Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A8 F1 I2 R1
|
765 |
53.2 |
2691310 |
93.4% |
2513683 |
103.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,419,403 |
C→T |
pseudogene (297/960 nt) |
yhdW → |
pseudogene, ABC transporter periplasmic binding protein family,putative transport, Not classified, putative periplasmic binding transport protein, periplasmic‑binding component of ABC superfamily |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,419,403 | 0 | C | T | 100.0%
| 196.2
/ NA
| 62 | pseudogene (297/960 nt) | yhdW | pseudogene, ABC transporter periplasmic binding protein family,putative transport, Not classified, putative periplasmic binding transport protein, periplasmic‑binding component of ABC superfamily |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (34/28); total (34/28) |
CCCCGCTCACTGCAAAAGAACGCTTCACCGCTTTACAGTCAGGGGAGGTGGATTTGCTCTCCCGTAATACGACCTGGACTTCATCTCGCGATGCCGGGATGGGAATGGCATTTACCGGCGTCACTTATTACGACGGCATTGGCTTCCTGACGCACGATAAAGCGGGGCTAAAAAGCGCGAAAGAACTGGATGGCGCTACCGTCTGTATTCAGGCGGGTACTGATACCGAACTCAACGTCGCCGACTACTTC > NC_000913/3419285‑3419535
|
ccccGCTCACTGCAAAAGAACGCTTCACCGCTTTACAGTCAGGGGAGGTGGATTTGCTCTCCCGTAATACGACCTGGACTTCATCTCGCGATGCCGGGATGGGAATGGCATTTACCGGTGTCACTTATTACGACGGCa < 1:1151877/138‑1 (MQ=255)
ccccGCTCACTGCAAAAGAACGCTTCACCGCTTTACAGTCAGGGGAGGTGGATTTGCTCTCCCGTAATACGACCTGGACTTCATCTCGCGATGCCGGGATGGGAATGGCATTTACCGGTGTCACTTATTACGACGGCa > 2:1151877/1‑138 (MQ=255)
ccccGCTCACTGCAAAAGAACGCTTCACCGCTTTACAGTCAGGGGAGGTGGATTTGCTCTCCCGTAATACGACCTGGACTTCATCTCGCGATGCCGGGATGGGAATGGCATTTACCGGTGTCACTTATTACGACGGCAt > 2:1027494/1‑139 (MQ=255)
tCACTGCAAAAGAACGCTTCACCGCTTTACAGTCAGGGGAGGTGGATTTGCTCTCCCGTAATACGACCTGGACTTCATCTCGCGATGCCGGGATGGGAATGGCATTTACCGGTGTCACTTATTACGACGGCATTGGCtt > 2:460935/1‑139 (MQ=255)
aaaaGAACGCTTCACCGCTTTACAGTCAGGGGAGGTGGATTTGCTCTCCCGTAATACGACCTGGACTTCATCTCGCGATGCCGGGATGGGAATGGCATTTACCGGTGTCACTTATTACGACGGCATTGGCTTCCTGACg < 2:288552/139‑1 (MQ=255)
cTTCACCGCTTTACAGTCAGGGGAGGTGGATTTGCTCTCCCGTAATACGACCTGGACTTCATCTCGCGATGCCGGGATGGGAATGGCATTTACCGGTGTCACTTATTACGACGGCATTGGCTTCCTGACGCACGATaaa > 1:7061/1‑139 (MQ=255)
