Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A8 F1 I1 R1
|
771 |
44.8 |
2153074 |
94.1% |
2026042 |
109.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,781,017 |
G→A |
*397* (TAG→TAA) |
lldD → |
L‑lactate dehydrogenase, FMN‑linked |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,781,017 | 0 | G | A | 100.0%
| 127.5
/ NA
| 40 | *397* (TAG→TAA) | lldD | L‑lactate dehydrogenase, FMN‑linked |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (16/24); total (16/24) |
GATGAAAGTGGCGATGACGCTGACTGGCGCGAAATCGATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCA‑TAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCA‑CTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCC > NC_000913/3780888‑3781145
|
gaTGAAAGTGGCGATGACGCTGACTGGCGCGAAATCGATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCA‑TAATCGTTTgcg < 2:909404/139‑1 (MQ=255)
aTGAAAGTGGCGATGACGCTGACTGGCGCGAAATCGATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCA‑TAATCGTTTgcgc < 1:364001/139‑1 (MQ=255)
aGTGGCGATGACGCTGACTGGCGCGAAATCGATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCA‑TAATCGTTTGCGCCCCCt < 1:829441/139‑1 (MQ=255)
cGATGACGCTGACTGGCGCGAAATCGATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCA‑TAATCGTTTGCGCCCCCTCAccc > 1:109473/1‑139 (MQ=255)
tGACTGGCGCGAAATCGATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCA‑TAATCGTTTGCGCCCCCTCACCCTAACCctct > 2:383514/1‑139 (MQ=255)
tGACTGGCGCGAAATCGATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGACTCCCATGGCGAAAGGGAATGCGGCA‑TAATCGTTTGCGCCCCCTCACCCTAACCctct < 2:900639/139‑1 (MQ=255)
cTGGCGCGAAATCGATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCA‑TAATCGTTTGCGCCCCCTCACCCTAACCCTCTccc < 1:864335/139‑1 (MQ=255)
ggCGCGAAATCGATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCA‑TAATCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTc > 2:918432/1‑139 (MQ=255)
cgcgAAATCGATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCA‑TAATCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAg < 1:1074105/139‑1 (MQ=255)
cAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCA‑TAATCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGAcc < 2:109473/139‑1 (MQ=255)
aaaTTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCA‑TAATCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCg < 1:383514/139‑1 (MQ=255)
aaaTTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCA‑TAATCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCg < 1:466075/139‑1 (MQ=255)
aTTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCA‑TAATCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGgc < 1:805930/139‑1 (MQ=255)
tACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCA‑TAATCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGgcgc < 1:918432/139‑1 (MQ=255)
tACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCA‑TAATCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGgcgc < 1:859308/139‑1 (MQ=255)
cAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCA‑TAATCGTTTGCGCCCCCt < 2:554220/93‑1 (MQ=255)
cAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCA‑TAATCGTTTGCGCCCCCt > 1:554220/1‑93 (MQ=255)
gggTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCA‑TAATCGTTTGCGCCCCCTCAcc < 1:62866/74‑1 (MQ=255)
gggTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCA‑TAATCGTTTGCGCCCCCTCAcc > 2:62866/1‑74 (MQ=255)
gggTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCA‑TAATCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGgcg < 1:461285/111‑1 (MQ=255)
gggTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCA‑TAATCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGgcg > 2:461285/1‑111 (MQ=255)
gggTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCA‑TAATCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCA‑CTCTGAAACGa > 1:1055317/1‑139 (MQ=255)
aaGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCA‑TAATCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCA‑CTCTGAAACGACACCg < 1:945433/139‑1 (MQ=255)
tGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCA‑TAATCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGgcg > 1:489434/1‑100 (MQ=255)
tGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCA‑TAATCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGgcg < 2:489434/100‑1 (MQ=255)
tGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCA‑TAATCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCA‑CTCTGAAACGACACCGCActct > 2:973215/1‑139 (MQ=255)
ccTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCA‑TAATCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCA‑c > 2:1063969/1‑116 (MQ=255)
ccTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCA‑TAATCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCA‑c < 1:1063969/116‑1 (MQ=255)
cTGGCTCCCATGGCGAAAGGGAATGCGGCA‑TAATCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGAGAACGGTCGGCGCTGTATGTACTCCCTCA‑CTCTGAAACGACAACGCACTCTTTTTTTCTccc < 2:539275/139‑1 (MQ=255)
tGGCTCCCATGGCGAAAGGGAATGCGGCA‑TAATCGTTTGCGCCCCCt > 1:145586/1‑47 (MQ=255)
tGGCTCCCATGGCGAAAGGGAATGCGGCA‑TAATCGTTTGCGCCCCCt < 2:145586/47‑1 (MQ=255)
gCTCCCATGGCGAAAGGGAATGCGGCA‑TAATCGTTTGCGCCCCCt < 2:996516/45‑1 (MQ=255)
gCTCCCATGGCGAAAGGGAATGCGGCA‑TAATCGTTTGCGCCCCCt > 1:996516/1‑45 (MQ=255)
ccATGGCGAAAGGGAATGCGGCATTATTCG‑TTGCCCCCCCTTCACCTAACCCCTCCCCTCAGGGGAAGGGGAACGTTCGGCGCTGTAAGTTCCTCCTCAGCTC‑GAAAAGGCACCGGACCCTTTTTTTCTCCCTCGcccc < 2:1060517/139‑1 (MQ=255)
cGAAAGGGAATGCGGCA‑TAATCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCA‑CTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCggg > 1:968345/1‑139 (MQ=255)
aaaGGGAATGCGGCA‑TAATCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAg > 2:644957/1‑54 (MQ=255)
aaaGGGAATGCGGCA‑TAATCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAg < 1:644957/54‑1 (MQ=255)
aaaGGGAATGCGGCA‑TAATCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCA‑CTCTGAAACGACACCGCa > 2:844914/1‑109 (MQ=255)
aaaGGGAATGCGGCA‑TAATCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCA‑CTCTGAAACGACACCGCa < 1:844914/109‑1 (MQ=255)
aGGGAATGCGGCA‑TAATCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCA‑CTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGgaga < 1:973215/139‑1 (MQ=255)
aTGCGGCA‑TAATCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCA‑CTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGcc > 2:779299/1‑139 (MQ=255)
|
GATGAAAGTGGCGATGACGCTGACTGGCGCGAAATCGATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCA‑TAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCA‑CTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCC > NC_000913/3780888‑3781145
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
