGAGTGCGTCGTCGGTTGAGTTCGATTTTCCAGGCGAGCTCGTCGCGATTCTGTTCGAACTCGGTTACAGCATCACGCAGAGAGGTGAAAGCCAGTGGCGCTACGAGAGCTTCGCGCATGCCATTACGTAAAAAGATCAGTTTGTCGACGTTATACTGCAAATGCTTATCGAGCGCGTTGGCAACGTTTTCCAGATGATTACgctggc                                                     <  2:344708/286‑1 (MQ=255)
                                                                                                                                                                                                                         aTTTCATTGTCGAGGCTTTCATTTTCGCGGG‑ACAGGAGATTCCCCTCGCTGACTAATGCATCCGACACACCATTAACTGGCAGAGTGCGTCGTCGGTTGAGTTCGATTTTCCAGGCGTGCTCGTCGCGATGCTGTTCGAACTCGGTTACAGCATCACGCAGAGAGGTGAAATCCAGTGGCGCTACGAGAGCTTCGCGCATGCCATTACGTAAAAAGATCAGTTTGTCGACGTTATACTGCAAATGCTTATCGAGCGCGTTGGCAACGTTTTCCAGATGATTACgctggc                                                     <  1:2099099/289‑1 (MQ=255)
                                                                                                                                                                                                                         aTTTCATTGTCGAGGCTTTCATTTTCGCGAG‑ACAGGAGATTCCCCTCGCTGACTAATGCATCCGACACACCATTAACTGGCAGAGTGCGTCGTCGGTTGAGTTCGATTTTCCAGGCGTGCTCGTCGCGATGCTGTTCGAACTCGGTTACAGCATCACGCAGAGAGGTGAAATCCAGTGGCGCTACGAGAGCTTCGCGCATGCCATTACGTAAAAAGATCAGTTTGTCGACGTTATACTGCAAATGCTTATCGAGCGCGTTGGTAACGTTTTCCAGATGATTACgctggc                                                     <  2:41052/289‑1 (MQ=255)
                                                                                                                                                                                                                          tttCATTGTCGAGGCTTTCATTTTCGCGGG‑ACAGGAGATTCCCCTCGCTGACTAATGCATCCGACCCACCATTAACTGGCAGAGTGCGTCGTCGGTTGAGTTCGATTTTCCAGGCGTGCTCGTCGCGATGCTGTTCGAACTCGGTTACAGCATCACGCAGAGAGGTGAAATCCAGTGGCGCTACGAGAGCTTCGCGCATGCCATTACGTAAAAAGATCAGTTTGTCGACGTTATACTGCAAATGCTTATCGAGCGCGTTGGCAACGTTTTCCAGATGATTACgctggct                                                    <  1:437797/289‑1 (MQ=255)
                                                                                                                                                                                                                           ttCATTGTCGAGGCTTTCATTTTCGCGAG‑ACAGGAGATTCCCCTCGCTGACTAATGCATCCGACACACCATTAACTGGCAGAGTGCGTCGTCGGTTGAGTTCGATTTTCCAGGCGTGCTCGTCGCGATGCTGTTCGAACTCGGTTACAGCATCACGCAGAGAGGTGAAATCCAGTGGCGCTACGAGAGCTTCGCGCATGCCATTACGTAAAAAGATCAGTTTGTCGACGTTATACTGCAAATGCTTATCGAGCGCGTTGGCAACGTTTTCCAGATGATTACgctggctg                                                   <  2:2131678/289‑1 (MQ=255)
                                                                                                                                                                                                                                tGTCGAGGCTTTCATTTTCGCGAG‑ACAGGAGATTCCCCTCGCTGACTAATGCATCCGACACACCATTAACTGGCAGAGTGCGTCGTCGGTTGAGTTCGATTTTCCAGGCGTGCTCGTCGCGATGCTGTTCGAACTCGGTTACAGCATCACGCAGAGAGGTGAAATCCAGTGGCGCTACGAGAGCTTCGCGCATGCCATTACGTAAAAAGATCAGTTTGTCGACGTTATACTGCAAATGCTTATCGAGCGCGTTGGCAACGTTTTCCAGATGATTACGCTGGCTGGAGat                                              <  1:1110776/289‑1 (MQ=255)
                                                                                                                                                                                                                                        cTTTCATTTTCGCGAG‑ACAGGAGATTCCCCTCGCTGACTAATGCATCCGACACACCATTAACTGGCAGAGTGCGTCGTCGGTTGAGTTCGATTTTCCAGGCGTGCTCGTCGCGATGCTGTTCGAACTCGGTTACAGCATCACGCAGAGAGGTGAAATCCAGTGGCGCTACGAGAGCTTCGCGCATGCCATTACGTAAAAAGATCAGTTTGTCGACGTTATACTGCAAATGCTTATCGAGCGCGTTGGCAACGTTTTCCAGATGATTACGCTGGCTGGAGATATAGGCa                                       <  1:229340/288‑1 (MQ=255)
                                                                                                                                                                                                                                        cTTTCATTTTCGCGAG‑ACAGGAGATTCCCCTCGCTGACTAATGCATCCGACACACCATTAACTGGCAGAGTGCGTCGTCGGTTGAGTTCGATTTTCCAGGCGTGCTCGTCGCGATGCTGTTCGAACTCGGTTACAGCATCACGCAGAGAGGTGAAATCCAGTGGCGCTACGAGAGCTTCGCGCATGCCATTACGTAAAAAGATCAGTTTGTCGACGTTATACTGCAAATGCTTATCGAGCGCGTTGGCAACGTTTTCCAGATGATTACGCTGGCTGGAGATATAGGCa                                       <  2:466109/288‑1 (MQ=255)