ttCACCGCTTTACAGTCAGGGGAGGTGGATTTGCTCTCCCGTAATACGACCTGGACTTCATCTCGCGATGCCGGGATGGGAATGGCATTTACCGGTGTCACTTATTACGACGGCATTGGCTTCCTGACGCACGATAAAg < 1:521145/139‑1 (MQ=255)
tttACAGTCAGGGGAGGTGGATTTGCTCTCCCGTAATACGACCTGGACTTCATCTCGCGATGCCGGGATGGGAATGGCATTTACCGGTGTCACTTATTACGACGGCATTGGCTTCCTGACGCACGATAAAGCGGGGCTa > 1:781370/1‑139 (MQ=255)
aGGGGAGGTGGATTTGCTCTCCCGTAATACGACCTGGACTTCATCTCGCGATGCCGGGATGGGAATGGCATTTACCGGTGTCACTTATTACGACGGCATTGGCTTCCTGACGCACGATAAAGCGGGGCTAAAAAGcgcg > 2:333356/1‑139 (MQ=255)
gggAGGTGGATTTGCTCTCCCGTAATACGACCTGGACTTCATCTCGCGATGCCGGGATGGGAATGGCATTTACCGGTGTCACTTATTACGACGGCATTGGCTTCCTGACGCACGATAAAGCGGGGCTAAAAAGCGCGaa > 2:245023/1‑139 (MQ=255)
ggTGGATTTGCTCTCCCGTAATACGACCTGGACTTCATCTCGCGATGCCGGGATGGGAATGGCATTTACCGGTGTCACTTATTACGACGGCATTGGCTTCCTGACGCACGATAAAGCGGGGCTAAAAAGCGCGAAAGaa < 1:1027494/139‑1 (MQ=255)
ggTGGATTTGCTCTCCCGTAATACGACCTGGACTTCATCTCGCGATGCCGGGATGGGAATGGCATTTACCGGTGTCACTTATTACGACGGCATTGGCTTCCTGACGCACGATAAAGCGGGGCTAAAAAGCGCGAAAGaa < 2:513062/139‑1 (MQ=255)
gTGGATTTGCTCTCCCGTAATACGACCTGGACTTCATCTCGCGATGCCGGGATGGGAATGGCATTTACCGGTGTCACTTATTACGACGGCATTGGCTTCCTGACGCACGATAAAGCg < 1:619963/117‑1 (MQ=255)
gTGGATTTGCTCTCCCGTAATACGACCTGGACTTCATCTCGCGATGCCGGGATGGGAATGGCATTTACCGGTGTCACTTATTACGACGGCATTGGCTTCCTGACGCACGATAAAGCg > 2:619963/1‑117 (MQ=255)
gTGGATTTGCTCTCCCGTAATACGACCTGGACTTCATCTCGCGATGCCGGGATGGGAATGGCATTTACCGGTGTCACTTATTACGACGGCATTGGCTTCCTGACGCACGATAAAGCGGGGCTAAAAAGCGCGAAAGAAc > 1:787570/1‑139 (MQ=255)
tGGATTTGCTCTCCCGTAATACGACCTGGACTTCATCTCGCGATGCCGGGATGGGAATGGCATTTACCGGTGTCACTTATTACGACGGCATTGGCTTCCTGACGCACGATAAAg < 2:1286931/114‑1 (MQ=255)
tGGATTTGCTCTCCCGTAATACGACCTGGACTTCATCTCGCGATGCCGGGATGGGAATGGCATTTACCGGTGTCACTTATTACGACGGCATTGGCTTCCTGACGCACGATAAAg > 1:1286931/1‑114 (MQ=255)
tGGATTTGCTCTCCCGTAATACGACCTGGACTTCATCTCGCGATGCCGGGATGGGAATGGCATTTACCGGTGTCACTTATTACGACGGCATTGGCTTCCTGACGCACGATAAAGCGGGGCTAAAAAGCGCGAAAGAACt > 1:98917/1‑139 (MQ=255)
tGGATTTGCTCTCCCGTAATACGACCTGGACTTCATCTCGCGATGCCGGGATGGGAATGGCATTTACCGGTGTCACTTATTACGACGGCATTGGCTTCCTGACGCACGATAAAGCGGGGCTAAAAAGCGCGAAAGAACt > 2:1093900/1‑139 (MQ=255)
