Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A8 F1 I1 R1
|
771 |
44.8 |
2153074 |
94.1% |
2026042 |
109.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,419,403 |
C→T |
pseudogene (297/960 nt) |
yhdW → |
pseudogene, ABC transporter periplasmic binding protein family,putative transport, Not classified, putative periplasmic binding transport protein, periplasmic‑binding component of ABC superfamily |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,419,403 | 0 | C | T | 100.0%
| 179.6
/ NA
| 57 | pseudogene (297/960 nt) | yhdW | pseudogene, ABC transporter periplasmic binding protein family,putative transport, Not classified, putative periplasmic binding transport protein, periplasmic‑binding component of ABC superfamily |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (32/25); total (32/25) |
TACCCCGCTCACTGCAAAAGAACGCTTCACCGCTTTACAGTCAGGGGAGGTGGATTTGCTCTCCCGTAATACGACCTGGACTTCATCTCGCGATGCCGGGATGGGAATGGCATTTACCGGCGTCACTTATTACGACGGCATTGGCTTCCTGACGCACGATAAAGCGGGGCTAAAAAGCGCGAAAGAACTGGATGGCGCTACCGTCTGTATTCAGGCGGGTACTGATACCGAACTCAACGTCGCCGACTACTTCAA > NC_000913/3419283‑3419537
|
taCCCCGCTCACTGCAAAAGAACGCTTCACCGCTTTACAGTCAGGGGAGGTGGATTTGCTCTCCCGTAATACGACCTGGACTTCATCTCGCGATGCCGGGATGGGAATGGCATTTACCGGTGTCACTTATTACGACGGc > 1:720029/1‑139 (MQ=255)
taCCCCGCTCACTGCAAAAGAACGCTTCACCGCTTTACAGTCAGGGGAGGTGGATTTGCTCTCCCGTAATACGACCTGGACTTCATCTCGCGATGCCGGGATGGGAATGGCATTTACCGGTGTCACTTATTACGACGGc > 1:279486/1‑139 (MQ=255)
ccccGCTCACTGCAAAAGAACGCTTCACCGCTTTACAGTCAGGGGAGGTGGATTTGCTCTCCCGTAATACGACCTGGACTTCATCTCGCGATGCCGGGATGGGAATGGCATTTACCGGTGTCACTTATTACGACGGCAt < 1:399284/139‑1 (MQ=255)
cccGCTCACTGCAAAAGAACGCTTCACCGCTTTACAGTCAGGGGAGGTGGATTTGCTCTCCCGTAATACGACCTGGACTTCATCTCGCGATGCCGGGATGGGAATGGCATTTACCGGTGTCACTTATTACGACGGCAtt > 1:376350/1‑139 (MQ=255)
tCACTGCAAAAGAACGCTTCACCGCTTTACAGTCAGGGGAGGTGGATTTGCTCTCCCGTAATACGACCTGGACTTCATCTCGCGATGCCGGGATGGGAATGGCATTTACCGGTGTCACTTATTACGACGGCATTGGCtt > 2:819063/1‑139 (MQ=255)