                                                                                                                                                                                                                                          ttCATTTTCGCGAG‑ACAGGAGATTCCCCTCGCTGACTAATGCATCCGACACACCATTAACTGGCAGAGTGCGTCGTCGGTTGAGTTCGATTTTCCAGGCGTGCTCGTCGCGATGCTGTTCGAACTCGGTTACAGCATCACGCAGAGAGGTGAAATCCAGTGGCGCTACGAGAGCTTCGCGCATGCCATTACGTAAAAAGATCAGTTTGTCGACGTTATACTGCAAATGCTTATCGAGCGCGTTGGCAACGTTTTCCAGATGATTACGCTGGCTGGAGATATAGGCATCt                                    >  1:1833333/1‑289 (MQ=255)
                                                                                                                                                                                                                                            cATTTTCGCGAG‑ACAGGAGATTCCCCTCGCTGACTAATGCATCCGACACACCATTAACTGGCAGAGTGCGTCGTCGGTTGAGTTCGATTTTCCAGGCGTGCTCGTCGCGATGCTGTTCGAACTCGGTTACAGCATCACGCAGAGAGGTGAAATCCAGTGGCGCTACGAGAGCTTCGCGCATGCCATTACGTAAAAAGATCAGTTTGTCGACGTTATACTGCAAATGCTTATCGAGCGCGTTGGCAACGTTTTCCAGATGATTACGCTGGCTGGAGATATAGGCATCtt                                   >  1:2534762/1‑288 (MQ=255)
                                                                                                                                                                                                                                            cATTTTCGCGAG‑ACAGGAGATTCCCCTCGCTGACTAATGCATCCGACACACCATTAACTGGCAGAGTGCGTCGTCGGTTGAGTTCGATTTTCCAGGCGTGCTAGTCGCGATGCTGTTCGAACTCGGTTACAGCATCACGCAGAGAGGTGAAATCCAGTGGCGCTACGAGAGCTTCGCGCATGCCATTACGTAAAAAGATCAGTTTGTCGACGTTATACTGCAAATGCTTATCGAGCGCGTTGGCAACGttt                                                                        >  2:2438444/1‑251 (MQ=255)
                                                                                                                                                                                                                                            cATTTTCGCGAG‑ACAGGAGATTCCCCTCGCTGACTAATGCATCCGACACACCATTAACTGGCAGAGTGCGTCGTCGGTTGAGTTCGATTCTCCAGGCGTGCTCGTCGCGATg                                                                                                                                                                                                                   >  2:2172018/1‑112 (MQ=255)
                                                                                                                                                                                                                                                ttCGCGGG‑CCAGGAGATTCCCCTCGCTGACTAAGGCATCCGACAAACCATTAACTGGCAGAGTGCGTCGTCGGTTGAGTTCGATTTTCCAGGCGTGCTCGGCGCGATGCTGTTCGAACTCGGTTACAGCATCACGCAGAGAGGTGAAATCCAGTGGCGCTACGAGAGCTTCGCGCATGCCATTACGTAAAAAGATCAGTTTGTCGACGTTATACTGCAAATGCTTATCGAGCGCGTTGGCAACGTTTTCCAGATGATTACGCTGGCTGGAGATATAGGCATCTTCCAGc                              <  2:1121410/289‑1 (MQ=255)
                                                                                                                                                                                                                                                 tCGCGGG‑ACAGGAGATTCCCCTCGCTGACTAATGCATCCGACACACCATTAACTGGCAGAGTGCGTCGTCGGTTGAGTTCGATTTTCCAGGCGTGCTCGTCGCGATGCTGTTCGAACTCGGTTACAGCATCACGCAGAGAGGTGAAATCCAGTGGCGCTACGAGAGCTTCGCGCATGCCATTACGTAAAAAGATCAGTTTGTCGACGTTATACTGCAAATGCTTATCGAGCGCGTTGGCAACGTTTTCCAGATGATTACgctggct                                                    <  2:365857/266‑1 (MQ=255)
                                                                                                                                                                                                                                                 tCGCGAG‑ACAGGAGATTCCCCTCGCTGACTAATGCATCCGACACACCATTAACTGGCAGAGTGCGTCGTCGGTTGAGTTCGATTTTCCAGGCGTGCTCGTCGCGATGCTGTTCGAACTCGGTTACAGCATCACGCAGAGAGGTGAAATCCAGTGGCGCTACGAGAGCTTCGCGCATGCCATTACGTAAAAAGATCAGTTTGTCGACGTTATACTGCAAATGCTTATCGAGCGCGTTGGCAACGTTTTCCAGATGATTACgctggct                                                    >  1:365857/1‑266 (MQ=255)
                                                                                                                                                                                                                                                                  tCCCCTCGCTGACTAATGCATCCGACACACCATTAACTGGCAGAGTGCGTCGTCGGTTGAGTTCGATTTTCCAGGCGTGCTCGTCGCGATGCTGTTCGAACt                                                                                                                                                                                                        >  1:2124762/1‑102 (MQ=255)