gATTTGCTCTCCCGTAATACGACCTGGACTTCATCTCGCGATGCCGGGATGGGAATGGCATTTACCGGTGTCACTTATTACGACGGCATTGGCTTCCTGACGCACGATAAAGCGGGGCTAAAAAGCGCGAAAGAACTgg > 1:205881/1‑139 (MQ=255)
tttGCTCTCCCGTAATACGACCTGGACTTCATCTCGCGATGCCGGGATGGGAATGGCATTTACCGGTGTCACTTATTACGACGGCATTGGCTTCCTGACGCACGATAAAGCGGGGCTAAAAAGCGCGAAAGAACTGGAt > 2:269901/1‑139 (MQ=255)
tctcCCGTAATACGACCTGGACTTCATCTCGCGATGCCGGGATGGGAATGGCATTTACCGGTGTCACTTATTACGACGGCATTGGCTTCCTGACGCACGATAAAGCGGGGCTAAAAAGCGCGAAAGAACTGGATGgcgc > 1:1223626/1‑139 (MQ=255)
ctcCCGTAATACGACCTGGACTTCATCTCGCGATGCCGGGATGGGAATGGCATTTACCGGTGTCACTTATTACGACGGCATTGGCTTCCTGACGCACGATAAAg > 1:766928/1‑104 (MQ=255)
ctcCCGTAATACGACCTGGACTTCATCTCGCGATGCCGGGATGGGAATGGCATTTACCGGTGTCACTTATTACGACGGCATTGGCTTCCTGACGCACGATAAAg < 2:766928/104‑1 (MQ=255)
cccGTAATACGACCTGGACTTCATCTCGCGATGCCGGGATGGGAATGGCATTTACCGGTGTCACTTATTACGACGGCATTGGCTTCCTGACGCACGATAAAGCGGGGCTAAAAAGCGCGAAAGAACTGGATGGCGCt < 2:1110846/137‑1 (MQ=255)
cccGTAATACGACCTGGACTTCATCTCGCGATGCCGGGATGGGAATGGCATTTACCGGTGTCACTTATTACGACGGCATTGGCTTCCTGACGCACGATAAAGCGGGGCTAAAAAGCGCGAAAGAACTGGATGGCGCt > 1:1110846/1‑137 (MQ=255)
cccGTAATACGACCTGGACTTCATCTCGCGATGCCGGGATGGGAATGGCATTTACCGGTGTCACTTATTACGACGGCATTGGCTTCCTGACGCACGATAAAGCGGGGCTAAAAAGCGCGAAAGAACTGGATGGCGCTAc < 1:931509/139‑1 (MQ=255)
aCCTGGACTTCATCTCGCGATGCCGGGATGGGAATGGCATTTACCGGTGTCACttatta < 2:1129126/59‑1 (MQ=255)
aCCTGGACTTCATCTCGCGATGCCGGGATGGGAATGGCATTTACCGGTGTCACttatta > 1:1129126/1‑59 (MQ=255)
aCCTGGACTTCATCTCGCGATGCCGGGATGGGAATGGCATTTACCGGTGTCACttat < 2:1014113/57‑1 (MQ=255)
aCCTGGACTTCATCTCGCGATGCCGGGATGGGAATGGCATTTACCGGTGTCACttat > 1:1014113/1‑57 (MQ=255)
aCCTGGACTTCATCTCGCGATGCCGGGATGGGAATGGCATTTACCGGTGTCACTTATTACGACGGCATTGGCTTCCTGACg < 1:6069/81‑1 (MQ=255)
aCCTGGACTTCATCTCGCGATGCCGGGATGGGAATGGCATTTACCGGTGTCACTTATTACGACGGCATTGGCTTCCTGACGCACGATAAAGCGGGGCTAAAAAGCGCGAAAGAACTGGATGGCGCTACCGTCTGTAtt < 1:1337912/138‑1 (MQ=255)
aCCTGGACTTCATCTCGCGATGCCGGGATGGGAATGGCATTTACCGGTGTCACTTATTACGACGGCATTGGCTTCCTGACGCACGATAAAGCGGGGCTAAAAAGCGCGAAAGAACTGGATGGCGCTACCGTCTGTAtt > 2:1337912/1‑138 (MQ=255)