tCACTGCAAAAGAACGCTTCACCGCTTTACAGTCAGGGGAGGTGGATTTGCTCTCCCGTAATACGACCTGGACTTCATCTCGCGATGCCGGGATGGGAATGGCATTTACCGGTGTCACTTATTACGACGGCATTGGCtt > 1:646365/1‑139 (MQ=255)
aCTGCAAAAGAACGCTTCACCGCTTTACAGTCAGGGGAGGTGGATTTGCTCTCCCGTAATACGACCTGGACTTCATCTCGCGATGCCGGGATGGGAATGGCATTTACCGGTGTCACtt > 2:832720/1‑118 (MQ=255)
aCTGCAAAAGAACGCTTCACCGCTTTACAGTCAGGGGAGGTGGATTTGCTCTCCCGTAATACGACCTGGACTTCATCTCGCGATGCCGGGATGGGAATGGCATTTACCGGTGTCACtt < 1:832720/118‑1 (MQ=255)
cTGCAAAAGAACGCTTCACCGCTTTACAGTCAGGGGAGGTGGATTTGCTCTCCCGTAATACGACCTGGACTTCATCTCGCGATGCCGGGATGGGAATGGCATTTACCGGTGTCACTTATTACGACGGc > 2:327776/1‑128 (MQ=255)
cTGCAAAAGAACGCTTCACCGCTTTACAGTCAGGGGAGGTGGATTTGCTCTCCCGTAATACGACCTGGACTTCATCTCGCGATGCCGGGATGGGAATGGCATTTACCGGTGTCACTTATTACGACGGc < 1:327776/128‑1 (MQ=255)
tGCAAAAGAACGCTTCACCGCTTTACAGTCAGGGGAGGTGGATTTGCTCTCCCGTAATACGACCTGGACTTCATCTCGCGATGCCGGGATGGGAATGGCATTTACCGGTGTCa > 1:337916/1‑113 (MQ=255)
tGCAAAAGAACGCTTCACCGCTTTACAGTCAGGGGAGGTGGATTTGCTCTCCCGTAATACGACCTGGACTTCATCTCGCGATGCCGGGATGGGAATGGCATTTACCGGTGTCACTTATTACGACGGCATTGGCTTCCTg > 2:151236/1‑139 (MQ=255)
tGCAAAAGAACGCTTCACCGCTTTACAGTCAGGGGAGGTGGATTTGCGCTCCCGTAATACGACCTGGACTTCATCTCGCGATGCCGGGATGGGAATGGCATTTACCGGTGTCa < 2:337916/113‑1 (MQ=255)
gCAAAAGAACGCTTCACCGCTTTACAGTCAGGGGAGGTGGATTTGCTCTCCCGT‑ATACGACCTGGACTTCATCTCGCGATGCCGGGATGGGAATGGCATTTACCGGTGTCACTTATTACGACGGCATTGGCTTCCTGAc > 2:103534/1‑139 (MQ=255)
aaaaGAACGCTTCACCGCTTTACAGTCAGGGGAGGTGGATTTGCTCTCCCGTAATACGACCTGGACTTCATCTCGCGATGCCGGGATGGGAATGGCATTTACCGGTGTCACTTATTACGACGGCATTGGCTTCCTGACg < 1:363174/139‑1 (MQ=255)
aaGAACGCTTCACCGCTTTACAGTCAGGGGAGGTGGATTTGCTCTCCCGTAATACGACCTGGACTTCATCTCGCGATGCCGGGATGGGAATGGCATTTACCGGTGTCACTTATTACGACGGCATTGGCTTCCTGACGCa > 2:1043470/1‑139 (MQ=255)
aGAACGCTTCACCGCTTTACAGTCAGGGGAGGTGGATTTGCTCTCCCGTAATACGACCTGGACTTCATCTCGCGATGCCGGGATGGGAATGGCATTTACCGGTGTCACTTATTACGACGGCATTGGCTTCCTGACGCAc > 1:694375/1‑139 (MQ=255)
cGCTTCACCGCTTTACAGTCAGGGGAGGTGGATTTGCTCTCCCGTAATACGACCTGGACTTCATCTCTCGATGCCGGGATGGGAATGGCATTTACCGGTGTCACtt > 2:77843/1‑106 (MQ=255)