                                                                                                                                                                                                                                                                       tCGCTGACTAATGCATCCGACACACCATTAACTGGCAGAGTGCGTCGTCGGTTGAGTTCGATTTTCCAGGCGTGCTCGTCGCGATGCTGtt                                                                                                                                                                                                              <  2:271514/91‑1 (MQ=255)
                                                                                                                                                                                                                                                                        cGCTGACTAATGCATCCGACACACCATTAACTGGCAGAGTGCGTCGTCGGTTGAGTTCGATTTTCCAGGCGTGCTCGTCGCGATGCTGTTCGAACTCGGTTACAGCATCACGCAGAGAGGTGAAATCCAGTGGCGCTACGAGAGCTTCGCGCATGCCATTACGTAAAAAGATCAGTTTGTCGACGTTATACTGCAAATGCTTATCGAGCGCGTTGGCAACGTTTTCCAGATGATTACg                                                          <  1:386097/238‑1 (MQ=255)
                                                                                                                                                                                                                                                                         gCTGACTAATGCATCCGACACACCATTAACTGGCAGAGTGCGTCGTCGGTTGAGTTCGATTTTCCAGGCGTGCt                                                                                                                                                                                                                             <  2:1843595/74‑1 (MQ=255)
                                                                                                                                                                                                                                                                         gCTGACTAATGCATCCGACACACCATTAACTGGCAGAGTGCGTCGTCGGTTGAGTTCGATTTTCCAGGCGTGCTCGTCGCGATGCTGTTCGAACTCGGTTACAGCATCACGCAGAGAGGTGAAATCCAGTGGCGCTACGAGAGCTTCGCGCATGCCATTACGTAAAAAGATCAGTTTGTCGACGTTATACTGCAAATGCTTATCGAGCGCGTTGGCAACGTTTTCCAGATGATTACgctggctg                                                   >  2:280926/1‑244 (MQ=255)
                                                                                                                                                                                                                                                                         gCTGACTAATGCATCCGACACACCATTAACTGGCAGAGTGCGTCGTCGGTTGAGTTCGATTTTCCAGGCGTGCTCGTCGCGATGCTGTTCGAACTCGGTTACAGCATCACGCAGAGAGGTGAAATCCAGTGGCGCTACGAGAGCTTCGCGCATGCCATTACGTAAAAAGATCAGTTTGTCGACGTTATACTGCAAATGCTTATCGAGCGCGTTGGCAACGTTTTCCAGATGATTACgctggctg                                                   <  1:280926/244‑1 (MQ=255)
                                                                                                                                                                                                                                                                             aCTAATGCGTCCGACACACCATTAACTGGCAGAGTGCGTCGTCGGTTGAGTTCGATTTTCCAGGCGTGCTCGTCGCGATGCTGTTCGAACTCGGTTACAGCATCACGCAGAGAGGTGAAATCCAGTGGCGCTACGAGAGCTTCGCGCATGCCATTACGTAAAAAGATCAGTTTGTCGACGTTATACTGCAAATGCTTATCGAGCGCGTTGGCAACGTTTTCCAGATGATTACGCTGGCTGGAGATATAGGCATCTTCCAGCACCACCACTTCACGCCAGGTGAGCAAgg  >  2:1648744/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                                        |||                                                                                                                                                                                                                                                                                   
CCAGCGTACCGCGCGGTGACGATTTTCTCGTTGACTATGGCCAATAAACCAGGGTTGGGTGACATAGCCGTAATAACGCGTTGGAACATTGCGCGTAAACAAGGTCGGCTGCGTGCTAACGTAAAATCCGGCACGGCTGACATACATCGCCTGTTCAACCATGCTGCTGGAGTTGTGCGCTAGTCGCAGCAAGTAACCAACTTCCAGTGCAGCGGTAATTTCATTGTCGAGGCTTTCATTTTCGCGAG‑ACAGGAGATTCCCCTCGCTGACTAATGCATCGCTCACACCATTAACTGGCAGAGTGCGTCGTCGGTTGAGTTCGATTTTCCAGGCGTGCTCGTCGCGATGCTGTTCGAACTCGGTTACAGCATCACGCAGAGAGGTGAAATCCAGTGGCGCTACGAGAGCTTCGCGCATGCCATTACGTAAAAAGATCAGTTTGTCGACGTTATACTGCAAATGCTTATCGAGCGCGTTGGCAACGTTTTCCAGATGATTACGCTGGCTGGAGATATAGGCATCTTCCAGCACCACCACTTCACGCCAGGTGAGCAAGG  >  CP042583/1664816‑1665372

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A