aCCTGGACTTCATCTCGCGATGCCGGGATGGGAATGGCATTTACCGGTGTCACTTATTACGACGGCATTGGCTTCCTGACGCACGATAAAGCGGGGCTAAAAAGCGCGAAAGAACTGGATGGCGCTACCGTCTGTATTc > 1:261/1‑139 (MQ=255)
aCCTGGACTTCATCTCCCGATGCCGGGATGGGAATGGCATTTACCGGTGTCACTTATTACGACGGCATTGGCTTCCTGACg > 2:6069/1‑81 (MQ=255)
ccTGGACTTCATCTCGCGATGCCGGGATGGGAATGGCATTTACCGGTGTCACTTATTACGACGGCATTGGCTTCCTGACGCACGATAAAGCGGGGCTaaa > 2:330372/1‑100 (MQ=255)
ccTGGACTTCATCTCGCGATGCCGGGATGGGAATGGCATTTACCGGTGTCACTTATTACGACGGCATTGGCTTCCTGACGCACGATAAAGCGGGGCTaaa < 1:330372/100‑1 (MQ=255)
ccTGGACTTCATCTCGCGATGCCGGGATGGGAATGGCATTTACCGGTGTCACTTATTACGACGGCATTGGCTTCCTGACGCACGATAAAGCGGGGCTAAAAAGCGCGAAAGAACTGGATGGCGCTACCGTCTGTATTCa > 1:1055732/1‑139 (MQ=255)
tGGACTTCATCTCGCGATGCCGGGATGGGAATGGCATTTACCGGTGTCACTTATTACGACGGCATTGGCTTCCTGACGCACGATAAAGCGGGGCTAAAAAGCGCGAAAGAACTGGATGGCGCTACCGTCTGTATTCAgg < 2:781370/139‑1 (MQ=255)
cATCTCGCGATGCCGGGATGGGAATGGCATTTACCGGTGTCACTTATTACGACGGCATTGGCTTCCTGACGCACGATAAAGCGGGGCTAAAAAGCGCGAAAGAACTGGATGGCGCTACCGTCTGTATTCAGGCGGGTAc > 2:836882/1‑139 (MQ=255)
aTCTCGCGATGCCGGGATGGGAATGGCATTTACCGGTGTCACTTATTACGACGGCATTGGCTTCCTGACGCACGATAAAGCGGGGCTAAAAAGCGCGAAAGAACTGGATGGCGCTAc > 2:281950/1‑117 (MQ=255)
aTCTCGCGATGCCGGGATGGGAATGGCATTTACCGGTGTCACTTATTACGACGGCATTGGCTTCCTGACGCACGATAAAGCGGGGCTAAAAAGCGCGAAAGAACTGGATGGCGCTAc < 1:281950/117‑1 (MQ=255)
aTCTCGCGATGCCGGGATGGGAATGGCATTTACCGGTGTCACTTATTACGACGGCATTGGCTTCCTGACGCACGATAAAGCGGGGCTAAAAAGCGCGAAAGAACTGGATGGCGCTACCGTCTGTATTCAGGCGGGTACt > 2:1051328/1‑139 (MQ=255)
aTCTCGCGATGCCGGGATGGGAATGGCATTTACCGGTGTCACTTATTACGACGGCATTGGCTTCCTGACGCACGATAAAGCGGGGCTAAAAAGCGCGAAAGAACTGGATGGCGCTACCGTCTGTATTCAGGCGGGTACt > 2:377800/1‑139 (MQ=255)
tGCCGGGATGGGAATGGCATTTACCGGTGTCACTTATTACGACGGCATTGGCTTCCTGACGCACGATAAAGCGGGGCTAAAAAGCGCGAAAGAACTGGATGGCGCTACCGTCTGTATTCAGGCg > 2:1171926/1‑124 (MQ=255)
tGCCGGGATGGGAATGGCATTTACCGGTGTCACTTATTACGACGGCATTGGCTTCCTGACGCACGATAAAGCGGGGCTAAAAAGCGCGAAAGAACTGGATGGCGCTACCGTCTGTATTCAGGCg < 1:1171926/124‑1 (MQ=255)
tGCCGGGATGGGAATGGCATTTACCGGTGTCACTTATTACGACGGCATTGGCTTCCTGACGCACGATAAAGCGGGGCTAAAAAGCGCGAAAGAACTGGATGGCGCTACCGTCTGTATTCAGGCGGGTACTGATACCGaa < 1:377800/139‑1 (MQ=255)