cGCTTCACCGCTTTACAGTCAGGGGAGGTGGATTTGCTCTCCCGTAATACGACCTGGACTTCATCTCGCGATGCCGGGATGGGAATGGCATTTACCGGTGTCACtt < 1:77843/106‑1 (MQ=255)
cGCTTCACCGCTTTACAGTCAGGGGAGGTGGATTTGCTCTCCCGTAATACGACCTGGACTTCATCTCGCGATGCCGGGATGGGAATGGCATTTACCGGTGTCACTTATTACGACGGCATTGGCTTCCTGACGCa < 1:907384/134‑1 (MQ=255)
cGCTTCACCGCTTTACAGTCAGGGGAGGTGGATTTGCTCTCCCGTAATACGACCTGGACTTCATCTCGCGATGCCGGGATGGGAATGGCATTTACCGGTGTCACTTATTACGACGGCATTGGCTTCCTGACGCa > 2:907384/1‑134 (MQ=255)
aGTCAGGGGAGGTGGATTTGCTCTCCCGTAATACGACCTGGACTTCATCTCGCGATGCCGGGATGGGAATGGCATTTACCGGTGTCACTTATTACGACGGCATTGGCTTCCTGACGCACGATAAAGCGGGGCTAAAAAg > 1:140051/1‑139 (MQ=255)
tCAGGGGAGGTGGATTTGCTCTCCCGTAATACGACCTGGACTTCATCTCGCGATGCCGGGATGGGAATGGCATTTACCGGTGTCACTTATTACGACGGCATTGGCTTCCTGACGCACGATAAAGCGGGGCTAAAAAgcg > 2:664746/1‑139 (MQ=255)
gTGGATTTGCTCTCCCGTAATACGACCTGGACTTCATCTCGCGATGCCGGGATGGGAATGGCATTTACCGGTGTCACTTATTacga < 1:731387/86‑1 (MQ=255)
gTGGATTTGCTCTCCCGTAATACGACCTGGACTTCATCTCGCGATGCCGGGATGGGAATGGCATTTACCGGTGTCACTTATTacga > 2:731387/1‑86 (MQ=255)
gTGGATTTGCTCTCCCGTAATACGACCTGGACTTCATCTCGCGATGCCGGGATGGGAATGGCATTTACCGGTGTCACTTATTACGACGGCATTGGCTTCCTGACGCACGATAAAGCGGGGCTAAAAAGCGCGAAAGAAc > 2:246746/1‑139 (MQ=255)
tctcCCGTAATACGACCTGGACTTCATCTCGCGATGCCGGGATGGGAATGGCATTTACCGGTGTCACTTATTACGACGGCATTGGCTTCCTGACGCACGATAAAGCGGGGCTAAAAAGCGCGAAAGAACTGGATGgcgc > 2:968029/1‑139 (MQ=255)
cccGTAATACGACCTGGACTTCATCTCGCGATGCCGGGATGGGAATGGCATTTACCGGTGTCACTTATTACGACGGCATTGGCTTCCTGACGCACGATAAAGCGGGGCTAAAAAGCGCGAAAGAACTGGATGGCGCTAc > 2:187275/1‑139 (MQ=255)
cccGTAATACGACCTGGACTTCATCTCGCGATGCCGGGATGGGAATGGCATTTACCGGTGTCACTTATTACGACGGCATTGGCTTCCTGACGCACGATAAAGCGGGGCTAAAAAGCGCGAAAGAACTGGATGGCGCTAc < 1:968029/139‑1 (MQ=255)
cccGTAATACGACCTGGACTTCATCTCGCGATGCCGGGATGGGAATGGCATTTACCGGTGTCACTTATTACGACGGCATTGGCTTCCTGACGCACGATAAAGCGGGGCTAAAAAGCGCGAAAGAACTGGATGGCGCTAc < 1:1043470/139‑1 (MQ=255)
gACCTGGACTTCATCTCGCGATGCCGGGATGGGAATGGCATTTACCGGTGTCACTTATTACGACGGCATTGGCTTCCTGACGCACGATAAAGCGGGGCTAAAAAGCGCGAAAGAACTGGATGGCGCTACCGTCTGTAtt < 2:694375/139‑1 (MQ=255)
