Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A2 F167 I0 R1 193 197.0 4372636 93.1% 4070924 215.6

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
MC JC NC_007779 2,910,136 Δ12 bp 100% coding (2161‑2172/2235 nt) Y75_RS14515 ← GTP pyrophosphokinase

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_007779 2910136 2910147 12 213 [0] [0] 213 Y75_RS14515 GTP pyrophosphokinase

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_007779 = 29101350 (0.000)200 (1.160) 89/394 NT 100% coding (2173/2235 nt) Y75_RS14515 GTP pyrophosphokinase
?NC_007779 2910148 = 0 (0.000)coding (2160/2235 nt) Y75_RS14515 GTP pyrophosphokinase

GATK/CNVnator alignment

N/A