ggAATGGCATTTACCGGTGTCACTTATTACGACGGCATTGGCTTCCTGACGCACGATAAAg < 2:1004713/61‑1 (MQ=255)
ggAATGGCATTTACCGGTGTCACTTATTACGACGGCATTGGCTTCCTGACGCACGATAAAg > 1:1004713/1‑61 (MQ=255)
tGGCATTTACCGGTGTCACTTATTACGACGGCATTGGCTTCCTGACGCACGATAAAGCGGGGCTAAAAAGCGCGAAAGAACTGGATGGCGCTACCGTCTGTATTCAGGCGGGTACTGATACCGAACTCAACGTCGCCGa < 2:7061/139‑1 (MQ=255)
ggCATTTACCGGTGTCACTTATTACGACGGCATTGGCTTCCTGACGCACGATAAAGCGGGGCTAAAAAGCGCGAAAGAACTGGATGGCGCTACCGTCTGTATTCAGGCGGGTACTGATACCGAACTCAACGTCGCCGac < 1:333356/139‑1 (MQ=255)
ggCATTTACCGGTGTCACTTATTACGACGGCATTGGCTTCCTGACGCACGATAAAGCGGGGCTAAAAAGCGCGAAAGAACTGGATGGCGCTACCGTCTGTATTCAGGCGGGTACTGATACCGAACTCAACGTCGCCGac < 1:1093900/139‑1 (MQ=255)
gCATTTACCGGTGTCACTTATTACGACGGCATTGGCTTCCTGACGCACGATAAAGCGGGGCTaaa < 2:508240/65‑1 (MQ=255)
gCATTTACCGGTGTCACTTATTACGACGGCATTGGCTTCCTGACGCACGATAAAGCGGGGCTaaa > 1:508240/1‑65 (MQ=255)
cATTTACCGGTGTCACTTATTACGACGGCATTGGCTTCCTGACGCACGATAAAg < 1:236329/54‑1 (MQ=255)
cATTTACCGGTGTCACTTATTACGACGGCATTGGCTTCCTGACGCACGATAAAg > 2:236329/1‑54 (MQ=255)
cATTTACCGGTGTCACTTATTACGACGGCATTGGCTTCCTGACGCACGATAAAGCGGGGCTAAAAAg < 2:400592/67‑1 (MQ=255)
cATTTACCGGTGTCACTTATTACGACGGCATTGGCTTCCTGACGCACGATAAAGCGGGGCTAAAAAg > 1:400592/1‑67 (MQ=255)
ttACCGGTGTCACTTATTACGACGGCATTGGCTTCCTGACGCACGATAAAGCGGGGCTAAAAAGCGCGAAAGAACTGGATGGCGCTACCGTCTGTATTCAGGCGGGTACTGATACCGAACTCAACg > 1:745527/1‑126 (MQ=255)
ttACCGGTGTCACTTATTACGACGGCATTGGCTTCCTGACGCACGATAAAGCGGGGCTAAAAAGCGCGAAAGAACTGGATGGCGCTACCGTCTGTATTCAGGCGGGTACTGATACCGAACTCAACg < 2:745527/126‑1 (MQ=255)
tACCGGTGTCACTTATTACGACGGCATTGGCTTCCTGACGCACGATAAAGCGGGGCTAAAAAGCGCGAAAGAACTGGATGGCGCTACCGTCTGTATTCAGGCGGGTACTGATACCGAACTCAACGTCGCCGACTACTTc < 1:269901/139‑1 (MQ=255)
|
CCCCGCTCACTGCAAAAGAACGCTTCACCGCTTTACAGTCAGGGGAGGTGGATTTGCTCTCCCGTAATACGACCTGGACTTCATCTCGCGATGCCGGGATGGGAATGGCATTTACCGGCGTCACTTATTACGACGGCATTGGCTTCCTGACGCACGATAAAGCGGGGCTAAAAAGCGCGAAAGAACTGGATGGCGCTACCGTCTGTATTCAGGCGGGTACTGATACCGAACTCAACGTCGCCGACTACTTC > NC_000913/3419285‑3419535
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