aCCTGGACTTCATCTCGCGATGCCGGGATGGGAATGGCATTTACCGGTGTCTCTTATTACGACGGCATTGGCTTCCTGACGCACGATAAAGCGGGGCTAAAAAGCGCGAAAGAACTGGATGGCGCTAc < 2:768213/128‑1 (MQ=255)
aCCTGGACTTCATCTCGCGATGCCGGGATGGGAATGGCATTTACCGGTGTCACTTATTACGACGGCATTGGCTTCCTGACGCACGATAAAGCGGGGCTAAAAAGCGCGAAAGAACTGGATGGCGCTAc > 1:768213/1‑128 (MQ=255)
aCCTGGACTTCATCTCGCGATGCCGGGATGGGAATGGCATTTACCGGTGTCACTTATTACGACGGCATTGGCTTCCTGACGCACGATAAAGCGGGGCTAAAAAGCGCGAAAGAACTGGATGGCGCTACCGTCTGTATTc > 1:120697/1‑139 (MQ=255)
aCCTGGACTTCATCTCGCGATGCCGGGATGGGAATAGCATTTACCGGTGTCACTTATTACGACGGCATTGGCTTCCTGACg > 2:770313/1‑81 (MQ=255)
aCCTGGACTTCATCTCGCGATGCCGGGATGGGAATAGCATTTACCGGTGTCACTTATTACGACGGCATTGGCTTCCTGACg < 1:770313/81‑1 (MQ=255)
cTGGACTTCATCTCGCGATGCCGGGATGGGAATGGCATTTACCAGTGTCACTTATTACGACGGCATTGGCTTCCTGACGCACGATAAAGCGGGGCTAAAAAGCGCGAAAGAACTGGATGGCGCTACCGTCTGTATTCAg > 1:9472/1‑139 (MQ=255)
tGGACTTCATCTCGCGATGCCGGGATGGGAATGGCATTTACCGGTGTCACTTATTACGACGGCATTGGCTTCCTGACGCACGATAAAGCGGGGCTAAAAAGCGCGAAAGAACTGGATGGCGCTACCGTCTGTATTCAgg < 2:501326/139‑1 (MQ=255)
tGGACTTCATCTCGCGATGCCGGGATGGGAATGGCATTTACCGGTGTCACTTATTACGACGGCATTGGCTTCCTGACGCACGATAAAGCGGGGCTAAAAAGCGCGAAAGAACTGGATGGCGCTACCGTCTGTATTCAgg < 2:279486/139‑1 (MQ=255)
tGGACTTCATCTCGCGATGCCGGGATGGGAATGGCATTTACCGGTGTCACTTATTACGACGGCATTGGCTTCCTGACGCACGATAAAGCGGGGCTAAAAAGCGCGAAAGAACTGGATGGCGCTACCGTCTGTATTCAgg < 1:819063/139‑1 (MQ=255)
gACTTCATCTCGCGATGCCGGGATGGGAATGGCATTTACCGGTGTCACTTATTACGACGGCATTGGCTTCCTGACGCACGATAAAGCGGGGCTAAAAAGCGCGAAAGAACTGGATGGCGCTACCGTCTGTATTCAGGCg < 1:151236/139‑1 (MQ=255)
cATCTCGCGATGCCGGGATGGGAATGGCATTTACCGGTGTCACTTATTACGACGGCATTGGCTTCCTGACGCACGATAAAGCGGGGCTAAAAAGCGCGa > 1:1065429/1‑99 (MQ=255)
cATCTCGCGATGCCGGGATGGGAATGGCATTTACCGGTGTCACTTATTACGACGGCATTGGCTTCCTGACGCACGATAAAGCGGGGCTAAAAAGCGCGa < 2:1065429/99‑1 (MQ=255)
cgcgATGCCGGGATGGGAATGGCATTTACCGGTGTCACTTATTACGACGGCATTGGCTTCCTGACg > 2:594282/1‑66 (MQ=255)
cgcgATGCCGGGATGGGAATGGCATTTACCGGTGTCACTTATTACGACGGCATTGGCTTCCTGACg < 1:594282/66‑1 (MQ=255)
cgcgATGCCGGGATGGGAATGGCATTTACCGGTGTCACTTATTACGACGGCATTGGCTTCCTGACGCACGATAAAGCGGGGCTAAAAAGCGCGAAAGAACTGGATGGCGCTACCGTCTGTATTCAg < 2:83120/126‑1 (MQ=255)
cgcgATGCCGGGATGGGAATGGCATTTACCGGTGTCACTTATTACGACGGCATTGGCTTCCTGACGCACGATAAAGCGGGGCTAAAAAGCGCGAAAGAACTGGATGGCGCTACCGTCTGTATTCAg > 1:83120/1‑126 (MQ=255)
tGCCGGGATGGGAATGGCATTTACCGGTGTCACTTATTACGACGGCATTGGCTTCCTGACGCACGATAAAGCGGGGCTAAAAAGCGCGAAAGAACTGGa > 2:420430/1‑99 (MQ=255)
tGCCGGGATGGGAATGGCATTTACCGGTGTCACTTATTACGACGGCATTGGCTTCCTGACGCACGATAAAGCGGGGCTAAAAAGCGCGAAAGAACTGGa < 1:420430/99‑1 (MQ=255)
tGGGAATGGCATTTACCGGTGTCACTTATTACGACGGCATTGGCTTCCTGACGCACGATAAAGCGGGGCTAAAAAGCGCGAAAGAACTGGATGGCGCTACCGTCTGTATTCAGGCGGGTACTGATACCGAACTCAACGt > 2:519728/1‑139 (MQ=255)
ggCATTTACCGGTGTCACTTATTACGACGGCATTGGCTTCCTGACGCACGATAAAGCGGGGCTAAAAAGCGCGAAAGAACTGGATGGCGCTACCGTCTGTATTCAGGCGGGTACTGATACCGAACTCAACGTCGCCGac < 2:720029/139‑1 (MQ=255)
ggCATTTACCGGTGTCACTTATTACGACGGCATTGGCTTCCTGACGCACGATAAAGCGGGGCTAAAAAGCGCGAAAGAACTGGATGGCGCTACCGTCTGTATTCAGGCGGGTACTGATACCGAACTCAACGTCGCCGac < 2:646365/139‑1 (MQ=255)
ggCATTTACCGGTGTCACTTATTACGACGGCATTGGCTTCCTGACGCACGATAAAGCGGGGCTAAAAAGCGCGAAAGAACTGGATGGCGCTACCGTCTGTATTCAGGCGGGTACTGATACCGAACTCAACGTCGCCGac < 1:103534/139‑1 (MQ=255)
cATTTACCGGTGTCACTTATTACGACGGCATTGGCTTCCTGACGCACGATAAAGCGGGGCTAAAAAGCGCGAAAGAACTGGATGGCGCTACCGTCTGTATTCAGGCGGGTACTGATACCGAACTCAACGTCGCCGacta > 2:95218/1‑139 (MQ=255)
ttACCGGTGTCACTTATTACGACGGCATTGGCTTCCTGACGCACGATAAAGCGGGGCTAAAAAGCGCGAAAGAACTGGATGGCGCTAc > 2:617038/1‑88 (MQ=255)
ttACCGGTGTCACTTATTACGACGGCATTGGCTTCCTGACGCACGATAAAGCGGGGCTAAAAAGCGCGAAAGAACTGGATGGCGCTAc < 1:617038/88‑1 (MQ=255)
ccGGTGTCACTTATTACGACGGCATTGGCTTCCTGACGCACGATAAAGCGGGGCTAAAAAGCGCGAAAGAACTGGATGGCGCTACCGTCTGTATTCAGGCGGGTACTGATACCGAACTCAACGTCGCCGACTACTTCaa > 1:227129/1‑139 (MQ=255)
|
TACCCCGCTCACTGCAAAAGAACGCTTCACCGCTTTACAGTCAGGGGAGGTGGATTTGCTCTCCCGTAATACGACCTGGACTTCATCTCGCGATGCCGGGATGGGAATGGCATTTACCGGCGTCACTTATTACGACGGCATTGGCTTCCTGACGCACGATAAAGCGGGGCTAAAAAGCGCGAAAGAACTGGATGGCGCTACCGTCTGTATTCAGGCGGGTACTGATACCGAACTCAACGTCGCCGACTACTTCAA > NC_000913/3419283‑3419537
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
